RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux auburn 3.8.0-2-mustang #12-Ubuntu SMP Thu Jan 9 09:48:54 UTC 2014 aarch64 Buildd toolchain package versions: launchpad-buildd_123~0.IS.8.04 python-lpbuildd_123~0.IS.8.04 dpkg-dev_1.17.5ubuntu5.3. Syncing the system clock with the buildd NTP service... 2 Jul 05:12:59 ntpdate[32018]: adjust time server 10.211.37.1 offset -0.023817 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-6148086', '/home/buildd/filecache-default/068c484e8020d4b6c6e70f59341012b33345dbcd'] Unpacking chroot for build PACKAGEBUILD-6148086 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-6148086'] Mounting chroot for build PACKAGEBUILD-6148086 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-6148086', 'deb http://ftpmaster.internal/ubuntu utopic main universe', 'deb http://ftpmaster.internal/ubuntu utopic-security main universe', 'deb http://ftpmaster.internal/ubuntu utopic-updates main universe', 'deb http://ftpmaster.internal/ubuntu utopic-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-6148086 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-6148086', 'arm64'] Updating debian chroot for build PACKAGEBUILD-6148086 Ign http://ftpmaster.internal utopic InRelease Ign http://archive-team.internal utopic InRelease Ign http://ftpmaster.internal utopic-security InRelease Ign http://archive-team.internal utopic Release.gpg Ign http://ftpmaster.internal utopic-updates InRelease Get:1 http://archive-team.internal utopic Release [730 B] Ign http://ftpmaster.internal utopic-proposed InRelease Get:2 http://ftpmaster.internal utopic Release.gpg [933 B] Get:3 http://ftpmaster.internal utopic-security Release.gpg [933 B] Get:4 http://ftpmaster.internal utopic-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal utopic-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal utopic Release [58.5 kB] Get:7 http://archive-team.internal utopic/main arm64 Packages Get:8 http://ftpmaster.internal utopic-security Release [58.5 kB] Ign http://archive-team.internal utopic/main Translation-en Get:9 http://ftpmaster.internal utopic-updates Release [58.5 kB] Get:10 http://ftpmaster.internal utopic-proposed Release [58.5 kB] Get:11 http://ftpmaster.internal utopic/main arm64 Packages [1295 kB] Get:12 http://ftpmaster.internal utopic/universe arm64 Packages [5697 kB] Get:13 http://ftpmaster.internal utopic/main Translation-en [771 kB] Get:14 http://ftpmaster.internal utopic/universe Translation-en [4222 kB] Get:15 http://ftpmaster.internal utopic-security/main arm64 Packages [14 B] Get:16 http://ftpmaster.internal utopic-security/universe arm64 Packages [14 B] Get:17 http://ftpmaster.internal utopic-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal utopic-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal utopic-updates/main arm64 Packages [14 B] Get:20 http://ftpmaster.internal utopic-updates/universe arm64 Packages [14 B] Get:21 http://ftpmaster.internal utopic-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal utopic-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal utopic-proposed/main arm64 Packages [24.6 kB] Get:24 http://ftpmaster.internal utopic-proposed/universe arm64 Packages [303 kB] Get:25 http://ftpmaster.internal utopic-proposed/main Translation-en [16.1 kB] Get:26 http://ftpmaster.internal utopic-proposed/universe Translation-en [189 kB] Fetched 12.8 MB in 9s (1324 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgnutls28 Use 'apt-get autoremove' to remove it. The following NEW packages will be installed: init-system-helpers libgnutls-deb0-28 libitm1 The following packages will be upgraded: apt apt-transport-https bash binutils bsdutils busybox-initramfs ca-certificates cpp cpp-4.8 dpkg dpkg-dev e2fslibs e2fsprogs fakeroot g++ g++-4.8 gcc gcc-4.8 gcc-4.8-base gcc-4.9-base gnupg gpgv hostname ifupdown initramfs-tools initramfs-tools-bin initscripts iproute2 kmod libapt-pkg4.12 libasn1-8-heimdal libatomic1 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcgmanager0 libcomerr2 libcurl3-gnutls libdbus-1-3 libdebconfclient0 libdpkg-perl libdrm2 libfakeroot libffi6 libgcc-4.8-dev libgcc1 libgmp10 libgnutls26 libgnutls28 libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libisl10 libkmod2 libkrb5-26-heimdal libmount1 libnih-dbus1 libnih1 libpam-modules libpam-modules-bin libpam-runtime libpam0g libplymouth2 libpng12-0 libprocps3 libroken18-heimdal libsasl2-2 libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-4.8-dev libstdc++6 libtasn1-6 libudev1 libuuid1 libwind0-heimdal linux-libc-dev login lsb-base make module-init-tools mount mountall multiarch-support openssl optipng passwd perl perl-base perl-modules plymouth procps sysv-rc sysvinit-utils tzdata udev upstart util-linux 108 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 45.0 MB of archives. After this operation, 3351 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ utopic/main bash arm64 4.3-7ubuntu3 [510 kB] Get:2 http://ftpmaster.internal/ubuntu/ utopic/main dpkg arm64 1.17.10ubuntu1 [1969 kB] Get:3 http://ftpmaster.internal/ubuntu/ utopic/main libc-bin arm64 2.19-4ubuntu1 [1053 kB] Get:4 http://ftpmaster.internal/ubuntu/ utopic/main upstart arm64 1.12.1-0ubuntu11 [326 kB] Get:5 http://ftpmaster.internal/ubuntu/ utopic/main lsb-base all 4.1+Debian11ubuntu8 [13.1 kB] Get:6 http://ftpmaster.internal/ubuntu/ utopic/main sysvinit-utils arm64 2.88dsf-41ubuntu16 [48.9 kB] Get:7 http://ftpmaster.internal/ubuntu/ utopic/main init-system-helpers all 1.19 [12.5 kB] Get:8 http://ftpmaster.internal/ubuntu/ utopic/main plymouth arm64 0.8.8-0ubuntu18 [85.3 kB] Get:9 http://ftpmaster.internal/ubuntu/ utopic/main libplymouth2 arm64 0.8.8-0ubuntu18 [62.6 kB] Get:10 http://ftpmaster.internal/ubuntu/ utopic/main initramfs-tools-bin arm64 0.103ubuntu7 [8924 B] Get:11 http://ftpmaster.internal/ubuntu/ utopic/main initramfs-tools all 0.103ubuntu7 [44.6 kB] Get:12 http://ftpmaster.internal/ubuntu/ utopic/main mountall arm64 2.54 [49.6 kB] Get:13 http://ftpmaster.internal/ubuntu/ utopic/main initscripts arm64 2.88dsf-41ubuntu16 [35.0 kB] Get:14 http://ftpmaster.internal/ubuntu/ utopic/main sysv-rc all 2.88dsf-41ubuntu16 [37.8 kB] Get:15 http://ftpmaster.internal/ubuntu/ utopic/main libselinux1 arm64 2.3-1 [48.9 kB] Get:16 http://ftpmaster.internal/ubuntu/ utopic/main perl-modules all 5.18.2-4 [2691 kB] Get:17 http://ftpmaster.internal/ubuntu/ utopic/main perl arm64 5.18.2-4 [2194 kB] Get:18 http://ftpmaster.internal/ubuntu/ utopic/main perl-base arm64 5.18.2-4 [1010 kB] Get:19 http://ftpmaster.internal/ubuntu/ utopic/main libpam0g arm64 1.1.8-3ubuntu1 [52.8 kB] Get:20 http://ftpmaster.internal/ubuntu/ utopic/main libsemanage-common all 2.3-1 [6278 B] Get:21 http://ftpmaster.internal/ubuntu/ utopic/main libsemanage1 arm64 2.3-1 [55.9 kB] Get:22 http://ftpmaster.internal/ubuntu/ utopic/main libsepol1 arm64 2.3-1 [83.1 kB] Get:23 http://ftpmaster.internal/ubuntu/ utopic/main libpam-modules-bin arm64 1.1.8-3ubuntu1 [28.5 kB] Get:24 http://ftpmaster.internal/ubuntu/ utopic/main libpam-modules arm64 1.1.8-3ubuntu1 [214 kB] Get:25 http://ftpmaster.internal/ubuntu/ utopic/main passwd arm64 1:4.1.5.1-1.1ubuntu1 [724 kB] Get:26 http://ftpmaster.internal/ubuntu/ utopic/main libuuid1 arm64 2.20.1-5.1ubuntu21 [10.1 kB] Get:27 http://ftpmaster.internal/ubuntu/ utopic/main libblkid1 arm64 2.20.1-5.1ubuntu21 [51.6 kB] Get:28 http://ftpmaster.internal/ubuntu/ utopic/main libdbus-1-3 arm64 1.6.18-0ubuntu8 [107 kB] Get:29 http://ftpmaster.internal/ubuntu/ utopic/main libcgmanager0 arm64 0.26-0ubuntu3 [22.7 kB] Get:30 http://ftpmaster.internal/ubuntu/ utopic/main libkmod2 arm64 18-1ubuntu1 [30.5 kB] Get:31 http://ftpmaster.internal/ubuntu/ utopic/main libnih-dbus1 arm64 1.0.3-4ubuntu26 [12.3 kB] Get:32 http://ftpmaster.internal/ubuntu/ utopic/main libnih1 arm64 1.0.3-4ubuntu26 [40.8 kB] Get:33 http://ftpmaster.internal/ubuntu/ utopic/main tzdata all 2014e-1 [190 kB] Get:34 http://ftpmaster.internal/ubuntu/ utopic/main util-linux arm64 2.20.1-5.1ubuntu21 [428 kB] Get:35 http://ftpmaster.internal/ubuntu/ utopic/main libprocps3 arm64 1:3.3.9-1ubuntu5 [27.4 kB] Get:36 http://ftpmaster.internal/ubuntu/ utopic/main procps arm64 1:3.3.9-1ubuntu5 [199 kB] Get:37 http://ftpmaster.internal/ubuntu/ utopic/main udev arm64 204-12ubuntu1 [715 kB] Get:38 http://ftpmaster.internal/ubuntu/ utopic/main libudev1 arm64 204-12ubuntu1 [29.7 kB] Get:39 http://ftpmaster.internal/ubuntu/ utopic/main busybox-initramfs arm64 1:1.22.0-6ubuntu1 [161 kB] Get:40 http://ftpmaster.internal/ubuntu/ utopic/main kmod arm64 18-1ubuntu1 [74.6 kB] Get:41 http://ftpmaster.internal/ubuntu/ utopic/main module-init-tools all 18-1ubuntu1 [2084 B] Get:42 http://ftpmaster.internal/ubuntu/ utopic/main libdrm2 arm64 2.4.54-1 [19.6 kB] Get:43 http://ftpmaster.internal/ubuntu/ utopic/main libpng12-0 arm64 1.2.50-1ubuntu3 [106 kB] Get:44 http://ftpmaster.internal/ubuntu/ utopic/main mount arm64 2.20.1-5.1ubuntu21 [109 kB] Get:45 http://ftpmaster.internal/ubuntu/ utopic/main iproute2 arm64 3.15.0-2 [382 kB] Get:46 http://ftpmaster.internal/ubuntu/ utopic/main ifupdown arm64 0.7.48.1ubuntu4 [48.2 kB] Get:47 http://ftpmaster.internal/ubuntu/ utopic/main libc6-dev arm64 2.19-4ubuntu1 [1682 kB] Get:48 http://ftpmaster.internal/ubuntu/ utopic/main libc-dev-bin arm64 2.19-4ubuntu1 [61.3 kB] Get:49 http://ftpmaster.internal/ubuntu/ utopic/main linux-libc-dev arm64 3.15.0-6.11 [735 kB] Get:50 http://ftpmaster.internal/ubuntu/ utopic/main libgomp1 arm64 4.9.0-9ubuntu2 [31.5 kB] Get:51 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.9-base arm64 4.9.0-9ubuntu2 [15.4 kB] Get:52 http://ftpmaster.internal/ubuntu/ utopic/main libgcc1 arm64 1:4.9.0-9ubuntu2 [32.5 kB] Get:53 http://ftpmaster.internal/ubuntu/ utopic/main libatomic1 arm64 4.9.0-9ubuntu2 [6756 B] Get:54 http://ftpmaster.internal/ubuntu/ utopic/main libstdc++6 arm64 4.9.0-9ubuntu2 [259 kB] Get:55 http://ftpmaster.internal/ubuntu/ utopic/main libc6 arm64 2.19-4ubuntu1 [4090 kB] Get:56 http://ftpmaster.internal/ubuntu/ utopic/main e2fslibs arm64 1.42.10-1ubuntu1 [164 kB] Get:57 http://ftpmaster.internal/ubuntu/ utopic/main e2fsprogs arm64 1.42.10-1ubuntu1 [654 kB] Get:58 http://ftpmaster.internal/ubuntu/ utopic/main hostname arm64 3.15ubuntu2 [11.4 kB] Get:59 http://ftpmaster.internal/ubuntu/ utopic/main login arm64 1:4.1.5.1-1.1ubuntu1 [298 kB] Get:60 http://ftpmaster.internal/ubuntu/ utopic/main libapt-pkg4.12 arm64 1.0.4ubuntu4 [592 kB] Get:61 http://ftpmaster.internal/ubuntu/ utopic/main gpgv arm64 1.4.16-1.2ubuntu1 [135 kB] Get:62 http://ftpmaster.internal/ubuntu/ utopic/main gnupg arm64 1.4.16-1.2ubuntu1 [551 kB] Get:63 http://ftpmaster.internal/ubuntu/ utopic/main apt arm64 1.0.4ubuntu4 [952 kB] Get:64 http://ftpmaster.internal/ubuntu/ utopic/main bsdutils arm64 1:2.20.1-5.1ubuntu21 [33.2 kB] Get:65 http://ftpmaster.internal/ubuntu/ utopic/main libcomerr2 arm64 1.42.10-1ubuntu1 [62.8 kB] Get:66 http://ftpmaster.internal/ubuntu/ utopic/main libdebconfclient0 arm64 0.191ubuntu1 [6006 B] Get:67 http://ftpmaster.internal/ubuntu/ utopic/main libmount1 arm64 2.20.1-5.1ubuntu21 [47.2 kB] Get:68 http://ftpmaster.internal/ubuntu/ utopic/main libss2 arm64 1.42.10-1ubuntu1 [66.2 kB] Get:69 http://ftpmaster.internal/ubuntu/ utopic/main libffi6 arm64 3.1-2 [16.3 kB] Get:70 http://ftpmaster.internal/ubuntu/ utopic/main libgmp10 arm64 2:6.0.0+dfsg-4 [196 kB] Get:71 http://ftpmaster.internal/ubuntu/ utopic/main libtasn1-6 arm64 3.7-1 [37.9 kB] Get:72 http://ftpmaster.internal/ubuntu/ utopic/main libgnutls28 arm64 3.2.15-1 [373 kB] Get:73 http://ftpmaster.internal/ubuntu/ utopic/main libsqlite3-0 arm64 3.8.5-2ubuntu1 [292 kB] Get:74 http://ftpmaster.internal/ubuntu/ utopic/main libssl1.0.0 arm64 1.0.1f-1ubuntu6 [661 kB] Get:75 http://ftpmaster.internal/ubuntu/ utopic/main libroken18-heimdal arm64 1.6~rc2+dfsg-7 [34.6 kB] Get:76 http://ftpmaster.internal/ubuntu/ utopic/main libasn1-8-heimdal arm64 1.6~rc2+dfsg-7 [124 kB] Get:77 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libgnutls-deb0-28 arm64 3.2.15-2 [374 kB] Get:78 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libcurl3-gnutls arm64 7.36.0-2ubuntu2 [135 kB] Get:79 http://ftpmaster.internal/ubuntu/ utopic/main libgnutls26 arm64 2.12.23-15ubuntu2 [327 kB] Get:80 http://ftpmaster.internal/ubuntu/ utopic/main libhcrypto4-heimdal arm64 1.6~rc2+dfsg-7 [75.4 kB] Get:81 http://ftpmaster.internal/ubuntu/ utopic/main libheimbase1-heimdal arm64 1.6~rc2+dfsg-7 [24.3 kB] Get:82 http://ftpmaster.internal/ubuntu/ utopic/main libwind0-heimdal arm64 1.6~rc2+dfsg-7 [46.8 kB] Get:83 http://ftpmaster.internal/ubuntu/ utopic/main libhx509-5-heimdal arm64 1.6~rc2+dfsg-7 [83.7 kB] Get:84 http://ftpmaster.internal/ubuntu/ utopic/main libkrb5-26-heimdal arm64 1.6~rc2+dfsg-7 [160 kB] Get:85 http://ftpmaster.internal/ubuntu/ utopic/main libheimntlm0-heimdal arm64 1.6~rc2+dfsg-7 [13.2 kB] Get:86 http://ftpmaster.internal/ubuntu/ utopic/main libgssapi3-heimdal arm64 1.6~rc2+dfsg-7 [73.2 kB] Get:87 http://ftpmaster.internal/ubuntu/ utopic/main libsasl2-modules-db arm64 2.1.26.dfsg1-10 [12.8 kB] Get:88 http://ftpmaster.internal/ubuntu/ utopic/main libsasl2-2 arm64 2.1.26.dfsg1-10 [40.4 kB] Get:89 http://ftpmaster.internal/ubuntu/ utopic/main libisl10 arm64 0.12.2-2 [324 kB] Get:90 http://ftpmaster.internal/ubuntu/ utopic/main libitm1 arm64 4.9.0-9ubuntu2 [26.2 kB] Get:91 http://ftpmaster.internal/ubuntu/ utopic/main libpam-runtime all 1.1.8-3ubuntu1 [39.7 kB] Get:92 http://ftpmaster.internal/ubuntu/ utopic/main multiarch-support arm64 2.19-4ubuntu1 [4550 B] Get:93 http://ftpmaster.internal/ubuntu/ utopic/main apt-transport-https arm64 1.0.4ubuntu4 [25.0 kB] Get:94 http://ftpmaster.internal/ubuntu/ utopic/main openssl arm64 1.0.1f-1ubuntu6 [475 kB] Get:95 http://ftpmaster.internal/ubuntu/ utopic/main ca-certificates all 20140325 [184 kB] Get:96 http://ftpmaster.internal/ubuntu/ utopic/main binutils arm64 2.24.51.20140617-1ubuntu1 [1047 kB] Get:97 http://ftpmaster.internal/ubuntu/ utopic/main g++-4.8 arm64 4.8.3-4ubuntu2 [5237 kB] Get:98 http://ftpmaster.internal/ubuntu/ utopic/main libstdc++-4.8-dev arm64 4.8.3-4ubuntu2 [1052 kB] Get:99 http://ftpmaster.internal/ubuntu/ utopic/main libgcc-4.8-dev arm64 4.8.3-4ubuntu2 [161 kB] Get:100 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.8 arm64 4.8.3-4ubuntu2 [3987 kB] Get:101 http://ftpmaster.internal/ubuntu/ utopic/main cpp-4.8 arm64 4.8.3-4ubuntu2 [3487 kB] Get:102 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.8-base arm64 4.8.3-4ubuntu2 [15.1 kB] Get:103 http://ftpmaster.internal/ubuntu/ utopic/main cpp arm64 4:4.9.0-3ubuntu5 [27.7 kB] Get:104 http://ftpmaster.internal/ubuntu/ utopic/main dpkg-dev all 1.17.10ubuntu1 [714 kB] Get:105 http://ftpmaster.internal/ubuntu/ utopic/main libdpkg-perl all 1.17.10ubuntu1 [181 kB] Get:106 http://ftpmaster.internal/ubuntu/ utopic/main make arm64 4.0-8 [135 kB] Get:107 http://ftpmaster.internal/ubuntu/ utopic/main libfakeroot arm64 1.20-3ubuntu3 [21.4 kB] Get:108 http://ftpmaster.internal/ubuntu/ utopic/main fakeroot arm64 1.20-3ubuntu3 [53.3 kB] Get:109 http://ftpmaster.internal/ubuntu/ utopic/main gcc arm64 4:4.9.0-3ubuntu5 [5316 B] Get:110 http://ftpmaster.internal/ubuntu/ utopic/main g++ arm64 4:4.9.0-3ubuntu5 [1606 B] Get:111 http://ftpmaster.internal/ubuntu/ utopic/main optipng arm64 0.7.5-1 [77.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 45.0 MB in 33s (1328 kB/s) (Reading database ... 11758 files and directories currently installed.) Preparing to unpack .../bash_4.3-7ubuntu3_arm64.deb ... Unpacking bash (4.3-7ubuntu3) over (4.3-7ubuntu1) ... Setting up bash (4.3-7ubuntu3) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 11758 files and directories currently installed.) Preparing to unpack .../dpkg_1.17.10ubuntu1_arm64.deb ... Unpacking dpkg (1.17.10ubuntu1) over (1.17.9ubuntu1) ... Setting up dpkg (1.17.10ubuntu1) ... Installing new version of config file /etc/cron.daily/dpkg ... (Reading database ... 11758 files and directories currently installed.) Preparing to unpack .../libc-bin_2.19-4ubuntu1_arm64.deb ... Unpacking libc-bin (2.19-4ubuntu1) over (2.19-0ubuntu6) ... Preparing to unpack .../libc6_2.19-4ubuntu1_arm64.deb ... Unpacking libc6:arm64 (2.19-4ubuntu1) over (2.19-0ubuntu6) ... Preparing to unpack .../libgcc1_1%3a4.9.0-9ubuntu2_arm64.deb ... 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Setting up libsasl2-modules-db:arm64 (2.1.26.dfsg1-10) ... Setting up libsasl2-2:arm64 (2.1.26.dfsg1-10) ... Setting up libisl10:arm64 (0.12.2-2) ... Setting up libitm1:arm64 (4.9.0-9ubuntu2) ... Setting up apt-transport-https (1.0.4ubuntu4) ... Setting up openssl (1.0.1f-1ubuntu6) ... Setting up ca-certificates (20140325) ... Setting up binutils (2.24.51.20140617-1ubuntu1) ... Setting up gcc-4.8-base:arm64 (4.8.3-4ubuntu2) ... Setting up cpp-4.8 (4.8.3-4ubuntu2) ... Setting up libgcc-4.8-dev:arm64 (4.8.3-4ubuntu2) ... Setting up gcc-4.8 (4.8.3-4ubuntu2) ... Setting up libstdc++-4.8-dev:arm64 (4.8.3-4ubuntu2) ... Setting up g++-4.8 (4.8.3-4ubuntu2) ... Setting up cpp (4:4.9.0-3ubuntu5) ... Setting up make (4.0-8) ... Setting up libfakeroot:arm64 (1.20-3ubuntu3) ... Setting up fakeroot (1.20-3ubuntu3) ... Setting up gcc (4:4.9.0-3ubuntu5) ... Setting up g++ (4:4.9.0-3ubuntu5) ... Setting up optipng (0.7.5-1) ... Setting up perl-modules (5.18.2-4) ... Setting up perl (5.18.2-4) ... Setting up init-system-helpers (1.19) ... Setting up mountall (2.54) ... Installing new version of config file /etc/init/mounted-proc.conf ... Setting up initscripts (2.88dsf-41ubuntu16) ... Installing new version of config file /etc/init.d/ondemand ... Setting up procps (1:3.3.9-1ubuntu5) ... Installing new version of config file /etc/init/procps.conf ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libdpkg-perl (1.17.10ubuntu1) ... Setting up dpkg-dev (1.17.10ubuntu1) ... Setting up udev (204-12ubuntu1) ... Installing new version of config file /etc/init.d/udev ... Installing new version of config file /etc/init/udev-finish.conf ... A chroot environment has been detected, udev not started. update-initramfs: deferring update (trigger activated) update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match udev Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match udev Default-Stop values (none) update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match udev-finish Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match udev-finish Default-Stop values (none) update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match lvm2 Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match lvm2 Default-Stop values (none) Setting up initramfs-tools (0.103ubuntu7) ... update-initramfs: deferring update (trigger activated) Setting up ifupdown (0.7.48.1ubuntu4) ... Installing new version of config file /etc/init/network-interface.conf ... update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match networking Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match networking Default-Stop values (0 6) Setting up upstart (1.12.1-0ubuntu11) ... Installing new version of config file /etc/upstart-xsessions ... Installing new version of config file /etc/cron.daily/upstart ... Setting up plymouth (0.8.8-0ubuntu18) ... update-initramfs: deferring update (trigger activated) Processing triggers for libc-bin (2.19-4ubuntu1) ... Processing triggers for ca-certificates (20140325) ... Updating certificates in /etc/ssl/certs... 7 added, 3 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Processing triggers for initramfs-tools (0.103ubuntu7) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-6148086', 'arm64', 'utopic-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=utopic-proposed', '--purpose=PRIMARY', '--architecture=arm64', '--comp=universe', 'ncbi-blast+_2.2.29-3.dsc'] Initiating build PACKAGEBUILD-6148086 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.8.0-2-mustang #12-Ubuntu SMP Thu Jan 9 09:48:54 UTC 2014 aarch64 Automatic build of ncbi-blast+_2.2.29-3 on auburn by sbuild/arm64 1.170.5 Build started at 20140702-0517 ****************************************************************************** ncbi-blast+_2.2.29-3.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: autotools-dev (>= 20100122), debhelper (>= 9), dpkg-dev (>= 1.16.1), libboost-test-dev, libbz2-dev, libc0.3-dev (>= 2.13-9~) [hurd-i386], libpcre3-dev, quilt, time, zlib1g-dev Checking for already installed source dependencies... autotools-dev: missing debhelper: missing dpkg-dev: already installed (1.17.10ubuntu1 >= 1.16.1 is satisfied) libboost-test-dev: missing libbz2-dev: missing libpcre3-dev: missing quilt: missing time: missing zlib1g-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install autotools-dev debhelper libboost-test-dev libbz2-dev libpcre3-dev quilt time zlib1g-dev Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgnutls28 Use 'apt-get autoremove' to remove it. The following extra packages will be installed: bsdmainutils dh-apparmor diffstat file gettext gettext-base groff-base intltool-debian libasprintf0c2 libboost-test1.55-dev libboost-test1.55.0 libboost1.55-dev libcroco3 libglib2.0-0 libmagic1 libpcrecpp0 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make apparmor-easyprof gettext-doc groff libboost1.55-doc libboost-atomic1.55-dev libboost-chrono1.55-dev libboost-context1.55-dev libboost-coroutine1.55-dev libboost-date-time1.55-dev libboost-exception1.55-dev libboost-filesystem1.55-dev libboost-graph1.55-dev libboost-graph-parallel1.55-dev libboost-iostreams1.55-dev libboost-locale1.55-dev libboost-log1.55-dev libboost-math1.55-dev libboost-mpi1.55-dev libboost-mpi-python1.55-dev libboost-program-options1.55-dev libboost-python1.55-dev libboost-random1.55-dev libboost-regex1.55-dev libboost-serialization1.55-dev libboost-signals1.55-dev libboost-system1.55-dev libboost-thread1.55-dev libboost-timer1.55-dev libboost-wave1.55-dev libboost1.55-tools-dev libmpfrc++-dev libntl-dev less www-browser libmail-box-perl procmail graphviz default-mta mail-transport-agent Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: autotools-dev bsdmainutils debhelper dh-apparmor diffstat file gettext gettext-base groff-base intltool-debian libasprintf0c2 libboost-test-dev libboost-test1.55-dev libboost-test1.55.0 libboost1.55-dev libbz2-dev libcroco3 libglib2.0-0 libmagic1 libpcre3-dev libpcrecpp0 libpipeline1 libunistring0 libxml2 man-db po-debconf quilt time zlib1g-dev 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 12.6 MB of archives. After this operation, 126 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ utopic/main libmagic1 arm64 1:5.18-1ubuntu1 [190 kB] Get:2 http://ftpmaster.internal/ubuntu/ utopic/main libasprintf0c2 arm64 0.18.3.2-1ubuntu1 [6354 B] Get:3 http://ftpmaster.internal/ubuntu/ utopic/main libglib2.0-0 arm64 2.41.1-2 [878 kB] Get:4 http://ftpmaster.internal/ubuntu/ utopic/main libpipeline1 arm64 1.3.0-1 [20.8 kB] Get:5 http://ftpmaster.internal/ubuntu/ utopic/main libxml2 arm64 2.9.1+dfsg1-3ubuntu7 [463 kB] Get:6 http://ftpmaster.internal/ubuntu/ utopic/main groff-base arm64 1.22.2-6 [1049 kB] Get:7 http://ftpmaster.internal/ubuntu/ utopic/main bsdmainutils arm64 9.0.5ubuntu1 [199 kB] Get:8 http://ftpmaster.internal/ubuntu/ utopic/main man-db arm64 2.6.7.1-1 [827 kB] Get:9 http://ftpmaster.internal/ubuntu/ utopic/main libboost-test1.55.0 arm64 1.55.0+dfsg-1ubuntu2 [160 kB] Get:10 http://ftpmaster.internal/ubuntu/ utopic/main libcroco3 arm64 0.6.8-2ubuntu1 [65.1 kB] Get:11 http://ftpmaster.internal/ubuntu/ utopic/main libpcrecpp0 arm64 1:8.31-5ubuntu1 [14.2 kB] Get:12 http://ftpmaster.internal/ubuntu/ utopic/main libunistring0 arm64 0.9.3-5ubuntu3 [255 kB] Get:13 http://ftpmaster.internal/ubuntu/ utopic/main file arm64 1:5.18-1ubuntu1 [20.0 kB] Get:14 http://ftpmaster.internal/ubuntu/ utopic/main gettext-base arm64 0.18.3.2-1ubuntu1 [45.8 kB] Get:15 http://ftpmaster.internal/ubuntu/ utopic/main time arm64 1.7-25 [25.9 kB] Get:16 http://ftpmaster.internal/ubuntu/ utopic/main autotools-dev all 20140510.1 [39.7 kB] Get:17 http://ftpmaster.internal/ubuntu/ utopic/main gettext arm64 0.18.3.2-1ubuntu1 [774 kB] Get:18 http://ftpmaster.internal/ubuntu/ utopic/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:19 http://ftpmaster.internal/ubuntu/ utopic/main po-debconf all 1.0.16+nmu3 [207 kB] Get:20 http://ftpmaster.internal/ubuntu/ utopic/main dh-apparmor all 2.8.96~2541-0ubuntu1 [11.8 kB] Get:21 http://ftpmaster.internal/ubuntu/ utopic/main debhelper all 9.20140228ubuntu6 [606 kB] Get:22 http://ftpmaster.internal/ubuntu/ utopic/main diffstat arm64 1.58-1 [20.0 kB] Get:23 http://ftpmaster.internal/ubuntu/ utopic/main libboost1.55-dev arm64 1.55.0+dfsg-1ubuntu2 [5802 kB] Get:24 http://ftpmaster.internal/ubuntu/ utopic/main libboost-test1.55-dev arm64 1.55.0+dfsg-1ubuntu2 [215 kB] Get:25 http://ftpmaster.internal/ubuntu/ utopic/main libboost-test-dev arm64 1.55.0.1~ubuntu1 [2906 B] Get:26 http://ftpmaster.internal/ubuntu/ utopic/main libbz2-dev arm64 1.0.6-5 [33.6 kB] Get:27 http://ftpmaster.internal/ubuntu/ utopic/main libpcre3-dev arm64 1:8.31-5ubuntu1 [227 kB] Get:28 http://ftpmaster.internal/ubuntu/ utopic/main quilt all 0.63-3 [272 kB] Get:29 http://ftpmaster.internal/ubuntu/ utopic/main zlib1g-dev arm64 1:1.2.8.dfsg-1ubuntu1 [179 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.6 MB in 13s (966 kB/s) Selecting previously unselected package libmagic1:arm64. (Reading database ... 11846 files and directories currently installed.) Preparing to unpack .../libmagic1_1%3a5.18-1ubuntu1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.18-1ubuntu1) ... Selecting previously unselected package libasprintf0c2:arm64. Preparing to unpack .../libasprintf0c2_0.18.3.2-1ubuntu1_arm64.deb ... Unpacking libasprintf0c2:arm64 (0.18.3.2-1ubuntu1) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../libglib2.0-0_2.41.1-2_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.41.1-2) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../libpipeline1_1.3.0-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.3.0-1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../libxml2_2.9.1+dfsg1-3ubuntu7_arm64.deb ... Unpacking libxml2:arm64 (2.9.1+dfsg1-3ubuntu7) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.2-6_arm64.deb ... 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Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-1ubuntu1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.8.dfsg-1ubuntu1) ... Setting up libmagic1:arm64 (1:5.18-1ubuntu1) ... Setting up libasprintf0c2:arm64 (0.18.3.2-1ubuntu1) ... Setting up libglib2.0-0:arm64 (2.41.1-2) ... No schema files found: doing nothing. Setting up libpipeline1:arm64 (1.3.0-1) ... Setting up libxml2:arm64 (2.9.1+dfsg1-3ubuntu7) ... Setting up groff-base (1.22.2-6) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.7.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-test1.55.0:arm64 (1.55.0+dfsg-1ubuntu2) ... Setting up libcroco3:arm64 (0.6.8-2ubuntu1) ... Setting up libpcrecpp0:arm64 (1:8.31-5ubuntu1) ... Setting up libunistring0:arm64 (0.9.3-5ubuntu3) ... Setting up file (1:5.18-1ubuntu1) ... Setting up gettext-base (0.18.3.2-1ubuntu1) ... Setting up time (1.7-25) ... Setting up autotools-dev (20140510.1) ... Setting up gettext (0.18.3.2-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu3) ... Setting up dh-apparmor (2.8.96~2541-0ubuntu1) ... Setting up debhelper (9.20140228ubuntu6) ... Setting up diffstat (1.58-1) ... Setting up libboost1.55-dev:arm64 (1.55.0+dfsg-1ubuntu2) ... Setting up libboost-test1.55-dev:arm64 (1.55.0+dfsg-1ubuntu2) ... Setting up libboost-test-dev:arm64 (1.55.0.1~ubuntu1) ... Setting up libbz2-dev:arm64 (1.0.6-5) ... Setting up libpcre3-dev:arm64 (1:8.31-5ubuntu1) ... Setting up quilt (0.63-3) ... Setting up zlib1g-dev:arm64 (1:1.2.8.dfsg-1ubuntu1) ... Processing triggers for libc-bin (2.19-4ubuntu1) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.19-4ubuntu1 make_4.0-8 dpkg-dev_1.17.10ubuntu1 gcc-4.8_4.8.3-4ubuntu2 g++-4.8_4.8.3-4ubuntu2 binutils_2.24.51.20140617-1ubuntu1 libstdc++-4.8-dev_4.8.3-4ubuntu2 libstdc++6_4.9.0-9ubuntu2 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Tue Jul 1 22:35:45 2014 UTC using RSA key ID F14A64A2 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./ncbi-blast+_2.2.29-3.dsc dpkg-source: info: extracting ncbi-blast+ in ncbi-blast+-2.2.29 dpkg-source: info: unpacking ncbi-blast+_2.2.29.orig.tar.gz dpkg-source: info: unpacking ncbi-blast+_2.2.29-3.debian.tar.xz dpkg-source: info: applying enable_clean_after_failed_compile dpkg-source: info: applying hurd_fixes dpkg-source: info: applying legacy_rename_rpsblast dpkg-source: info: applying fix_lib_deps dpkg-source: info: applying no_multiarch_rpath dpkg-source: info: applying use_pie_for_apps dpkg-source: info: applying skip_services_unit_test dpkg-source: info: applying fix_configure dpkg-source: info: applying include_typeinfo dpkg-buildpackage: source package ncbi-blast+ dpkg-buildpackage: source version 2.2.29-3 dpkg-buildpackage: source distribution unstable dpkg-source --before-build ncbi-blast+-2.2.29 dpkg-buildpackage: host architecture arm64 /usr/bin/fakeroot debian/rules clean dh clean -Dc++ --with autotools_dev --with quilt dh_testdir -O-Dc\+\+ dh_auto_clean -O-Dc\+\+ dh_autotools-dev_restoreconfig -O-Dc\+\+ dh_quilt_unpatch -O-Dc\+\+ Removing patch include_typeinfo Restoring c++/include/corelib/ncbistl.hpp Removing patch fix_configure Restoring c++/configure.orig Removing patch skip_services_unit_test Restoring c++/src/objtools/blast/services/unit_test/Makefile.blast_services_unit_test.app Removing patch use_pie_for_apps Restoring c++/src/build-system/Makefile.app.in Removing patch no_multiarch_rpath Restoring c++/src/build-system/configure Restoring c++/src/build-system/configure.ac Removing patch fix_lib_deps Restoring c++/src/objmgr/split/Makefile.id2_split.lib Restoring c++/src/objmgr/util/Makefile.util.lib Restoring c++/src/connect/ext/Makefile.xconnext.lib Restoring c++/src/connect/Makefile.xconnect.lib Restoring c++/src/util/sequtil/Makefile.sequtil.lib Restoring c++/src/util/compress/api/Makefile.compress.lib Restoring c++/src/util/xregexp/Makefile.xregexp.lib Restoring c++/src/util/Makefile.util.lib Restoring c++/src/html/Makefile.html.lib Restoring c++/src/algo/dustmask/Makefile.xalgodustmask.lib Restoring c++/src/algo/segmask/Makefile.xalgosegmask.lib Restoring c++/src/algo/winmask/Makefile.xalgowinmask.lib Restoring c++/src/algo/blast/format/Makefile.xblastformat.lib Restoring c++/src/algo/blast/dbindex/makeindex/Makefile.makeindex.app Restoring c++/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib Restoring c++/src/algo/blast/blastinput/Makefile.blastinput.lib Restoring c++/src/algo/blast/Makefile.blast_macros.mk Restoring c++/src/algo/blast/core/Makefile.blast.lib Restoring c++/src/algo/blast/api/Makefile.xblast.lib Restoring c++/src/objects/blastdb/Makefile.blastdb.lib Restoring c++/src/objects/seqsplit/Makefile.seqsplit.lib Restoring c++/src/objects/genomecoll/Makefile.genome_collection.lib Restoring c++/src/objects/scoremat/Makefile.scoremat.lib Restoring c++/src/objects/general/Makefile.general.lib Restoring c++/src/objects/id1/Makefile.id1.lib Restoring c++/src/objects/medline/Makefile.medline.lib Restoring c++/src/objects/id2/Makefile.id2.lib Restoring c++/src/objects/seqedit/Makefile.seqedit.lib Restoring c++/src/objects/entrez2/Makefile.entrez2cli.lib Restoring c++/src/objects/entrez2/Makefile.entrez2.lib Restoring c++/src/objects/biblio/Makefile.biblio.lib Restoring c++/src/objects/seq/Makefile.seq.lib Restoring c++/src/objects/blastxml/Makefile.blastxml.lib Restoring c++/src/objects/seqset/Makefile.seqset.lib Restoring c++/src/objects/pub/Makefile.pub.lib Restoring c++/src/objects/submit/Makefile.submit.lib Restoring c++/src/objects/seqcode/Makefile.seqcode.lib Restoring c++/src/objects/blast/Makefile.xnetblastcli.lib Restoring c++/src/objects/blast/Makefile.blast.lib Restoring c++/src/objtools/alnmgr/Makefile.alnmgr.lib Restoring c++/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib Restoring c++/src/objtools/readers/Makefile.xobjread.lib Restoring c++/src/objtools/align_format/Makefile.align_format.lib Restoring c++/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib Restoring c++/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib Restoring c++/src/objtools/data_loaders/genbank/cache/Makefile.ncbi_xreader_cache.lib Restoring c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib Restoring c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xloader_genbank.lib Restoring c++/src/objtools/data_loaders/genbank/id1/Makefile.ncbi_xreader_id1.lib Restoring c++/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib Restoring c++/src/objtools/simple/Makefile.xobjsimple.lib Restoring c++/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib Restoring c++/src/objtools/blast/seqdb_writer/Makefile.writedb.lib Restoring c++/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib Restoring c++/src/objtools/blast/services/Makefile.blast_services.lib Restoring c++/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib Restoring c++/src/corelib/Makefile.test_mt.lib Restoring c++/src/corelib/Makefile.test_boost.lib Restoring c++/src/cgi/Makefile.cgi.lib Restoring c++/src/serial/Makefile.serial.lib Removing patch legacy_rename_rpsblast Restoring c++/src/app/blast/legacy_blast.pl Removing patch hurd_fixes Restoring c++/src/connect/ncbi_socket_cxx.cpp Restoring c++/src/connect/ext/ncbi_localnet.c Restoring c++/src/build-system/configure Restoring c++/src/build-system/configure.ac Removing patch enable_clean_after_failed_compile Restoring c++/src/build-system/new_module.sh.in No patches applied debian/rules override_dh_clean make[1]: Entering directory '/build/buildd/ncbi-blast+-2.2.29' cp c++/configure.orig configure.orig.save dh_clean #Tricky - for each module directory there may be several module files #or there may be none but then there is still a module named after the #directory. Clean everything! for x in c++/src/objects/* ; do \ (cd "$x" && ( \ mods="`echo *.module`" ; \ [ "${mods#*\*}" = "$mods" ] || mods="`basename $x`" ; \ for mod in $mods ; do \ ../../../BUILD/build/new_module.sh $mod purge_sources ; \ done ) ; \ ) ; \ done /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found debian/rules:75: recipe for target 'override_dh_clean' failed make[1]: [override_dh_clean] Error 127 (ignored) rm -rf c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module find -name check_exec.pid -delete rm -rf c++/BUILD mv configure.orig.save c++/configure.orig make[1]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29' debian/rules build-arch dh build-arch -Dc++ --with autotools_dev --with quilt dh_testdir -a -O-Dc\+\+ dh_autotools-dev_updateconfig -a -O-Dc\+\+ dh_quilt_patch -a -O-Dc\+\+ Applying patch enable_clean_after_failed_compile patching file c++/src/build-system/new_module.sh.in Hunk #1 succeeded at 180 (offset 2 lines). Applying patch hurd_fixes patching file c++/src/build-system/configure Hunk #1 succeeded at 6146 (offset 286 lines). patching file c++/src/build-system/configure.ac Hunk #1 succeeded at 1675 (offset 117 lines). patching file c++/src/connect/ncbi_socket_cxx.cpp patching file c++/src/connect/ext/ncbi_localnet.c Applying patch legacy_rename_rpsblast patching file c++/src/app/blast/legacy_blast.pl Applying patch fix_lib_deps patching file c++/src/algo/blast/core/Makefile.blast.lib patching file c++/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib patching file c++/src/algo/blast/format/Makefile.xblastformat.lib patching file c++/src/algo/winmask/Makefile.xalgowinmask.lib patching file c++/src/cgi/Makefile.cgi.lib patching file c++/src/html/Makefile.html.lib patching file c++/src/objects/blast/Makefile.xnetblastcli.lib patching file c++/src/objtools/align_format/Makefile.align_format.lib patching file c++/src/objtools/alnmgr/Makefile.alnmgr.lib patching file c++/src/objtools/readers/Makefile.xobjread.lib patching file c++/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib patching file c++/src/objtools/simple/Makefile.xobjsimple.lib patching file c++/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib patching file c++/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib patching file c++/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib patching file c++/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib patching file c++/src/algo/blast/api/Makefile.xblast.lib patching file c++/src/algo/blast/blastinput/Makefile.blastinput.lib patching file c++/src/algo/dustmask/Makefile.xalgodustmask.lib patching file c++/src/connect/Makefile.xconnect.lib patching file c++/src/connect/ext/Makefile.xconnext.lib patching file c++/src/objects/blast/Makefile.blast.lib patching file c++/src/objects/blastxml/Makefile.blastxml.lib patching file c++/src/objects/entrez2/Makefile.entrez2.lib patching file c++/src/objects/entrez2/Makefile.entrez2cli.lib patching file c++/src/objects/scoremat/Makefile.scoremat.lib patching file c++/src/objects/seqedit/Makefile.seqedit.lib patching file c++/src/objects/submit/Makefile.submit.lib patching file c++/src/objmgr/util/Makefile.util.lib patching file c++/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib patching file c++/src/objtools/blast/services/Makefile.blast_services.lib patching file c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xloader_genbank.lib patching file c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib patching file c++/src/objtools/data_loaders/genbank/cache/Makefile.ncbi_xreader_cache.lib patching file c++/src/objtools/data_loaders/genbank/id1/Makefile.ncbi_xreader_id1.lib patching file c++/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib patching file c++/src/util/compress/api/Makefile.compress.lib patching file c++/src/util/sequtil/Makefile.sequtil.lib patching file c++/src/corelib/Makefile.test_boost.lib patching file c++/src/corelib/Makefile.test_mt.lib patching file c++/src/objects/biblio/Makefile.biblio.lib patching file c++/src/objects/blastdb/Makefile.blastdb.lib patching file c++/src/objects/general/Makefile.general.lib patching file c++/src/objects/genomecoll/Makefile.genome_collection.lib patching file c++/src/objects/id1/Makefile.id1.lib patching file c++/src/objects/id2/Makefile.id2.lib patching file c++/src/objects/medline/Makefile.medline.lib patching file c++/src/objects/pub/Makefile.pub.lib patching file c++/src/objects/seq/Makefile.seq.lib patching file c++/src/objects/seqcode/Makefile.seqcode.lib patching file c++/src/objects/seqset/Makefile.seqset.lib patching file c++/src/objects/seqsplit/Makefile.seqsplit.lib patching file c++/src/serial/Makefile.serial.lib patching file c++/src/util/Makefile.util.lib patching file c++/src/util/xregexp/Makefile.xregexp.lib patching file c++/src/algo/segmask/Makefile.xalgosegmask.lib patching file c++/src/objmgr/split/Makefile.id2_split.lib patching file c++/src/objtools/blast/seqdb_writer/Makefile.writedb.lib patching file c++/src/algo/blast/Makefile.blast_macros.mk patching file c++/src/algo/blast/dbindex/makeindex/Makefile.makeindex.app Applying patch no_multiarch_rpath patching file c++/src/build-system/configure Hunk #1 succeeded at 6209 (offset 286 lines). patching file c++/src/build-system/configure.ac Hunk #1 succeeded at 1737 (offset 117 lines). Applying patch use_pie_for_apps patching file c++/src/build-system/Makefile.app.in Applying patch skip_services_unit_test patching file c++/src/objtools/blast/services/unit_test/Makefile.blast_services_unit_test.app Applying patch fix_configure patching file c++/configure.orig Applying patch include_typeinfo patching file c++/include/corelib/ncbistl.hpp Now at patch include_typeinfo debian/rules override_dh_auto_configure make[1]: Entering directory '/build/buildd/ncbi-blast+-2.2.29' cd c++ && LD_LIBRARY_PATH=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib${LD_LIBRARY_PATH+:$LD_LIBRARY_PATH} \ CONFIG_SHELL=/bin/bash ./configure --with-dll --with-mt --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --with-runpath=/usr/lib/ncbi-blast+ --with-build-root=BUILD --without-debug configure: loading site script /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/config.site configure: creating cache config.cache checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes adjusted C compiler: /usr/bin/gcc adjusted C++ compiler: /usr/bin/g++ Using built-in specs. COLLECT_GCC=/usr/bin/gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/aarch64-linux-gnu/4.8/lto-wrapper Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.8.3-4ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --disable-libsanitizer --disable-libquadmath --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-arm64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-arm64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-arm64 --with-arch-directory=arm64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-multiarch --disable-werror --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu Thread model: posix gcc version 4.8.3 (Ubuntu/Linaro 4.8.3-4ubuntu2) checking whether /usr/bin/gcc has an option to export all symbols... -rdynamic checking whether /usr/bin/gcc supports -Wl,--{en,dis}able-new-dtags... yes checking how to enable C++ '11 features in /usr/bin/g++ ... -std=gnu++11 checking how to enable C '11 or at least '99 features in /usr/bin/gcc ... -std=gnu11 -fgnu89-inline checking whether ln -s works... yes checking for ranlib... ranlib checking for ar... ar cr checking ranlib's effectiveness... neutral checking for strip... strip checking whether strip loses runtime type information... no checking for ccache... no checking for tail... /usr/bin/tail checking whether /usr/bin/tail accepts modern syntax (-n N)... yes checking for touch... /bin/touch checking for grep... /bin/grep checking for egrep... grep -E checking how to run grep -E quietly... grep -E -q checking for valgrind... no checking for ldd... /usr/bin/ldd checking whether /usr/bin/ldd accepts -r... yes checking how to run the C++ preprocessor... /usr/bin/g++ -std=gnu++11 -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for size_t... yes checking for size_t... (cached) yes checking size of size_t... 8 checking for amq... no checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -Wl,--no-allow-shlib-undefined... yes checking how to run the C preprocessor... /usr/bin/gcc -std=gnu11 -fgnu89-inline -E checking whether cross-directory hard links work... yes checking iostream usability... yes checking iostream presence... yes checking for iostream... yes checking iostream.h usability... no checking iostream.h presence... no checking for iostream.h... no checking fstream usability... yes checking fstream presence... yes checking for fstream... yes checking fstream.h usability... no checking fstream.h presence... no checking for fstream.h... no checking strstream usability... yes checking strstream presence... yes checking for strstream... yes checking strstream.h usability... no checking strstream.h presence... no checking for strstream.h... no checking strstrea.h usability... no checking strstrea.h presence... no checking for strstrea.h... no checking for inttypes.h... 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for writev... yes checking return type of signal handlers... void checking whether select updates the timeout when interrupted... yes checking whether strcasecmp treats letters as lowercase... yes checking for Linux-like sysinfo with 1 arg... yes checking for getloadavg... yes checking for readdir_r... 3 checking for an ANSI C-conforming const... yes checking whether byte ordering is bigendian... no checking whether char is unsigned... yes checking for char... yes checking size of char... 1 checking for double... yes checking size of double... 8 checking for float... yes checking size of float... 4 checking for int... yes checking size of int... 4 checking for long... yes checking size of long... 8 checking for long double... yes checking size of long double... 16 checking for long long... yes checking size of long long... 8 checking for short... yes checking size of short... 2 checking for void*... yes checking size of void*... 8 checking for __int64... no checking size of __int64... 0 checking for intptr_t... yes checking for uintptr_t... yes checking for struct sockaddr_in.sin_len... no checking for struct tm.tm_zone... yes checking for struct tm.__tm_zone... no checking whether function prototypes can use throw(...)... yes checking for obsolete string::compare() syntax... no checking whether the auto_ptr template class works... yes checking for min/max templates... yes checking whether new C++ streams have ios_base::... yes checking for ios(_base)::register_callback... yes checking for std::char_traits::... yes checking for SysV semaphores... yes checking for union semun... no checking which way the stack grows... down checking whether the preprocessor supports C99-style variadic macros... yes checking whether the preprocessor supports GNU-style variadic macros... yes checking syntax for marking deprecated functions... __attribute__((__deprecated__)) checking how to force inlining... inline __attribute__((always_inline)) checking whether the C compiler supports __attribute__((destructor))... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports __attribute__((visibility("default")))... (cached) unnecessary checking whether the C compiler supports C99 restrict... __restrict__ checking whether the C++ compiler supports C99 restrict... __restrict__ checking syntax for marking functions that never return... __attribute__((__noreturn__)) checking syntax for declaring thread-local variables... __thread checking whether FIONBIO requires BSD_COMP to be defined... no checking whether INADDR_NONE is defined... yes checking whether unaligned reads are permissible... yes checking whether in-house NCBI resources are available... no checking for gethostbyname in -lnsl... yes checking for connect in -lsocket... no checking for res_search in -lresolv... yes checking for inet_ntoa_r... no checking for getaddrinfo... yes checking for getnameinfo... yes checking for freehostent... no checking for gethostent_r... yes checking for getipnodebyaddr... no checking for getipnodebyname... no checking for inet_ntop... yes checking for erf... yes checking for library containing kstat_open... no checking for library containing rstat... no checking for library containing setkey... -lcrypt checking for library containing dlopen... -ldl checking for library containing uuid_generate... no checking for library containing fuse_loop... no checking for library containing clock_gettime... none required checking for library containing cplus_demangle... no checking for nanosleep... yes checking for sched_yield... yes checking for library containing iconv... none required checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for libz... yes checking for libbz2... yes checking for libpcre... yes checking for libgcrypt-config... no checking for libgcrypt... no checking for libgnutls-config... no checking for libgnutls... no checking for libssl... no checking for krb5-config... no checking for libgssapi_krb5... no checking for libcurl... no checking for reentrant Sybase libraries... no checking for Sybase... no checking for FreeTDS... no checking for mysql_config... no checking for Berkeley DB libraries... no checking for python... no checking for python2.3... no checking for python2.4... no checking for python2.5... no checking for perl... /usr/bin/perl checking for usable Perl libraries... no basename: missing operand Try 'basename --help' for more information. checking Boost version... 1_55 configure: WARNING: Untested Boost version; may prove incompatible. configure: WARNING: If so, please re-run this script with the flag --without-boost. checking for Boost library name tag... -gcc48-mt-1_55-64 (autodetected) checking for Boost.Regex... no checking for Boost.Spirit... yes checking for Boost.System... no checking for Boost.Filesystem... no checking for Boost.Test... included-only checking for Boost.Threads... no checking for the NCBI C toolkit... no checking for X... no checking for XextCreateExtension in -lXext... no checking for XtMainLoop in -lXt... no checking for 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/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/config.h config.status: creating /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/build-system/Makefile config.status: creating /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/install.sh config.status: creating /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.null config.status: creating /build/buildd/ncbi-blast+-2.2.29/c++/./Makefile config.status: creating /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc/ncbiconf_unix.h config.status: executing default commands /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/corelib/ncbicfg.c is updated Platform not defined for Linux aarch64 -- please fix me project_tree_builder is not found at /net/snowman/vol/export2/win-coremake/App/Ncbi/cppcore/ptb/UNKNOWN/3.10.0/project_tree_builder Will build project_tree_builder locally ********************************************************************** Building project_tree_builder ********************************************************************** make[2]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/corelib' make[3]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/corelib' /usr/bin/make[3] (Makefile.precompile): Nothing to be done for `all'. make[3]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/corelib' /usr/bin/make[2] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/corelib TMPL=corelib -w all make[3]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbi_os_unix.cpp:34:0: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/blob_storage.cpp -o blob_storage.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/blob_storage.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/blob_storage.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ddumpable.cpp -o ddumpable.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ddumpable.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ddumpable.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/env_reg.cpp -o env_reg.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbienv.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/env_reg.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/env_reg.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/metareg.cpp -o metareg.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/metareg.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/metareg.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbi_config.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbi_param.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbi_process.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_safe_static.hpp:48, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbi_safe_static.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_signal.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbi_signal.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbi_stack.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbi_system.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbiapp.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbiargs.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbiatomic.cpp:45: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include ncbicfg.c -o ncbicfg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_safe_static.hpp:48, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidbg.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_process.hpp:44:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidiag.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidiag.cpp:787:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:1759) [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidiag.cpp:1685:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidiag.cpp:889) [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidiag.cpp: In member function 'std::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidiag.cpp:1748:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidiag.cpp:889) [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidiag.cpp:1773:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidiag.cpp:889) [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidiag.cpp:1805:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidiag.cpp:889) [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages)': /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidiag.cpp:2796:44: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:339) [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiutil.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidiag_p.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidiag_p.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidll.cpp -o ncbidll.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidll.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbidll.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbienv.cpp -o ncbienv.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbienv.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbienv.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_process.hpp:44:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiexec.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbiexec.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbiexpt.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbifile.cpp -o ncbifile.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbifile.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimempool.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbimempool.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbimtx.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbiobj.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbireg.cpp -o ncbireg.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbireg.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbistr.cpp -o ncbistr.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbistr.cpp:35:0: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbistre.cpp -o ncbistre.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbistre.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbithr.cpp -o ncbithr.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbithr.cpp:45: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbitime.cpp -o ncbitime.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbitime.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/obj_store.cpp -o obj_store.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/obj_store.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/obj_store.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/plugin_manager.hpp:70, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/plugin_manager.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/plugin_manager.hpp:70, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/plugin_manager_store.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/plugin_manager_store.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/stream_utils.cpp -o stream_utils.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/stream_utils.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/syslog.cpp -o syslog.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/syslog.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/syslog.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/version.cpp -o version.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/version.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/version.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/request_ctx.cpp -o request_ctx.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/request_ctx.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/request_ctx.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/request_control.cpp -o request_control.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/request_control.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/expr.cpp -o expr.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/expr.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/expr.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/resource_info.cpp -o resource_info.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/resource_info.hpp:42:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/resource_info.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/interprocess_lock.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbi_autoinit.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/perf_log.cpp -o perf_log.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/perf_log.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/perf_log.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbi_toolkit.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbierror.cpp -o ncbierror.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/ncbierror.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /bin/rm -f libxncbi.so .libxncbi.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxncbi.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libxncbi.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libxncbi.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libxncbi.so ln -f .xncbi.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.xncbi.dep make[3]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/corelib' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/corelib TMPL=test_mt -w all make[3]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/test_mt.cpp -o test_mt.