https://launchpad.net/ubuntu/+source/mira/4.9.6-4build5/+build/18801917 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-067 4.4.0-174-generic #204-Ubuntu SMP Wed Jan 29 06:42:38 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_186 python-lpbuildd_186 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 5 Mar 08:14:44 ntpdate[1918]: adjust time server 10.211.37.1 offset 0.020021 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18801917 --image-type chroot /home/buildd/filecache-default/f005b6164729459c78307140747b338a2f357aa2 Creating target for build PACKAGEBUILD-18801917 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18801917 Starting target for build PACKAGEBUILD-18801917 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18801917 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-18801917 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18801917 Updating target for build PACKAGEBUILD-18801917 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [255 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf Packages [934 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [500 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe armhf Packages [8377 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5161 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main armhf Packages [89.5 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [47.6 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf Packages [328 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [180 kB] Fetched 16.3 MB in 10s (1700 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: gcc-10-base libapt-pkg6.0 libctf-nobfd0 libctf0 libffi7 libgcc-s1 libhogweed5 libisl22 libnettle7 libperl5.30 libprocps8 perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils bzip2 cpp-9 debianutils e2fsprogs fdisk findutils g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv grep gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libext2fs2 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpng16-16 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lsb-base mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base procps readline-common sensible-utils systemd systemd-sysv sysvinit-utils ubuntu-keyring util-linux zlib1g 112 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. Need to get 58.6 MB of archives. After this operation, 40.7 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main armhf libc6-dev armhf 2.30-0ubuntu3 [1943 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main armhf libc-dev-bin armhf 2.30-0ubuntu3 [63.6 kB] Get:3 http://ftpmaster.internal/ubuntu focal-proposed/main armhf linux-libc-dev armhf 5.4.0-17.21 [1130 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed/main armhf gcc-10-base armhf 10-20200304-1ubuntu1 [18.7 kB] Get:5 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libgcc-s1 armhf 10-20200304-1ubuntu1 [36.2 kB] Get:6 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libgcc1 armhf 1:10-20200304-1ubuntu1 [36.1 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main armhf libc6 armhf 2.30-0ubuntu3 [2144 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main armhf base-files armhf 11ubuntu2 [59.8 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main armhf debianutils armhf 4.9.1 [84.6 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main armhf bash armhf 5.0-6ubuntu1 [577 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main armhf bsdutils armhf 1:2.34-0.1ubuntu7 [58.3 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main armhf findutils armhf 4.7.0-1ubuntu1 [307 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main armhf grep armhf 3.4-1 [141 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main armhf gzip armhf 1.10-0ubuntu4 [91.1 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main armhf hostname armhf 3.23 [10.4 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main armhf login armhf 1:4.8.1-1ubuntu1 [217 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main armhf libncurses6 armhf 6.2-0ubuntu2 [79.7 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main armhf libtinfo6 armhf 6.2-0ubuntu2 [73.8 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main armhf ncurses-bin armhf 6.2-0ubuntu2 [164 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main armhf libncursesw6 armhf 6.2-0ubuntu2 [106 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main armhf perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main armhf libperl5.30 armhf 5.30.0-9 [3286 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main armhf perl armhf 5.30.0-9 [224 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main armhf perl-base armhf 5.30.0-9 [1408 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main armhf bzip2 armhf 1.0.8-2 [32.4 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main armhf libbz2-1.0 armhf 1.0.8-2 [31.0 kB] Get:27 http://ftpmaster.internal/ubuntu focal-proposed/main armhf zlib1g armhf 1:1.2.11.dfsg-2ubuntu1 [48.7 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main armhf libblkid1 armhf 2.34-0.1ubuntu7 [124 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main armhf libuuid1 armhf 2.34-0.1ubuntu7 [19.7 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main armhf libfdisk1 armhf 2.34-0.1ubuntu7 [163 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main armhf libpcre2-8-0 armhf 10.34-7 [172 kB] Get:32 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libselinux1 armhf 3.0-1build2 [60.1 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main armhf libmount1 armhf 2.34-0.1ubuntu7 [135 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main armhf libsmartcols1 armhf 2.34-0.1ubuntu7 [89.0 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main armhf fdisk armhf 2.34-0.1ubuntu7 [109 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main armhf util-linux armhf 2.34-0.1ubuntu7 [957 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main armhf libdebconfclient0 armhf 0.251ubuntu1 [5592 B] Get:38 http://ftpmaster.internal/ubuntu focal/main armhf base-passwd armhf 3.5.47 [46.4 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main armhf libc-bin armhf 2.30-0ubuntu3 [496 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main armhf ncurses-base all 6.2-0ubuntu2 [18.7 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main armhf lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main armhf sysvinit-utils armhf 2.96-2.1ubuntu1 [19.1 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main armhf libgpg-error0 armhf 1.37-1 [50.0 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main armhf libgcrypt20 armhf 1.8.5-5ubuntu1 [365 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main armhf liblz4-1 armhf 1.9.2-2 [51.7 kB] Get:46 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libstdc++6 armhf 10-20200304-1ubuntu1 [441 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main armhf systemd-sysv armhf 244.3-1ubuntu1 [9372 B] Get:48 http://ftpmaster.internal/ubuntu focal/main armhf libacl1 armhf 2.2.53-5ubuntu1 [15.8 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main armhf libapparmor1 armhf 2.13.3-7ubuntu2 [29.1 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main armhf libaudit-common all 1:2.8.5-2ubuntu6 [3936 B] Get:51 http://ftpmaster.internal/ubuntu focal/main armhf libcap-ng0 armhf 0.7.9-2.1build1 [9688 B] Get:52 http://ftpmaster.internal/ubuntu focal/main armhf libaudit1 armhf 1:2.8.5-2ubuntu6 [35.8 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main armhf libcap2 armhf 1:2.32-1 [14.0 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main armhf libudev1 armhf 244.3-1ubuntu1 [69.5 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main armhf libdevmapper1.02.1 armhf 2:1.02.167-1ubuntu1 [118 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main armhf libjson-c4 armhf 0.13.1+dfsg-7 [25.6 kB] Get:57 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libssl1.1 armhf 1.1.1d-2ubuntu4 [1081 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main armhf libcryptsetup12 armhf 2:2.2.2-3ubuntu2 [163 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main armhf libnettle7 armhf 3.5.1+really3.5.1-2 [126 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main armhf libgmp10 armhf 2:6.2.0+dfsg-4 [193 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main armhf libhogweed5 armhf 3.5.1+really3.5.1-2 [127 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main armhf libffi7 armhf 3.3-3 [16.5 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main armhf libp11-kit0 armhf 0.23.20-1build1 [167 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main armhf libtasn1-6 armhf 4.16.0-2 [33.1 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main armhf libgnutls30 armhf 3.6.11.1-2ubuntu2 [733 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main armhf libip4tc2 armhf 1.8.4-3ubuntu2 [16.8 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main armhf libkmod2 armhf 27-1ubuntu1 [38.3 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main armhf libpam0g armhf 1.3.1-5ubuntu4 [49.6 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main armhf libseccomp2 armhf 2.4.2-2ubuntu3 [32.2 