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_mt.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/test_mt.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /bin/rm -f libtest_mt.so .libtest_mt.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtest_mt.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC test_mt.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libtest_mt.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libtest_mt.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libtest_mt.so ln -f .test_mt.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.test_mt.dep make[3]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/corelib' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/corelib TMPL=test_boost -w all make[3]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/test_boost.cpp -o test_boost.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbienv.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/corelib/test_boost.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /bin/rm -f libtest_boost.so .libtest_boost.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtest_boost.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC test_boost.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libtest_boost.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libtest_boost.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libtest_boost.so ln -f .test_boost.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.test_boost.dep make[3]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/corelib' make[2]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/corelib' make[2]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util' /usr/bin/make[2] (Makefile.util.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/util TMPL=util -w all make[3]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/random_gen.cpp -o random_gen.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/random_gen.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/random_gen.cpp:75: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/utf8.cpp -o utf8.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/utf8.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/utf8.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/checksum.cpp -o checksum.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/checksum.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/bytesrc.cpp -o bytesrc.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/bytesrc.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/strbuffer.cpp -o strbuffer.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/strbuffer.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/strbuffer.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/itree.cpp -o itree.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/itree.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/smalldns.cpp -o smalldns.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/smalldns.cpp:34:0: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/thread_pool_old.cpp -o thread_pool_old.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/thread_pool_old.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/thread_pool.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/thread_pool_old.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/util/thread_pool_old.cpp: In member function 'virtual void ncbi::CStdPoolOfThreads::KillAllThreads(ncbi::CStdPoolOfThreads::TKillFlags)': /build/buildd/ncbi-blast+-2.2.29/c++/src/util/thread_pool_old.cpp:63:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n != n2) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/util/thread_pool_old.cpp:66:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n2 > n) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/ddump_viewer.cpp -o ddump_viewer.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/ddump_viewer.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/strsearch.cpp -o strsearch.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/strsearch.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/strsearch.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/logrotate.cpp -o logrotate.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/logrotate.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/logrotate.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/format_guess.cpp -o format_guess.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/format_guess.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/format_guess.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/util/format_guess.cpp: In member function 'bool ncbi::CFormatGuess::x_TestTableDelimiter(const string&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/util/format_guess.cpp:1081:25: warning: variable 'merge_delims' set but not used [-Wunused-but-set-variable] NStr::EMergeDelims merge_delims = NStr::eMergeDelims; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/ascii85.cpp -o ascii85.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/ascii85.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/ascii85.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/md5.cpp -o md5.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/md5.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/md5.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/util/md5.cpp: In member function 'void ncbi::CMD5::Finalize(unsigned char*)': /build/buildd/ncbi-blast+-2.2.29/c++/src/util/md5.cpp:155:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] reinterpret_cast(m_In)[14] = static_cast(m_Bits); ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/util/md5.cpp:156:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] reinterpret_cast(m_In)[15] = static_cast(m_Bits >> 32); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/file_obsolete.cpp -o file_obsolete.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/file_obsolete.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/file_obsolete.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/unicode.cpp -o unicode.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/unicode.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/unicode.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/dictionary.cpp -o dictionary.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/dictionary.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/dictionary.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/dictionary_util.cpp -o dictionary_util.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_set.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_map.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/dictionary_util.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/thread_nonstop.cpp -o thread_nonstop.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/thread_nonstop.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/thread_nonstop.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/sgml_entity.cpp -o sgml_entity.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/sgml_entity.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/sgml_entity.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/static_set.cpp -o static_set.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_set.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/static_set.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/transmissionrw.cpp -o transmissionrw.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/transmissionrw.cpp:35:0: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/miscmath.c -o miscmath.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/mutex_pool.cpp -o mutex_pool.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/mutex_pool.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/mutex_pool.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/ncbi_cache.cpp -o ncbi_cache.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/ncbi_cache.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/ncbi_cache.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/line_reader.cpp -o line_reader.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/line_reader.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/line_reader.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/util_exception.cpp -o util_exception.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/ncbi_table.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/util_exception.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/uttp.cpp -o uttp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/multi_writer.cpp -o multi_writer.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/multi_writer.cpp:32:0: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/itransaction.cpp -o itransaction.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/itransaction.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/itransaction.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/thread_pool.cpp -o thread_pool.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/thread_pool_old.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/thread_pool.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/thread_pool.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/thread_pool_ctrl.cpp -o thread_pool_ctrl.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/thread_pool_old.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/thread_pool.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/thread_pool_ctrl.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/thread_pool_ctrl.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/scheduler.cpp -o scheduler.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/scheduler.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/distribution.cpp -o distribution.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/distribution.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/distribution.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/util_misc.cpp -o util_misc.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/util_misc.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/util_misc.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/ncbi_url.cpp -o ncbi_url.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbienv.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/ncbi_url.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/histogram_binning.cpp -o histogram_binning.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:30:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/histogram_binning.cpp:43: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/table_printer.cpp -o table_printer.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/table_printer.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/table_printer.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /bin/rm -f libxutil.so .libxutil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxutil.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC random_gen.o utf8.o checksum.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o util_misc.o ncbi_url.o histogram_binning.o table_printer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libxutil.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libxutil.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libxutil.so ln -f .xutil.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.xutil.dep make[3]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util' make[2]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util' make[2]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[3]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/regexp' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/util/regexp TMPL=regexp -w mark-as-disabled make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/regexp' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/regexp' make[3]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/regexp' make[2]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/regexp' make[2]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/xregexp' /usr/bin/make[2] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/util/xregexp TMPL=xregexp -w all make[3]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/xregexp' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/xregexp/regexp.cpp -o regexp.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/xregexp/regexp.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/xregexp/regexp.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/xregexp/arg_regexp.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/xregexp/arg_regexp.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/xregexp/mask_regexp.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/xregexp/mask_regexp.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /bin/rm -f libxregexp.so .libxregexp.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxregexp.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC regexp.o arg_regexp.o mask_regexp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxncbi -lpcre /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libxregexp.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libxregexp.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libxregexp.so ln -f .xregexp.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.xregexp.dep make[3]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/xregexp' make[2]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/xregexp' make[2]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/build-system/project_tree_builder' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w all make[3]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/build-system/project_tree_builder' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbienv.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_utils.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/file_contents.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/file_contents.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_site.hpp:31, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_configure.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_configure.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_makefile.hpp:31, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_makefile.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_item.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_prj_generator.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_item.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_prj_generator.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_item.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_project_context.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_project_context.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_site.hpp:31, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_site.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_item.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_project_context.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_sln_generator.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_builder_app.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbienv.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_item.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_item.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_tree.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_tree.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_item.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_tree_builder.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbienv.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_utils.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/file_contents.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/resolver.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_src_resolver.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_utils.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbienv.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_utils.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/file_contents.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/resolver.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/resolver.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_item.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_prj_generator.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbienv.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_projects.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_projects.cpp:30: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_dlls_info.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_item.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_project_context.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/configurable_file.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/configurable_file.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/ptb_gui.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/ptb_registry.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_item.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/mac_prj_generator.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/prj_file_collector.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxutil -lxncbi -lxregexp -lpcre -lm -lpthread -o project_tree_builder strip project_tree_builder /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f project_tree_builder /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f project_tree_builder /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/project_tree_builder make[3]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/build-system/project_tree_builder' make[2]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/build-system/project_tree_builder' ********************************************************************** Running project_tree_builder. Please wait. ********************************************************************** ./build-system/project_tree_builder/project_tree_builder -dll -dtdep -conffile /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder.ini -logfile Flat.configuration_log /build/buildd/ncbi-blast+-2.2.29/c++ src Makefile.flat Done =============================================================================== NCBI C++ Toolkit documentation: doc/index.html, doc/config.html#ref_Running For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE LDFLAGS = -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O LIBRARIES: build as dynamic by default FEATURES: GCC MT LFS DLL DLL_BUILD unix WinMain Linux PACKAGES: enabled: Z BZ2 PCRE Boost.Spirit Boost.Test.Included disabled: UUID FUSE LocalZ LocalBZ2 LZO LocalPCRE GCRYPT GNUTLS OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON23 PYTHON24 PYTHON25 PERL Boost.Filesystem Boost.Regex Boost.System Boost.Test Boost.Threads C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF UNGIF GIF XPM FreeType FTGL MAGIC MIMETIC GSOAP MONGODB PROJECTS: enabled: cgi local_lbsm connext ncbi_crypt serial objects app algo disabled: bdb dbapi ctools gui gbench Tools / flags / paths: /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.mk Configuration header: /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc/ncbiconf_unix.h To build everything: cd /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build && make all_r or simply run make in the current directory Alternatively, cd /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build && make -f Makefile.flat ******* CONFIGURATION SUCCESSFUL ******* make[1]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29' debian/rules override_dh_auto_build make[1]: Entering directory '/build/buildd/ncbi-blast+-2.2.29' cd c++/BUILD/build && \ make -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" make[2]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build' /usr/bin/make -w -f Makefile.flat ptb_all.real MTARGET= make[3]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build' cd corelib/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/corelib' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/corelib' /usr/bin/make[5] (Makefile.precompile): Nothing to be done for `all'. make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/corelib' cd corelib/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=corelib UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/corelib' cd util/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util' cd util/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util' cd serial/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/serial' /usr/bin/make[4] (Makefile.serial.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.cserial.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/serial' cd serial/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=serial UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/serial' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/serial TMPL=serial -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/serial' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/hookdata.cpp -o hookdata.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/hookdata.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/hookdatakey.cpp -o hookdatakey.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/hookdatakey.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/typeinfo.cpp -o typeinfo.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/typeinfo.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/typeinfo.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objectinfo.cpp -o objectinfo.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objectinfo.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objectinfo.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objectiter.cpp -o objectiter.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objectiter.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectiter.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objectiter.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objectio.cpp -o objectio.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objectio.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectiter.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectio.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objectio.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/typeref.cpp -o typeref.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialdef.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/typeref.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/typeref.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/typeref.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/typemap.cpp -o typemap.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/typemap.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/stdtypes.cpp -o stdtypes.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialdef.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/stdtypes.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypesimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/stdtypes.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:71:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypesimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/stdtypes.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmblocks.h: In instantiation of 'bm::blocks_manager::blocks_manager(const gap_word_t*, bm::id_t, const Alloc&) [with Alloc = bm::mem_alloc; bm::gap_word_t = short unsigned int; bm::id_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:848:20: required from 'bm::bvector::bvector(bm::strategy, const gap_word_t*, bm::bvector::size_type, const Alloc&) [with Alloc = bm::mem_alloc; bm::gap_word_t = short unsigned int; bm::bvector::size_type = unsigned int]' /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/stdtypes.cpp:1670:36: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmblocks.h:649:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] char c = *vp; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/enumerated.cpp -o enumerated.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/enumerated.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/enumerated.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/enumerated.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/ptrinfo.cpp -o ptrinfo.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/typeinfo.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/ptrinfo.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/ptrinfo.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/ptrinfo.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_safe_static.hpp:48, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/autoptrinfo.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/autoptrinfo.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/continfo.cpp -o continfo.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/continfo.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/continfo.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/stltypes.cpp -o stltypes.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypesimpl.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/stltypes.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/stltypes.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/memberid.cpp -o memberid.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/memberid.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/memberlist.cpp -o memberlist.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/memberlist.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/item.cpp -o item.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/item.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/classinfob.cpp -o classinfob.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/classinfob.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/classinfob.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/member.cpp -o member.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/member.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/member.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/classinfo.cpp -o classinfo.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/classinfo.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/classinfo.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/variant.cpp -o variant.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/variant.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/variant.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/choice.cpp -o choice.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/classinfob.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/choice.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/choice.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/choice.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/choiceptr.cpp -o choiceptr.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_safe_static.hpp:48, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/choiceptr.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/choiceptr.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/choiceptr.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/aliasinfo.cpp -o aliasinfo.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/typeinfo.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/ptrinfo.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/aliasinfo.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/aliasinfo.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/aliasinfo.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objistr.cpp -o objistr.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objistr.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objistr.cpp:46: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:46:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objistr.cpp:46: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmserial.h: In instantiation of 'unsigned int bm::deserializer::deserialize(bm::deserializer::bvector_type&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>; DEC = bm::decoder; bm::deserializer::bvector_type = bm::bvector<>; bm::word_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmserial.h:1163:56: required from 'unsigned int bm::deserialize(BV&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>; bm::word_t = unsigned int]' /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objistr.cpp:1806:76: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmserial.h:1474:20: warning: variable 'glevels' set but not used [-Wunused-but-set-variable] gap_word_t glevels[bm::gap_levels]; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmserial.h: In instantiation of 'unsigned int bm::deserializer::deserialize(bm::deserializer::bvector_type&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>; DEC = bm::decoder_little_endian; bm::deserializer::bvector_type = bm::bvector<>; bm::word_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmserial.h:1175:56: required from 'unsigned int bm::deserialize(BV&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>; bm::word_t = unsigned int]' /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objistr.cpp:1806:76: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmserial.h:1474:20: warning: variable 'glevels' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objostr.cpp -o objostr.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objostr.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objostr.cpp:43: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objcopy.cpp -o objcopy.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objcopy.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objcopy.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objcopy.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/iterator.cpp -o iterator.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/iterator.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectiter.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/iterator.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/serial.cpp -o serial.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/serial.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/serial.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/delaybuf.cpp -o delaybuf.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/delaybuf.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/delaybuf.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/pack_string.cpp -o pack_string.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialdef.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/pack_string.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/pack_string.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/pack_string.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/pack_string.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/exception.cpp -o exception.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/exception.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/exception.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/exception.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objhook.cpp -o objhook.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objhook.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objhook.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objlist.cpp -o objlist.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objlist.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objstack.cpp -o objstack.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objstack.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objostrasn.cpp -o objostrasn.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objostrasn.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objostrasn.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objostrasn.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:71:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objostrasn.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objostrasn.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmblocks.h: In instantiation of 'bm::blocks_manager::blocks_manager(const gap_word_t*, bm::id_t, const Alloc&) [with Alloc = bm::mem_alloc; bm::gap_word_t = short unsigned int; bm::id_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:848:20: required from 'bm::bvector::bvector(bm::strategy, const gap_word_t*, bm::bvector::size_type, const Alloc&) [with Alloc = bm::mem_alloc; bm::gap_word_t = short unsigned int; bm::bvector::size_type = unsigned int]' /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objostrasn.cpp:348:16: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmblocks.h:649:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] char c = *vp; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objistrasn.cpp -o objistrasn.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objistrasn.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistrasn.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objistrasn.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objostrasnb.cpp -o objostrasnb.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objostrasnb.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objostrasnb.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objostrasnb.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:71:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objostrasnb.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objostrasnb.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmblocks.h: In instantiation of 'bm::blocks_manager::blocks_manager(const gap_word_t*, bm::id_t, const Alloc&) [with Alloc = bm::mem_alloc; bm::gap_word_t = short unsigned int; bm::id_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:848:20: required from 'bm::bvector::bvector(bm::strategy, const gap_word_t*, bm::bvector::size_type, const Alloc&) [with Alloc = bm::mem_alloc; bm::gap_word_t = short unsigned int; bm::bvector::size_type = unsigned int]' /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objostrasnb.cpp:513:16: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmblocks.h:649:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] char c = *vp; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objistrasnb.cpp -o objistrasnb.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objistrasnb.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistrasnb.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objistrasnb.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objostrxml.cpp -o objostrxml.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objostrxml.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objostrxml.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objostrxml.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:71:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objostrxml.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objostrxml.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmblocks.h: In instantiation of 'bm::blocks_manager::blocks_manager(const gap_word_t*, bm::id_t, const Alloc&) [with Alloc = bm::mem_alloc; bm::gap_word_t = short unsigned int; bm::id_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:848:20: required from 'bm::bvector::bvector(bm::strategy, const gap_word_t*, bm::bvector::size_type, const Alloc&) [with Alloc = bm::mem_alloc; bm::gap_word_t = short unsigned int; bm::bvector::size_type = unsigned int]' /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objostrxml.cpp:860:16: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmblocks.h:649:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] char c = *vp; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objistrxml.cpp -o objistrxml.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objistrxml.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistrxml.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objistrxml.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objistrxml.cpp: In member function 'virtual std::string ncbi::CObjectIStreamXml::ReadFileHeader()': /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objistrxml.cpp:568:33: warning: variable 'docType' set but not used [-Wunused-but-set-variable] CTempString docType = ReadName(SkipWS()); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objostrjson.cpp -o objostrjson.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objostrjson.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objostrjson.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objostrjson.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objistrjson.cpp -o objistrjson.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objistrjson.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistrjson.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objistrjson.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:71:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistrjson.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objistrjson.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmblocks.h: In instantiation of 'bm::blocks_manager::blocks_manager(const gap_word_t*, bm::id_t, const Alloc&) [with Alloc = bm::mem_alloc; bm::gap_word_t = short unsigned int; bm::id_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:848:20: required from 'bm::bvector::bvector(bm::strategy, const gap_word_t*, bm::bvector::size_type, const Alloc&) [with Alloc = bm::mem_alloc; bm::gap_word_t = short unsigned int; bm::bvector::size_type = unsigned int]' /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/objistrjson.cpp:605:16: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmblocks.h:649:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] char c = *vp; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/serializable.cpp -o serializable.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serializable.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/serializable.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/serialobject.cpp -o serialobject.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_safe_static.hpp:48, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/serialobject.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/serialobject.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/pathhook.cpp -o pathhook.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/pathhook.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/pathhook.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /bin/rm -f libxser.so .libxser.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxser.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libxser.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libxser.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libxser.so ln -f .xser.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.xser.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/serial' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/serial' cd serial/datatool/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/serial/datatool' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/serial/datatool' cd serial/datatool/ && /usr/bin/make -w APP_PROJ=datatool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/serial/datatool' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool TMPL=datatool -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/serial/datatool' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/datatool.cpp -o datatool.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/datatool.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/datatool.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/type.cpp -o type.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/type.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/type.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/namespace.cpp -o namespace.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/namespace.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/statictype.cpp -o statictype.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/exceptions.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/statictype.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/statictype.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/enumtype.cpp -o enumtype.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/type.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/enumtype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/enumtype.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/enumerated.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/enumtype.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/reftype.cpp -o reftype.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/type.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/reftype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/reftype.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/reftype.cpp:43: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/unitype.cpp -o unitype.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/unitype.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/unitype.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/blocktype.cpp -o blocktype.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/exceptions.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/blocktype.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/choicetype.cpp -o choicetype.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/exceptions.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/choicetype.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/typestr.cpp -o typestr.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/exceptions.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/typestr.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/typestr.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/ptrstr.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/ptrstr.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/stdstr.cpp -o stdstr.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/typestr.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/stdstr.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/stdstr.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/classstr.cpp -o classstr.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/exceptions.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/classstr.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/enumstr.cpp -o enumstr.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/typestr.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/enumstr.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/enumstr.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/stlstr.cpp -o stlstr.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/exceptions.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/stlstr.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/choicestr.cpp -o choicestr.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiutil.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/choicestr.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/choiceptrstr.cpp -o choiceptrstr.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/choiceptrstr.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/value.cpp -o value.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/value.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/value.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/mcontainer.cpp -o mcontainer.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/mcontainer.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/mcontainer.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/module.cpp -o module.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/module.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/moduleset.cpp -o moduleset.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/moduleset.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/generate.cpp -o generate.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/generate.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/filecode.cpp -o filecode.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/filecode.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/code.cpp -o code.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/code.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/code.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/fileutil.cpp -o fileutil.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiutil.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/fileutil.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/alexer.cpp -o alexer.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/exceptions.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/alexer.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/aparser.cpp -o aparser.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/exceptions.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/aparser.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/parser.cpp -o parser.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiutil.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/parser.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/parser.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/lexer.cpp -o lexer.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/alexer.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/lexer.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/lexer.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/exceptions.cpp -o exceptions.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/exceptions.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/exceptions.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/comments.cpp -o comments.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/comments.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/srcutil.cpp -o srcutil.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/srcutil.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/dtdaux.cpp -o dtdaux.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/dtdaux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/dtdaux.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/dtdlexer.cpp -o dtdlexer.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/alexer.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/dtdlexer.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/dtdlexer.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/dtdparser.cpp -o dtdparser.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/exceptions.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/dtdparser.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/rpcgen.cpp -o rpcgen.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/exceptions.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/rpcgen.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/aliasstr.cpp -o aliasstr.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiutil.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/aliasstr.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/xsdlexer.cpp -o xsdlexer.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/alexer.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/dtdlexer.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/xsdlexer.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/xsdlexer.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/exceptions.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/xsdparser.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/wsdllexer.cpp -o wsdllexer.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/alexer.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/dtdlexer.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/xsdlexer.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/wsdllexer.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/wsdllexer.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/exceptions.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/wsdlparser.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/exceptions.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/wsdlstr.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/traversal_pattern_match_callback.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/traversal_pattern_match_callback.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/traversal_code_generator.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/traversal_node.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/traversal_merger.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/traversal_merger.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/typestr.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/aliasstr.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/traversal_node.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/traversal_spec_file_parser.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/serial/datatool/traversal_spec_file_parser.cpp:187: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxser -lxutil -lxncbi -lm -lpthread -o datatool strip datatool /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f datatool /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f datatool /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/serial/datatool' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/serial/datatool' cd objects/general/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/general' cd /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general && /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/new_module.sh general all Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general' /usr/bin/make[4] (Makefile.general.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/general' cd objects/general/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=general UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/general' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general TMPL=general -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/general' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/general__.cpp -o general__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/Date_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/Date.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/Date.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/general__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/Date_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/Date.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/Date.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/general__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/general___.cpp -o general___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/Date_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/general___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/Date_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/general___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/uoconv.cpp -o uoconv.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/uoconv.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/uoconv.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/uoconv.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/uoconv.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:46:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/uoconv.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/uoconv.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmserial.h: In instantiation of 'unsigned int bm::deserializer::deserialize(bm::deserializer::bvector_type&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>; DEC = bm::decoder; bm::deserializer::bvector_type = bm::bvector<>; bm::word_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmserial.h:1163:56: required from 'unsigned int bm::deserialize(BV&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>; bm::word_t = unsigned int]' /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/uoconv.cpp:96:71: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmserial.h:1474:20: warning: variable 'glevels' set but not used [-Wunused-but-set-variable] gap_word_t glevels[bm::gap_levels]; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmserial.h: In instantiation of 'unsigned int bm::deserializer::deserialize(bm::deserializer::bvector_type&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>; DEC = bm::decoder_little_endian; bm::deserializer::bvector_type = bm::bvector<>; bm::word_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmserial.h:1175:56: required from 'unsigned int bm::deserialize(BV&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>; bm::word_t = unsigned int]' /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/uoconv.cpp:96:71: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmserial.h:1474:20: warning: variable 'glevels' set but not used [-Wunused-but-set-variable] In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:71:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/uoconv.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/uoconv.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmblocks.h: In instantiation of 'bm::blocks_manager::blocks_manager(const gap_word_t*, bm::id_t, const Alloc&) [with Alloc = bm::mem_alloc; bm::gap_word_t = short unsigned int; bm::id_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:848:20: required from 'bm::bvector::bvector(bm::strategy, const gap_word_t*, bm::bvector::size_type, const Alloc&) [with Alloc = bm::mem_alloc; bm::gap_word_t = short unsigned int; bm::bvector::size_type = unsigned int]' /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/uoconv.cpp:192:20: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmblocks.h:649:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] char c = *vp; ^ /bin/rm -f libgeneral.so .libgeneral.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgeneral.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC general__.o general___.o uoconv.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libgeneral.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libgeneral.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libgeneral.so ln -f .general.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.general.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/general' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/general' cd objects/biblio/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/biblio' cd /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio && /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/new_module.sh biblio all Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio' /usr/bin/make[4] (Makefile.biblio.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/biblio' cd objects/biblio/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=biblio UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/biblio' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio TMPL=biblio -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/biblio' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/biblio__.cpp -o biblio__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/biblio/Affil_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/biblio/Affil.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/Affil.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/biblio__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/biblio/Affil_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/biblio/Affil.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/Affil.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/biblio__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/biblio___.cpp -o biblio___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/Affil_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/biblio___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/Affil_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/biblio___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/Affil_.cpp:39:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/biblio___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/DOI_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CDOI_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/DOI_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("DOI", CDOI, STD, (string)) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/MedlineUID_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CMedlineUID_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/MedlineUID_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("MedlineUID", CMedlineUID, STD, (int)) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/PII_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CPII_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/PII_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("PII", CPII, STD, (string)) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/PmPid_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CPmPid_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/PmPid_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("PmPid", CPmPid, STD, (string)) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/PmcID_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CPmcID_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/PmcID_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("PmcID", CPmcID, STD, (int)) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/PmcPid_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CPmcPid_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/PmcPid_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("PmcPid", CPmcPid, STD, (string)) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/PubMedId_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CPubMedId_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/PubMedId_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("PubMedId", CPubMedId, STD, (int)) ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/citation_base.cpp -o citation_base.