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main armhf mount armhf 2.34-0.1ubuntu7 [108 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main armhf systemd armhf 244.3-1ubuntu1 [3537 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main armhf libsystemd0 armhf 244.3-1ubuntu1 [241 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main armhf libzstd1 armhf 1.4.4+dfsg-3 [207 kB] Get:74 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libapt-pkg6.0 armhf 1.9.12 [750 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main armhf libapt-pkg5.90 armhf 1.9.10 [774 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main armhf gpgv armhf 2.2.17-3ubuntu1 [170 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main armhf ubuntu-keyring all 2020.02.11.1 [22.3 kB] Get:78 http://ftpmaster.internal/ubuntu focal-proposed/main armhf apt armhf 1.9.12 [1241 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main armhf libpam-modules-bin armhf 1.3.1-5ubuntu4 [33.8 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main armhf libpam-modules armhf 1.3.1-5ubuntu4 [232 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main armhf logsave armhf 1.45.5-2ubuntu1 [9568 B] Get:82 http://ftpmaster.internal/ubuntu focal/main armhf libext2fs2 armhf 1.45.5-2ubuntu1 [170 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main armhf e2fsprogs armhf 1.45.5-2ubuntu1 [508 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main armhf libattr1 armhf 1:2.4.48-5 [11.5 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main armhf libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main armhf libsepol1 armhf 3.0-1 [220 kB] Get:87 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libsemanage-common all 3.0-1build2 [9792 B] Get:88 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libsemanage1 armhf 3.0-1build2 [74.1 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main armhf passwd armhf 1:4.8.1-1ubuntu1 [749 kB] Get:90 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libgomp1 armhf 10-20200304-1ubuntu1 [86.5 kB] Get:91 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libatomic1 armhf 10-20200304-1ubuntu1 [7208 B] Get:92 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libasan5 armhf 9.2.1-31ubuntu1 [387 kB] Get:93 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libubsan1 armhf 10-20200304-1ubuntu1 [121 kB] Get:94 http://ftpmaster.internal/ubuntu focal-proposed/main armhf g++-9 armhf 9.2.1-31ubuntu1 [6687 kB] Get:95 http://ftpmaster.internal/ubuntu focal-proposed/main armhf gcc-9 armhf 9.2.1-31ubuntu1 [6546 kB] Get:96 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libstdc++-9-dev armhf 9.2.1-31ubuntu1 [1779 kB] Get:97 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libgcc-9-dev armhf 9.2.1-31ubuntu1 [685 kB] Get:98 http://ftpmaster.internal/ubuntu focal/main armhf libisl22 armhf 0.22.1-1 [460 kB] Get:99 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libcc1-0 armhf 10-20200304-1ubuntu1 [34.5 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main armhf binutils-arm-linux-gnueabihf armhf 2.34-4ubuntu1 [2091 kB] Get:101 http://ftpmaster.internal/ubuntu focal/main armhf libbinutils armhf 2.34-4ubuntu1 [318 kB] Get:102 http://ftpmaster.internal/ubuntu focal/main armhf binutils armhf 2.34-4ubuntu1 [3364 B] Get:103 http://ftpmaster.internal/ubuntu focal/main armhf binutils-common armhf 2.34-4ubuntu1 [207 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main armhf libctf-nobfd0 armhf 2.34-4ubuntu1 [37.8 kB] Get:105 http://ftpmaster.internal/ubuntu focal/main armhf libctf0 armhf 2.34-4ubuntu1 [36.9 kB] Get:106 http://ftpmaster.internal/ubuntu focal-proposed/main armhf cpp-9 armhf 9.2.1-31ubuntu1 [5878 kB] Get:107 http://ftpmaster.internal/ubuntu focal-proposed/main armhf gcc-9-base armhf 9.2.1-31ubuntu1 [19.2 kB] Get:108 http://ftpmaster.internal/ubuntu focal/main armhf libcom-err2 armhf 1.45.5-2ubuntu1 [8556 B] Get:109 http://ftpmaster.internal/ubuntu focal/main armhf libss2 armhf 1.45.5-2ubuntu1 [9400 B] Get:110 http://ftpmaster.internal/ubuntu focal/main armhf mawk armhf 1.3.4.20200120-2 [85.1 kB] Get:111 http://ftpmaster.internal/ubuntu focal/main armhf libprocps8 armhf 2:3.3.16-1ubuntu2 [29.9 kB] Get:112 http://ftpmaster.internal/ubuntu focal/main armhf procps armhf 2:3.3.16-1ubuntu2 [222 kB] Get:113 http://ftpmaster.internal/ubuntu focal/main armhf sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:114 http://ftpmaster.internal/ubuntu focal/main armhf readline-common all 8.0-4 [53.5 kB] Get:115 http://ftpmaster.internal/ubuntu focal/main armhf libreadline8 armhf 8.0-4 [109 kB] Get:116 http://ftpmaster.internal/ubuntu focal/main armhf libsqlite3-0 armhf 3.31.1-3 [467 kB] Get:117 http://ftpmaster.internal/ubuntu focal-proposed/main armhf openssl armhf 1.1.1d-2ubuntu4 [597 kB] Get:118 http://ftpmaster.internal/ubuntu focal/main armhf libpng16-16 armhf 1.6.37-2 [162 kB] Get:119 http://ftpmaster.internal/ubuntu focal/main armhf libassuan0 armhf 2.5.3-7ubuntu2 [29.1 kB] Get:120 http://ftpmaster.internal/ubuntu focal/main armhf gpg armhf 2.2.17-3ubuntu1 [421 kB] Get:121 http://ftpmaster.internal/ubuntu focal/main armhf gpgconf armhf 2.2.17-3ubuntu1 [107 kB] Get:122 http://ftpmaster.internal/ubuntu focal/main armhf gpg-agent armhf 2.2.17-3ubuntu1 [195 kB] Get:123 http://ftpmaster.internal/ubuntu focal/main armhf liblockfile-bin armhf 1.16-1.1 [10.5 kB] Get:124 http://ftpmaster.internal/ubuntu focal/main armhf liblockfile1 armhf 1.16-1.1 [5620 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 58.6 MB in 5s (12.8 MB/s) (Reading database ... 12487 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.30-0ubuntu3_armhf.deb ... Unpacking libc6-dev:armhf (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../libc-dev-bin_2.30-0ubuntu3_armhf.deb ... Unpacking libc-dev-bin (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../linux-libc-dev_5.4.0-17.21_armhf.deb ... Unpacking linux-libc-dev:armhf (5.4.0-17.21) over (5.3.0-18.19) ... Selecting previously unselected package gcc-10-base:armhf. Preparing to unpack .../gcc-10-base_10-20200304-1ubuntu1_armhf.deb ... Unpacking gcc-10-base:armhf (10-20200304-1ubuntu1) ... Setting up gcc-10-base:armhf (10-20200304-1ubuntu1) ... Selecting previously unselected package libgcc-s1:armhf. (Reading database ... 12497 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10-20200304-1ubuntu1_armhf.deb ... Unpacking libgcc-s1:armhf (10-20200304-1ubuntu1) ... Replacing files in old package libgcc1:armhf (1:9.2.1-9ubuntu2) ... 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Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/update-motd.d/50-motd-news ... Updating /root/.profile to current default. (Reading database ... 12500 files and directories currently installed.) Preparing to unpack .../debianutils_4.9.1_armhf.deb ... Unpacking debianutils (4.9.1) over (4.8.6.3) ... Setting up debianutils (4.9.1) ... (Reading database ... 12500 files and directories currently installed.) Preparing to unpack .../bash_5.0-6ubuntu1_armhf.deb ... Unpacking bash (5.0-6ubuntu1) over (5.0-4ubuntu1) ... Setting up bash (5.0-6ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12500 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.34-0.1ubuntu7_armhf.deb ... Unpacking bsdutils (1:2.34-0.1ubuntu7) over (1:2.34-0.1ubuntu2) ... Setting up bsdutils (1:2.34-0.1ubuntu7) ... 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Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket -> /usr/lib/systemd/user/gpg-agent-extra.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket -> /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket -> /usr/lib/systemd/user/gpg-agent.socket. Setting up systemd (244.3-1ubuntu1) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from KVM UUID. Setting up binutils (2.34-4ubuntu1) ... Setting up libgcc-9-dev:armhf (9.2.1-31ubuntu1) ... Setting up gcc-9 (9.2.1-31ubuntu1) ... Setting up systemd-sysv (244.3-1ubuntu1) ... Setting up libstdc++-9-dev:armhf (9.2.1-31ubuntu1) ... Setting up g++-9 (9.2.1-31ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18801917 armhf focal-proposed -c chroot:build-PACKAGEBUILD-18801917 --arch=armhf --dist=focal-proposed --nolog mira_4.9.6-4build5.dsc Initiating build PACKAGEBUILD-18801917 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-174-generic #204-Ubuntu SMP Wed Jan 29 06:42:38 UTC 2020 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-067.buildd +==============================================================================+ | mira 4.9.6-4build5 (armhf) 05 Mar 2020 08:16 | +==============================================================================+ Package: mira Version: 4.9.6-4build5 Source Version: 4.9.6-4build5 Distribution: focal-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/mira-JgR4XK/mira-4.9.6' with '<>' I: NOTICE: Log filtering will replace 'build/mira-JgR4XK' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18801917/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- mira_4.9.6-4build5.