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/biblio/citation_base.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/citation_base.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/Date_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/Date.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/citation_base.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libbiblio.so .libbiblio.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libbiblio.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC biblio__.o biblio___.o citation_base.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lgeneral -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libbiblio.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libbiblio.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libbiblio.so ln -f .biblio.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.biblio.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/biblio' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/biblio' cd algo/blast/composition_adjustment/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make[4] (Makefile.composition_adjustment.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/composition_adjustment' cd algo/blast/composition_adjustment/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=composition_adjustment UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/composition_adjustment/compo_heap.c:142:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/composition_adjustment/redo_alignment.c:190:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/composition_adjustment/redo_alignment.c:205:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] s_DistinctAlignmentsLength(BlastCompo_Alignment * list) ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libcomposition_adjustment.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libcomposition_adjustment.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libcomposition_adjustment.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libcomposition_adjustment.so ln -f .composition_adjustment.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.composition_adjustment.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/composition_adjustment' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/composition_adjustment' cd util/tables/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/tables' /usr/bin/make[4] (Makefile.tables.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/tables' cd util/tables/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=tables UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/tables' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/util/tables TMPL=tables -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/tables' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.so .libtables.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtables.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC raw_scoremat.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libtables.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libtables.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libtables.so ln -f .tables.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.tables.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/tables' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/tables' cd connect/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/connect' /usr/bin/make[4] (Makefile.connect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.connssl.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xxconnect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xconnect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xthrserv.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/connect' cd connect/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xconnect UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/connect' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/connect TMPL=xconnect -w all /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_xconnect to make__connect_common per /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/.#lock-map. make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/connect' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_lbsm.c -o ncbi_lbsm.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_lbsm_ipc.c -o ncbi_lbsm_ipc.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_lbsmd.c -o ncbi_lbsmd.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_types.c -o ncbi_types.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_core.c -o ncbi_core.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_util.c -o ncbi_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_service.c -o ncbi_service.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_service_connector.c: In function 's_ParseHeader': /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_service_connector.c:168:17: warning: format '%n' expects argument of type 'int *', but argument 7 has type 'unsigned int *' [-Wformat=] if (sscanf(header, "%u.%u.%u.%u%n", &i1, &i2, &i3, &i4, &n) < 4 ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_service_connector.c:169:21: warning: format '%n' expects argument of type 'int *', but argument 5 has type 'unsigned int *' [-Wformat=] || sscanf(header + n, "%hu%x%n", &uuu->port, &tkt, &m) < 2 ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_local.c -o ncbi_local.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_version.c -o ncbi_version.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/connect/ncbi_socket.hpp:38:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/connect/ncbi_socket_unix.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_socket_cxx.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_core_cxx.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/connect/email_diag_handler.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/email_diag_handler.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/include/connect/ncbi_core_cxx.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/connect/ncbi_namedpipe.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/connect/ncbi_namedpipe_connector.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/connect/ncbi_conn_stream.hpp:73, from /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_conn_streambuf.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_conn_streambuf.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_conn_stream.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiutil.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_conn_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/include/connect/ncbi_core_cxx.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/connect/ncbi_namedpipe.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_namedpipe.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/include/connect/ncbi_core_cxx.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/connect/ncbi_namedpipe.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/connect/ncbi_namedpipe_connector.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_namedpipe_connector.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_process.hpp:44:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/connect/ncbi_pipe.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_pipe.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_process.hpp:44:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/connect/ncbi_pipe.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/connect/ncbi_pipe_connector.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_pipe_connector.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/include/connect/ncbi_core_cxx.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/connect/ncbi_conn_reader_writer.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_conn_reader_writer.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/connect/ncbi_socket.hpp:38:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ncbi_userhost.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /bin/rm -f libxconnect.so .libxconnect.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxconnect.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC ncbi_lbsm.o ncbi_lbsm_ipc.o ncbi_lbsmd.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxncbi -lnsl -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libxconnect.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libxconnect.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libxconnect.so ln -f .xconnect.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.xconnect.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/connect' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/connect' cd algo/blast/core/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/core' /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/core' cd algo/blast/core/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/core' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core TMPL=blast -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/core' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/aa_ungapped.c: In function 's_BlastAaWordFinder_TwoHit': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/aa_ungapped.c:489:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/aa_ungapped.c:496:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/aa_ungapped.c: In function 's_BlastAaWordFinder_OneHit': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/aa_ungapped.c:756:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/aa_ungapped.c:763:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_engine.c: In function 'BLAST_PreliminarySearchEngine': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_engine.c:1185:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_engine.c:1304:22: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] ((T_MB_IdxEndSearchIndication)( ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_engine.c:1378:10: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] ((T_MB_IdxEndSearchIndication)( ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_aascan.c: In function 'BlastChooseProteinScanSubject': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_aascan.c:572:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastAaScanSubject; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_aascan.c:575:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastSmallAaScanSubject; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_aascan.c:580:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastCompressedAaScanSubject; ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c: In function 's_BlastNaScanSubject_8_4': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:110:10: warning: variable 'lut_word_length' set but not used [-Wunused-but-set-variable] Int4 lut_word_length; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c: In function 's_NaChooseScanSubject': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:298:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastNaScanSubject_8_4; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:300:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastNaScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c: In function 's_SmallNaChooseScanSubject': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:1327:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_4_1; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:1329:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:1334:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_5_1; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:1336:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:1341:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_6_1; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:1343:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_6_2; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:1345:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:1350:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_1; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:1352:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_2; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:1354:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_3; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:1356:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:1361:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_8_4; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:1367:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:1371:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_1Mod4; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:1375:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_2Mod4; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:1379:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_3Mod4; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c: In function 's_MBChooseScanSubject': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:2585:24: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_MB_DiscWordScanSubject_TwoTemplates_1; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:2587:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_18_1; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:2589:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_21_1; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:2591:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_1; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:2599:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_9_1; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:2601:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_9_2; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:2603:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:2608:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_1; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:2610:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_2; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:2612:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_3; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:2614:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:2620:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:2623:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_1Mod4; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:2626:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_2Mod4; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:2629:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_3Mod4; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:2640:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c: In function 'BlastChooseNucleotideScanSubjectAny': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:2659:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_BlastNaScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:2662:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_BlastSmallNaScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_nascan.c:2664:12: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_MBScanSubject_Any; ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_message.c -o blast_message.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_options.c -o blast_options.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c: In function 's_IsSeedMasked': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c:469:15: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] return !(((T_Lookup_Callback)(lookup_wrap->lookup_callback)) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c: In function 'BlastNaWordFinder': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c:1584:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c:1585:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c:1597:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c:1598:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c:1605:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c:1606:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c:1619:23: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c: In function 'MB_IndexedWordFinder': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c:1685:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c:1687:25: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbGetResults)lookup_wrap->read_indexed_db; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c: In function 'BlastChooseNaExtend': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c:1757:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_MBLookup; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c:1761:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c:1764:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendAligned; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c:1766:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtend; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c:1770:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_SmallNaLookup; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c:1774:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c:1778:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastSmallNaExtendAlignedOneByte; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c:1780:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastSmallNaExtend; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c:1784:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_NaLookup; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c:1788:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c:1791:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendAligned; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/na_ungapped.c:1793:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtend; ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_stat.c -o blast_stat.o /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_stat.c:5080:15: warning: 's_CalculateNormalProbability' defined but not used [-Wunused-function] static double s_CalculateNormalProbability(double x_, double eps_) ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_traceback.c: In function 'BLAST_ComputeTraceback_MT': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_traceback.c:1378:44: warning: variable 'eff_len_params' set but not used [-Wunused-but-set-variable] const BlastEffectiveLengthsParameters* eff_len_params = NULL; ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_util.c -o blast_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/gapinfo.c -o gapinfo.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/greedy_align.c -o greedy_align.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/hspfilter_collector.c -o hspfilter_collector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/hspfilter_besthit.c -o hspfilter_besthit.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/hspfilter_culling.c -o hspfilter_culling.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/link_hsps.c -o link_hsps.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/lookup_util.c -o lookup_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/lookup_wrap.c -o lookup_wrap.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/matrix_freq_ratios.c -o matrix_freq_ratios.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/ncbi_std.c -o ncbi_std.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/ncbi_math.c -o ncbi_math.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_encoding.c -o blast_encoding.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/pattern.c -o pattern.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/phi_extend.c -o phi_extend.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_program.c -o blast_program.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/split_query.c -o split_query.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o /bin/rm -f libblast.so .libblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblast.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lcomposition_adjustment -lxconnect -ltables -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libblast.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libblast.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libblast.so ln -f .blast.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.blast.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/core' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/core' cd objects/medline/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/medline' cd /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline && /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/new_module.sh medline all Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline' /usr/bin/make[4] (Makefile.medline.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/medline' cd objects/medline/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=medline UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/medline' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline TMPL=medline -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/medline' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline/medline__.cpp -o medline__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/medline/DocRef_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/medline/DocRef.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline/DocRef.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline/medline__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/medline/DocRef_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/medline/DocRef.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline/DocRef.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline/medline__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline/medline___.cpp -o medline___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline/DocRef_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline/medline___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline/DocRef_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline/medline___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libmedline.so .libmedline.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmedline.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC medline__.o medline___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lbiblio -lgeneral -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libmedline.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libmedline.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libmedline.so ln -f .medline.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.medline.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/medline' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/medline' cd objects/pub/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/pub' cd /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/pub && /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/new_module.sh pub all Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/pub' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/pub' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/pub' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/pub' /usr/bin/make[4] (Makefile.pub.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/pub' cd objects/pub/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=pub UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/pub' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/pub TMPL=pub -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/pub' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/pub/pub__.cpp -o pub__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/pub/Pub_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/pub/Pub.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/pub/Pub.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/pub/pub__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/pub/Pub_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/pub/Pub.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/pub/Pub.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/pub/pub__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/pub/pub___.cpp -o pub___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/pub/Pub_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/pub/pub___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/pub/Pub_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/pub/pub___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libpub.so .libpub.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libpub.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC pub__.o pub___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lmedline -lbiblio -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libpub.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libpub.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libpub.so ln -f .pub.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.pub.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/pub' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/pub' cd objects/seqcode/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqcode' cd /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqcode && /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/new_module.sh seqcode all Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqcode' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqcode' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqcode' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqcode' /usr/bin/make[4] (Makefile.seqcode.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqcode' cd objects/seqcode/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqcode UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqcode' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqcode TMPL=seqcode -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqcode' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqcode/Seq_code_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqcode/Seq_code_set.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqcode/Seq_code_set.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqcode/seqcode__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqcode/Seq_code_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqcode/Seq_code_set.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqcode/Seq_code_set.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqcode/seqcode__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqcode/Seq_code_set_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqcode/seqcode___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqcode/Seq_code_set_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqcode/seqcode___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libseqcode.so .libseqcode.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqcode.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seqcode__.o seqcode___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libseqcode.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libseqcode.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libseqcode.so ln -f .seqcode.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.seqcode.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqcode' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqcode' cd util/sequtil/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/sequtil' /usr/bin/make[4] (Makefile.sequtil.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/sequtil' cd util/sequtil/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=sequtil UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/sequtil' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/util/sequtil TMPL=sequtil -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/sequtil' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/sequtil/sequtil.cpp -o sequtil.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/sequtil/sequtil.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/sequtil/sequtil_convert.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/sequtil/sequtil_convert_imp.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/util/sequtil/sequtil_convert_imp.cpp: In static member function 'static ncbi::SIZE_TYPE ncbi::CSeqConvert_imp::x_Convert4naTo2na(const char*, ncbi::TSeqPos, ncbi::TSeqPos, char*)': /build/buildd/ncbi-blast+-2.2.29/c++/src/util/sequtil/sequtil_convert_imp.cpp:701:72: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] table[static_cast(*(iter + 1)) * 2 + 1] & ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/util/sequtil/sequtil_convert_imp.cpp:729:72: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] table[static_cast(*(iter + 1)) * 3 + 1] & ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/util/sequtil/sequtil_convert_imp.cpp:735:72: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] table[static_cast(*(iter + 1)) * 3 + 1] & ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/sequtil/sequtil_manip.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/sequtil/sequtil.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/sequtil/sequtil_tables.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/sequtil/sequtil_tables.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/sequtil/sequtil_shared.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /bin/rm -f libsequtil.so .libsequtil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libsequtil.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libsequtil.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libsequtil.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libsequtil.so ln -f .sequtil.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.sequtil.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/sequtil' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/sequtil' cd objects/seq/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seq' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seq' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/Makefile.sources builddir=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -w all make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seq' status=0 ; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../$x ; \ (cd $d && /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline/medline.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqalign' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump datatool: 2.12.0 make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqalign' Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline/medline.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqblock' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump datatool: 2.12.0 make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqblock' Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline/medline.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/pub/pub.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqfeat' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump datatool: 2.12.0 make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqfeat' Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqloc' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump datatool: 2.12.0 make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqloc' Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline/medline.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqres' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump datatool: 2.12.0 make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqres' Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqtable' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump datatool: 2.12.0 make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqtable' make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seq' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seq' cd /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq && /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/new_module.sh seq all Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/pub/pub.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline/medline.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqblock/seqblock.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqalign/seqalign.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqfeat/seqfeat.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqres/seqres.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq' /usr/bin/make[4] (Makefile.seq.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seq' cd objects/seq/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seq UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seq' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq TMPL=seq -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seq' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq__.cpp -o seq__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Align_def_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Align_def.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/Align_def.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Align_def_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Align_def.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/Align_def.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include seqalign__.cpp -o seqalign__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_diag.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqalign/Dense_diag.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqalign/seqalign__.cpp:2, from seqalign__.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_diag.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqalign/Dense_diag.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqalign/seqalign__.cpp:2, from seqalign__.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqalign/Seq_align.cpp:1345:69: warning: 'void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909) [-Wdeprecated-declarations] SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand); ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqalign/Seq_align.cpp:1349:62: warning: 'void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Std_seg.hpp:79) [-Wdeprecated-declarations] (*std_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqalign/Seq_align.cpp:1354:68: warning: 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqalign/Seq_align.cpp:1328) [-Wdeprecated-declarations] (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqalign/Seq_align.cpp: In function 'ncbi::TSeqPos ncbi::objects::s_GetGapCount(const ncbi::objects::CSeq_align&, ncbi::objects::CSeq_align_Base::TDim, const ncbi::CRangeCollection&, bool)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqalign/Seq_align.cpp:1477:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (row != r) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'ncbi::TSeqPos ncbi::objects::CSeq_align::GetNumFrameshifts(ncbi::objects::CSeq_align_Base::TDim) const': /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqalign/Seq_align.cpp:1615:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (row != r) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include seqblock__.cpp -o seqblock__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqblock/EMBL_block_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqblock/EMBL_block.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqblock/EMBL_block.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqblock/seqblock__.cpp:2, from seqblock__.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqblock/EMBL_block_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqblock/EMBL_block.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqblock/EMBL_block.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqblock/seqblock__.cpp:2, from seqblock__.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include seqfeat__.cpp -o seqfeat__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:25:0, from seqfeat__.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/OrgMod.cpp: In function 'void ncbi::objects::s_ProcessInstitutionCollectionCodeLine(const ncbi::CTempString&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/OrgMod.cpp:183:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < vouch_types.size(); i++) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static ncbi::CRef ncbi::objects::CSubSource::DateFromCollectionDate(const string&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/SubSource.cpp:242:9: warning: variable 'dpm' set but not used [-Wunused-but-set-variable] int dpm = 0; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static void ncbi::objects::CSubSource::IsCorrectLatLonFormat(std::string, bool&, bool&, bool&, bool&, double&, double&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/SubSource.cpp:745:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] || processed != lat_lon.length()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/SubSource.cpp: In function 'std::string ncbi::objects::s_GetNumFromLatLonToken(std::string)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/SubSource.cpp:945:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (val_str.substr(pos + 1).length() < prec) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/SubSource.cpp:948:52: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (val_str.substr(pos + 1).length() > prec) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static bool ncbi::objects::CCountries::IsSubstringOfStringInList(const string&, const string&, int)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/SubSource.cpp:2048:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (pos2 != NPOS) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static std::string ncbi::objects::CCountries::CountryFixupItem(const string&, bool)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/SubSource.cpp:2281:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos != NPOS) ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include seqloc__.cpp -o seqloc__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include seqres__.cpp -o seqres__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqres/Byte_graph_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqres/Byte_graph.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqres/Byte_graph.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqres/seqres__.cpp:2, from seqres__.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqres/Byte_graph_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqres/Byte_graph.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqres/Byte_graph.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqres/seqres__.cpp:2, from seqres__.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include seqtable__.cpp -o seqtable__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqtable/CommonBytes_table_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqtable/CommonBytes_table.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqtable/CommonBytes_table.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqtable/seqtable__.cpp:2, from seqtable__.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqtable/CommonBytes_table_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqtable/CommonBytes_table.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqtable/CommonBytes_table.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqtable/seqtable__.cpp:2, from seqtable__.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:71:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqtable/CommonBytes_table_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqtable/CommonBytes_table.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqtable/CommonBytes_table.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqtable/seqtable__.cpp:2, from seqtable__.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmblocks.h: In instantiation of 'bm::blocks_manager::blocks_manager(const gap_word_t*, bm::id_t, const Alloc&) [with Alloc = bm::mem_alloc; bm::gap_word_t = short unsigned int; bm::id_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:848:20: required from 'bm::bvector::bvector(bm::strategy, const gap_word_t*, bm::bvector::size_type, const Alloc&) [with Alloc = bm::mem_alloc; bm::gap_word_t = short unsigned int; bm::bvector::size_type = unsigned int]' /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqtable/SeqTable_multi_data.cpp:203:54: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmblocks.h:649:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] char c = *vp; ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:46:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqtable/CommonBytes_table_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqtable/CommonBytes_table.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqtable/CommonBytes_table.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqtable/seqtable__.cpp:2, from seqtable__.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmserial.h: In instantiation of 'unsigned int bm::deserializer::deserialize(bm::deserializer::bvector_type&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>; DEC = bm::decoder; bm::deserializer::bvector_type = bm::bvector<>; bm::word_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmserial.h:1163:56: required from 'unsigned int bm::deserialize(BV&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>; bm::word_t = unsigned int]' /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqtable/SeqTable_multi_data.cpp:204:72: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmserial.h:1474:20: warning: variable 'glevels' set but not used [-Wunused-but-set-variable] gap_word_t glevels[bm::gap_levels]; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmserial.h: In instantiation of 'unsigned int bm::deserializer::deserialize(bm::deserializer::bvector_type&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>; DEC = bm::decoder_little_endian; bm::deserializer::bvector_type = bm::bvector<>; bm::word_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmserial.h:1175:56: required from 'unsigned int bm::deserialize(BV&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>; bm::word_t = unsigned int]' /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqtable/SeqTable_multi_data.cpp:204:72: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmserial.h:1474:20: warning: variable 'glevels' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq___.cpp -o seq___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/Align_def_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/Align_def_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/Align_def_.cpp:39:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/Heterogen_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CHeterogen_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/Heterogen_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Heterogen", CHeterogen, STD, (string)) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/IUPACaa_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CIUPACaa_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/IUPACaa_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("IUPACaa", CIUPACaa, StringStore, ()) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/IUPACna_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CIUPACna_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/IUPACna_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("IUPACna", CIUPACna, StringStore, ()) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/NCBI2na_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CNCBI2na_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/NCBI2na_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("NCBI2na", CNCBI2na, STL_CHAR_vector, (char)) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/NCBI4na_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CNCBI4na_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/NCBI4na_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("NCBI4na", CNCBI4na, STL_CHAR_vector, (char)) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/NCBI8aa_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CNCBI8aa_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/NCBI8aa_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("NCBI8aa", CNCBI8aa, STL_CHAR_vector, (char)) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/NCBI8na_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CNCBI8na_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/NCBI8na_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("NCBI8na", CNCBI8na, STL_CHAR_vector, (char)) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/NCBIeaa_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CNCBIeaa_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/NCBIeaa_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("NCBIeaa", CNCBIeaa, StringStore, ()) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/NCBIpaa_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CNCBIpaa_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/NCBIpaa_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("NCBIpaa", CNCBIpaa, STL_CHAR_vector, (char)) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/NCBIpna_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CNCBIpna_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/NCBIpna_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("NCBIpna", CNCBIpna, STL_CHAR_vector, (char)) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/NCBIstdaa_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CNCBIstdaa_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/NCBIstdaa_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("NCBIstdaa", CNCBIstdaa, STL_CHAR_vector, (char)) ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include seqalign___.cpp -o seqalign___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqalign/seqalign___.cpp:2, from seqalign___.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqalign/seqalign___.cpp:2, from seqalign___.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include seqblock___.cpp -o seqblock___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqblock/seqblock___.cpp:2, from seqblock___.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqblock/seqblock___.cpp:2, from seqblock___.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include seqfeat___.cpp -o seqfeat___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, from seqfeat___.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, from seqfeat___.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, from seqfeat___.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/PCRPrimerName_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CPCRPrimerName_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/PCRPrimerName_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("PCRPrimerName", CPCRPrimerName, STD, (string)) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/PCRPrimerSeq_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CPCRPrimerSeq_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqfeat/PCRPrimerSeq_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("PCRPrimerSeq", CPCRPrimerSeq, STD, (string)) ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include seqloc___.cpp -o seqloc___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqloc/seqloc___.cpp:2, from seqloc___.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqloc/seqloc___.cpp:2, from seqloc___.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqloc/seqloc___.cpp:2, from seqloc___.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqloc/PDB_mol_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CPDB_mol_id_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqloc/PDB_mol_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("PDB-mol-id", CPDB_mol_id, STD, (string)) ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include seqres___.cpp -o seqres___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqres/seqres___.cpp:2, from seqres___.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqres/seqres___.cpp:2, from seqres___.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include seqtable___.cpp -o seqtable___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqtable/CommonBytes_table_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqtable/seqtable___.cpp:2, from seqtable___.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqtable/CommonBytes_table_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/../seqtable/seqtable___.cpp:2, from seqtable___.cpp:1: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_data_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_data.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seqport_util.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seqport_util.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_data_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_data.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seqport_util.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seqport_util.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seqport_util.cpp: In member function 'const string& ncbi::objects::CSeqportUtil_implementation::GetCodeOrName(ncbi::objects::ESeq_code_type, ncbi::objects::CSeqportUtil_implementation::TIndex, bool)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seqport_util.cpp:5847:47: warning: typedef 'Ttables' locally defined but not used [-Wunused-local-typedefs] typedef list > Ttables; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seqport_util.cpp:5848:47: warning: typedef 'Tcodes' locally defined but not used [-Wunused-local-typedefs] typedef list > Tcodes; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seqport_util.cpp: In member function 'ncbi::objects::CSeqportUtil::TIndex ncbi::objects::CSeqportUtil_implementation::GetIndex(ncbi::objects::ESeq_code_type, const string&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seqport_util.cpp:5875:47: warning: typedef 'Ttables' locally defined but not used [-Wunused-local-typedefs] typedef list > Ttables; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seqport_util.cpp:5876:47: warning: typedef 'Tcodes' locally defined but not used [-Wunused-local-typedefs] typedef list > Tcodes; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_id_tree.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/Date_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/Date.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_id_tree.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_id_tree.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_id_handle.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_id_handle.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_mapper.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_id_mapper.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_mapper.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_id_mapper.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_loc_mapper_base.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_loc_mapper_base.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_loc_mapper_base.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_loc_mapper_base.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_align_mapper_base.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_align_mapper_base.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_align_mapper_base.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_align_mapper_base.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::InitExon(const ncbi::objects::CSpliced_seg&, const ncbi::objects::CSpliced_exon&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_align_mapper_base.cpp:689:10: warning: unused variable 'is_prot_prod' [-Wunused-variable] bool is_prot_prod = ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seqlocinfo.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seqlocinfo.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seqlocinfo.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seqlocinfo.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/sofa_type.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/sofa_map.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/sofa_type.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/sofa_map.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_loc_from_string.cpp:35:0: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_loc_from_string.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_loc_from_string.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libseq.so .libseq.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseq.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lseqcode -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libseq.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libseq.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libseq.so ln -f .seq.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.seq.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seq' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seq' cd objects/blastdb/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blastdb' cd /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastdb && /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/new_module.sh blastdb all Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastdb' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastdb' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastdb' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastdb' /usr/bin/make[4] (Makefile.blastdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blastdb' cd objects/blastdb/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blastdb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastdb TMPL=blastdb -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastdb/Blast_db_mask_info_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastdb/Blast_db_mask_info.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastdb/Blast_db_mask_info.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastdb/blastdb__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastdb/Blast_db_mask_info_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastdb/Blast_db_mask_info.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastdb/Blast_db_mask_info.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastdb/blastdb__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastdb/blastdb___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastdb/blastdb___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libblastdb.so .libblastdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastdb.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blastdb__.o blastdb___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lseq -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libblastdb.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libblastdb.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libblastdb.so ln -f .blastdb.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.blastdb.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blastdb' cd util/creaders/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/creaders' /usr/bin/make[4] (Makefile.creaders.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/creaders' cd util/creaders/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=creaders UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/creaders' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/util/creaders TMPL=creaders -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/creaders' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/creaders/alnread.c -o alnread.o /bin/rm -f libcreaders.so .libcreaders.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libcreaders.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC alnread.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libcreaders.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libcreaders.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libcreaders.so ln -f .creaders.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.creaders.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/creaders' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/creaders' cd objects/genomecoll/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/genomecoll' cd /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/genomecoll && /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/new_module.sh genome_collection all Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqfeat/seqfeat.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/genomecoll' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/genomecoll' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/genomecoll' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/genomecoll' cd /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/genomecoll && /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/new_module.sh gencoll_client all Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/genomecoll' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/genomecoll' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/genomecoll' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/genomecoll' /usr/bin/make[4] (Makefile.genome_collection.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.gencoll_client.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/genomecoll' cd objects/genomecoll/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=genome_collection UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/genomecoll' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/genomecoll TMPL=genome_collection -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/genomecoll' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/genomecoll/GC_Assemblies_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/genomecoll/GC_Assemblies.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/genomecoll/GC_Assemblies.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/genomecoll/genome_collection__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/genomecoll/GC_Assemblies_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/genomecoll/GC_Assemblies.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/genomecoll/GC_Assemblies.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/genomecoll/genome_collection__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/genomecoll/genome_collection___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/genomecoll/genome_collection___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libgenome_collection.so .libgenome_collection.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgenome_collection.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC genome_collection__.o genome_collection___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libgenome_collection.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libgenome_collection.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libgenome_collection.so ln -f .genome_collection.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.genome_collection.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/genomecoll' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/genomecoll' cd objects/seqset/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqset' cd /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset && /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/new_module.sh seqset all Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/medline/medline.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset' /usr/bin/make[4] (Makefile.seqset.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqset' cd objects/seqset/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqset UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqset' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset TMPL=seqset -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqset' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset/seqset__.cpp -o seqset__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialdef.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/typeref.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serial.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset/Bioseq_set.cpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset/seqset__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset/Bioseq_set.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset/seqset__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset/seqset___.cpp -o seqset___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset/Bioseq_set_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset/seqset___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset/Bioseq_set_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset/seqset___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset/gb_release_file.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset/gb_release_file.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libseqset.so .libseqset.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqset.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seqset__.o seqset___.o gb_release_file.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libseqset.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libseqset.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libseqset.so ln -f .seqset.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.seqset.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqset' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqset' cd objects/scoremat/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/scoremat' cd /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/scoremat && /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/new_module.sh scoremat all Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset/seqset.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/scoremat' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/scoremat' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/scoremat' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/scoremat' /usr/bin/make[4] (Makefile.scoremat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/scoremat' cd objects/scoremat/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=scoremat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/scoremat' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/scoremat TMPL=scoremat -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/scoremat' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/scoremat/BlockProperty_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/scoremat/BlockProperty.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/scoremat/BlockProperty.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/scoremat/scoremat__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/scoremat/BlockProperty_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/scoremat/BlockProperty.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/scoremat/BlockProperty.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/scoremat/scoremat__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/scoremat/BlockProperty_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/scoremat/scoremat___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/scoremat/BlockProperty_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/scoremat/scoremat___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libscoremat.so .libscoremat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libscoremat.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC scoremat__.o scoremat___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libscoremat.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libscoremat.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libscoremat.so ln -f .scoremat.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.scoremat.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/scoremat' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/scoremat' cd objects/seqedit/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqedit' cd /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqedit && /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/new_module.sh seqedit all Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset/seqset.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqalign/seqalign.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqfeat/seqfeat.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqedit' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqedit' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqedit' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqedit' /usr/bin/make[4] (Makefile.seqedit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqedit' cd objects/seqedit/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqedit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqedit' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqedit TMPL=seqedit -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqedit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqedit/SeqEdit_Cmd_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqedit/SeqEdit_Cmd.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqedit/SeqEdit_Cmd.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqedit/seqedit__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqedit/SeqEdit_Cmd_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqedit/SeqEdit_Cmd.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqedit/SeqEdit_Cmd.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqedit/seqedit__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqedit/seqedit___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqedit/seqedit___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libseqedit.so .libseqedit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqedit.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seqedit__.o seqedit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libseqedit.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libseqedit.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libseqedit.so ln -f .seqedit.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.seqedit.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqedit' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqedit' cd objmgr/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr' /usr/bin/make[4] (Makefile.objmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr' cd objmgr/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=objmgr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr TMPL=objmgr -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/objmgr_exception.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_table_setters.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_table_setters.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_table_setters.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_table_info.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_table_info.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_table_info.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_table_info.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_annot_info.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_annot_info.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bio_object_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_annot_info.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_annot_info.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/table_field.cpp -o table_field.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_table_info.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/table_field.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_table_info.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/table_field.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_map.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_map_switch.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_map_switch.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_map.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_map_switch.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_map_switch.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/snp_annot_info.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/snp_annot_info.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/snp_annot_info.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/annot_collector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_types_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_types_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_selector.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_types_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_types_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_loc_cvt.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_loc_cvt.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_loc_cvt.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_loc_cvt.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_loc_cvt.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_selector.cpp -o annot_selector.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_name.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_selector.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_selector.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_selector.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_descr_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_descr.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_descr_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_descr_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_descr_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_descr.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_descr_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_descr_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/feat_ci.cpp -o feat_ci.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/feat_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/feat_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_selector.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_types_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/feat_ci.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/feat_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/graph_ci.cpp -o graph_ci.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/annot_collector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_types_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/graph_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/graph_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_selector.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_types_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/graph_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/graph_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_object.cpp -o annot_object.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/annot_object.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_object.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/annot_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_object.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/annot_object_index.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_object_index.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/annot_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/annot_object_index.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_object_index.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_ci.cpp -o annot_ci.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/annot_collector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_types_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_selector.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_types_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/tse_info.cpp -o tse_info.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info_object.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/data_source.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/tse_info.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bio_object_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/data_source.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/tse_info.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info_object.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/tse_info_object.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bio_object_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/tse_info_object.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info_object.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_entry_info.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bio_object_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_entry_info.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/bioseq_base_info.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_base_info.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bio_object_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/bioseq_base_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_base_info.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info_object.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_set_info.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bio_object_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_set_info.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/bioseq_base_info.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/bioseq_info.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_info.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bio_object_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/bioseq_base_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/bioseq_info.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_info.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/data_source.cpp -o data_source.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info_object.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/data_source.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/data_source.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bio_object_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/data_source.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/data_source.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/priority.cpp -o priority.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/priority.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/priority.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/priority.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/priority.cpp:36:0: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/prefetch_impl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/prefetch_impl.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/prefetch_impl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/prefetch_impl.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/prefetch_impl.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/objmgr_exception.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/prefetch_manager.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/prefetch_manager_impl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/prefetch_manager_impl.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/prefetch_manager.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/prefetch_actions.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/prefetch_actions.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/prefetch_actions.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/prefetch_actions.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/prefetch_actions.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/scope.cpp -o scope.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/scope.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/scope.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/scope.cpp:46: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/heap_scope.cpp -o heap_scope.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/heap_scope.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/heap_scope.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/heap_scope.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/heap_scope.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/scope_impl.cpp -o scope_impl.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/scope_impl.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/scope_impl.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/scope_impl.cpp:52:0: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/scope_info.cpp -o scope_info.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/scope_info.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/scope_info.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/scope_info.cpp:35:0: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/tse_handle.cpp -o tse_handle.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/tse_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/tse_handle.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/tse_handle.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/tse_handle.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/tse_handle.cpp:37:0: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_map.cpp -o seq_map.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_map.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_map.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_map.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_map.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_map.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_map_ci.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_map_ci.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_map.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_map_ci.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_map_ci.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_entry_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_entry_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqset/Bioseq_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqset/Bioseq_set.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_set_handle.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_entry_ci.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_entry_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_entry_ci.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_annot_ci.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_annot_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_annot_ci.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_annot_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/annot_collector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_types_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_table_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_table_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_selector.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_types_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_table_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_table_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_entry_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_entry_handle.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_entry_handle.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_entry_handle.cpp:43: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_set_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_set_handle.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqset/Bioseq_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqset/Bioseq_set.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_set_handle.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_set_handle.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_set_handle.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_handle.cpp -o bioseq_handle.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_handle.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_handle.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_handle.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_annot_handle.cpp -o seq_annot_handle.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_annot_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_annot_handle.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/tse_handle.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_annot_handle.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_annot_handle.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_annot_handle.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/align_ci.cpp -o align_ci.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/align_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/align_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_selector.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_types_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/align_ci.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/align_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/data_loader.cpp -o data_loader.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/data_loader.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/data_loader.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/data_loader.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/handle_range.cpp -o handle_range.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/handle_range.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/handle_range.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/handle_range.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/handle_range.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/objmgr_exception.cpp -o objmgr_exception.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/objmgr_exception.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/handle_range_map.cpp -o handle_range_map.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/handle_range.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/handle_range_map.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/handle_range_map.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/handle_range.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/handle_range_map.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/handle_range_map.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/object_manager.cpp -o object_manager.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/object_manager.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/object_manager.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/object_manager.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/object_manager.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_vector.cpp -o seq_vector.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_vector.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_vector.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_vector_ci.cpp -o seq_vector_ci.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_vector_ci.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_vector_ci.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seqdesc_ci.cpp -o seqdesc_ci.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_descr_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_descr.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_descr_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seqdesc_ci.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seqdesc_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_descr_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_descr.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_descr_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seqdesc_ci.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seqdesc_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_split_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/tse_split_info.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_split_info.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/tse_split_info.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_chunk_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/tse_chunk_info.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_chunk_info.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/tse_chunk_info.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_ci.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_ci.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_ci.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_type_index.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/annot_type_index.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_type_index.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_loc_mapper.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_loc_mapper.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_loc_mapper.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_loc_mapper.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/synonyms.hpp:38:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_loc_mapper.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_align_mapper.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_align_mapper.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_align_mapper.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_align_mapper.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_collector.cpp -o annot_collector.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/annot_collector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_collector.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_selector.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_collector.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/synonyms.hpp:38:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_collector.cpp:50: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/data_loader_factory.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/data_loader_factory.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/data_loader_factory.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/data_loader_factory.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/mapped_feat.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/mapped_feat.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_feat_handle.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/mapped_feat.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/mapped_feat.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_feat_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_feat_handle.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_feat_handle.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_feat_handle.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_feat_handle.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_graph_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_graph_handle.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqres/Seq_graph_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqres/Seq_graph.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_graph_handle.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_graph_handle.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_graph_handle.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_align_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_align_handle.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_align_handle.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_align_handle.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_align_handle.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info_object.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/tse_assigner.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bio_object_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/tse_assigner.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/scope_transaction.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/scope_transaction.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/scope_transaction.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/scope_transaction_impl.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/scope_transaction_impl.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/scope_transaction_impl.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/edit_commands_impl.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/edit_commands_impl.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/edit_commands_impl.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/edit_commands_impl.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/bioseq_edit_commands.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_edit_commands.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/bioseq_edit_commands.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_edit_commands.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/bioseq_edit_commands.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_edit_commands.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_entry_edit_commands.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_entry_edit_commands.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/seq_entry_edit_commands.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_impl.hpp:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/edit_saver.cpp -o edit_saver.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/edit_saver.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/edit_saver.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_inst.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/edit_saver.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/edit_saver.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/unsupp_editsaver.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/unsupp_editsaver.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_inst.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/edit_saver.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/unsupp_editsaver.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/unsupp_editsaver.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/edits_db_engine.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/edits_db_engine.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/edits_db_saver.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/edits_db_saver.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_inst.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/edit_saver.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/unsupp_editsaver.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/edits_db_saver.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/edits_db_saver.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_finder.cpp -o annot_finder.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/annot_finder.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_finder.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bio_object_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/annot_finder.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libxobjmgr.so .libxobjmgr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjmgr.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libxobjmgr.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libxobjmgr.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libxobjmgr.so ln -f .xobjmgr.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.xobjmgr.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr' cd objtools/blast/seqdb_reader/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make[4] (Makefile.seqdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader' cd objtools/blast/seqdb_reader/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqdb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdb.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdb.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbbitset.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbbitset.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbfilter.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbfilter.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp:50:0: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbalias.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp:55: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/metareg.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In member function 'bool ncbi::CSeqDB_IdRemapper::GetDesc(int, std::string&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:1992:29: warning: typedef 'TIdMap' locally defined but not used [-Wunused-local-typedefs] typedef map TIdMap; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'ncbi::CRef ncbi::CSeqDBVol::x_GetTaxDefline(int, int, ncbi::CSeqDBLockHold&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1005:43: warning: typedef 'TBDLLIter' locally defined but not used [-Wunused-local-typedefs] typedef TBDLL::iterator TBDLLIter; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1006:43: warning: typedef 'TBDLLConstIter' locally defined but not used [-Wunused-local-typedefs] typedef TBDLL::const_iterator TBDLLConstIter; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'std::list > ncbi::CSeqDBVol::x_GetTaxonomy(int, int, ncbi::CRef, ncbi::CSeqDBLockHold&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1058:43: warning: typedef 'TBDLLIter' locally defined but not used [-Wunused-local-typedefs] typedef TBDLL::iterator TBDLLIter; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp:39:0: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdboidlist.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'int ncbi::CSeqDBIsam::x_DiffCharLease(const string&, ncbi::CSeqDBMemLease&, const string&, ncbi::CSeqDBIsam::TIndx, Uint4, ncbi::CSeqDBIsam::TIndx, bool, ncbi::CSeqDBLockHold&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:450:9: warning: variable 'result' set but not used [-Wunused-but-set-variable] int result(-1); ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector >&, std::vector >&, std::vector&, ncbi::CSeqDBLockHold&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:943:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] int found_short(-1); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbtax.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/impl/seqdbtax.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp: In member function 'void ncbi::CSeqDBTaxInfo::x_Init(ncbi::CSeqDBLockHold&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:59:32: warning: typedef 'TIndx' locally defined but not used [-Wunused-local-typedefs] typedef CSeqDBAtlas::TIndx TIndx; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbblob.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/column_reader.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/column_reader.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libseqdb.so .libseqdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqdb.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lblastdb -lxobjmgr -lseq -lgeneral -lxser -lsequtil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libseqdb.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libseqdb.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libseqdb.so ln -f .seqdb.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.seqdb.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader' cd objects/submit/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/submit' cd /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/submit && /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/new_module.sh submit all Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset/seqset.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/submit' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/submit' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/submit' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/submit' /usr/bin/make[4] (Makefile.submit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/submit' cd objects/submit/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=submit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/submit' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/submit TMPL=submit -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/submit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/submit/submit__.cpp -o submit__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/submit/Contact_info_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/submit/Contact_info.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/submit/Contact_info.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/submit/submit__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/submit/Contact_info_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/submit/Contact_info.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/submit/Contact_info.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/submit/submit__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/submit/submit___.cpp -o submit___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/submit/Contact_info_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/submit/submit___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/submit/Contact_info_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/submit/submit___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libsubmit.so .libsubmit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libsubmit.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC submit__.o submit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lseqset -lseq -lbiblio -lgeneral -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libsubmit.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libsubmit.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libsubmit.so ln -f .submit.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.submit.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/submit' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/submit' cd objtools/readers/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/readers' /usr/bin/make[4] (Makefile.xobjread.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xobjreadex.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/readers' cd objtools/readers/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xobjread UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/readers' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers TMPL=xobjread -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/readers' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/read_util.cpp -o read_util.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/read_util.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/read_util.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/format_guess_ex.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/format_guess_ex.cpp:45: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/format_guess_ex.cpp: In member function 'bool ncbi::CFormatGuessEx::x_TryRmo()': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/format_guess_ex.cpp:228:50: warning: 'static ncbi::objects::CRmReader* ncbi::objects::CRmReader::OpenReader(ncbi::CNcbiIstream&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/rm_reader.hpp:750) [-Wdeprecated-declarations] Reader = CRmReader::OpenReader(m_LocalBuffer); ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/format_guess_ex.cpp:229:32: warning: 'void ncbi::objects::CRmReader::Read(ncbi::CRef, ncbi::objects::IRmReaderFlags::TFlags, size_t)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/rm_reader.hpp:752) [-Wdeprecated-declarations] Reader->Read(Result, Flags); ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/format_guess_ex.cpp:230:35: warning: 'static void ncbi::objects::CRmReader::CloseReader(ncbi::objects::CRmReader*)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/rm_reader.hpp:751) [-Wdeprecated-declarations] CRmReader::CloseReader(Reader); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/agp_util.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/acc_pattern.cpp:43: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/agp_read.cpp -o agp_read.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/agp_read.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/agp_read.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/agp_read.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/agp_read.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/agp_read.cpp: In function 'ncbi::CRef ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/agp_read.cpp:58:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/agp_read.hpp:61) [-Wdeprecated-declarations] AgpRead(is, entries, component_id_rule, set_gap_data, component_types); ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/agp_read.cpp: In function 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/agp_read.cpp:74:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/agp_read.hpp:52) [-Wdeprecated-declarations] AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/agp_util.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/agp_seq_entry.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/agp_seq_entry.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/agp_seq_entry.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/agp_seq_entry.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/agp_util.cpp -o agp_util.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/agp_util.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/agp_util.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/agp_validate_reader.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/agp_validate_reader.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/agp_validate_reader.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/aln_reader.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/aln_reader.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/aln_reader.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/aln_reader.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/bed_reader.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/bed_reader.cpp:44: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/bed_reader.cpp: In member function 'void ncbi::objects::CBedReader::xSetFeatureLocationBlock(ncbi::CRef&, const std::vector >&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/bed_reader.cpp:643:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (vals.size() != blockCount) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/bed_reader.cpp:671:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (vals.size() != blockCount) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/cigar.cpp -o cigar.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/cigar.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/cigar.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/cigar.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/cigar.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/fasta.cpp -o fasta.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/fasta.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/fasta.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/fasta.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/fasta.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/fasta_aln_builder.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/fasta_aln_builder.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/fasta_aln_builder.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/getfeature.cpp -o getfeature.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/range.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/getfeature.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/featuredump.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/getfeature.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/getfeature.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gff_reader.cpp -o gff_reader.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiutil.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/gff_reader.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gff_reader.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/gff_reader.hpp:48, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gff_reader.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/reader_data.cpp -o reader_data.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/reader_data.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/microarray_reader.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/microarray_reader.cpp:44: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/microarray_reader.cpp:86:0: /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/microarray_reader.hpp: In constructor 'ncbi::objects::CMicroArrayReader::CMicroArrayReader(int)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/microarray_reader.hpp:119:10: warning: 'ncbi::objects::CMicroArrayReader::m_usescore' will be initialized after [-Wreorder] bool m_usescore; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/microarray_reader.hpp:117:12: warning: 'std::string ncbi::objects::CMicroArrayReader::m_currentId' [-Wreorder] string m_currentId; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/microarray_reader.cpp:99:1: warning: when initialized here [-Wreorder] CMicroArrayReader::CMicroArrayReader( ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/phrap.cpp -o phrap.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/range.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/phrap.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/Date_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/Date.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/phrap.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/reader_base.cpp -o reader_base.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/reader_base.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/reader_base.cpp:44: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/readfeat.cpp -o readfeat.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/readfeat.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/readfeat.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/rm_reader.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/rm_reader.cpp:43: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/wiggle_reader.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/Object_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/Object_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/wiggle_reader.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/wiggle_reader.cpp:58:0: /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/wiggle_reader.hpp: In constructor 'ncbi::objects::CWiggleReader::CWiggleReader(ncbi::objects::CWiggleReader::TFlags)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/wiggle_reader.hpp:462:16: warning: 'ncbi::objects::CWiggleReader::m_TrackType' will be initialized after [-Wreorder] ETrackType m_TrackType; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/wiggle_reader.hpp:451:10: warning: 'bool ncbi::objects::CWiggleReader::m_OmitZeros' [-Wreorder] bool m_OmitZeros; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/wiggle_reader.cpp:68:1: warning: when initialized here [-Wreorder] CWiggleReader::CWiggleReader( ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gff3_sofa.cpp -o gff3_sofa.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gff3_sofa.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/gff3_sofa.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gff3_sofa.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gff3_reader.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gff3_reader.cpp:44: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gff3_reader.cpp: In member function 'virtual bool ncbi::objects::CGff3Reader::xUpdateAnnotCds(const ncbi::objects::CGff2Record&, ncbi::CRef, ncbi::CRef, ncbi::objects::IMessageListener*)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gff3_reader.cpp:285:33: warning: unused variable 'loc' [-Wunused-variable] const CSeq_loc& loc = pF->GetLocation(); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gtf_reader.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gtf_reader.cpp:44: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gff2_data.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/Object_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/Object_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gff2_data.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gff2_reader.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gff2_reader.cpp:44: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::x_ReadLine(ncbi::ILineReader&, std::string&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gff2_reader.cpp:279:47: warning: 'static ncbi::CTempString ncbi::NStr::TruncateSpaces(const ncbi::CTempString&, ncbi::NStr::ETrunc)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:2017) [-Wdeprecated-declarations] strLine = NStr::TruncateSpaces( *++lr ); ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::x_FeatureTrimQualifiers(const ncbi::objects::CGff2Record&, ncbi::CRef)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gff2_reader.cpp:874:19: warning: unused variable 'attrs' [-Wunused-variable] const TAttrs& attrs = record.Attributes(); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gvf_reader.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/gvf_reader.cpp:44: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/vcf_reader.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/vcf_reader.cpp:44: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/best_feat_finder.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/best_feat_finder.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqfeat/Seq_feat_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqfeat/Seq_feat.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/best_feat_finder.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/source_mod_parser.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/source_mod_parser.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/User_object_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/User_object.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/source_mod_parser.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/source_mod_parser.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/source_mod_parser.cpp: In member function 'void ncbi::objects::CSourceModParser::x_ApplyMods(ncbi::CAutoInitRef&, ncbi::CTempString)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/source_mod_parser.cpp:598:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( colon_location == string::npos ) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/fasta_exception.cpp:35:0: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/fasta_exception.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/agp_converter.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/agp_seq_entry.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/agp_converter.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/agp_converter.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/agp_converter.cpp: In member function 'void ncbi::CAgpConverter::x_SetChromosomeNameInSourceSubtype(ncbi::CRef, const string&) const': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/agp_converter.cpp:659:51: warning: 'static std::string ncbi::NStr::UIntToString(long unsigned int, ncbi::NStr::TNumToStringFlags, int)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:4565) [-Wdeprecated-declarations] NStr::UIntToString(source_descs.size()) + ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/message_listener.cpp -o message_listener.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/message_listener.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/message_listener.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/line_error.cpp -o line_error.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/line_error.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/readers/line_error.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /bin/rm -f libxobjread.so .libxobjread.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjread.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC read_util.o format_guess_ex.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o aln_reader.o bed_reader.o cigar.o fasta.o fasta_aln_builder.o getfeature.o gff_reader.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_sofa.o gff3_reader.o gtf_reader.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o message_listener.o line_error.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lsubmit -lseqset -lseq -lpub -lgeneral -lxser -lcreaders -lsequtil -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libxobjread.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libxobjread.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libxobjread.so ln -f .xobjread.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.xobjread.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/readers' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/readers' cd objmgr/util/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr/util' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr/util' cd objmgr/util/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr/util' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util TMPL=util -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr/util' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/weight.cpp -o weight.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/weight.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/weight.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/sequence.cpp -o sequence.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/sequence.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/sequence.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/synonyms.hpp:38:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/sequence.cpp:45: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/feature.cpp -o feature.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/feature.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/feature.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/seqtitle.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/seqtitle.