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-wYdA0m/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-wYdA0m/apt_archive ./ InRelease Get:2 copy:/<>/resolver-wYdA0m/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-wYdA0m/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-wYdA0m/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-wYdA0m/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (38.0 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-wYdA0m/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (26.2 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14468 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), autoconf-archive, libbz2-dev, libexpat1-dev, perl, flex, libfl-dev, vim-common, zlib1g-dev, libboost-thread-dev, libboost-regex-dev, libboost-filesystem-dev, libboost-system-dev, libboost-iostreams-dev Filtered Build-Depends: debhelper (>= 11~), autoconf-archive, libbz2-dev, libexpat1-dev, perl, flex, libfl-dev, vim-common, zlib1g-dev, libboost-thread-dev, libboost-regex-dev, libboost-filesystem-dev, libboost-system-dev, libboost-iostreams-dev dpkg-deb: building package 'sbuild-build-depends-mira-dummy' in '/<>/resolver-q0x0Uu/apt_archive/sbuild-build-depends-mira-dummy.deb'. Ign:1 copy:/<>/resolver-q0x0Uu/apt_archive ./ InRelease Get:2 copy:/<>/resolver-q0x0Uu/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-q0x0Uu/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-q0x0Uu/apt_archive ./ Sources [319 B] Get:5 copy:/<>/resolver-q0x0Uu/apt_archive ./ Packages [616 B] Fetched 3054 B in 0s (29.0 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install mira build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file flex gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-atomic1.71-dev libboost-atomic1.71.0 libboost-chrono1.71-dev libboost-chrono1.71.0 libboost-date-time1.71-dev libboost-date-time1.71.0 libboost-filesystem-dev libboost-filesystem1.71-dev libboost-filesystem1.71.0 libboost-iostreams-dev libboost-iostreams1.71-dev libboost-iostreams1.71.0 libboost-regex-dev libboost-regex1.71-dev libboost-regex1.71.0 libboost-serialization1.71-dev libboost-serialization1.71.0 libboost-system-dev libboost-system1.71-dev libboost-system1.71.0 libboost-thread-dev libboost-thread1.71-dev libboost-thread1.71.0 libboost1.71-dev libbsd0 libbz2-dev libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfl-dev libfl2 libglib2.0-0 libicu-dev libicu66 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf vim-common xxd zlib1g-dev Suggested packages: gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make bison flex-doc gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.71-doc libboost-container1.71-dev libboost-context1.71-dev libboost-contract1.71-dev libboost-coroutine1.71-dev libboost-exception1.71-dev libboost-fiber1.71-dev libboost-graph1.71-dev libboost-graph-parallel1.71-dev libboost-locale1.71-dev libboost-log1.71-dev libboost-math1.71-dev libboost-mpi1.71-dev libboost-mpi-python1.71-dev libboost-numpy1.71-dev libboost-program-options1.71-dev libboost-python1.71-dev libboost-random1.71-dev libboost-stacktrace1.71-dev libboost-test1.71-dev libboost-timer1.71-dev libboost-type-erasure1.71-dev libboost-wave1.71-dev libboost1.71-tools-dev libmpfrc++-dev libntl-dev icu-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl vim | vim-gtk3 | vim-athena | vim-nox | vim-tiny The following NEW packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file flex gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-atomic1.71-dev libboost-atomic1.71.0 libboost-chrono1.71-dev libboost-chrono1.71.0 libboost-date-time1.71-dev libboost-date-time1.71.0 libboost-filesystem-dev libboost-filesystem1.71-dev libboost-filesystem1.71.0 libboost-iostreams-dev libboost-iostreams1.71-dev libboost-iostreams1.71.0 libboost-regex-dev libboost-regex1.71-dev libboost-regex1.71.0 libboost-serialization1.71-dev libboost-serialization1.71.0 libboost-system-dev libboost-system1.71-dev libboost-system1.71.0 libboost-thread-dev libboost-thread1.71-dev libboost-thread1.71.0 libboost1.71-dev libbsd0 libbz2-dev libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfl-dev libfl2 libglib2.0-0 libicu-dev libicu66 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-mira-dummy vim-common xxd zlib1g-dev 0 upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 41.2 MB of archives. After this operation, 293 MB of additional disk space will be used. 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focal-proposed/main armhf libboost-iostreams1.71.0 armhf 1.71.0-6ubuntu5 [230 kB] Get:59 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf libboost-iostreams1.71-dev armhf 1.71.0-6ubuntu5 [246 kB] Get:60 http://ftpmaster.internal/ubuntu focal/universe armhf libboost-iostreams-dev armhf 1.71.0.0ubuntu1 [3380 B] Get:61 http://ftpmaster.internal/ubuntu focal/universe armhf libboost-regex-dev armhf 1.71.0.0ubuntu1 [3652 B] Get:62 http://ftpmaster.internal/ubuntu focal/main armhf libboost-system-dev armhf 1.71.0.0ubuntu1 [3536 B] Get:63 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libboost-thread1.71.0 armhf 1.71.0-6ubuntu5 [239 kB] Get:64 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libboost-thread1.71-dev armhf 1.71.0-6ubuntu5 [254 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main armhf libboost-thread-dev armhf 1.71.0.0ubuntu1 [3424 B] Get:66 http://ftpmaster.internal/ubuntu focal/main armhf libbz2-dev armhf 1.0.8-2 [29.3 kB] Get:67 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Setting up debhelper (12.9ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-mira-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-174-generic arm64 (armv7l) Toolchain package versions: binutils_2.34-4ubuntu1 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-31ubuntu1 gcc-9_9.2.1-31ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-9-dev_9.2.1-31ubuntu1 libstdc++6_10-20200304-1ubuntu1 linux-libc-dev_5.4.0-17.21 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.12 autoconf_2.69-11.1 autoconf-archive_20190106-2.1ubuntu1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu2 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-4ubuntu1 binutils-arm-linux-gnueabihf_2.34-4ubuntu1 binutils-common_2.34-4ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu7 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.2.1-31ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-5 e2fsprogs_1.45.5-2ubuntu1 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu7 file_1:5.38-4 findutils_4.7.0-1ubuntu1 flex_2.6.4-6.2 g++_4:9.2.1-3.1ubuntu1 g++-9_9.2.1-31ubuntu1 gcc_4:9.2.1-3.1ubuntu1 gcc-10-base_10-20200304-1ubuntu1 gcc-9_9.2.1-31ubuntu1 gcc-9-base_9.2.1-31ubuntu1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpg_2.2.17-3ubuntu1 gpg-agent_2.2.17-3ubuntu1 gpgconf_2.2.17-3ubuntu1 gpgv_2.2.17-3ubuntu1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-0ubuntu4 hostname_3.23 icu-devtools_66.1~rc-1~ubuntu1 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5ubuntu1 libapparmor1_2.13.3-7ubuntu2 libapt-pkg5.90_1.9.10 libapt-pkg6.0_1.9.12 libarchive-zip-perl_1.67-2 libargon2-1_0~20171227-0.2 libasan5_9.2.1-31ubuntu1 libassuan0_2.5.3-7ubuntu2 libatomic1_10-20200304-1ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbinutils_2.34-4ubuntu1 libblkid1_2.34-0.1ubuntu7 libboost-atomic1.71-dev_1.71.0-6ubuntu5 libboost-atomic1.71.0_1.71.0-6ubuntu5 libboost-chrono1.71-dev_1.71.0-6ubuntu5 libboost-chrono1.71.0_1.71.0-6ubuntu5 libboost-date-time1.71-dev_1.71.0-6ubuntu5 libboost-date-time1.71.0_1.71.0-6ubuntu5 libboost-filesystem-dev_1.71.0.0ubuntu1 libboost-filesystem1.71-dev_1.71.0-6ubuntu5 libboost-filesystem1.71.0_1.71.0-6ubuntu5 libboost-iostreams-dev_1.71.0.0ubuntu1 libboost-iostreams1.71-dev_1.71.0-6ubuntu5 libboost-iostreams1.71.0_1.71.0-6ubuntu5 libboost-regex-dev_1.71.0.0ubuntu1 libboost-regex1.71-dev_1.71.0-6ubuntu5 libboost-regex1.71.0_1.71.0-6ubuntu5 libboost-serialization1.71-dev_1.71.0-6ubuntu5 libboost-serialization1.71.0_1.71.0-6ubuntu5 libboost-system-dev_1.71.0.0ubuntu1 libboost-system1.71-dev_1.71.0-6ubuntu5 libboost-system1.71.0_1.71.0-6ubuntu5 libboost-thread-dev_1.71.0.0ubuntu1 libboost-thread1.71-dev_1.71.0-6ubuntu5 libboost-thread1.71.0_1.71.0-6ubuntu5 libboost1.71-dev_1.71.0-6ubuntu5 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libbz2-dev_1.0.8-2 libc-bin_2.30-0ubuntu3 libc-dev-bin_2.30-0ubuntu3 libc6_2.30-0ubuntu3 libc6-dev_2.30-0ubuntu3 libcap-ng0_0.7.9-2.1build1 libcap2_1:2.32-1 libcc1-0_10-20200304-1ubuntu1 libcom-err2_1.45.5-2ubuntu1 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.2-3ubuntu2 libctf-nobfd0_2.34-4ubuntu1 libctf0_2.34-4ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_12.9ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu1 libdpkg-perl_1.19.7ubuntu2 libelf1_0.176-1.1build1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.5-2ubuntu1 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu7 libffi6_3.2.1-9 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libfl-dev_2.6.4-6.2 libfl2_2.6.4-6.2 libgcc-9-dev_9.2.1-31ubuntu1 libgcc-s1_10-20200304-1ubuntu1 libgcc1_1:10-20200304-1ubuntu1 libgcrypt20_1.8.5-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.0-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.11.1-2ubuntu2 libgomp1_10-20200304-1ubuntu1 libgpg-error0_1.37-1 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu-dev_66.1~rc-1~ubuntu1 libicu66_66.1~rc-1~ubuntu1 libidn2-0_2.2.0-2 libip4tc2_1.8.4-3ubuntu2 libisl21_0.21-2 libisl22_0.22.1-1 libjson-c4_0.13.1+dfsg-7 libkmod2_27-1ubuntu1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu7 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.2-0ubuntu2 libncursesw6_6.2-0ubuntu2 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libprocps7_2:3.3.15-2ubuntu3 libprocps8_2:3.3.16-1ubuntu2 libreadline8_8.0-4 libseccomp2_2.4.2-2ubuntu3 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu7 libsqlite3-0_3.31.1-3 libss2_1.45.5-2ubuntu1 libssl1.1_1.1.1d-2ubuntu4 libstdc++-9-dev_9.2.1-31ubuntu1 libstdc++6_10-20200304-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_244.3-1ubuntu1 libtasn1-6_4.16.0-2 libtinfo6_6.2-0ubuntu2 libtool_2.4.6-13 libubsan1_10-20200304-1ubuntu1 libuchardet0_0.0.6-3 libudev1_244.3-1ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu7 libxml2_2.9.10+dfsg-4build1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-17.21 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu1 logsave_1.45.5-2ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1ubuntu7 ncurses-base_6.2-0ubuntu2 ncurses-bin_6.2-0ubuntu2 openssl_1.1.1d-2ubuntu4 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-1ubuntu2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mira-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_244.3-1ubuntu1 systemd-sysv_244.3-1ubuntu1 sysvinit-utils_2.96-2.1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3 ubuntu-keyring_2020.02.11.1 util-linux_2.34-0.1ubuntu7 vim-common_2:8.1.2269-1ubuntu4 xxd_2:8.1.2269-1ubuntu4 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 zlib1g-dev_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Mar 5 08:07:18 2020 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mira_4.9.6-4build5.dsc dpkg-source: info: extracting mira in mira-4.9.6 dpkg-source: info: unpacking mira_4.9.6.orig.tar.bz2 dpkg-source: info: unpacking mira_4.9.6-4build5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch dpkg-source: info: applying sls-rrna-fix dpkg-source: info: applying man-directory Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18801917 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18801917 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18801917 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package mira dpkg-buildpackage: info: source version 4.9.6-4build5 dpkg-buildpackage: info: source distribution focal dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' ( cd doc ; make clean ) || true make[2]: Entering directory '/<>/doc' cd .. && make am--refresh make[3]: Entering directory '/<>' make[3]: *** No rule to make target 'am--refresh'. Stop. make[3]: Leaving directory '/<>' make[2]: *** [Makefile:263: ../config.status] Error 2 make[2]: Leaving directory '/<>/doc' dh_auto_clean || true find * -name Makefile -exec rm '{}' ';' find * -name '*.xxd.H' -exec rm '{}' ';' find * -name '*.par.H' -exec rm '{}' ';' find * -name 'compileinfo.*' -exec rm '{}' ';' make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/mira-assembler.substvars debian/mira-rfam-12s-rrna.substvars debian/mira-doc.substvars debian/files rm -fr -- debian/mira-assembler/ debian/tmp/ debian/mira-rfam-12s-rrna/ debian/mira-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch dh build-arch dh_update_autotools_config -a install -d debian/.debhelper/bucket/files cp -an --reflink=auto config.guess debian/.debhelper/bucket/files/9be3de218833c076786b919dc34aab691611f4cd73316e7705f2673e2c41921b.tmp mv debian/.debhelper/bucket/files/9be3de218833c076786b919dc34aab691611f4cd73316e7705f2673e2c41921b.tmp debian/.debhelper/bucket/files/9be3de218833c076786b919dc34aab691611f4cd73316e7705f2673e2c41921b cp -f /usr/share/misc/config.guess ./config.guess cp -an --reflink=auto config.sub debian/.debhelper/bucket/files/e308ae7f7f524bd790f8d4457c7c0a30f8403ffff4dd0b7d4388daca24275db4.tmp mv debian/.debhelper/bucket/files/e308ae7f7f524bd790f8d4457c7c0a30f8403ffff4dd0b7d4388daca24275db4.tmp debian/.debhelper/bucket/files/e308ae7f7f524bd790f8d4457c7c0a30f8403ffff4dd0b7d4388daca24275db4 cp -f /usr/share/misc/config.sub ./config.sub dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:103: installing './compile' configure.ac:9: installing './missing' doc/docbook/Makefile.am:22: warning: '%'-style pattern rules are a GNU make extension src/caf/Makefile.am: installing './depcomp' src/io/Makefile.am:12: warning: '%'-style pattern rules are a GNU make extension src/mira/Makefile.am:10: warning: '%'-style pattern rules are a GNU make extension find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after dh_auto_configure -a ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '2001' is supported by ustar format... yes checking whether GID '2501' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking for a sed that does not truncate output... /bin/sed checking whether to add --prefix as include path... yes +++++++++++++++++++++++++++++++++++++ systemuname: Linux CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include CXXFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking for OpenMP flag of C compiler... -fopenmp Rescuing C++ flags for OpenMP +++++++++++++++++++++++++++++++++++++ OpenMP CFLAGS: -fopenmp OpenMP CXXFLAGS: -fopenmp +++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ systemuname: Linux CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include CXXFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for int64_t... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking whether long has 64bit... no checking whether enabling 64bit compilation support... no checking build system type... arm-unknown-linux-gnueabihf checking for compiler optimisation settings... -O3 -funroll-loops +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking host system type... arm-unknown-linux-gnueabihf checking how to print strings... printf checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether make sets $(MAKE)... (cached) yes checking whether ln -s works... yes checking for flex... yes checking for flex... flex checking lex output file root... lex.yy checking lex library... -lfl checking whether yytext is a pointer... yes checking for flex++... yes checking for xxd... yes checking for ANSI C header files... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for C/C++ restrict keyword... __restrict checking whether struct tm is in sys/time.h or time.h... time.h checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking whether lstat correctly handles trailing slash... yes checking whether stat accepts an empty string... no checking for strftime... yes checking for floor... no checking for memset... yes checking for pow... no checking for sqrt... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for _LARGEFILE_SOURCE value needed for large files... no checking for isblank... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking for boostlib >= 1.48.0... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -I/usr/include BOOST LDFLAGS: -L/usr/lib/arm-linux-gnueabihf ac_boost_path: ac_boost_lib_path: CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -I/usr/include BOOST LDFLAGS: -L/usr/lib/arm-linux-gnueabihf CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -Wl,-rpath, CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking whether the Boost::Thread library is available... yes checking for exit in -lboost_thread... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/arm-linux-gnueabihf ac_boost_path: ac_boost_lib_path: BOOST_THREAD_LIB: -lboost_thread CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -Wl,-rpath, CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/arm-linux-gnueabihf ac_boost_path: ac_boost_lib_path: BOOST_THREAD_LIB: -lboost_thread CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -Wl,-rpath, CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf LIBS now: -lboost_thread +++++++++++++++++++++++++++++++++++++ checking whether the Boost::Regex library is available... yes checking for exit in -lboost_regex... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/arm-linux-gnueabihf ac_boost_path: ac_boost_lib_path: BOOST_REGEX_LIB: -lboost_regex CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -Wl,-rpath, CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex +++++++++++++++++++++++++++++++++++++ checking whether the Boost::System library is available... yes checking for exit in -lboost_system... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/arm-linux-gnueabihf ac_boost_path: ac_boost_lib_path: BOOST_SYSTEM_LIB: -lboost_system CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -Wl,-rpath, CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex -lboost_system +++++++++++++++++++++++++++++++++++++ checking whether the Boost::Filesystem library is available... yes checking for exit in -lboost_filesystem... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/arm-linux-gnueabihf ac_boost_path: ac_boost_lib_path: BOOST_FILESYSTEM_LIB: -lboost_filesystem CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -Wl,-rpath, CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem +++++++++++++++++++++++++++++++++++++ checking whether the Boost::IOStreams library is available... yes checking for exit in -lboost_iostreams... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/arm-linux-gnueabihf ac_boost_path: ac_boost_lib_path: BOOST_IOSTREAMS_LIB: -lboost_iostreams CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -Wl,-rpath, CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams +++++++++++++++++++++++++++++++++++++ checking for clock_gettime in -lrt... yes +++++++++++++++++++++++++++++++++++++ Need to specifically use rt library LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt +++++++++++++++++++++++++++++++++++++ BOOST is through, yay. +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt +++++++++++++++++++++++++++++++++++++ checking for Expat XML Parser headers in /usr/include... found checking for Expat XML Parser libraries... found checking for Expat XML Parser... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -I/usr/include CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat +++++++++++++++++++++++++++++++++++++ checking if zlib is wanted... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -I/usr/include CXXFLAGS now: -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz +++++++++++++++++++++++++++++++++++++ checking for gzoffset in -lz... yes checking for BZ2_bzRead in -lbz2... yes checking for flex version compatible with MIRA... yes checking for profiling settings... no checking for purify... no checking whether mira should compile in public quiet mode... yes checking whether mira should compile with bound tracking... yes checking whether mira should compile with bug tracking... yes checking whether mira should compile with extended bug tracking... no checking whether mira should compile with function trace... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/other/Makefile config.status: creating src/other/sls/Makefile config.status: creating src/other/sls/mira-createsls/Makefile config.status: creating src/other/sls/mira-createsls/bin/Makefile config.status: creating src/stdinc/Makefile config.status: creating src/debuggersupport/Makefile config.status: creating src/memorc/Makefile config.status: creating src/errorhandling/Makefile config.status: creating src/util/Makefile config.status: creating src/io/Makefile config.status: creating src/mira/Makefile config.status: creating src/caf/Makefile config.status: creating src/support/Makefile config.status: creating src/scripts/Makefile config.status: creating src/modules/Makefile config.status: creating src/version/Makefile config.status: creating src/progs/Makefile config.status: creating man/Makefile config.status: creating doc/Makefile config.status: creating doc/docbook/Makefile config.status: creating distribution/Makefile config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode -------------------------------------------------------------------------------- Summary of MIRA configuration -------------------------------------------------------------------------------- Building version ................................. 4.9.6_linux-gnueabihf_arm_32_dynamic We are building on ............................... Linux CPU supports 64 bit? ............................. no Compiler family .................................. gcc Compiler optimisation flags used ................. -O3 -funroll-loops Building completely static? ...................... no BOOST expected to compile and link? .............. yes Have OpenMP? ..................................... yes Have complete zlib support? ...................... yes Can MIRA be built on this system? ................ yes Using CFLAGS : -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -I/usr/include -Werror=uninitialized -Werror=return-type -fopenmp Using CXXFLAGS : -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp Using LDFLAGS : -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib Using LIBS : -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 Looks good, we do not expect compilation problems. -------------------------------------------------------------------------------- Type 'make' to make the binaries and then 'make install' to install binaries and man pages. Type 'make docinstall' to install extensive documentation as HTML and PDF. debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' # some *.cc files are created by old flex version which breaks the build # see bug #812681 find -name '*.ll' | sed -e 's/[.]ll$/.cc/' | xargs rm dh_auto_build make -j4 make[2]: Entering directory '/<>' make all-recursive make[3]: Entering directory '/<>' Making all in man make[4]: Entering directory '/<>/man' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/man' Making all in src make[4]: Entering directory '/<>/src' Making all in debuggersupport make[5]: Entering directory '/<>/src/debuggersupport' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o dbgsupport.o dbgsupport.C rm -f libmiradebuggersupport.a ar cru libmiradebuggersupport.a dbgsupport.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiradebuggersupport.a make[5]: Leaving directory '/<>/src/debuggersupport' Making all in io make[5]: Entering directory '/<>/src/io' Making .H out of .xxd mira_ft_set.xxd.H Making .H out of .xxd gap4_ft_so_map.xxd.H Reducing so.obo for smaller so.obo.xxd Making .H out of .xxd so2xgap4map.xxd.H Making .H out of .xxd oldso2so.xxd.H Making .H out of .xxd so.obo.xxd.H make all-am make[6]: Entering directory '/<>/src/io' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o annotationmappings.o annotationmappings.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o exp.o exp.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o generalio.o generalio.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o fasta.o fasta.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o fastq-mira.o fastq-mira.C In file included from /usr/include/c++/9/vector:72, from ../../src/util/misc.H:35, from ../../src/errorhandling/errorhandling.H:37, from ../../src/io/fasta.H:39, from fasta.C:27: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::fpos<__mbstate_t>}; _Tp = std::fpos<__mbstate_t>; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o phd.o phd.C /usr/include/c++/9/bits/vector.tcc: In member function ‘void FASTA::loadNextSeq(std::ifstream&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o scf.o scf.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o ncbiinfoxml.o ncbiinfoxml.C /bin/bash ../../ylwrap exp_flexer.ll lex.yy.c exp_flexer.cc -- flex g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o exp_flexer.o exp_flexer.cc rm -f libmirafio.a ar cru libmirafio.a annotationmappings.o exp.o generalio.o fasta.o fastq-mira.o phd.o scf.o ncbiinfoxml.o exp_flexer.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmirafio.a make[6]: Leaving directory '/<>/src/io' make[5]: Leaving directory '/<>/src/io' Making all in stdinc make[5]: Entering directory '/<>/src/stdinc' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/<>/src/stdinc' Making all in errorhandling make[5]: Entering directory '/<>/src/errorhandling' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o errorhandling.o errorhandling.C rm -f libmiraerrorhandling.a ar cru libmiraerrorhandling.a errorhandling.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiraerrorhandling.a make[5]: Leaving directory '/<>/src/errorhandling' Making all in util make[5]: Entering directory '/<>/src/util' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o machineinfo.o machineinfo.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o fileanddisk.o fileanddisk.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o misc.o misc.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o dptools.o dptools.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o fmttext.o fmttext.C rm -f libmiradptools.a ar cru libmiradptools.a dptools.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiradptools.a rm -f libmirafmttext.a ar cru libmirafmttext.a fmttext.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmirafmttext.a fileanddisk.C: In function ‘int64 myGZRead(gzFile_s*&, void*, uint64)’: fileanddisk.C:173:12: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] 173 | strerror_r(errno,buf,1024); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ rm -f libmirautil.a ar cru libmirautil.a machineinfo.o fileanddisk.o misc.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmirautil.a make[5]: Leaving directory '/<>/src/util' Making all in mira make[5]: Entering directory '/<>/src/mira' Making .H out of .xxd adaptorsforclip.454.xxd.H Making .H out of .xxd adaptorsforclip.solexa.xxd.H Making .H out of .xxd adaptorsforclip.iontor.xxd.H Making .H out of .xxd adaptorsregex.solexa.xxd.H Making .H out of .xxd adaptorsregex.iontor.xxd.H Making .H out of .xxd seqforfilter_phix174.solexa.xxd.H make all-am make[6]: Entering directory '/<>/src/mira' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o estassembly.o estassembly.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o hashstats_sdbg.o hashstats_sdbg.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o hashstats.o hashstats.