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/seqtitle.cpp: In function 'bool ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq&, std::string*, ncbi::objects::sequence::TGetTitleFlags)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/seqtitle.cpp:672:16: warning: variable 'search_depth' set but not used [-Wunused-but-set-variable] size_t search_depth = 0; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/create_defline.cpp -o create_defline.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/strsearch.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/util/create_defline.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/create_defline.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/MolInfo_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/MolInfo.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/util/create_defline.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/create_defline.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/util/obj_sniff.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/obj_sniff.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/util/obj_sniff.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/obj_sniff.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/seq_loc_util.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/seq_loc_util.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/synonyms.hpp:38:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/seq_loc_util.cpp:57: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::value_type*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:144:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp: In member function 'void ncbi::objects::CDeleteQueue::Put(const key_type&, const value_type&, ncbi::objects::CDeleteQueue::TUnlockSet*)': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/scope_info.hpp:168:49: warning: typedef 'insert_type' locally defined but not used [-Wunused-local-typedefs] typedef typename TIndex::value_type insert_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/seq_loc_util.cpp: In function 'Int8 ncbi::objects::sequence::s_TestForOverlapEx(const ncbi::objects::CSeq_loc&, const ncbi::objects::CSeq_loc&, ncbi::objects::sequence::EOverlapType, ncbi::objects::sequence::EOverlapFlags, ncbi::TSeqPos, ncbi::objects::CScope*)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/seq_loc_util.cpp:1739:26: warning: typedef 'TRange8' locally defined but not used [-Wunused-local-typedefs] typedef CRange TRange8; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/seq_align_util.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/seq_align_util.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/util/sequence.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/seq_trimmer.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/util/sequence.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/seq_trimmer.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/util/sequence.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/util/sequence.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libxobjutil.so .libxobjutil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjutil.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC weight.o sequence.o feature.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxobjmgr -lseqset -lseq -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libxobjutil.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libxobjutil.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libxobjutil.so ln -f .xobjutil.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.xobjutil.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr/util' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr/util' cd objtools/seqmasks_io/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make[4] (Makefile.seqmasks_io.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/seqmasks_io' cd objtools/seqmasks_io/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqmasks_io UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/seqmasks_io/mask_cmdline_args.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/fasta.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/fasta.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seqdesc.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_writer.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seqdesc.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_writer.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/seqmasks_io/mask_writer_int.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_writer_int.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/seqmasks_io/mask_writer_int.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_writer_int.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqmasks_io.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lseqdb -lxobjread -lxobjutil -lxobjmgr -lblastdb -lseqset -lseq -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libseqmasks_io.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libseqmasks_io.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libseqmasks_io.so ln -f .seqmasks_io.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.seqmasks_io.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/seqmasks_io' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/seqmasks_io' cd objects/variation/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/variation' cd /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/variation && /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/new_module.sh variation all Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqfeat/seqfeat.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/pub/pub.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/variation' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/variation' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/variation' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/variation' /usr/bin/make[4] (Makefile.variation.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/variation' cd objects/variation/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=variation UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/variation' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/variation TMPL=variation -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/variation' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/variation/variation__.cpp -o variation__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/variation/VariantPlacement_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/variation/VariantPlacement.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/variation/VariantPlacement.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/variation/variation__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/variation/VariantPlacement_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/variation/VariantPlacement.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/variation/VariantPlacement.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/variation/variation__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/variation/variation___.cpp -o variation___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/variation/VariantPlacement_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/variation/variation___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/variation/VariantPlacement_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/variation/variation___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libvariation.so .libvariation.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libvariation.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC variation__.o variation___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libvariation.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libvariation.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libvariation.so ln -f .variation.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.variation.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/variation' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/variation' cd algo/blast/dbindex/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make[4] (Makefile.xalgoblastdbindex.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/dbindex' cd algo/blast/dbindex/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xalgoblastdbindex UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/dbindex' /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/fasta.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/fasta.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/dbindex/sequence_istream_bdb.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/dbindex/sequence_istream_bdb.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/dbindex.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/dbindex.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] unsigned long tmp; ^ /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/object_manager.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/dbindex_factory.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/dbindex_factory.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/util/sequence.hpp:273) [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/dbindex_search.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/dbindex/sequence_istream.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/dbindex/dbindex.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/dbindex_search.cpp:47: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgoblastdbindex.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lblast -lseqdb -lxobjread -lxobjutil -lxobjmgr -lseqset -lseq -lxser -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libxalgoblastdbindex.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libxalgoblastdbindex.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libxalgoblastdbindex.so ln -f .xalgoblastdbindex.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.xalgoblastdbindex.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/dbindex' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/dbindex' cd algo/dustmask/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/dustmask' /usr/bin/make[4] (Makefile.xalgodustmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/dustmask' cd algo/dustmask/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xalgodustmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/dustmask' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/dustmask TMPL=xalgodustmask -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/dustmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/dustmask/symdust.cpp -o symdust.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/tempstr.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/dustmask/symdust.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/dustmask/symdust.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:1817:34: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_DefaultRequestCtx; // Default request context ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2270:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_Username; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2271:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_AppName; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2272:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] mutable auto_ptr m_DefaultSessionId; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2287:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_ErrLogRC; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2288:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_TraceLogRC; ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/dustmask/symdust.hpp:45:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/dustmask/symdust.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/dustmask/symdust.hpp:48, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/dustmask/symdust.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_map.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/tse_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/dustmask/symdust.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/dustmask/symdust.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp: At global scope: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:573:32: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_Args; ///< Parsed cmd.-line args ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_map.hpp:40:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/tse_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/dustmask/symdust.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/dustmask/symdust.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_set.hpp: In member function 'void ncbi::NStaticArray::CPairConverter::Convert(void*, const void*) const': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_set.hpp:402:14: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] (MakeConverter(static_cast(0), ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_set.hpp:405:14: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] (MakeConverter(static_cast(0), ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/dustmask/symdust.cpp: In member function 'std::auto_ptr > > ncbi::CSymDustMasker::operator()(const sequence_type&, ncbi::CSymDustMasker::size_type, ncbi::CSymDustMasker::size_type)': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/dustmask/symdust.cpp:218:35: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] std::auto_ptr< TMaskList > res( new TMaskList ); ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/dustmask/symdust.cpp: At global scope: /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/dustmask/symdust.cpp:289:55: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] CSymDustMasker::operator()( const sequence_type & seq ) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/dustmask/symdust.cpp: In member function 'void ncbi::CSymDustMasker::GetMaskedLocs(ncbi::objects::CSeq_id&, const sequence_type&, std::vector >&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/dustmask/symdust.cpp:299:32: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] std::auto_ptr< TMaskList > res = (*this)( seq ); ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/dustmask/symdust.cpp:298:59: warning: typedef 'locs_type' locally defined but not used [-Wunused-local-typedefs] typedef std::vector< CConstRef< objects::CSeq_loc > > locs_type; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/dustmask/symdust.cpp: In member function 'ncbi::CRef ncbi::CSymDustMasker::GetMaskedInts(ncbi::objects::CSeq_id&, const sequence_type&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/dustmask/symdust.cpp:313:32: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] std::auto_ptr< TMaskList > res = (*this)( seq ); ^ /bin/rm -f libxalgodustmask.so .libxalgodustmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgodustmask.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC symdust.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxobjmgr -lseq -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libxalgodustmask.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libxalgodustmask.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libxalgodustmask.so ln -f .xalgodustmask.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.xalgodustmask.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/dustmask' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/dustmask' cd algo/winmask/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/winmask' /usr/bin/make[4] (Makefile.xalgowinmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/winmask' cd algo/winmask/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xalgowinmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/winmask' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask TMPL=xalgowinmask -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/winmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/tempstr.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:1817:34: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_DefaultRequestCtx; // Default request context ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2270:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_Username; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2271:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_AppName; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2272:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] mutable auto_ptr m_DefaultSessionId; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2287:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_ErrLogRC; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2288:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_TraceLogRC; ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_map.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/tse_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp: At global scope: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:573:32: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_Args; ///< Parsed cmd.-line args ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_map.hpp:40:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/tse_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_set.hpp: In member function 'void ncbi::NStaticArray::CPairConverter::Convert(void*, const void*) const': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_set.hpp:402:14: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] (MakeConverter(static_cast(0), ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_set.hpp:405:14: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] (MakeConverter(static_cast(0), ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_istat.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_score.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_istat.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_score.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_score_min.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_score_min.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_util.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_util.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_window.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_window.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_util.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_window_pattern.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_util.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_ostat_factory.hpp:39:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_ostat_factory.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_ostat.hpp:39:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_ostat.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:39:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_istat.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_uset_simple.hpp:39:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_uset_simple.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_istat_factory.hpp:39:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_istat_factory.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_istat.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_ostat.hpp:39:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_ostat_bin.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_ostat_bin.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_uset_array.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_uset_array.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_istat_bin.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_istat.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_ostat_opt.cpp:38:0: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_ostat.hpp:39:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_ostat_opt_ascii.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_uset_hash.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_uset_hash.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_istat.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_istat_oascii.cpp: In constructor 'ncbi::CSeqMaskerIstatOAscii::CSeqMaskerIstatOAscii(const string&, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4)': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:111:49: warning: 'unit_size' may be used uninitialized in this function [-Wmaybe-uninitialized] if( k == 0U || k > (Uint4)(2*unit_size - 1) ) ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_ostat.hpp:39:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_ostat_opt_bin.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_istat.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_cache_boost.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_istat.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_cache_boost.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_util.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/win_mask_counts_converter.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/seq_masker_istat.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/win_mask_counts_converter.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/win_mask_counts_converter.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/win_mask_dup_table.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/win_mask_dup_table.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/util/sequence.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/win_mask_util.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/util/sequence.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/win_mask_util.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/win_mask_util.cpp: In member function 'virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/util/sequence.hpp:273) [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/win_mask_config.hpp:41:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/win_mask_config.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/winmask/win_mask_config.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/winmask/win_mask_config.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libxalgowinmask.so .libxalgowinmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgowinmask.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lseqmasks_io -lxobjread -lxobjutil -lxobjmgr -lseq -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libxalgowinmask.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libxalgowinmask.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libxalgowinmask.so ln -f .xalgowinmask.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.xalgowinmask.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/winmask' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/winmask' cd objects/blast/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blast' cd /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast && /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/new_module.sh blast all Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/scoremat/scoremat.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset/seqset.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast' /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xnetblastcli.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blast' cd objects/blast/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast TMPL=blast -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast/blast__.cpp -o blast__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Bla_com_opt_db_res_by_orga_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Bla_com_opt_db_res_by_orga.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast/Bla_com_opt_db_res_by_orga.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast/blast__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Bla_com_opt_db_res_by_orga_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Bla_com_opt_db_res_by_orga.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast/Bla_com_opt_db_res_by_orga.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast/blast__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast/blast___.cpp -o blast___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast/Bla_com_opt_db_res_by_orga_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast/blast___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast/Bla_com_opt_db_res_by_orga_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast/blast___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast/names.cpp -o names.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/NCBI_Blast4_module.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/names.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast/names.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/NCBI_Blast4_module.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/names.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast/names.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libxnetblast.so .libxnetblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxnetblast.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blast__.o blast___.o names.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lscoremat -lseqset -lseq -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libxnetblast.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libxnetblast.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libxnetblast.so ln -f .xnetblast.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.xnetblast.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blast' cd objects/blast/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xnetblastcli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast TMPL=xnetblastcli -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast/blastclient.cpp -o blastclient.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/blastclient_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/blastclient.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast/blastclient.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/blastclient_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/blastclient.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast/blastclient.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast/blastclient_.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blast/blastclient_.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libxnetblastcli.so .libxnetblastcli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxnetblastcli.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blastclient.o blastclient_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxnetblast -lxser -lxconnect -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libxnetblastcli.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libxnetblastcli.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libxnetblastcli.so ln -f .xnetblastcli.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.xnetblastcli.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blast' cd algo/blast/api/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/api' /usr/bin/make[4] (Makefile.xblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/api' cd algo/blast/api/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xblast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/api' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api TMPL=xblast -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_aux.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_aux.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_options_cxx.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_options_cxx.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_options_local_priv.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_options_local_priv.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_options_local_priv.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_options_local_priv.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/remote_blast.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_options_builder.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/remote_blast.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_options_builder.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/util_misc.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_setup_cxx.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_setup_cxx.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_seqalign.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_seqalign.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_seqalign.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_seqalign.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_options_handle.cpp:98:36: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:165) [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_options_handle.cpp:104:37: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_nucl_options.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_nucl_options.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/disc_nucl_options.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/disc_nucl_options.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/disc_nucl_options.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/disc_nucl_options.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_prot_options.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_prot_options.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/psiblast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast_options.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/psiblast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast_options.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_rps_options.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_rps_options.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blastx_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blastx_options.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blastx_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blastx_options.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/tblastx_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/tblastx_options.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/tblastx_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/tblastx_options.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/tblastn_options.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/tblastn_options.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/tblastn_options.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/tblastn_options.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/rpstblastn_options.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/rpstblastn_options.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/rpstblastn_options.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/rpstblastn_options.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/pssm_engine.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/pssm_engine.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/local_blast.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/local_blast.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/local_blast.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/local_blast.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/remote_blast.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/remote_blast.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/util/sequence.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/util/sequence.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_seqinfosrc.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/bl2seq.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/bl2seq.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_objmgr_tools.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_objmgr_tools.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/repeats_filter_cxx.cpp:44: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/repeats_filter_cxx.cpp:44: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_mtlock.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/psibl2seq.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psibl2seq.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/psibl2seq.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psibl2seq.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/local_db_adapter.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/local_db_adapter.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/local_db_adapter.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/local_db_adapter.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/psiblast.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/psiblast.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast_impl.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast_impl.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast_impl.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast_impl.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast_impl.cpp: In member function 'void ncbi::blast::CPsiBlastImpl::x_ExtractQueryFromPssm()': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast_impl.cpp:122:23: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] m_Query.Reset(new CObjMgrFree_QueryFactory(query_bioseq)); /* NCBI_FAKE_WARNING */ ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast_iteration.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast_iteration.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/psi_pssm_input.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psi_pssm_input.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/psi_pssm_input.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psi_pssm_input.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/msa_pssm_input.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/msa_pssm_input.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/msa_pssm_input.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/msa_pssm_input.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast_aux_priv.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast_aux_priv.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast_aux_priv.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast_aux_priv.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast_aux_priv.cpp: In function 'void ncbi::blast::PsiBlastComputePssmScores(ncbi::CRef, const ncbi::blast::CBlastOptions&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/psiblast_aux_priv.cpp:474:41: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] CRef seq_fetcher(new CObjMgrFree_QueryFactory(query)); /* NCBI_FAKE_WARNING */ ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_aux_priv.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_aux_priv.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_aux_priv.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_aux_priv.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_advprot_options.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_advprot_options.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/version.cpp -o version.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/version.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/version.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/version.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/dust_filter.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/dust_filter.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/dust_filter.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/dust_filter.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/rps_aux.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/rps_aux.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/search_strategy.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/search_strategy.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/setup_factory.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/setup_factory.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/prelim_stage.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/prelim_stage.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/traceback_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/traceback_stage.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/traceback_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/traceback_stage.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/uniform_search.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/uniform_search.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/local_search.cpp -o local_search.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/scoremat/Pssm_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/scoremat/Pssm.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/local_search.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/scoremat/Pssm_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/scoremat/Pssm.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/local_search.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/local_search.cpp: In member function 'virtual ncbi::CRef ncbi::blast::CLocalPssmSearch::Run()': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/local_search.cpp:171:43: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(query)); /* NCBI_FAKE_WARNING */ ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_results.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_results.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_results.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_results.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_diag.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/seqalign__.hpp:1, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/remote_search.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_diag.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/seqalign__.hpp:1, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/remote_search.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/query_data.cpp -o query_data.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/query_data.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/query_data.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/objmgr_query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/objmgr_query_data.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/objmgr_query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/objmgr_query_data.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/objmgrfree_query_data.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/objmgrfree_query_data.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/effsearchspace_calc.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_dbindex.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/blast_dbindex.cpp:43: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/split_query.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/split_query_cxx.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/split_query.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/split_query_cxx.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/effsearchspace_calc.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/split_query_aux_priv.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/split_query_aux_priv.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/split_query_blk.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/split_query_blk.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/split_query.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/split_query_aux_priv.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/split_query_blk.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/sseqloc.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/winmask_filter.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/winmask_filter.cpp:43: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/winmask_filter.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/winmask_filter.cpp:43: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/subj_ranges_set.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/subj_ranges_set.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/subj_ranges_set.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/subj_ranges_set.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/rpsblast_local.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/local_blast.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/rpsblast_local.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/seedtop.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seedtop.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/seedtop.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seedtop.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seedtop.cpp: In member function 'void ncbi::blast::CSeedTop::x_ParsePattern()': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/seedtop.cpp:73:48: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i=0; i<(*unit).length(); ++i) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/cdd_pssm_input.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/cdd_pssm_input.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/cdd_pssm_input.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/cdd_pssm_input.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/psiblast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/deltablast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/deltablast_options.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/psiblast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/deltablast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/deltablast_options.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/psiblast.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/deltablast.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/psiblast.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/api/deltablast.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libxblast.so .libxblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxblast.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxalgoblastdbindex -lcomposition_adjustment -lxalgowinmask -lxalgodustmask -lseqmasks_io -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lblastdb -lxnetblastcli -lxnetblast -lscoremat -lxconnect -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lblast -lseqdb -lseqset -lseq -lgeneral -lxser -lxconnect -lsequtil -ltables -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libxblast.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libxblast.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libxblast.so ln -f .xblast.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.xblast.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/api' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/api' cd objtools/blast/services/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/services' /usr/bin/make[4] (Makefile.blast_services.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/services' cd objtools/blast/services/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blast_services UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/services' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/services TMPL=blast_services -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/services' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=NETBLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/services/blast_services.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/services/blast_services.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libblast_services.so .libblast_services.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblast_services.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blast_services.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxnetblastcli -lxnetblast -lxser -lxconnect -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libblast_services.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libblast_services.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libblast_services.so ln -f .blast_services.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.blast_services.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/services' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/services' cd objtools/blast/gene_info_reader/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make[4] (Makefile.gene_info.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader' cd objtools/blast/gene_info_reader/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=gene_info UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/gene_info_reader/gene_info.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbienv.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/env_reg.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/gene_info_reader/file_utils.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /bin/rm -f libgene_info.so .libgene_info.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgene_info.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC gene_info.o gene_info_reader.o file_utils.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libgene_info.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libgene_info.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libgene_info.so ln -f .gene_info.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.gene_info.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader' cd objects/id1/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/id1' cd /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id1 && /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/new_module.sh id1 all Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset/seqset.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id1' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id1' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id1' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id1' /usr/bin/make[4] (Makefile.id1.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.id1cli.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/id1' cd objects/id1/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=id1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/id1' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id1 TMPL=id1 -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/id1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id1/id1__.cpp -o id1__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/id1/Entry_complexities_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/id1/Entry_complexities.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id1/Entry_complexities.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id1/id1__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/id1/Entry_complexities_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/id1/Entry_complexities.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id1/Entry_complexities.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id1/id1__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id1/id1___.cpp -o id1___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id1/Entry_complexities_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id1/id1___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id1/Entry_complexities_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id1/id1___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libid1.so .libid1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid1.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC id1__.o id1___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libid1.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libid1.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libid1.so ln -f .id1.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.id1.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/id1' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/id1' cd objects/seqsplit/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqsplit' cd /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqsplit && /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/new_module.sh seqsplit all Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqset/seqset.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seq/seq.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqalign/seqalign.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqsplit' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqsplit' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqsplit' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqsplit' /usr/bin/make[4] (Makefile.seqsplit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqsplit' cd objects/seqsplit/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqsplit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqsplit' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqsplit TMPL=seqsplit -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqsplit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqsplit/ID2S_Bioseq_Ids_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqsplit/ID2S_Bioseq_Ids.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqsplit/ID2S_Bioseq_Ids.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqsplit/seqsplit__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqsplit/ID2S_Bioseq_Ids_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqsplit/ID2S_Bioseq_Ids.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqsplit/ID2S_Bioseq_Ids.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqsplit/seqsplit__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqsplit/seqsplit___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqsplit/seqsplit___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqsplit/seqsplit___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqsplit/ID2S_Chunk_Id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CID2S_Chunk_Id_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqsplit/ID2S_Chunk_Id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("ID2S-Chunk-Id", CID2S_Chunk_Id, STD, (int)) ^ /bin/rm -f libseqsplit.so .libseqsplit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqsplit.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seqsplit__.o seqsplit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libseqsplit.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libseqsplit.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libseqsplit.so ln -f .seqsplit.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.seqsplit.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqsplit' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqsplit' cd objects/id2/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/id2' cd /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id2 && /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/new_module.sh id2 all Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqsplit/seqsplit.asn /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id2' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id2' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id2' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id2' /usr/bin/make[4] (Makefile.id2.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.id2cli.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/id2' cd objects/id2/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=id2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/id2' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id2 TMPL=id2 -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/id2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id2/id2__.cpp -o id2__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/id2/ID2S_Reply_Get_Chunk_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/id2/ID2S_Reply_Get_Chunk.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id2/ID2S_Reply_Get_Chunk.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id2/id2__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/id2/ID2S_Reply_Get_Chunk_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/id2/ID2S_Reply_Get_Chunk.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id2/ID2S_Reply_Get_Chunk.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id2/id2__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id2/id2___.cpp -o id2___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id2/id2___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/id2/id2___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libid2.so .libid2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid2.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC id2__.o id2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lseqsplit -lseq -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libid2.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libid2.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libid2.so ln -f .id2.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.id2.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/id2' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/id2' cd util/compress/api/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/compress/api' /usr/bin/make[4] (Makefile.compress.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/compress/api' cd util/compress/api/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=compress UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/compress/api' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api TMPL=compress -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/compress/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/compress.cpp -o compress.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/compress/compress.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/compress.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/stream.cpp -o stream.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/compress/compress.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/compress/stream.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/streambuf.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/stream.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/streambuf.cpp -o streambuf.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/compress/compress.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/compress/stream.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/streambuf.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/streambuf.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/stream_util.cpp -o stream_util.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/compress/compress.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/compress/stream.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/compress/stream_util.hpp:49, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/stream_util.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/bzip2.cpp -o bzip2.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/compress/compress.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/compress/stream.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/compress/bzip2.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/bzip2.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/zlib.cpp -o zlib.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/zlib.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/lzo.cpp -o lzo.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/lzo.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/compress/reader_zlib.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/reader_zlib.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/tar.cpp -o tar.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/tar.cpp:52: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/archive.cpp -o archive.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/archive.cpp:34:0: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/archive_.cpp -o archive_.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/compress/archive_.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/archive_.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/compress/compress.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/compress/stream.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/compress/zlib.hpp:54, from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/archive_zip.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/archive_zip.cpp:45:0: /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/miniz/miniz.c: At global scope: /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/miniz/miniz.c:3325:27: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE int mz_zip_reader_filename_compare(const mz_zip_array *pCentral_dir_array, const mz_zip_array *pCentral_dir_offsets, mz_uint l_index, const char *pR, mz_uint r_len) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/miniz/miniz.c:3314:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_reader_string_equal(const char *pA, const char *pB, mz_uint len, mz_uint flags) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/miniz/miniz.c:3225:39: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE const mz_uint8 *mz_zip_reader_get_cdh(mz_zip_archive *pZip, mz_uint file_index) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/miniz/miniz.c:2991:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_reader_filename_less(const mz_zip_array *pCentral_dir_array, const mz_zip_array *pCentral_dir_offsets, mz_uint l_index, mz_uint r_index) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/miniz/miniz.c:2918:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_array_push_back(mz_zip_archive *pZip, mz_zip_array *pArray, const void *pElements, size_t n) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/miniz/miniz.c:2913:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_array_ensure_room(mz_zip_archive *pZip, mz_zip_array *pArray, size_t n) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/miniz/miniz.c:2906:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_array_resize(mz_zip_archive *pZip, mz_zip_array *pArray, size_t new_size, mz_uint growing) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/miniz/miniz.c:2900:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_array_reserve(mz_zip_archive *pZip, mz_zip_array *pArray, size_t new_capacity, mz_uint growing) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/miniz/miniz.c:2885:28: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE void mz_zip_array_clear(mz_zip_archive *pZip, mz_zip_array *pArray) ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/archive_zip.cpp:45:0: /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/miniz/miniz.c:2431:28: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE void tdefl_record_match(tdefl_compressor *d, mz_uint match_len, mz_uint match_dist) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/miniz/miniz.c:2423:28: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE void tdefl_record_literal(tdefl_compressor *d, mz_uint8 lit) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/api/miniz/miniz.c:2255:28: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE void tdefl_find_match(tdefl_compressor *d, mz_uint lookahead_pos, mz_uint max_dist, mz_uint max_match_len, mz_uint *pMatch_dist, mz_uint *pMatch_len) ^ /bin/rm -f libxcompress.so .libxcompress.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcompress.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxutil -lxncbi -lbz2 -lz -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libxcompress.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libxcompress.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libxcompress.so ln -f .xcompress.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.xcompress.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/compress/api' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/compress/api' cd objtools/data_loaders/genbank/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make[4] (Makefile.ncbi_xreader.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.ncbi_xloader_genbank.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/data_loaders/genbank/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xreader UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/dispatcher.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/dispatcher.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/reader.hpp:32, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/reader.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/reader.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/writer.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/writer.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/writer.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/writer.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/processors.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/processors.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/seqref.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/seqref.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/blob_id.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/seqref.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/seqref.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/blob_id.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/blob_id.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/blob_id.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/blob_id.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/split_parser.cpp -o split_parser.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/split_parser.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/split_parser.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bio_object_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/impl/tse_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/split_parser.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/request_result.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/reader_id1_base.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/reader_id2_base.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/reader_service.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/reader_id2_base.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/reader_service.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/incr_time.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/incr_time.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o split_parser.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader.a /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libncbi_xreader.a /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libncbi_xreader.a ln -f .ncbi_xreader-static.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.ncbi_xreader-static.dep /bin/rm -f libncbi_xreader.so .libncbi_xreader.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o split_parser.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxobjmgr -lid2 -lseqsplit -lid1 -lseqset -lseq -lgeneral -lxser -lxconnect -lxcompress -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libncbi_xreader.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libncbi_xreader.so ln -f .ncbi_xreader.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.ncbi_xreader.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/make[4] (Makefile.ncbi_xreader_cache.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/cache' cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xreader_cache UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/reader.hpp:32, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/writer.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader_cache.a /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libncbi_xreader_cache.a /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libncbi_xreader_cache.a ln -f .ncbi_xreader_cache-static.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.ncbi_xreader_cache-static.dep /bin/rm -f libncbi_xreader_cache.so .libncbi_xreader_cache.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_cache.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC reader_cache.o writer_cache.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lncbi_xreader -lxobjmgr -lseq -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader_cache.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libncbi_xreader_cache.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libncbi_xreader_cache.so ln -f .ncbi_xreader_cache.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.ncbi_xreader_cache.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/cache' cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/make[4] (Makefile.ncbi_xreader_id1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/id1' cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/reader_id1_base.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/id1/reader_id1.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp ar cr libncbi_xreader_id1.a reader_id1.o /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader_id1.a /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libncbi_xreader_id1.a /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libncbi_xreader_id1.a ln -f .ncbi_xreader_id1-static.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.ncbi_xreader_id1-static.dep /bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id1.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC reader_id1.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lncbi_xreader -lxobjmgr -lid1 -lseq -lgeneral -lxser -lxconnect -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader_id1.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libncbi_xreader_id1.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libncbi_xreader_id1.so ln -f .ncbi_xreader_id1.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.ncbi_xreader_id1.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/id1' cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make[4] (Makefile.ncbi_xreader_id2.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/id2' cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/reader_id2_base.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp ar cr libncbi_xreader_id2.a reader_id2.o /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader_id2.a /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libncbi_xreader_id2.a /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libncbi_xreader_id2.a ln -f .ncbi_xreader_id2-static.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.ncbi_xreader_id2-static.dep /bin/rm -f libncbi_xreader_id2.so .libncbi_xreader_id2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id2.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC reader_id2.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lncbi_xreader -lxobjmgr -lid2 -lseqsplit -lseq -lxser -lxconnect -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader_id2.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libncbi_xreader_id2.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libncbi_xreader_id2.so ln -f .ncbi_xreader_id2.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.ncbi_xreader_id2.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/id2' cd objtools/data_loaders/genbank/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/gbloader.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/gbloader.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/gbloader.cpp: In member function 'virtual ncbi::objects::CDataLoader::TTSE_Lock ncbi::objects::CGBDataLoader::ResolveConflict(const ncbi::objects::CSeq_id_Handle&, const TTSE_LockSet&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/gbloader.cpp:850:18: warning: variable 'conflict' set but not used [-Wunused-but-set-variable] bool conflict=false; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/gbload_util.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbload_util.o /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xloader_genbank.a /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libncbi_xloader_genbank.a /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libncbi_xloader_genbank.a ln -f .ncbi_xloader_genbank-static.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.ncbi_xloader_genbank-static.dep /bin/rm -f libncbi_xloader_genbank.so .libncbi_xloader_genbank.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_genbank.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC gbloader.o gbload_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lncbi_xreader_id2 -lncbi_xreader_id1 -lncbi_xreader_cache -lncbi_xreader -lxobjmgr -lseq -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xloader_genbank.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libncbi_xloader_genbank.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libncbi_xloader_genbank.so ln -f .ncbi_xloader_genbank.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.ncbi_xloader_genbank.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/alnmgr/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/alnmgr' /usr/bin/make[4] (Makefile.alnmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/alnmgr' cd objtools/alnmgr/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=alnmgr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/alnmgr' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr TMPL=alnmgr -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/alnmgr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_builders.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_builders.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_inst.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_builders.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_builders.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_tests.hpp:41:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_stats.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_builders.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_builders.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/seqids_extractor.hpp: In member function 'void ncbi::CAlnSeqIdsExtract::operator()(const ncbi::objects::CSeq_align&, ncbi::CAlnSeqIdsExtract::TIdVec&) const': /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/seqids_extractor.hpp:117:34: warning: typedef 'TDim' locally defined but not used [-Wunused-local-typedefs] typedef CSeq_align::TDim TDim; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_builders.cpp: In function 'void ncbi::BuildAln(ncbi::TAnchoredAlnVec&, ncbi::CAnchoredAln&, const ncbi::CAlnUserOptions&, ncbi::TAlnSeqIdIRef)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_builders.cpp:551:46: warning: typedef 'TPairwiseAlnVector' locally defined but not used [-Wunused-local-typedefs] typedef CAnchoredAln::TPairwiseAlnVector TPairwiseAlnVector; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_converters.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_converters.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_tests.hpp:41:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_stats.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_converters.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_converters.cpp:51: /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/seqids_extractor.hpp: In member function 'void ncbi::CAlnSeqIdsExtract::operator()(const ncbi::objects::CSeq_align&, ncbi::CAlnSeqIdsExtract::TIdVec&) const': /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/seqids_extractor.hpp:117:34: warning: typedef 'TDim' locally defined but not used [-Wunused-local-typedefs] typedef CSeq_align::TDim TDim; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_generators.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_generators.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_tests.hpp:41:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_stats.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_serial.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_generators.cpp:55: /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/seqids_extractor.hpp: In member function 'void ncbi::CAlnSeqIdsExtract::operator()(const ncbi::objects::CSeq_align&, ncbi::CAlnSeqIdsExtract::TIdVec&) const': /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/seqids_extractor.hpp:117:34: warning: typedef 'TDim' locally defined but not used [-Wunused-local-typedefs] typedef CSeq_align::TDim TDim; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_generators.cpp: In function 'void ncbi::InitSplicedsegFromPairwiseAln(ncbi::objects::CSpliced_seg&, const ncbi::CPairwiseAln&, ncbi::objects::CScope*)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_generators.cpp:538:44: warning: typedef 'TAlnRngColl' locally defined but not used [-Wunused-local-typedefs] typedef CAlignRangeCollection TAlnRngColl; ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:71:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_generators.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmblocks.h: In instantiation of 'bm::blocks_manager::blocks_manager(const gap_word_t*, bm::id_t, const Alloc&) [with Alloc = bm::mem_alloc; bm::gap_word_t = short unsigned int; bm::id_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:848:20: required from 'bm::bvector::bvector(bm::strategy, const gap_word_t*, bm::bvector::size_type, const Alloc&) [with Alloc = bm::mem_alloc; bm::gap_word_t = short unsigned int; bm::bvector::size_type = unsigned int]' /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_stats.hpp:325:44: required from 'size_t ncbi::CAlnStats<_TAlnIdVec>::x_AddId(const TAlnSeqIdIRef&, size_t, size_t) [with _TAlnIdVec = ncbi::CAlnIdMap, ncbi::CAlnSeqIdsExtract > >; size_t = long unsigned int; ncbi::TAlnSeqIdIRef = ncbi::CIRef]' /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_stats.hpp:118:66: required from 'ncbi::CAlnStats<_TAlnIdVec>::CAlnStats(const TAlnIdVec&) [with _TAlnIdVec = ncbi::CAlnIdMap, ncbi::CAlnSeqIdsExtract > >; ncbi::CAlnStats<_TAlnIdVec>::TAlnIdVec = ncbi::CAlnIdMap, ncbi::CAlnSeqIdsExtract > >]' /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_generators.cpp:1173:40: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmblocks.h:649:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] char c = *vp; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_seqid.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_seqid.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_inst.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_seqid.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/pairwise_aln.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_serial.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_serial.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_inst.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_serial.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_serial.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_tests.hpp:41:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_stats.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_serial.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/aln_serial.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/seqids_extractor.hpp: In member function 'void ncbi::CAlnSeqIdsExtract::operator()(const ncbi::objects::CSeq_align&, ncbi::CAlnSeqIdsExtract::TIdVec&) const': /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/seqids_extractor.hpp:117:34: warning: typedef 'TDim' locally defined but not used [-Wunused-local-typedefs] typedef CSeq_align::TDim TDim; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/align_range.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alndiag.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alndiag.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmap.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmap.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmap.cpp:1473:56: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (TNumrow row = 0; row < selected_rows.size(); row++) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmapprint.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmapprint.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnseq.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmatch.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnseq.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmatch.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] match1->m_ChainScore == match2->m_ChainScore && ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmatch.cpp: In member function 'void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (aln_seq1->m_StrandScore > 0 && ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aln_seq2->m_StrandScore > 0 && ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aln_seq2->m_StrandScore < 0 && ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnmerger.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnmerger.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmerger.cpp:140:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_CreateDenseg()': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmerger.cpp:1223:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmerger.cpp:151:17: warning: 'width2' may be used uninitialized in this function [-Wmaybe-uninitialized] int width1, width2; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnmix.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmix.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnmix.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmix.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnmix.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnsegments.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnsegments.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnseq.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnsegments.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnsegments.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnsegments.cpp:35:0: /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnsegments.cpp:308:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (plus && prev_start_plus_len < start || ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::x_ConsolidateGaps(ncbi::objects::CAlnMixSegments::TSegmentsContainer&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnsegments.cpp:406:33: warning: 'score1' may be used uninitialized in this function [-Wmaybe-uninitialized] if (score2 < 75 * score1 / 100) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnseq.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnseq.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnseq.cpp:37:0: /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnseq.cpp: In static member function 'static bool ncbi::objects::CAlnMixSequences::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnseq.cpp:84:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_ChainScore == seq2->m_ChainScore && ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnvec.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnvec.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnvec.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnvec.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnvec_iterator.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnvec.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnvecprint.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/alnvec.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnvecprint.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/pairwise_aln.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/pairwise_aln.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_inst.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/pairwise_aln.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/sparse_aln.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/sparse_aln.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/sparse_aln.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/sparse_ci.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/sparse_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/sparse_aln.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/sparse_ci.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/sparse_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alntext.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/Date_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/Date.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/general/general__.hpp:1, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/alntext.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/score_builder_base.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/score_builder_base.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/score_builder_base.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/score_builder_base.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_tests.hpp:41:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_stats.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/aln_converters.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/alnmgr/score_builder_base.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/seqids_extractor.hpp: In member function 'void ncbi::CAlnSeqIdsExtract::operator()(const ncbi::objects::CSeq_align&, ncbi::CAlnSeqIdsExtract::TIdVec&) const': /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/alnmgr/seqids_extractor.hpp:117:34: warning: typedef 'TDim' locally defined but not used [-Wunused-local-typedefs] typedef CSeq_align::TDim TDim; ^ /bin/rm -f libxalnmgr.so .libxalnmgr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalnmgr.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxobjmgr -lseqset -lseq -lxser -ltables -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libxalnmgr.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libxalnmgr.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libxalnmgr.so ln -f .xalnmgr.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.xalnmgr.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/alnmgr' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/alnmgr' cd cgi/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/cgi' /usr/bin/make[4] (Makefile.cgi.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.fcgi.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/cgi' cd cgi/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=cgi UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/cgi' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/cgi TMPL=cgi -w all /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_cgi to make__cgi_common per /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/.#lock-map. make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/cgi' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbienv.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/ncbicgi.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/ncbicgi.cpp: In member function 'void ncbi::CCgiRequest::GetCGIEntries(ncbi::CEntryCollector_Base&) const': /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/ncbicgi.cpp:1558:43: warning: typedef 'TExtraArg' locally defined but not used [-Wunused-local-typedefs] typedef CDiagContext_Extra::TExtraArg TExtraArg; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/cgiapp.cpp -o cgiapp.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbienv.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/cgiapp.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/cgictx.cpp -o cgictx.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/cgictx.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/request_ctx.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/ncbicgir.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/ncbires.cpp -o ncbires.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/ncbires.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/ref_args.cpp -o ref_args.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/cgi/ref_args.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/ref_args.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/cgi_run.cpp -o cgi_run.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/include/cgi/cgiapp.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/cgi_run.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/cgi_util.cpp -o cgi_util.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/ncbi_url.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/cgi/cgi_util.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/cgi_util.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbienv.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/cgi_serial.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/cgi_session.cpp -o cgi_session.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/cgi_session.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/cgi/cgi_exception.hpp:39:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/cgi_exception.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/plugin_manager.hpp:70, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/plugin_manager_store.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/cgiapp_cached.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/stream_utils.hpp:45:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/cgi/ncbicgi.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/cgi/impl/cgi_entry_reader.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/cgi_entry_reader.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/user_agent.cpp -o user_agent.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/version.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/cgi/user_agent.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/cgi/user_agent.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /bin/rm -f libxcgi.so .libxcgi.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcgi.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libxcgi.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libxcgi.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libxcgi.so ln -f .xcgi.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.xcgi.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/cgi' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/cgi' cd html/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/html' /usr/bin/make[4] (Makefile.html.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/html' cd html/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=html UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/html' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/html TMPL=html -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/html' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/html/node.cpp -o node.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiutil.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/html/node.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/html/html.cpp -o html.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/html/html.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/html/html.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/html/htmlhelper.cpp -o htmlhelper.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/html/html.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/html/htmlhelper.cpp:32: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/html/page.cpp -o page.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiutil.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/html/page.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/html/pager.cpp -o pager.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/html/pager.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/html/selection.cpp -o selection.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/stream_utils.hpp:45:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/cgi/ncbicgi.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/html/selection.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/html/components.cpp -o components.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/html/html.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/html/components.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/html/components.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/html/commentdiag.cpp -o commentdiag.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/html/commentdiag.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/html/commentdiag.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/html/indentstream.cpp -o indentstream.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/html/indentstream.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/html/indentstream.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/html/html_exception.cpp -o html_exception.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/html/node.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/html/html_exception.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/html/htmlhelper.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/html/writer_htmlenc.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /bin/rm -f libxhtml.so .libxhtml.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxhtml.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libxhtml.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libxhtml.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libxhtml.so ln -f .xhtml.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.xhtml.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/html' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/html' cd objtools/align_format/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/align_format' /usr/bin/make[4] (Makefile.align_format.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/align_format' cd objtools/align_format/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=align_format UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/align_format' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format TMPL=align_format -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/align_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/align_format/format_flags.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/format_flags.cpp:30: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/align_format/align_format_util.hpp:32, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/align_format_util.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/align_format/align_format_util.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/align_format_util.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/align_format_util.cpp: In static member function 'static std::map, ncbi::CRef > ncbi::align_format::CAlignFormatUtil::HspListToHitMap(std::vector >, const ncbi::objects::CSeq_align_set&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/align_format_util.cpp:1486:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(count >= seqIdList.size()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiutil.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/showdefline.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/showdefline.cpp:44: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/showalign.cpp -o showalign.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbireg.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/align_format/showalign.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/showalign.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/align_format/showalign.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/showalign.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/showalign.cpp: In function 'void ncbi::align_format::s_MakeDomainString(int, int, const string&, std::string&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/showalign.cpp:4399:74: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/showalign.cpp:4399:100: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/tabular.cpp -o tabular.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/tabular.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/tabular.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/html/html.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/align_format/vectorscreen.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/vectorscreen.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/align_format/vectorscreen.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/vectorscreen.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/align_format/seqalignfilter.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/seqalignfilter.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/align_format/seqalignfilter.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/seqalignfilter.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/aln_printer.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/aln_printer.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libalign_format.so .libalign_format.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libalign_format.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o aln_printer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxalnmgr -lncbi_xloader_genbank -lseqdb -lblast_services -lxobjread -lxobjutil -lxobjmgr -lxnetblast -lblastdb -lgene_info -lseqset -lseq -lgeneral -lxser -lxcgi -lxhtml -ltables -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libalign_format.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libalign_format.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libalign_format.so ln -f .align_format.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.align_format.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/align_format' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/align_format' cd objtools/blast/blastdb_format/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make[4] (Makefile.blastdb_format.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/blastdb_format' cd objtools/blast/blastdb_format/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blastdb_format UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libblastdb_format.so .libblastdb_format.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastdb_format.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seq_writer.o blastdb_dataextract.o blastdb_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lseqdb -lxobjutil -lxobjmgr -lseq -lxser -lsequtil -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libblastdb_format.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libblastdb_format.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libblastdb_format.so ln -f .blastdb_format.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.blastdb_format.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/blastdb_format' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/blastdb_format' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb_rmt.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/blastdb' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libncbi_xloader_blastdb.so .libncbi_xloader_blastdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_blastdb.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC bdbloader.o cached_sequence.o local_blastdb_adapter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lseqdb -lxobjmgr -lseqset -lseq -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xloader_blastdb.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libncbi_xloader_blastdb.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libncbi_xloader_blastdb.so ln -f .ncbi_xloader_blastdb.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.ncbi_xloader_blastdb.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/blastdb' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_blastdb_rmt.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lncbi_xloader_blastdb -lblast_services -lxobjmgr -lseq -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xloader_blastdb_rmt.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libncbi_xloader_blastdb_rmt.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so ln -f .ncbi_xloader_blastdb_rmt.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/blastdb' cd connect/ext/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/connect/ext' /usr/bin/make[4] (Makefile.connext.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xconnext.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/connect/ext' cd connect/ext/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xconnext UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/connect/ext' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ext TMPL=xconnext -w all /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_xconnext to make__ext_common per /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ext/.#lock-map. make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/connect/ext' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ext/ncbi_ifconf.c -o ncbi_ifconf.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ext/ncbi_crypt.c -o ncbi_crypt.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ext/ncbi_dblb.c -o ncbi_dblb.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ext/ncbi_iprange.c -o ncbi_iprange.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ext/ncbi_localnet.c -o ncbi_localnet.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp -o ncbi_dblb_svcmapper.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/connect/ext/ncbi_dblb_svcmapper.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /bin/rm -f libxconnext.so .libxconnext.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxconnext.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC ncbi_ifconf.o ncbi_crypt.o ncbi_dblb.o ncbi_iprange.o ncbi_localnet.o ncbi_dblb_svcmapper.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxconnect -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libxconnext.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libxconnext.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libxconnext.so ln -f .xconnext.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.xconnext.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/connect/ext' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/connect/ext' cd algo/blast/blastinput/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make[4] (Makefile.blastinput.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/blastinput' cd algo/blast/blastinput/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blastinput UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput TMPL=blastinput -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/blastinput' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blast_input.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blast_input.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/object_manager.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blast_scope_src.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_scope_src.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blast_scope_src.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/version.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/version.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blast_args.cpp:44: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blast_args.cpp:45: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/cmdline_flags.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/cmdline_flags.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/sseqloc.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blast_input_aux.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blast_input_aux.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blastp_args.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blastp_args.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blastn_args.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blastn_args.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/rmblastn_args.cpp:25: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/rmblastn_args.cpp:25: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blastx_args.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/blastx_args.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/tblastn_args.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/tblastn_args.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/tblastx_args.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/tblastx_args.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/psiblast_args.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/psiblast_args.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/rpsblast_args.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/rpsblast_args.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/igblastn_args.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/igblastn_args.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/igblastp_args.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/igblastp_args.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/deltablast_args.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/deltablast_args.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libblastinput.so .libblastinput.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastinput.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxblast -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lseqdb -lxobjread -lxobjread -lvariation -lcreaders -lsubmit -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxutil -lncbi_xloader_genbank -lncbi_xreader_id2 -lncbi_xreader -lscoremat -lseqset -lseq -lxser -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libblastinput.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libblastinput.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libblastinput.so ln -f .blastinput.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.blastinput.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/blastinput' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/blastinput' cd objects/blastxml/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blastxml' cd /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastxml && /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/new_module.sh blastxml all File blastxml.module not found. Using defaults... Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastxml' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastxml' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastxml' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastxml' /usr/bin/make[4] (Makefile.blastxml.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blastxml' cd objects/blastxml/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blastxml UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blastxml' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastxml TMPL=blastxml -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blastxml' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastxml/BlastOutput_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastxml/BlastOutput.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastxml/BlastOutput.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastxml/blastxml__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastxml/BlastOutput_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastxml/BlastOutput.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastxml/BlastOutput.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastxml/blastxml__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastxml/BlastOutput_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastxml/blastxml___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastxml/BlastOutput_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/blastxml/blastxml___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libblastxml.so .libblastxml.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastxml.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blastxml__.o blastxml___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libblastxml.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libblastxml.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libblastxml.so ln -f .blastxml.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.blastxml.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blastxml' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blastxml' cd objects/entrez2/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/entrez2' cd /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2 && /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/new_module.sh entrez2 all Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2' /usr/bin/make[4] (Makefile.entrez2.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.entrez2cli.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/entrez2' cd objects/entrez2/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=entrez2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/entrez2' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2 TMPL=entrez2 -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/entrez2/E2Reply_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/entrez2/E2Reply.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/E2Reply.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/entrez2__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/entrez2/E2Reply_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/entrez2/E2Reply.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/E2Reply.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/entrez2__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/E2Reply_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/entrez2___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/E2Reply_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/entrez2___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/E2Reply_.cpp:39:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/entrez2___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/Entrez2_db_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CEntrez2_db_id_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/Entrez2_db_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Entrez2-db-id", CEntrez2_db_id, STD, (string)) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/Entrez2_dt_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CEntrez2_dt_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/Entrez2_dt_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Entrez2-dt", CEntrez2_dt, STD, (int)) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/Entrez2_field_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CEntrez2_field_id_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/Entrez2_field_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Entrez2-field-id", CEntrez2_field_id, STD, (string)) ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/Entrez2_link_id_.cpp: In static member function 'static const ncbi::CTypeInfo* ncbi::objects::CEntrez2_link_id_Base::GetTypeInfo()': /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:569:31: warning: typedef 'CClass' locally defined but not used [-Wunused-local-typedefs] typedef ClassName CClass; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:577:5: note: in expansion of macro 'BEGIN_ALIAS_INFO_METHOD' BEGIN_ALIAS_INFO_METHOD(AliasName, ClassName, \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/Entrez2_link_id_.cpp:50:1: note: in expansion of macro 'BEGIN_ALIAS_INFO' BEGIN_ALIAS_INFO("Entrez2-link-id", CEntrez2_link_id, STD, (string)) ^ /bin/rm -f libentrez2.so .libentrez2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libentrez2.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC entrez2__.o entrez2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libentrez2.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libentrez2.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libentrez2.so ln -f .entrez2.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.entrez2.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/entrez2' cd objects/entrez2/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=entrez2cli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/entrez2' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2 TMPL=entrez2cli -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/entrez2/entrez2_client_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/entrez2/entrez2_client.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/entrez2_client.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/entrez2/entrez2_client_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/entrez2/entrez2_client.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/entrez2_client.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/entrez2_client_.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/entrez2/entrez2_client_.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libentrez2cli.so .libentrez2cli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libentrez2cli.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC entrez2_client.o entrez2_client_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lentrez2 -lxser -lxconnect -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libentrez2cli.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libentrez2cli.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libentrez2cli.so ln -f .entrez2cli.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.entrez2cli.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/entrez2' cd objects/taxon1/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/taxon1' cd /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1 && /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/new_module.sh taxon1 all Platform not defined for Linux aarch64 -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.29/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.29/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1' /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.29/c++ -opm /build/buildd/ncbi-blast+-2.2.29/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1' /usr/bin/make[4] (Makefile.taxon1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/taxon1' cd objects/taxon1/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=taxon1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/taxon1' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1 TMPL=taxon1 -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/taxon1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/Taxon1_data.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/taxon1__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/Taxon1_data.cpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/taxon1__.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/Taxon1_data_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/taxon1___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/Taxon1_data_.cpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/taxon1___.cpp:2: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/taxon1.cpp:34:0: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/taxon1.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/taxon1.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/cache.cpp -o cache.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialdef.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/typeref.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serial.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/cache.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistrasn.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/cache.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/utils.cpp -o utils.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/taxon1.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/utils.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/taxon1.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/utils.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/taxon1.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/ctreecont.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/ctreecont.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/taxon1/taxon1.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/ctreecont.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objects/taxon1/ctreecont.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libtaxon1.so .libtaxon1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtaxon1.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libtaxon1.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libtaxon1.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libtaxon1.so ln -f .taxon1.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.taxon1.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/taxon1' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/taxon1' cd corelib/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=test_boost UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/corelib' cd algo/blast/format/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/format' /usr/bin/make[4] (Makefile.xblastformat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/format' cd algo/blast/format/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xblastformat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/format' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format TMPL=xblastformat -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/version.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/version.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/format/blastfmtutil.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format/blastfmtutil.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_results.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/format/blastfmtutil.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format/blastfmtutil.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/object_manager.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format/blastxml_format.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format/blastxml_format.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/sseqloc.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/format/blast_format.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format/blast_format.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/format/blast_format.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format/blast_format.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format/blast_format.cpp:52:0: /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:165) [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format/blast_format.cpp: In member function 'void ncbi::CBlastFormat::x_SplitSeqAlign(ncbi::CConstRef, ncbi::objects::CSeq_align_set&, ncbi::objects::CSeq_align_set&, ncbi::blast::CPsiBlastIterationState::TSeqIds&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format/blast_format.cpp:435:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(count >= m_NumSummary) ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format/data4xmlformat.