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o skim.o skim.C hashstats.C:1088: warning: "CEBUG" redefined 1088 | #define CEBUG(bla) {cout << bla; cout.flush();} | hashstats.C:83: note: this is the location of the previous definition 83 | #define CEBUG(bla) | hashstats.C:1197: warning: "CEBUG" redefined 1197 | #define CEBUG(bla) | hashstats.C:1088: note: this is the location of the previous definition 1088 | #define CEBUG(bla) {cout << bla; cout.flush();} | g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly.o assembly.C In file included from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/multiway_mergesort.h: In function ‘void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, __gnu_parallel::_ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)]’: /usr/include/c++/9/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 395 | parallel_sort_mwms(_RAIter __begin, _RAIter __end, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/9/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 /usr/include/c++/9/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 /usr/include/c++/9/parallel/multiway_mergesort.h: In function ‘void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, __gnu_parallel::_ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/9/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 /usr/include/c++/9/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 /usr/include/c++/9/parallel/multiway_mergesort.h: In function ‘void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, __gnu_parallel::_ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/9/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 /usr/include/c++/9/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 /usr/include/c++/9/parallel/multiway_mergesort.h: In function ‘void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, __gnu_parallel::_ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/9/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 /usr/include/c++/9/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter::dbgseq_t&, const HashStatistics::dbgseq_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::dbgseq_t&, const HashStatistics::dbgseq_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _Distance = int; _Tp = HashStatistics::dbgseq_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::dbgseq_t&, const HashStatistics::dbgseq_t&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::dbgseq_t&, const HashStatistics::dbgseq_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/sort.h: In member function ‘void HashStatistics::sortDBGSeqsByLenDown() [with TVHASH_T = long long unsigned int]’: /usr/include/c++/9/parallel/sort.h:106:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 105 | parallel_sort_mwms<__stable, true> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 | (__begin, __end, __comp, __parallelism.__get_num_threads()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/sort.h: In member function ‘void HashStatistics::sortDBGSeqsByMHCDown() [with TVHASH_T = long long unsigned int]’: /usr/include/c++/9/parallel/sort.h:106:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 105 | parallel_sort_mwms<__stable, true> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 | (__begin, __end, __comp, __parallelism.__get_num_threads()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Distance = int; _Tp = HashStatistics >::dbgseq_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/sort.h: In member function ‘void HashStatistics::sortDBGSeqsByLenDown() [with TVHASH_T = VLuint<128>]’: /usr/include/c++/9/parallel/sort.h:106:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 105 | parallel_sort_mwms<__stable, true> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 | (__begin, __end, __comp, __parallelism.__get_num_threads()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/sort.h: In member function ‘void HashStatistics::sortDBGSeqsByMHCDown() [with TVHASH_T = VLuint<128>]’: /usr/include/c++/9/parallel/sort.h:106:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 105 | parallel_sort_mwms<__stable, true> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 | (__begin, __end, __comp, __parallelism.__get_num_threads()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Distance = int; _Tp = HashStatistics >::dbgseq_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/sort.h: In member function ‘void HashStatistics::sortDBGSeqsByLenDown() [with TVHASH_T = VLuint<256>]’: /usr/include/c++/9/parallel/sort.h:106:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 105 | parallel_sort_mwms<__stable, true> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 | (__begin, __end, __comp, __parallelism.__get_num_threads()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/sort.h: In member function ‘void HashStatistics::sortDBGSeqsByMHCDown() [with TVHASH_T = VLuint<256>]’: /usr/include/c++/9/parallel/sort.h:106:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 105 | parallel_sort_mwms<__stable, true> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 | (__begin, __end, __comp, __parallelism.__get_num_threads()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Distance = int; _Tp = HashStatistics >::dbgseq_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/sort.h: In member function ‘void HashStatistics::sortDBGSeqsByMHCDown() [with TVHASH_T = VLuint<512>]’: /usr/include/c++/9/parallel/sort.h:106:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 105 | parallel_sort_mwms<__stable, true> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 | (__begin, __end, __comp, __parallelism.__get_num_threads()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/sort.h: In member function ‘void HashStatistics::sortDBGSeqsByLenDown() [with TVHASH_T = VLuint<512>]’: /usr/include/c++/9/parallel/sort.h:106:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 105 | parallel_sort_mwms<__stable, true> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 | (__begin, __end, __comp, __parallelism.__get_num_threads()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../../src/util/misc.H:35, from ../../src/errorhandling/errorhandling.H:37, from hashstats_sdbg.C:35: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair::dbgseq_t, int>}; _Tp = std::pair::dbgseq_t, int>; _Alloc = std::allocator::dbgseq_t, int> >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse::dbgseq_t, int, bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ changed in GCC 7.1 128 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic::dbgseq_t, int, bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/parallel/algo.h:57, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/merge.h: In function ‘_OutputIterator __gnu_parallel::__merge_advance_movc(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics::dbgseq_t*; _RAIter2 = HashStatistics::dbgseq_t*; _OutputIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)]’: /usr/include/c++/9/parallel/merge.h:105:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 105 | __merge_advance_movc(_RAIter1& __begin1, _RAIter1 __end1, | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/multiway_mergesort.h:40, from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_3_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, HashStatistics::dbgseq_t*>*, std::vector::dbgseq_t*, HashStatistics::dbgseq_t*>, std::allocator::dbgseq_t*, HashStatistics::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:241:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 241 | multiway_merge_3_variant(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_4_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, HashStatistics::dbgseq_t*>*, std::vector::dbgseq_t*, HashStatistics::dbgseq_t*>, std::allocator::dbgseq_t*, HashStatistics::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:360:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 360 | multiway_merge_4_variant(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../../src/util/misc.H:35, from ../../src/errorhandling/errorhandling.H:37, from hashstats_sdbg.C:35: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair >::dbgseq_t, int>}; _Tp = std::pair >::dbgseq_t, int>; _Alloc = std::allocator >::dbgseq_t, int> >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’} changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 128 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/parallel/algo.h:57, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/merge.h: In function ‘_OutputIterator __gnu_parallel::__merge_advance_movc(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics >::dbgseq_t*; _RAIter2 = HashStatistics >::dbgseq_t*; _OutputIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/9/parallel/merge.h:105:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 105 | __merge_advance_movc(_RAIter1& __begin1, _RAIter1 __end1, | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/multiway_mergesort.h:40, from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_3_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:241:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 241 | multiway_merge_3_variant(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_4_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:360:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 