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format/data4xmlformat.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format/data4xmlformat.cpp:41:0: /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:165) [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format/build_archive.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format/build_archive.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/sseqloc.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/format/blast_format.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format/vecscreen_run.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/format/blast_format.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/format/vecscreen_run.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libxblastformat.so .libxblastformat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxblastformat.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blastfmtutil.o blastxml_format.o blast_format.o data4xmlformat.o build_archive.o vecscreen_run.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxblast -lalign_format -lxalnmgr -lxobjmgr -lxnetblast -lscoremat -lblastxml -lseq -lgeneral -lxser -ltables -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libxblastformat.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libxblastformat.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libxblastformat.so ln -f .xblastformat.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.xblastformat.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/format' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/format' cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/blastinput/unit_test' cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w APP_PROJ=blastinput_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/blastinput/unit_test' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/unit_test TMPL=blastinput_unit_test -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/blastinput/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp -o blastinput_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/object_manager.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp -o blast_scope_src_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_scope_src.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastinput_unit_test.o blast_scope_src_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -ltest_boost -lentrez2cli -lentrez2 -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lnsl -lz -lbz2 -ldl -lm -lpthread -o blastinput_unit_test strip blastinput_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f blastinput_unit_test /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f blastinput_unit_test /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/blastinput_unit_test make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/blastinput/unit_test' cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/dbindex/makeindex' cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w APP_PROJ=makeindex LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/fasta.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/fasta.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/tempstr.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/fasta.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:47: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:1817:34: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_DefaultRequestCtx; // Default request context ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2270:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_Username; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2271:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_AppName; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2272:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] mutable auto_ptr m_DefaultSessionId; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2287:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_ErrLogRC; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2288:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_TraceLogRC; ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/fasta.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:47: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/fasta.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:47: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp: At global scope: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:573:32: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_Args; ///< Parsed cmd.-line args ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/line_reader.hpp:40:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/fasta.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:47: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:2029:28: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_OutFile; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp: In function 'TFindFunc ncbi::FindFilesInDir(const ncbi::CDir&, const ncbi::CMask&, const ncbi::CMask&, TFindFunc&, ncbi::TFindFiles)': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:2704:18: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] contents(dir.GetEntriesPtr(kEmptyStr, CDir::fIgnoreRecursive | CDir::fIgnorePath)); ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_map.hpp:40:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/fasta.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:47: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_set.hpp: In member function 'void ncbi::NStaticArray::CPairConverter::Convert(void*, const void*) const': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_set.hpp:402:14: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] (MakeConverter(static_cast(0), ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_set.hpp:405:14: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] (MakeConverter(static_cast(0), ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/fasta.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:47: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp: In member function 'virtual void ncbi::CMkIndexApplication::Init()': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:67:42: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr< CArgDescriptions > arg_desc( new CArgDescriptions ); ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie main.o mkindex_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lseqdb -lblastdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lm -lpthread -o makembindex strip makembindex /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f makembindex /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f makembindex /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/makembindex make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/dbindex/makeindex' cd algo/blast/igblast/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/igblast' /usr/bin/make[4] (Makefile.igblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/igblast' cd algo/blast/igblast/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=igblast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/igblast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/igblast TMPL=igblast -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/igblast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/igblast/igblast.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/igblast/igblast.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/igblast/igblast.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/igblast/igblast.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libigblast.so .libigblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libigblast.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC igblast.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libigblast.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libigblast.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libigblast.so ln -f .igblast.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.igblast.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/igblast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/igblast' cd objtools/simple/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/simple' /usr/bin/make[4] (Makefile.xobjsimple.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/simple' cd objtools/simple/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xobjsimple UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/simple' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/simple TMPL=xobjsimple -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/simple' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/simple/simple_om.cpp -o simple_om.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/simple/simple_om.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/simple/simple_om.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/simple/simple_om.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/simple/simple_om.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libxobjsimple.so .libxobjsimple.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjsimple.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC simple_om.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lncbi_xloader_genbank -lxobjmgr -lseq -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libxobjsimple.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libxobjsimple.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libxobjsimple.so ln -f .xobjsimple.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.xobjsimple.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/simple' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/simple' cd algo/blast/unit_tests/api/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w APP_PROJ=blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp -o test_objmgr.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp -o blast_test_util.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp: In function 'Uint4 TestUtil::EndianIndependentBufferHash(const char*, Uint4, Uint4, Uint4)': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:258:44: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] Uint4 end_value = *((int *) & end_bytes); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp -o blast_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp -o bl2seq_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testMultiSeqSearchSymmetry::test_method()': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3333:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int q = 0; q < num_seqs; q++) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3334:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int s = 0; s < num_seqs; s++) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3337:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (idx1 == (q*num_seqs+q)) { // self-hit ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/sseqloc.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35:0: /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::RemoteOptionsTest::test_method()': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:71:60: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] BOOST_CHECK_NO_THROW(opts.SetFilterString("m L", false)); /* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:109:5: note: in definition of macro 'BOOST_CHECK_NO_THROW_IMPL' S; \ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testRemoteFilterString::test_method()': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1249:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1253:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1258:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1260:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1264:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1266:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1270:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1272:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1276:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1278:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1245:50: warning: typedef 'TBlast4Opts' locally defined but not used [-Wunused-local-typedefs] typedef ncbi::objects::CBlast4_parameters TBlast4Opts; ^ In file included from /usr/include/boost/test/unit_test.hpp:19:0, from /usr/include/boost/test/auto_unit_test.hpp:18, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:66, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testOptionsDeepCopy::test_method()': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1316:57: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:165) [-Wdeprecated-declarations] BOOST_CHECK_EQUAL(string(optsClone->GetFilterString()), string("L;m;")); /* NCBI_FAKE_WARNING */ ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp -o blastfilter_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/simple/simple_om.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp -o uniform_search_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp -o remote_blast_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/services/blast_services.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp -o ntscan_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp -o version_reference_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp -o aalookup_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp -o subj_ranges_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/subj_ranges_set.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/subj_ranges_set.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp -o blastengine_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function 'void blastengine::testBlastpPrelimSearch::test_method()': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:441:33: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] options->SetFilterString("L"); /* NCBI_FAKE_WARNING */ ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp -o blasthits_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp -o gapinfo_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp -o rps_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Std_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Std_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr_conf.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbimtx.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbithr.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/hspstream_test_util.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp -o scoreblk_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/util/sequence.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp -o seqalign_cmp.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/range.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/seqalign_cmp.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/seqalign_cmp.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp -o seqalign_set_convert.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/range.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp -o split_query_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp -o phiblast_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp -o prelimsearch_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp -o psiblast_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp -o psibl2seq_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp -o traceback_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp -o tracebacksearch_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/traceback_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp -o msa2pssm_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp -o optionshandle_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp -o hspfilter_culling_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp -o hspfilter_besthit_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp -o psiblast_iteration_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp -o pssmcreate_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp -o blastdiag_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp -o blastextend_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp -o blastsetup_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/util_misc.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/util/sequence.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In static member function 'static void CQueryDataTestFixture::s_ObjMgrFree_QueryFactory_LocalDataFromBioseq(ncbi::TGi)': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:495:47: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bs));/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In static member function 'static void CQueryDataTestFixture::s_ObjMgrFree_QueryFactory_LocalDataFromBioseq_set(const std::vector&)': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:509:47: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bs));/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In member function 'void QueryData::ObjMgr_QueryFactory_LocalData_GetSumOfSequenceLengths::test_method()': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:580:43: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bs)); /* NCBI_FAKE_WARNING */ ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/util/sequence.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp -o redoalignment_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/remote_blast.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/search_strategy.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp -o setupfactory_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp -o mockseqsrc2_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp -o seqinfosrc_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/seqinfosrc_seqvec.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp -o ntlookup_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/random_gen.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/seqsrc_mock.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp -o pssm_test_util.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp -o pssmcreate_cdd_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.29/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp -o delta_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie test_objmgr.o blast_test_util.o blast_unit_test.o bl2seq_unit_test.o gencode_singleton_unit_test.o blastoptions_unit_test.o blastfilter_unit_test.o uniform_search_unit_test.o remote_blast_unit_test.o aascan_unit_test.o ntscan_unit_test.o version_reference_unit_test.o aalookup_unit_test.o subj_ranges_unit_test.o blastengine_unit_test.o linkhsp_unit_test.o blasthits_unit_test.o gapinfo_unit_test.o rps_unit_test.o hspstream_unit_test.o hspstream_test_util.o scoreblk_unit_test.o seqalign_cmp.o seqalign_set_convert.o split_query_unit_test.o phiblast_unit_test.o prelimsearch_unit_test.o psiblast_unit_test.o psibl2seq_unit_test.o traceback_unit_test.o tracebacksearch_unit_test.o msa2pssm_unit_test.o optionshandle_unit_test.o hspfilter_culling_unit_test.o hspfilter_besthit_unit_test.o psiblast_iteration_unit_test.o pssmcreate_unit_test.o blastdiag_unit_test.o blastextend_unit_test.o blastsetup_unit_test.o pssmenginefreqratios_unit_test.o querydata_unit_test.o queryinfo_unit_test.o redoalignment_unit_test.o search_strategy_unit_test.o setupfactory_unit_test.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o seqinfosrc_unit_test.o ntlookup_unit_test.o seqsrc_unit_test.o seqsrc_mock.o pssm_test_util.o pssmcreate_cdd_unit_test.o delta_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lnsl -lz -lbz2 -ldl -lm -lpthread -o blast_unit_test strip blast_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f blast_unit_test /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f blast_unit_test /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/blast_unit_test make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/blast_format' cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w APP_PROJ=blast_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/blast_format TMPL=blast_format_unit_test -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiutil.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiutil.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp: In member function 'void blast_archive::BuildArchiveWithDB::test_method()': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:79:43: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bss_ref)); ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp: In member function 'void blast_archive::BuildArchiveWithBl2seq::test_method()': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:118:43: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bss_ref)); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiutil.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie seqalignfilter_unit_test.o blastfmtutil_unit_test.o build_archive_unit_test.o vecscreen_run_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lm -lpthread -o blast_format_unit_test strip blast_format_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f blast_format_unit_test /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f blast_format_unit_test /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/blast_format_unit_test make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/blast_format' cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/blastdb' cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w APP_PROJ=bdbloader_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/blastdb TMPL=bdbloader_unit_test -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include -I../ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp -o bdbloader_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie bdbloader_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lnsl -lz -lbz2 -ldl -lm -lpthread -o bdbloader_unit_test strip bdbloader_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f bdbloader_unit_test /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f bdbloader_unit_test /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/bdbloader_unit_test make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/blastdb' cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w APP_PROJ=seqdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_unit_test -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp: In function 'void s_TestPartialAmbigRange(ncbi::CSeqDB&, int, int, int)': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:78:18: warning: variable 'wholeL' set but not used [-Wunused-but-set-variable] int wholeL(0); ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp: In member function 'void seqdb::OidRanges::test_method()': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1525:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (((mask == eOdd) && (first != 3) || (second != 7)) || (mask == eAll)) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp: In member function 'void seqdb::GetTaxIDs::test_method()': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1868:27: warning: typedef 'TGTMap' locally defined but not used [-Wunused-local-typedefs] typedef map TGTMap; ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp: In member function 'void seqdb::GetTaxIDsVector::test_method()': /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1908:27: warning: typedef 'TGTMap' locally defined but not used [-Wunused-local-typedefs] typedef map TGTMap; ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie seqdb_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -ltest_boost -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread -o seqdb_unit_test strip seqdb_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f seqdb_unit_test /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f seqdb_unit_test /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/seqdb_unit_test make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' cd app/blast/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/Makefile.legacy_blast builddir=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast -w all make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/legacy_blast.pl /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/legacy_blast.pl /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/legacy_blast.pl make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/Makefile.update_blastdb builddir=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast -w all make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/update_blastdb.pl /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/update_blastdb.pl /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/update_blastdb.pl make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/make[4] (Makefile.blast_app_util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blast_app_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast TMPL=blast_app_util -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/object_manager.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/blast_app_util.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/blast_app_util.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/blast_app_util.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/blast_app_util.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libblast_app_util.a /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libblast_app_util.a /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libblast_app_util.a ln -f .blast_app_util.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.blast_app_util.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=blast_formatter LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast TMPL=blast_formatter -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/blast_formatter.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/blast_formatter.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blast_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o blast_formatter strip blast_formatter /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f blast_formatter /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f blast_formatter /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/blast_formatter make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=blastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast TMPL=blastn -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/blastn_app.cpp -o blastn_app.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/blastn_app.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/local_blast.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/blastn_app.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o blastn strip blastn /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f blastn /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f blastn /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/blastn make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=blastp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast TMPL=blastp -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/blastp_app.cpp -o blastp_app.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/blastp_app.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/local_blast.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/blastp_app.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastp_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o blastp strip blastp /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f blastp /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f blastp /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/blastp make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=blastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast TMPL=blastx -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/blastx_app.cpp -o blastx_app.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/blastx_app.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/local_blast.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/blastx_app.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o blastx strip blastx /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f blastx /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f blastx /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/blastx make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=deltablast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast TMPL=deltablast -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/deltablast_app.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/deltablast.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/deltablast_app.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie deltablast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o deltablast strip deltablast /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f deltablast /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f deltablast /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/deltablast make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=psiblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast TMPL=psiblast -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/psiblast_app.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/psiblast_app.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie psiblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o psiblast strip psiblast /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f psiblast /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f psiblast /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/psiblast make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=rpsblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast TMPL=rpsblast -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/rpsblast_app.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/local_blast.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/rpsblast_app.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie rpsblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o rpsblast strip rpsblast /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f rpsblast /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f rpsblast /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/rpsblast make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=rpstblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast TMPL=rpstblastn -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/rpstblastn_app.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/local_blast.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/rpstblastn_app.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie rpstblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o rpstblastn strip rpstblastn /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f rpstblastn /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f rpstblastn /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/rpstblastn make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=seedtop LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast TMPL=seedtop -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/seedtop_app.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/seedtop.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/seedtop_app.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie seedtop_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o seedtop strip seedtop /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f seedtop /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f seedtop /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/seedtop make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=tblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast TMPL=tblastn -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/tblastn_app.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/local_blast.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/tblastn_app.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie tblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o tblastn strip tblastn /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f tblastn /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f tblastn /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/tblastn make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=tblastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast TMPL=tblastx -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/tblastx_app.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/local_blast.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blast/tblastx_app.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie tblastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o tblastx strip tblastx /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f tblastx /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f tblastx /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/tblastx make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' cd objtools/blast/seqdb_writer/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make[4] (Makefile.writedb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_writer' cd objtools/blast/seqdb_writer/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=writedb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp: In member function 'ncbi::CBlastDbBlob& ncbi::CWriteDB_Impl::SetBlobData(int)': /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:1370:26: warning: typedef 'TBlob' locally defined but not used [-Wunused-local-typedefs] typedef CBlastDbBlob TBlob; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Align_def_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Align_def.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq__.hpp:1, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Align_def_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Align_def.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq__.hpp:1, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Align_def_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Align_def.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq__.hpp:1, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/sequtil/sequtil_convert.hpp:34, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Align_def_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Align_def.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq__.hpp:1, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Align_def_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Align_def.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq__.hpp:1, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Align_def_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Align_def.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq__.hpp:1, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastdb/Blast_filter_program_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastdb/Blast_filter_program.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/mask_info_registry.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastdb/Blast_filter_program_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastdb/Blast_filter_program.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/mask_info_registry.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/taxid_set.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/taxid_set.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/build_db.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/build_db.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/typeinfo.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/seqloc__.hpp:1, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:57, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/criteria.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:59, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/criteria.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libwritedb.so .libwritedb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libwritedb.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lseqdb -lxobjread -lxobjmgr -lblastdb -lseqset -lseq -lgeneral -lxser -lsequtil -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libwritedb.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libwritedb.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libwritedb.so ln -f .writedb.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.writedb.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_writer' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_writer' cd app/blastdb/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=blastdb_aliastool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb TMPL=blastdb_aliastool -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/blastdb_aliastool.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/blastdb_aliastool.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastdb_aliastool.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o blastdb_aliastool strip blastdb_aliastool /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f blastdb_aliastool /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f blastdb_aliastool /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/blastdb_aliastool make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=blastdbcheck LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb TMPL=blastdbcheck -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/blastdbcheck.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/blastdbcheck.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastdbcheck.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o blastdbcheck strip blastdbcheck /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f blastdbcheck /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f blastdbcheck /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/blastdbcheck make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=blastdbcmd LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb TMPL=blastdbcmd -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/blastdbcmd.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/blastdbcmd.cpp:43: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastdbcmd.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o blastdbcmd strip blastdbcmd /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f blastdbcmd /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f blastdbcmd /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/blastdbcmd make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=blastdbcp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb TMPL=blastdbcp -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/blastdbcp.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/build_db.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/blastdbcp.cpp:33: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastdbcp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxconnext -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o blastdbcp strip blastdbcp /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f blastdbcp /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f blastdbcp /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/blastdbcp make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=convert2blastmask LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb TMPL=convert2blastmask -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/convert2blastmask.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/fasta.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/convert2blastmask.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie convert2blastmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lseqmasks_io -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o convert2blastmask strip convert2blastmask /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f convert2blastmask /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f convert2blastmask /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/convert2blastmask make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=makeblastdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb TMPL=makeblastdb -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/version.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/version.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/makeblastdb.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/makeblastdb.cpp:42: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/build_db.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/masked_range_set.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/masked_range_set.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/build_db.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/masked_range_set.hpp:33, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/masked_range_set.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie makeblastdb.o masked_range_set.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o makeblastdb strip makeblastdb /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f makeblastdb /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f makeblastdb /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/makeblastdb make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=makeprofiledb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb TMPL=makeprofiledb -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/makeprofiledb.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistrasn.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/blastdb/makeprofiledb.cpp:44: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie makeprofiledb.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o makeprofiledb strip makeprofiledb /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f makeprofiledb /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f makeprofiledb /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/makeprofiledb make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' cd app/dustmasker/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/dustmasker' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/dustmasker' cd app/dustmasker/ && /usr/bin/make -w APP_PROJ=dustmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/dustmasker' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/dustmasker TMPL=dustmasker -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/dustmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/dustmasker/main.cpp -o main.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/dustmasker/main.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/dustmasker/dust_mask_app.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/dustmasker/main.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidbg.hpp:47:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/dustmasker/dust_mask_app.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:1817:34: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_DefaultRequestCtx; // Default request context ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2270:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_Username; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2271:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_AppName; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2272:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] mutable auto_ptr m_DefaultSessionId; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2287:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_ErrLogRC; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2288:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_TraceLogRC; ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/line_reader.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/dustmasker/dust_mask_app.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:48, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/line_reader.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/dustmasker/dust_mask_app.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp: At global scope: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:573:32: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_Args; ///< Parsed cmd.-line args ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/line_reader.hpp:40:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/dustmasker/dust_mask_app.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:2029:28: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_OutFile; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp: In function 'TFindFunc ncbi::FindFilesInDir(const ncbi::CDir&, const ncbi::CMask&, const ncbi::CMask&, TFindFunc&, ncbi::TFindFiles)': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:2704:18: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] contents(dir.GetEntriesPtr(kEmptyStr, CDir::fIgnoreRecursive | CDir::fIgnorePath)); ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_map.hpp:40:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/fasta.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/dustmasker/dust_mask_app.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_set.hpp: In member function 'void ncbi::NStaticArray::CPairConverter::Convert(void*, const void*) const': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_set.hpp:402:14: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] (MakeConverter(static_cast(0), ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_set.hpp:405:14: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] (MakeConverter(static_cast(0), ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/fasta.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/dustmasker/dust_mask_app.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_ci.hpp:41:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/dustmasker/dust_mask_app.cpp:49: /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_entry_ci.hpp: In member function 'std::auto_ptr ncbi::objects::CSeq_entry_I::operator->() const': /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_entry_ci.hpp:314:47: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr rval( new CSeq_entry_EditHandle( CSeq_entry_CI::operator*() ) ); ^ /build/buildd/ncbi-blast+-2.2.29/c++/src/app/dustmasker/dust_mask_app.cpp: In member function 'virtual void ncbi::CDustMaskApplication::Init()': /build/buildd/ncbi-blast+-2.2.29/c++/src/app/dustmasker/dust_mask_app.cpp:83:42: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr< CArgDescriptions > arg_desc( new CArgDescriptions ); ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie main.o dust_mask_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lseqdb -lblastdb -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lm -lpthread -o dustmasker strip dustmasker /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f dustmasker /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f dustmasker /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/dustmasker make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/dustmasker' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/dustmasker' cd algo/segmask/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/segmask' /usr/bin/make[4] (Makefile.xalgosegmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/segmask' cd algo/segmask/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xalgosegmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/segmask' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/algo/segmask TMPL=xalgosegmask -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/segmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/segmask/segmask.cpp -o segmask.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:35, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/segmask/segmask.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/segmask/segmask.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/segmask/segmask.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/algo/segmask/segmask.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libxalgosegmask.so .libxalgosegmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgosegmask.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC segmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lblast -lxobjmgr -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libxalgosegmask.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libxalgosegmask.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libxalgosegmask.so ln -f .xalgosegmask.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.xalgosegmask.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/segmask' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/segmask' cd app/segmasker/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/segmasker' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/segmasker' cd app/segmasker/ && /usr/bin/make -w APP_PROJ=segmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/segmasker' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/segmasker TMPL=segmasker -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/segmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/segmasker/segmasker.cpp -o segmasker.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/segmasker/segmasker.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/segmasker/segmasker.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie segmasker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxobjsimple -lseqmasks_io -lxalgosegmask -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lm -lpthread -o segmasker strip segmasker /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f segmasker /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f segmasker /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/segmasker make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/segmasker' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/segmasker' cd app/winmasker/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/winmasker' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/winmasker' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/winmasker -w all make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/winmasker' /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f /build/buildd/ncbi-blast+-2.2.29/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f /build/buildd/ncbi-blast+-2.2.29/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/windowmasker_2.2.22_adapter.py make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/winmasker' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/winmasker' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/winmasker' cd app/winmasker/ && /usr/bin/make -w APP_PROJ=winmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/winmasker' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/app/winmasker TMPL=winmasker -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/winmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/winmasker/main.cpp -o main.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/winmasker/win_mask_app.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/winmasker/main.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/fasta.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/winmasker/win_mask_app.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/readers/fasta.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/winmasker/win_mask_app.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/tempstr.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/dustmask/symdust.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:1817:34: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_DefaultRequestCtx; // Default request context ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2270:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_Username; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2271:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_AppName; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2272:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] mutable auto_ptr m_DefaultSessionId; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2287:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_ErrLogRC; ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbidiag.hpp:2288:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_TraceLogRC; ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/dustmask/symdust.hpp:45:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/dustmask/symdust.hpp:48, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_param.hpp:41:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_map.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/tse_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/dustmask/symdust.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp: At global scope: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:573:32: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_Args; ///< Parsed cmd.-line args ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_map.hpp:40:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/tse_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/bioseq_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/algo/dustmask/symdust.hpp:50, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_set.hpp: In member function 'void ncbi::NStaticArray::CPairConverter::Convert(void*, const void*) const': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_set.hpp:402:14: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] (MakeConverter(static_cast(0), ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/util/static_set.hpp:405:14: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.8/backward/auto_ptr.h:87) [-Wdeprecated-declarations] (MakeConverter(static_cast(0), ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqdb -lblastdb -lseqmasks_io -ltables -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lm -lpthread -o windowmasker strip windowmasker /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f windowmasker /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f windowmasker /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/windowmasker make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/winmasker' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/winmasker' cd objmgr/split/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr/split' /usr/bin/make[4] (Makefile.id2_split.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr/split' cd objmgr/split/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=id2_split UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr/split' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split TMPL=id2_split -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr/split' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/blob_splitter.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/blob_splitter.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/split_blob.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/blob_splitter.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/blob_splitter.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/blob_splitter_params.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/blob_splitter_params.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/split_blob.cpp -o split_blob.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/split_blob.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/split_blob.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/split_blob.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/split_blob.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/blob_splitter_impl.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/blob_splitter_impl.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/split_blob.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/blob_splitter_impl.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/blob_splitter_impl.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/blob_splitter_parser.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/split_blob.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/blob_splitter_parser.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/blob_splitter_impl.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/blob_splitter_maker.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/split_blob.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/blob_splitter_maker.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/id_range.cpp -o id_range.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/id_range.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/id_range.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/id_range.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/id_range.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/object_splitinfo.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/object_splitinfo.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/object_splitinfo.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/object_splitinfo.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/asn_sizer.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/asn_sizer.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/asn_sizer.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/asn_sizer.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/annot_piece.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/annot_piece.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/id_range.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/annot_piece.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/annot_piece.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/chunk_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/chunk_info.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/place_id.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/chunk_info.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/chunk_info.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/size.cpp -o size.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/size.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/size.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/split/asn_sizer.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/size.cpp:37: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.so .libid2_split.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid2_split.so -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lxobjmgr -lseqsplit -lseqset -lseq -lgeneral -lxser -lxcompress -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f libid2_split.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib ln -f libid2_split.so /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib/libid2_split.so ln -f .id2_split.dep /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/status/.id2_split.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr/split' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr/split' cd objtools/align_format/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/align_format/unit_test' cd objtools/align_format/unit_test/ && /usr/bin/make -w APP_PROJ=align_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/unit_test TMPL=align_format_unit_test -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp -o showdefline_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiutil.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/util/sequence.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp -o showalign_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:39: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/unit_test/blast_test_util.cpp -o blast_test_util.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp -o vectorscreen_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:43: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp -o tabularinof_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/test_boost.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:43: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp -o aln_printer_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbifile.hpp:46, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie showdefline_unit_test.o showalign_unit_test.o blast_test_util.o vectorscreen_unit_test.o tabularinof_unit_test.o aln_printer_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -ltest_boost -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lxcgi -lxhtml -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lm -lpthread -o align_format_unit_test strip align_format_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f align_format_unit_test /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f align_format_unit_test /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/align_format_unit_test make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/align_format/unit_test' cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w APP_PROJ=blastdb_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/blastdb_format/unit_test TMPL=blastdb_format_unit_test -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp -o seq_writer_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie seq_writer_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -ltest_boost -lblastdb_format -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread -o blastdb_format_unit_test strip blastdb_format_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f blastdb_format_unit_test /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f blastdb_format_unit_test /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/blastdb_format_unit_test make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader/demo' cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w APP_PROJ=gene_info_reader LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie gene_info_reader_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lgene_info -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lm -lpthread -o gene_info_reader strip gene_info_reader /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f gene_info_reader /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f gene_info_reader /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/gene_info_reader make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader/demo' cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w APP_PROJ=gene_info_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/gene_info_reader/unit_test TMPL=gene_info_unit_test -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp -o gene_info_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp:31: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie gene_info_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -ltest_boost -lgene_info -lxncbi -lm -lpthread -o gene_info_unit_test strip gene_info_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f gene_info_unit_test /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f gene_info_unit_test /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/gene_info_unit_test make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader/demo' cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w APP_PROJ=seqdb_demo LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:34: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie seqdb_demo.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lm -lpthread -o seqdb_demo strip seqdb_demo /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f seqdb_demo /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f seqdb_demo /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/seqdb_demo make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader/demo' cd objtools/blast/seqdb_reader/test/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader/test' cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiargs.hpp:84, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiapp.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:40: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:41: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie seqdb_perf.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lm -lpthread -o seqdb_perf strip seqdb_perf /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f seqdb_perf /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f seqdb_perf /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/seqdb_perf make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader/test' cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w APP_PROJ=writedb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_unit_test -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp -o writedb_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp -o criteria_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbitime.hpp:62, from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbi_system.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:59, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:43: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie writedb_unit_test.o criteria_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lm -lpthread -o writedb_unit_test strip writedb_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f writedb_unit_test /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f writedb_unit_test /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/writedb_unit_test make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' cd objtools/blast/services/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/services/unit_test' cd objtools/blast/services/unit_test/ && /usr/bin/make -w APP_PROJ=blast_services_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/services/unit_test TMPL=blast_services_unit_test -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.29/c++/include /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp -o blast_services_test.o In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/services/blast_services.hpp:36, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3947:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ /build/buildd/ncbi-blast+-2.2.29/c++/include/corelib/ncbistr.hpp:3968:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ^ In file included from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.29/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/buildd/ncbi-blast+-2.2.29/c++/include/objtools/blast/services/blast_services.hpp:38, from /build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp:35: /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.29/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -rdynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blast_services_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/lib -ltest_boost -lblast_services -lxnetblastcli -lxnetblast -lseqdb -lblastdb -lscoremat -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lnsl -lz -lbz2 -ldl -lm -lpthread -o blast_services_unit_test strip blast_services_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.29/c++/scripts/common/impl/if_diff.sh ln -f blast_services_unit_test /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin ln -f blast_services_unit_test /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/bin/blast_services_unit_test make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/services/unit_test' make[3]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build' make[2]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build' make[1]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29' debian/rules override_dh_auto_test make[1]: Entering directory '/build/buildd/ncbi-blast+-2.2.29' dh_auto_test make[2]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++' if test -s ""; then \ cd /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build && /usr/bin/make -w check_p RUN_CHECK=Y; \ else \ cd /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build && /usr/bin/make -w check_r RUN_CHECK=Y; \ fi make[3]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build' ====================================================================== make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build' /usr/bin/make -C corelib -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/corelib' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/corelib' /usr/bin/make -C util -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util' /usr/bin/make -C regexp -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/regexp' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/util/regexp TMPL=regexp -w mark-as-disabled make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/regexp' make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/regexp' make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/regexp' make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/regexp' /usr/bin/make -C xregexp -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/xregexp' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/xregexp' /usr/bin/make -C compress -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/compress' /usr/bin/make -C bzip2 -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/compress/bzip2' NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/compress/bzip2' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/bzip2 TMPL=bzip2 -w mark-as-disabled make[9]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/compress/bzip2' make[9]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/compress/bzip2' make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/compress/bzip2' make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/compress/bzip2' /usr/bin/make -C zlib -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/compress/zlib' NOTE: Skipping project zlib due to unmet requirements: LocalZ make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/compress/zlib' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/util/compress/zlib TMPL=zlib -w mark-as-disabled make[9]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/compress/zlib' make[9]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/compress/zlib' make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/compress/zlib' make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/compress/zlib' /usr/bin/make -C api -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/compress/api' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/compress/api' make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/compress' echo 'Warning: non-existent sub-project "diff"' Warning: non-existent sub-project "diff" echo 'Warning: non-existent sub-project "image"' Warning: non-existent sub-project "image" /usr/bin/make -C tables -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/tables' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/tables' /usr/bin/make -C creaders -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/creaders' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/creaders' /usr/bin/make -C sequtil -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/sequtil' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/sequtil' /usr/bin/make -C bitset -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/bitset' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util/bitset' echo 'Warning: non-existent sub-project "qparse"' Warning: non-existent sub-project "qparse" echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/util' /usr/bin/make -C connect -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/connect' /usr/bin/make -C services -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/connect/services' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/connect/services' /usr/bin/make -C ext -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/connect/ext' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/connect/ext' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "daemons"' Warning: non-existent sub-project "daemons" make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/connect' /usr/bin/make -C cgi -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/cgi' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/cgi' /usr/bin/make -C html -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/html' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/html' /usr/bin/make -C build-system -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/build-system' /usr/bin/make -C project_tree_builder -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/build-system/project_tree_builder' SKIP -- build-system/project_tree_builder/project_tree_builder /usr/bin/make -C msbuild -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/build-system/project_tree_builder/msbuild' NOTE: Skipping project msbuild due to unmet requirements: MSWin make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/build-system/project_tree_builder/msbuild' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w mark-as-disabled make[9]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[9]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/build-system/project_tree_builder' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/build-system' /usr/bin/make -C serial -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/serial' /usr/bin/make -C datatool -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/serial/datatool' TEST -- serial/datatool/datatool make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/serial/datatool' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "soap"' Warning: non-existent sub-project "soap" make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/serial' echo 'Warning: non-existent sub-project "db"' Warning: non-existent sub-project "db" echo 'Warning: non-existent sub-project "dbapi"' Warning: non-existent sub-project "dbapi" /usr/bin/make -C objects -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects' /usr/bin/make -C general -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/general' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/general' /usr/bin/make -C biblio -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/biblio' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/biblio' /usr/bin/make -C medline -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/medline' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/medline' /usr/bin/make -C pub -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/pub' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/pub' /usr/bin/make -C seqcode -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqcode' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqcode' /usr/bin/make -C seq -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seq' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seq' /usr/bin/make -C seqset -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqset' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqset' /usr/bin/make -C submit -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/submit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/submit' /usr/bin/make -C seqedit -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqedit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqedit' /usr/bin/make -C seqsplit -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqsplit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqsplit' /usr/bin/make -C id1 -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/id1' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/id1' /usr/bin/make -C id2 -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/id2' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/id2' /usr/bin/make -C entrez2 -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/entrez2' echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/entrez2' /usr/bin/make -C pubmed -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/pubmed' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/pubmed' /usr/bin/make -C medlars -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/medlars' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/medlars' /usr/bin/make -C mla -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/mla' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/mla' /usr/bin/make -C proj -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/proj' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/proj' /usr/bin/make -C scoremat -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/scoremat' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/scoremat' /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blast' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blast' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blastdb' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blastdb' /usr/bin/make -C blastxml -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blastxml' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/blastxml' /usr/bin/make -C mmdb -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/mmdb' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/mmdb' /usr/bin/make -C cn3d -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/cn3d' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/cn3d' /usr/bin/make -C cdd -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/cdd' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/cdd' /usr/bin/make -C ncbimime -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/ncbimime' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/ncbimime' /usr/bin/make -C pcsubstance -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/pcsubstance' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/pcsubstance' /usr/bin/make -C pcassay -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/pcassay' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/pcassay' /usr/bin/make -C gbseq -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/gbseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/gbseq' /usr/bin/make -C insdseq -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/insdseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/insdseq' /usr/bin/make -C tinyseq -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/tinyseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/tinyseq' /usr/bin/make -C biotree -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/biotree' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/biotree' /usr/bin/make -C entrezgene -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/entrezgene' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/entrezgene' /usr/bin/make -C omssa -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/omssa' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/omssa' /usr/bin/make -C remap -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/remap' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/remap' /usr/bin/make -C seqtest -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqtest' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/seqtest' /usr/bin/make -C taxon1 -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/taxon1' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/taxon1' /usr/bin/make -C taxon3 -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/taxon3' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/taxon3' /usr/bin/make -C gbproj -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/gbproj' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/gbproj' /usr/bin/make -C trackmgr -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/trackmgr' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/trackmgr' /usr/bin/make -C valerr -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/valerr' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/valerr' /usr/bin/make -C valid -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/valid' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/valid' /usr/bin/make -C access -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/access' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/access' /usr/bin/make -C docsum -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/docsum' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/docsum' /usr/bin/make -C featdef -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/featdef' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/featdef' /usr/bin/make -C genomecoll -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/genomecoll' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/genomecoll' /usr/bin/make -C homologene -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/homologene' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/homologene' /usr/bin/make -C mim -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/mim' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/mim' /usr/bin/make -C objprt -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/objprt' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/objprt' /usr/bin/make -C variation -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/variation' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/variation' /usr/bin/make -C macro -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/macro' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/macro' /usr/bin/make -C genesbyloc -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/genesbyloc' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/genesbyloc' /usr/bin/make -C coords -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/coords' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects/coords' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objects' /usr/bin/make -C objmgr -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /usr/bin/make -C util -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr/util' echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr/util' /usr/bin/make -C split -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr/split' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr/split' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objmgr' /usr/bin/make -C objtools -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools' echo 'Warning: non-existent sub-project "unit_test_util"' Warning: non-existent sub-project "unit_test_util" /usr/bin/make -C readers -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/readers' echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/readers' /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast' /usr/bin/make -C seqdb_reader -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -C demo -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader/demo' SKIP -- objtools/blast/seqdb_reader/demo/seqdb_demo make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/make -C test -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader/test' TEST -- objtools/blast/seqdb_reader/test/seqdb_perf make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -C seqdb_writer -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' TEST -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -C gene_info_reader -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make -C demo -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader/demo' SKIP -- objtools/blast/gene_info_reader/demo/gene_info_reader make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' TEST -- objtools/blast/gene_info_reader/unit_test/gene_info_unit_test make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/gene_info_reader' echo 'Warning: non-existent sub-project "gene_info_writer"' Warning: non-existent sub-project "gene_info_writer" /usr/bin/make -C services -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/services' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/services/unit_test' SKIP -- objtools/blast/services/unit_test/blast_services_unit_test make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/services/unit_test' make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/services' /usr/bin/make -C blastdb_format -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' TEST -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast/blastdb_format' make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/blast' echo 'Warning: non-existent sub-project "lds"' Warning: non-existent sub-project "lds" echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" /usr/bin/make -C data_loaders -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders' /usr/bin/make -C genbank -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -C cache -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/make -C pubseq -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/pubseq' NOTE: Skipping project pubseq due to unmet requirements: PubSeqOS make[9]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/pubseq' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/pubseq TMPL=ncbi_xreader_pubseqos -w mark-as-disabled make[10]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/pubseq' make[10]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/pubseq' make[9]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/pubseq' make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/pubseq' /usr/bin/make -C id2 -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make -C id1 -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/make -C pubseq2 -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/pubseq2' NOTE: Skipping project pubseq2 due to unmet requirements: PubSeqOS make[9]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/pubseq2' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.29/c++/src/objtools/data_loaders/genbank/pubseq2 TMPL=ncbi_xreader_pubseqos2 -w mark-as-disabled make[10]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/pubseq2' make[10]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/pubseq2' make[9]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/pubseq2' make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/pubseq2' /usr/bin/make -C gicache -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/gicache' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank/gicache' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/genbank' echo 'Warning: non-existent sub-project "lds"' Warning: non-existent sub-project "lds" echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" /usr/bin/make -C blastdb -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/blastdb' echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders/blastdb' echo 'Warning: non-existent sub-project "cdd"' Warning: non-existent sub-project "cdd" echo 'Warning: non-existent sub-project "trace"' Warning: non-existent sub-project "trace" echo 'Warning: non-existent sub-project "patcher"' Warning: non-existent sub-project "patcher" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/data_loaders' /usr/bin/make -C simple -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/simple' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/simple' /usr/bin/make -C alnmgr -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/alnmgr' echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/alnmgr' echo 'Warning: non-existent sub-project "cddalignview"' Warning: non-existent sub-project "cddalignview" echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "manip"' Warning: non-existent sub-project "manip" /usr/bin/make -C format -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/format' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/format' echo 'Warning: non-existent sub-project "validator"' Warning: non-existent sub-project "validator" echo 'Warning: non-existent sub-project "discrepancy_report"' Warning: non-existent sub-project "discrepancy_report" echo 'Warning: non-existent sub-project "asniotest"' Warning: non-existent sub-project "asniotest" echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" echo 'Warning: non-existent sub-project "edit"' Warning: non-existent sub-project "edit" echo 'Warning: non-existent sub-project "writers"' Warning: non-existent sub-project "writers" /usr/bin/make -C cleanup -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/cleanup' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/cleanup' /usr/bin/make -C seqmasks_io -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/seqmasks_io' echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/seqmasks_io' echo 'Warning: non-existent sub-project "eutils"' Warning: non-existent sub-project "eutils" /usr/bin/make -C align_format -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/align_format' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/align_format/unit_test' TEST -- objtools/align_format/unit_test/align_format_unit_test make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/align_format/unit_test' make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools/align_format' echo 'Warning: non-existent sub-project "snputil"' Warning: non-existent sub-project "snputil" echo 'Warning: non-existent sub-project "uudutil"' Warning: non-existent sub-project "uudutil" make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/objtools' echo 'Warning: non-existent sub-project "ctools"' Warning: non-existent sub-project "ctools" /usr/bin/make -C algo -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo' /usr/bin/make -C dustmask -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/dustmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/dustmask' /usr/bin/make -C winmask -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/winmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/winmask' echo 'Warning: non-existent sub-project "sequence"' Warning: non-existent sub-project "sequence" /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast' /usr/bin/make -C composition_adjustment -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/composition_adjustment' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make -C core -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/core' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/core' /usr/bin/make -C dbindex -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make -C makeindex -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/dbindex/makeindex' SKIP -- algo/blast/dbindex/makeindex/makeindex make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/dbindex/makeindex' make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/dbindex' echo 'Warning: non-existent sub-project "dbindex_search"' Warning: non-existent sub-project "dbindex_search" /usr/bin/make -C api -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/api' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/api' /usr/bin/make -C format -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/format' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/format' /usr/bin/make -C blastinput -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/blastinput/unit_test' TEST -- algo/blast/blastinput/unit_test/blastinput_unit_test make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/blastinput/unit_test' echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -C igblast -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/igblast' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/igblast' echo 'Warning: non-existent sub-project "gumbel_params"' Warning: non-existent sub-project "gumbel_params" /usr/bin/make -C unit_tests -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests' /usr/bin/make -C blast_format -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/blast_format' TEST -- algo/blast/unit_tests/blast_format/blast_format_unit_test make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/blastdb' TEST -- algo/blast/unit_tests/blastdb/bdbloader_unit_test make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/make -C seqdb_reader -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make -C api -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blast_unit_test make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests/api' make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast/unit_tests' make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/blast' /usr/bin/make -C segmask -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/segmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo/segmask' echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" echo 'Warning: non-existent sub-project "structure"' Warning: non-existent sub-project "structure" echo 'Warning: non-existent sub-project "ms"' Warning: non-existent sub-project "ms" echo 'Warning: non-existent sub-project "gnomon"' Warning: non-existent sub-project "gnomon" echo 'Warning: non-existent sub-project "tree"' Warning: non-existent sub-project "tree" echo 'Warning: non-existent sub-project "phy_tree"' Warning: non-existent sub-project "phy_tree" echo 'Warning: non-existent sub-project "seqqa"' Warning: non-existent sub-project "seqqa" echo 'Warning: non-existent sub-project "cobalt"' Warning: non-existent sub-project "cobalt" echo 'Warning: non-existent sub-project "text"' Warning: non-existent sub-project "text" echo 'Warning: non-existent sub-project "volume_merge"' Warning: non-existent sub-project "volume_merge" echo 'Warning: non-existent sub-project "primer"' Warning: non-existent sub-project "primer" echo 'Warning: non-existent sub-project "id_mapper"' Warning: non-existent sub-project "id_mapper" make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/algo' echo 'Warning: non-existent sub-project "misc"' Warning: non-existent sub-project "misc" echo 'Warning: non-existent sub-project "sra"' Warning: non-existent sub-project "sra" echo 'Warning: non-existent sub-project "gui"' Warning: non-existent sub-project "gui" /usr/bin/make -C app -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app' echo 'Warning: non-existent sub-project "asn2asn"' Warning: non-existent sub-project "asn2asn" echo 'Warning: non-existent sub-project "asn2fasta"' Warning: non-existent sub-project "asn2fasta" echo 'Warning: non-existent sub-project "asn2flat"' Warning: non-existent sub-project "asn2flat" echo 'Warning: non-existent sub-project "asnval"' Warning: non-existent sub-project "asnval" echo 'Warning: non-existent sub-project "id1_fetch"' Warning: non-existent sub-project "id1_fetch" /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' SKIP -- app/blast/blastp SKIP -- app/blast/blastn SKIP -- app/blast/blastx SKIP -- app/blast/tblastn SKIP -- app/blast/tblastx SKIP -- app/blast/psiblast SKIP -- app/blast/rpsblast SKIP -- app/blast/rpstblastn SKIP -- app/blast/blast_formatter SKIP -- app/blast/deltablast SKIP -- app/blast/seedtop make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blast' echo 'Warning: non-existent sub-project "convert_seq"' Warning: non-existent sub-project "convert_seq" echo 'Warning: non-existent sub-project "nmer_repeats"' Warning: non-existent sub-project "nmer_repeats" echo 'Warning: non-existent sub-project "objmgr"' Warning: non-existent sub-project "objmgr" echo 'Warning: non-existent sub-project "gi2taxid"' Warning: non-existent sub-project "gi2taxid" echo 'Warning: non-existent sub-project "netschedule"' Warning: non-existent sub-project "netschedule" echo 'Warning: non-existent sub-project "grid"' Warning: non-existent sub-project "grid" echo 'Warning: non-existent sub-project "netstorage"' Warning: non-existent sub-project "netstorage" echo 'Warning: non-existent sub-project "igblast"' Warning: non-existent sub-project "igblast" /usr/bin/make -C winmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/winmasker' SKIP -- app/winmasker/winmasker make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/winmasker' /usr/bin/make -C dustmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/dustmasker' SKIP -- app/dustmasker/dustmasker make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/dustmasker' /usr/bin/make -C segmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/segmasker' SKIP -- app/segmasker/segmasker make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/segmasker' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcmd SKIP -- app/blastdb/makeblastdb SKIP -- app/blastdb/blastdb_aliastool SKIP -- app/blastdb/blastdbcheck SKIP -- app/blastdb/convert2blastmask SKIP -- app/blastdb/blastdbcp SKIP -- app/blastdb/makeprofiledb make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app/blastdb' echo 'Warning: non-existent sub-project "vecscreen"' Warning: non-existent sub-project "vecscreen" echo 'Warning: non-existent sub-project "agpconvert"' Warning: non-existent sub-project "agpconvert" echo 'Warning: non-existent sub-project "id2_fetch"' Warning: non-existent sub-project "id2_fetch" echo 'Warning: non-existent sub-project "agp_validate"' Warning: non-existent sub-project "agp_validate" echo 'Warning: non-existent sub-project "objextract"' Warning: non-existent sub-project "objextract" echo 'Warning: non-existent sub-project "lds_indexer"' Warning: non-existent sub-project "lds_indexer" echo 'Warning: non-existent sub-project "bdb_env_keeper"' Warning: non-existent sub-project "bdb_env_keeper" echo 'Warning: non-existent sub-project "nw_aligner"' Warning: non-existent sub-project "nw_aligner" echo 'Warning: non-existent sub-project "speedtest"' Warning: non-existent sub-project "speedtest" echo 'Warning: non-existent sub-project "idmapper"' Warning: non-existent sub-project "idmapper" echo 'Warning: non-existent sub-project "formatguess"' Warning: non-existent sub-project "formatguess" echo 'Warning: non-existent sub-project "multireader"' Warning: non-existent sub-project "multireader" echo 'Warning: non-existent sub-project "read_blast_result"' Warning: non-existent sub-project "read_blast_result" echo 'Warning: non-existent sub-project "splign"' Warning: non-existent sub-project "splign" echo 'Warning: non-existent sub-project "hfilter"' Warning: non-existent sub-project "hfilter" echo 'Warning: non-existent sub-project "annotwriter"' Warning: non-existent sub-project "annotwriter" echo 'Warning: non-existent sub-project "compart"' Warning: non-existent sub-project "compart" echo 'Warning: non-existent sub-project "streamtest"' Warning: non-existent sub-project "streamtest" echo 'Warning: non-existent sub-project "lds2_indexer"' Warning: non-existent sub-project "lds2_indexer" echo 'Warning: non-existent sub-project "discrep_report"' Warning: non-existent sub-project "discrep_report" echo 'Warning: non-existent sub-project "biosample_chk"' Warning: non-existent sub-project "biosample_chk" echo 'Warning: non-existent sub-project "gap_stats"' Warning: non-existent sub-project "gap_stats" echo 'Warning: non-existent sub-project "split_cache"' Warning: non-existent sub-project "split_cache" echo 'Warning: non-existent sub-project "wig2table"' Warning: non-existent sub-project "wig2table" echo 'Warning: non-existent sub-project "netcache"' Warning: non-existent sub-project "netcache" echo 'Warning: non-existent sub-project "rmblastn"' Warning: non-existent sub-project "rmblastn" make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build/app' echo 'Warning: non-existent sub-project "sample"' Warning: non-existent sub-project "sample" echo 'Warning: non-existent sub-project "internal"' Warning: non-existent sub-project "internal" make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build' ---------------------------------------------------------------------- Building check script... Done. OK -- [serial/datatool] datatool.sh (real 0.47, user 0.32, sys 0.04) SKP -- [serial/datatool] datatool_xml.sh OK -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test (real 0.02, user 0.01, sys 0.00) Succeeded : 2 Timeout : 0 Failed : 0 Absent : 1 ******** ALL TESTS COMPLETED SUCCESSFULLY ******** make[3]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++/BUILD/build' make[2]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29/c++' c++/BUILD/build/check.sh concat_err cat c++/BUILD/build/check.sh.out_err make[1]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29' /usr/bin/fakeroot debian/rules binary-arch dh binary-arch -Dc++ --with autotools_dev --with quilt dh_testroot -a -O-Dc\+\+ dh_prep -a -O-Dc\+\+ dh_installdirs -a -O-Dc\+\+ debian/rules override_dh_auto_install make[1]: Entering directory '/build/buildd/ncbi-blast+-2.2.29' cp c++/BUILD/lib/*.so debian/ncbi-blast+/usr/lib/ncbi-blast+/ cp c++/BUILD/bin/* debian/ncbi-blast+/usr/bin/ make[1]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29' debian/rules override_dh_install make[1]: Entering directory '/build/buildd/ncbi-blast+-2.2.29' # dh_install mv debian/ncbi-blast+/usr/bin/rpsblast debian/ncbi-blast+/usr/bin/rpsblast+ mv debian/ncbi-blast+/usr/bin/seedtop debian/ncbi-blast+/usr/bin/seedtop+ mv debian/ncbi-blast+/usr/bin/legacy_blast.pl debian/ncbi-blast+/usr/bin/legacy_blast mv debian/ncbi-blast+/usr/bin/update_blastdb.pl debian/ncbi-blast+/usr/bin/update_blastdb mv debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter.py \ debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter rm -f debian/ncbi-blast+/usr/bin/*test* debian/ncbi-blast+/usr/bin/seqdb_demo \ debian/ncbi-blast+/usr/bin/datatool \ debian/ncbi-blast+/usr/bin/project_tree_builder \ debian/ncbi-blast+/usr/lib/ncbi-blast+/libtest_*.so if test -d debian/ncbi-blast+-legacy/usr/share/ncbi-blast+/bin; then cp debian/legacy/legacy.sh debian/ncbi-blast+-legacy/usr/share/ncbi-blast+/bin/; fi make[1]: Leaving directory '/build/buildd/ncbi-blast+-2.2.29' dh_installdocs -a -O-Dc\+\+ dh_installchangelogs -a -O-Dc\+\+ dh_installexamples -a -O-Dc\+\+ dh_installman -a -O-Dc\+\+ dh_installcatalogs -a -O-Dc\+\+ dh_installcron -a -O-Dc\+\+ dh_installdebconf -a -O-Dc\+\+ dh_installemacsen -a -O-Dc\+\+ dh_installifupdown -a -O-Dc\+\+ dh_installinfo -a -O-Dc\+\+ dh_installinit -a -O-Dc\+\+ dh_installmenu -a -O-Dc\+\+ dh_installmime -a -O-Dc\+\+ dh_installmodules -a -O-Dc\+\+ dh_installlogcheck -a -O-Dc\+\+ dh_installlogrotate -a -O-Dc\+\+ dh_installpam -a -O-Dc\+\+ dh_installppp -a -O-Dc\+\+ dh_installudev -a -O-Dc\+\+ dh_installwm -a -O-Dc\+\+ dh_installgsettings -a -O-Dc\+\+ dh_bugfiles -a -O-Dc\+\+ dh_ucf -a -O-Dc\+\+ dh_lintian -a -O-Dc\+\+ dh_gconf -a -O-Dc\+\+ dh_icons -a -O-Dc\+\+ dh_perl -a -O-Dc\+\+ dh_usrlocal -a -O-Dc\+\+ dh_link -a -O-Dc\+\+ dh_installxfonts -a -O-Dc\+\+ dh_compress -a -O-Dc\+\+ dh_fixperms -a -O-Dc\+\+ dh_strip -a -O-Dc\+\+ dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform arm64: ncbi-blast+ dh_strip debug symbol extraction: packages to act on: ncbi-blast+ dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 ncbi-blast+ has no unstripped objects, ignoring find: `/build/buildd/ncbi-blast+-2.2.29/debian/ncbi-blast+-dbgsym': No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /build/buildd/ncbi-blast+-2.2.29/debian/ncbi-blast+-dbgsym and no dbgdepends, ignoring dh_makeshlibs -a -O-Dc\+\+ dh_shlibdeps -a -O-Dc\+\+ dh_installdeb -a -O-Dc\+\+ dh_gencontrol -a -O-Dc\+\+ dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a -O-Dc\+\+ dh_builddeb -a -O-Dc\+\+ INFO: pkgstriptranslations version 121 pkgstriptranslations: processing ncbi-blast+ (in debian/ncbi-blast+); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/ncbi-blast+/DEBIAN/control, package ncbi-blast+, directory debian/ncbi-blast+ pkgstripfiles: Truncating usr/share/doc/ncbi-blast+/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package ncbi-blast+ took 0 s dpkg-deb: warning: 'debian/ncbi-blast+/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `ncbi-blast+' in `../ncbi-blast+_2.2.29-3_arm64.deb'. dpkg-genchanges -B -mUbuntu Build Daemon >../ncbi-blast+_2.2.29-3_arm64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build ncbi-blast+-2.2.29 dpkg-buildpackage: binary-only upload (no source included) ****************************************************************************** Build finished at 20140702-0655 chroot-autobuild/build/buildd/ncbi-blast+_2.2.29-3_arm64.deb: new debian package, version 2.0. size 6663238 bytes: control archive=3857 bytes. 1285 bytes, 25 lines control 6259 bytes, 95 lines md5sums Package: ncbi-blast+ Version: 2.2.29-3 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 31511 Depends: ncbi-data, python, perl, libbz2-1.0, libc6 (>= 2.17), libgcc1 (>= 1:4.7), libgomp1 (>= 4.2.1), libpcre3, libstdc++6 (>= 4.6), zlib1g (>= 1:1.2.0) Enhances: t-coffee Section: science Priority: optional Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Description: next generation suite of BLAST sequence search tools The Basic Local Alignment Search Tool (BLAST) is the most widely used sequence similarity tool. There are versions of BLAST that compare protein queries to protein databases, nucleotide queries to nucleotide databases, as well as versions that translate nucleotide queries or databases in all six frames and compare to protein databases or queries. PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting with a protein query, and then uses that PSSM to perform further searches. It is also possible to compare a protein or nucleotide query to a database of PSSM’s. The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as a network service. chroot-autobuild/build/buildd/ncbi-blast+_2.2.29-3_arm64.deb: drwxr-xr-x root/root 0 2014-07-02 06:54 ./ drwxr-xr-x root/root 0 2014-07-02 06:54 ./usr/ drwxr-xr-x root/root 0 2014-07-02 06:54 ./usr/lib/ drwxr-xr-x root/root 0 2014-07-02 06:54 ./usr/lib/ncbi-blast+/ -rw-r--r-- root/root 210824 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libvariation.so -rw-r--r-- root/root 239864 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libtaxon1.so -rw-r--r-- root/root 26496 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libxobjsimple.so -rw-r--r-- root/root 649160 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libxobjutil.so -rw-r--r-- root/root 153480 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libscoremat.so -rw-r--r-- root/root 124808 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libpub.so -rw-r--r-- root/root 14040 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libtables.so -rw-r--r-- root/root 288656 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libentrez2.so -rw-r--r-- root/root 665704 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libxalnmgr.so -rw-r--r-- root/root 682040 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libseqdb.so -rw-r--r-- root/root 883096 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libxutil.so -rw-r--r-- root/root 333704 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libgenome_collection.so -rw-r--r-- root/root 1380096 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libxser.so -rw-r--r-- root/root 1501344 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libxblast.so -rw-r--r-- root/root 22328 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libxalgodustmask.so -rw-r--r-- root/root 55184 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libentrez2cli.so -rw-r--r-- root/root 55192 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libblast_services.so -rw-r--r-- root/root 120712 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libmedline.so -rw-r--r-- root/root 59344 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libxconnext.so -rw-r--r-- root/root 284568 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libxblastformat.so -rw-r--r-- root/root 1534624 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libxobjread.so -rw-r--r-- root/root 67456 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libgene_info.so -rw-r--r-- root/root 604848 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libncbi_xreader.so -rw-r--r-- root/root 67464 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libseqcode.so -rw-r--r-- root/root 71576 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libcomposition_adjustment.so -rw-r--r-- root/root 5211112 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libseq.so -rw-r--r-- root/root 288648 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libid2.so -rw-r--r-- root/root 87944 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libsubmit.so -rw-r--r-- root/root 610600 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libxcgi.so -rw-r--r-- root/root 55248 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libseqmasks_io.so -rw-r--r-- root/root 366848 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libgeneral.so -rw-r--r-- root/root 38544 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libcreaders.so -rw-r--r-- root/root 592136 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libxconnect.so -rw-r--r-- root/root 112528 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libseqset.so -rw-r--r-- root/root 2108416 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libxncbi.so -rw-r--r-- root/root 79848 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libsequtil.so -rw-r--r-- root/root 128968 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libncbi_xloader_blastdb.so -rw-r--r-- root/root 507936 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libblast.so -rw-r--r-- root/root 104320 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libigblast.so -rw-r--r-- root/root 501664 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libxcompress.so -rw-r--r-- root/root 378760 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libid2_split.so -rw-r--r-- root/root 124968 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libncbi_xreader_id1.so -rw-r--r-- root/root 186248 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libxalgoblastdbindex.so -rw-r--r-- root/root 530464 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libblastinput.so -rw-r--r-- root/root 79752 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libblastdb.so -rw-r--r-- root/root 190432 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libncbi_xreader_cache.so -rw-r--r-- root/root 96296 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libncbi_xreader_id2.so -rw-r--r-- root/root 780176 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libalign_format.so -rw-r--r-- root/root 452648 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libxhtml.so -rw-r--r-- root/root 2648464 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libxobjmgr.so -rw-r--r-- root/root 92048 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libblastdb_format.so -rw-r--r-- root/root 280480 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libxalgowinmask.so -rw-r--r-- root/root 272264 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libseqedit.so -rw-r--r-- root/root 206864 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libncbi_xloader_genbank.so -rw-r--r-- root/root 42896 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libxnetblastcli.so -rw-r--r-- root/root 329608 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libseqsplit.so -rw-r--r-- root/root 124816 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libncbi_xloader_blastdb_rmt.so -rw-r--r-- root/root 694200 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libxnetblast.so -rw-r--r-- root/root 14136 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libxalgosegmask.so -rw-r--r-- root/root 96136 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libid1.so -rw-r--r-- root/root 34712 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libxregexp.so -rw-r--r-- root/root 329624 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libbiblio.so -rw-r--r-- root/root 358304 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libwritedb.so -rw-r--r-- root/root 79752 2014-07-02 06:54 ./usr/lib/ncbi-blast+/libblastxml.so drwxr-xr-x root/root 0 2014-07-02 06:54 ./usr/bin/ -rwxr-xr-x root/root 43040 2014-07-02 06:54 ./usr/bin/windowmasker -rwxr-xr-x root/root 38960 2014-07-02 06:54 ./usr/bin/seqdb_perf -rwxr-xr-x root/root 43040 2014-07-02 06:54 ./usr/bin/dustmasker -rwxr-xr-x root/root 190608 2014-07-02 06:54 ./usr/bin/blast_formatter -rwxr-xr-x root/root 129152 2014-07-02 06:54 ./usr/bin/blastdbcheck -rwxr-xr-x root/root 30760 2014-07-02 06:54 ./usr/bin/gene_info_reader -rwxr-xr-x root/root 174216 2014-07-02 06:54 ./usr/bin/makeblastdb -rwxr-xr-x root/root 104688 2014-07-02 06:54 ./usr/bin/blastdbcmd -rwxr-xr-x root/root 43048 2014-07-02 06:54 ./usr/bin/segmasker -rwxr-xr-x root/root 12506 2014-07-02 06:54 ./usr/bin/update_blastdb -rwxr-xr-x root/root 182408 2014-07-02 06:54 ./usr/bin/psiblast -rwxr-xr-x root/root 161928 2014-07-02 06:54 ./usr/bin/blastn -rwxr-xr-x root/root 112736 2014-07-02 06:54 ./usr/bin/makeprofiledb -rwxr-xr-x root/root 161928 2014-07-02 06:54 ./usr/bin/blastx -rwxr-xr-x root/root 161928 2014-07-02 06:54 ./usr/bin/seedtop+ -rwxr-xr-x root/root 63536 2014-07-02 06:54 ./usr/bin/convert2blastmask -rwxr-xr-x root/root 47136 2014-07-02 06:54 ./usr/bin/makembindex -rwxr-xr-x root/root 161928 2014-07-02 06:54 ./usr/bin/rpstblastn -rwxr-xr-x root/root 161928 2014-07-02 06:54 ./usr/bin/blastp -rwxr-xr-x root/root 84104 2014-07-02 06:54 ./usr/bin/blastdb_aliastool -rwxr-xr-x root/root 161928 2014-07-02 06:54 ./usr/bin/rpsblast+ -rwxr-xr-x root/root 51346 2014-07-02 06:54 ./usr/bin/legacy_blast -rwxr-xr-x root/root 170120 2014-07-02 06:54 ./usr/bin/tblastn -rwxr-xr-x root/root 55336 2014-07-02 06:54 ./usr/bin/blastdbcp -rwxr-xr-x root/root 174216 2014-07-02 06:54 ./usr/bin/deltablast -rwxr-xr-x root/root 5950 2014-07-02 06:54 ./usr/bin/windowmasker_2.2.22_adapter -rwxr-xr-x root/root 161928 2014-07-02 06:54 ./usr/bin/tblastx drwxr-xr-x root/root 0 2014-07-02 06:54 ./usr/share/ drwxr-xr-x root/root 0 2014-07-02 06:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-07-02 06:54 ./usr/share/doc/ncbi-blast+/ -rw-r--r-- root/root 11447 2012-05-11 03:26 ./usr/share/doc/ncbi-blast+/copyright -rw-r--r-- root/root 1246 2014-07-02 06:55 ./usr/share/doc/ncbi-blast+/changelog.Debian.gz -rw-r--r-- root/root 504 2012-04-13 22:05 ./usr/share/doc/ncbi-blast+/README.Debian drwxr-xr-x root/root 0 2014-07-02 06:54 ./usr/share/man/ drwxr-xr-x root/root 0 2014-07-02 06:54 ./usr/share/man/man1/ -rw-r--r-- root/root 760 2014-07-02 06:54 ./usr/share/man/man1/ncbi-blast+.1.gz ncbi-blast+_2.2.29-3_arm64.changes: Format: 1.8 Date: Tue, 01 Jul 2014 18:27:46 -0400 Source: ncbi-blast+ Binary: ncbi-blast+ ncbi-blast+-legacy Architecture: arm64 Version: 2.2.29-3 Distribution: utopic-proposed Urgency: medium Maintainer: Ubuntu Build Daemon Changed-By: Aaron M. Ucko Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Closes: 753190 Changes: ncbi-blast+ (2.2.29-3) unstable; urgency=medium . * debian/patches/include_typeinfo: Patch include/corelib/ncbistl.hpp to ensure sufficient coverage; fix typos in patch headers. (Closes: #753190.) * Standards-Version: 3.9.4. (Already compliant.) Checksums-Sha1: 60405a2d86ecbf9d1f1fe98cedbf1d2d63f96d36 6663238 ncbi-blast+_2.2.29-3_arm64.deb Checksums-Sha256: 866ccf9a0773c16299d2444f3b504cacb8a86e8ca10eaa395f77816ad7c6fef3 6663238 ncbi-blast+_2.2.29-3_arm64.deb Files: 640a1c4d2842b853c3680d6828653497 6663238 science optional ncbi-blast+_2.2.29-3_arm64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20140702-0655 Build needed 01:37:17, 308376k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-6148086'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-6148086/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-6148086'] Unmounting chroot for build PACKAGEBUILD-6148086... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-6148086'] Removing build PACKAGEBUILD-6148086