360 | multiway_merge_4_variant(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../../src/util/misc.H:35, from ../../src/errorhandling/errorhandling.H:37, from hashstats_sdbg.C:35: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair >::dbgseq_t, int>}; _Tp = std::pair >::dbgseq_t, int>; _Alloc = std::allocator >::dbgseq_t, int> >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’} changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 128 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/parallel/algo.h:57, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/merge.h: In function ‘_OutputIterator __gnu_parallel::__merge_advance_movc(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics >::dbgseq_t*; _RAIter2 = HashStatistics >::dbgseq_t*; _OutputIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/9/parallel/merge.h:105:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 105 | __merge_advance_movc(_RAIter1& __begin1, _RAIter1 __end1, | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/multiway_mergesort.h:40, from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_3_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:241:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 241 | multiway_merge_3_variant(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_4_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:360:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 360 | multiway_merge_4_variant(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const HashStatistics::hashstat_t&}; _Tp = HashStatistics::hashstat_t; _Alloc = std::allocator::hashstat_t>]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::hashstat_t, std::allocator::hashstat_t> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void HashStatistics::removeDustEndsFixed(uint8, uint32) [with TVHASH_T = long long unsigned int]’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../../src/util/misc.H:35, from ../../src/errorhandling/errorhandling.H:37, from hashstats_sdbg.C:35: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair >::dbgseq_t, int>}; _Tp = std::pair >::dbgseq_t, int>; _Alloc = std::allocator >::dbgseq_t, int> >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’} changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 128 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/parallel/algo.h:57, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/merge.h: In function ‘_OutputIterator __gnu_parallel::__merge_advance_movc(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics >::dbgseq_t*; _RAIter2 = HashStatistics >::dbgseq_t*; _OutputIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/9/parallel/merge.h:105:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 105 | __merge_advance_movc(_RAIter1& __begin1, _RAIter1 __end1, | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/multiway_mergesort.h:40, from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_3_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:241:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 241 | multiway_merge_3_variant(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const HashStatistics >::hashstat_t&}; _Tp = HashStatistics >::hashstat_t; _Alloc = std::allocator >::hashstat_t>]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::hashstat_t, std::allocator >::hashstat_t> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const VLuint<128>&}; _Tp = VLuint<128>; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void HashStatistics::removeDustEndsFixed(uint8, uint32) [with TVHASH_T = VLuint<128>]’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_4_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:360:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 360 | multiway_merge_4_variant(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const HashStatistics >::hashstat_t&}; _Tp = HashStatistics >::hashstat_t; _Alloc = std::allocator >::hashstat_t>]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::hashstat_t, std::allocator >::hashstat_t> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const VLuint<256>&}; _Tp = VLuint<256>; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void HashStatistics::removeDustEndsFixed(uint8, uint32) [with TVHASH_T = VLuint<256>]’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse::dbgseq_t, int, bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::dbgseq_t, int, bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::dbgseq_t, int, bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = std::pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic::dbgseq_t, int, bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::dbgseq_t, int, bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const HashStatistics >::hashstat_t&}; _Tp = HashStatistics >::hashstat_t; _Alloc = std::allocator >::hashstat_t>]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::hashstat_t, std::allocator >::hashstat_t> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const VLuint<512>&}; _Tp = VLuint<512>; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from ../../src/util/misc.H:35, from ../../src/errorhandling/errorhandling.H:37, from hashstats_sdbg.C:35: /usr/include/c++/9/bits/vector.tcc: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::dbgseq_t*, HashStatistics::dbgseq_t*>*, std::vector::dbgseq_t*, HashStatistics::dbgseq_t*>, std::allocator::dbgseq_t*, HashStatistics::dbgseq_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::dbgseq_t**, std::vector::dbgseq_t*, std::allocator::dbgseq_t*> > >; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../../src/util/misc.H:35, from ../../src/errorhandling/errorhandling.H:37, from hashstats_sdbg.C:35: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void HashStatistics::removeDustEndsFixed(uint8, uint32) [with TVHASH_T = VLuint<512>]’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/multiway_mergesort.h:40, from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = __gnu_parallel::_LoserTreePointer::dbgseq_t, bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)>; _RAIterIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, HashStatistics::dbgseq_t*>*, std::vector::dbgseq_t*, HashStatistics::dbgseq_t*>, std::allocator::dbgseq_t*, HashStatistics::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 491 | multiway_merge_loser_tree(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, HashStatistics::dbgseq_t*>*, std::vector::dbgseq_t*, HashStatistics::dbgseq_t*>, std::allocator::dbgseq_t*, HashStatistics::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:920:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 920 | __sequential_multiway_merge(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/algo.h:57, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/merge.h:178:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >’ changed in GCC 7.1 178 | return __merge_advance_movc(__begin1, __end1, __begin2, __end2, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 | __target, __max_length, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 assembly.C: In member function ‘void Assembly::transferContigReadTagsToReadpool(const Contig&, std::__cxx11::list::const_iterator)’: assembly.C:2438:6: note: parameter passing for argument of type ‘const const_iterator’ {aka ‘const std::_List_const_iterator’} changed in GCC 7.1 2438 | void Assembly::transferContigReadTagsToReadpool(const Contig & con, const std::list::const_iterator bbContigI) | ^~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../../src/util/misc.H:35, from ../../src/errorhandling/errorhandling.H:37, from hashstats_sdbg.C:35: /usr/include/c++/9/bits/vector.tcc: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::dbgseq_t**, std::vector >::dbgseq_t*, std::allocator >::dbgseq_t*> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../../src/util/misc.H:35, from ../../src/errorhandling/errorhandling.H:37, from hashstats_sdbg.C:35: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/9/parallel/multiway_mergesort.h: In function ‘void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, __gnu_parallel::_ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _Compare = bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)]’: /usr/include/c++/9/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 395 | parallel_sort_mwms(_RAIter __begin, _RAIter __end, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/9/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 /usr/include/c++/9/parallel/multiway_mergesort.h: In function ‘void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, __gnu_parallel::_ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/9/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 /usr/include/c++/9/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 /usr/include/c++/9/parallel/multiway_mergesort.h: In function ‘void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, __gnu_parallel::_ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/9/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 /usr/include/c++/9/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 /usr/include/c++/9/parallel/multiway_mergesort.h: In function ‘void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, __gnu_parallel::_ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/9/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 /usr/include/c++/9/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/parallel/multiway_mergesort.h:40, from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = __gnu_parallel::_LoserTreePointer >::dbgseq_t, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 491 | multiway_merge_loser_tree(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:920:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 920 | __sequential_multiway_merge(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/algo.h:57, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/merge.h:178:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 178 | return __merge_advance_movc(__begin1, __end1, __begin2, __end2, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 | __target, __max_length, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from ../../src/util/misc.H:35, from ../../src/errorhandling/errorhandling.H:37, from hashstats_sdbg.C:35: /usr/include/c++/9/bits/vector.tcc: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::dbgseq_t**, std::vector >::dbgseq_t*, std::allocator >::dbgseq_t*> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../../src/util/misc.H:35, from ../../src/errorhandling/errorhandling.H:37, from hashstats_sdbg.C:35: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/multiway_mergesort.h:40, from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = __gnu_parallel::_LoserTreePointer >::dbgseq_t, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 491 | multiway_merge_loser_tree(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:920:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 920 | __sequential_multiway_merge(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/algo.h:57, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/merge.h:178:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 178 | return __merge_advance_movc(__begin1, __end1, __begin2, __end2, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 | __target, __max_length, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter::hashstat_t&, const HashStatistics::hashstat_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::hashstat_t&, const HashStatistics::hashstat_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter >::hashstat_t&, const HashStatistics >::hashstat_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::hashstat_t&, const HashStatistics >::hashstat_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter >::hashstat_t&, const HashStatistics >::hashstat_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::hashstat_t&, const HashStatistics >::hashstat_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from ../../src/util/misc.H:35, from ../../src/errorhandling/errorhandling.H:37, from hashstats_sdbg.C:35: /usr/include/c++/9/bits/vector.tcc: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::dbgseq_t**, std::vector >::dbgseq_t*, std::allocator >::dbgseq_t*> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from ../../src/util/stlimprove.H:31, from hashstats_sdbg.C:40: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../../src/util/misc.H:35, from ../../src/errorhandling/errorhandling.H:37, from hashstats_sdbg.C:35: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter >::hashstat_t&, const HashStatistics >::hashstat_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::hashstat_t&, const HashStatistics >::hashstat_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _Distance = int; _Tp = HashStatistics::hashstat_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::hashstat_t&, const HashStatistics::hashstat_t&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::hashstat_t&, const HashStatistics::hashstat_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/9/parallel/sort.h: In member function ‘void HashStatistics::priv_sorthelper(std::vector::hashstat_t>&, uint8*, uint8, const char*, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)) [with TVHASH_T = long long unsigned int]’: /usr/include/c++/9/parallel/sort.h:106:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 105 | parallel_sort_mwms<__stable, true> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 | (__begin, __end, __comp, __parallelism.__get_num_threads()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void HashStatistics::inAAndB(HashStatistics&, HashStatistics&) [with TVHASH_T = long long unsigned int]’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function ‘void HashStatistics::inANotB(HashStatistics&, HashStatistics&) [with TVHASH_T = long long unsigned int]’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function ‘void HashStatistics::prepareStreamAddNextSequence(const void*, uint64, const char*, uint8, bool) [with TVHASH_T = long long unsigned int]’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/multiway_mergesort.h:40, from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = __gnu_parallel::_LoserTreePointer >::dbgseq_t, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 491 | multiway_merge_loser_tree(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:920:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 920 | __sequential_multiway_merge(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/algo.h:57, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats_sdbg.C:40: /usr/include/c++/9/parallel/merge.h:178:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >’ changed in GCC 7.1 178 | return __merge_advance_movc(__begin1, __end1, __begin2, __end2, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 | __target, __max_length, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig.o contig.C In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Distance = int; _Tp = HashStatistics >::hashstat_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::hashstat_t&, const HashStatistics >::hashstat_t&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::hashstat_t&, const HashStatistics >::hashstat_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/9/parallel/sort.h: In member function ‘void HashStatistics::priv_sorthelper(std::vector::hashstat_t>&, uint8*, uint8, const char*, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)) [with TVHASH_T = VLuint<128>]’: /usr/include/c++/9/parallel/sort.h:106:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 105 | parallel_sort_mwms<__stable, true> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 | (__begin, __end, __comp, __parallelism.__get_num_threads()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void HashStatistics::inAAndB(HashStatistics&, HashStatistics&) [with TVHASH_T = VLuint<128>]’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function ‘void HashStatistics::inANotB(HashStatistics&, HashStatistics&) [with TVHASH_T = VLuint<128>]’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function ‘void HashStatistics::prepareStreamAddNextSequence(const void*, uint64, const char*, uint8, bool) [with TVHASH_T = VLuint<128>]’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Distance = int; _Tp = HashStatistics >::hashstat_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::hashstat_t&, const HashStatistics >::hashstat_t&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::hashstat_t&, const HashStatistics >::hashstat_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/9/parallel/sort.h: In member function ‘void HashStatistics::priv_sorthelper(std::vector::hashstat_t>&, uint8*, uint8, const char*, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)) [with TVHASH_T = VLuint<256>]’: /usr/include/c++/9/parallel/sort.h:106:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 105 | parallel_sort_mwms<__stable, true> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 | (__begin, __end, __comp, __parallelism.__get_num_threads()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void HashStatistics::inAAndB(HashStatistics&, HashStatistics&) [with TVHASH_T = VLuint<256>]’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function ‘void HashStatistics::inANotB(HashStatistics&, HashStatistics&) [with TVHASH_T = VLuint<256>]’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function ‘void HashStatistics::prepareStreamAddNextSequence(const void*, uint64, const char*, uint8, bool) [with TVHASH_T = VLuint<256>]’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Distance = int; _Tp = HashStatistics >::hashstat_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::hashstat_t&, const HashStatistics >::hashstat_t&)>]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o read.o read.C In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::hashstat_t&, const HashStatistics >::hashstat_t&)>]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/9/parallel/sort.h: In member function ‘void HashStatistics::priv_sorthelper(std::vector::hashstat_t>&, uint8*, uint8, const char*, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)) [with TVHASH_T = VLuint<512>]’: /usr/include/c++/9/parallel/sort.h:106:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 105 | parallel_sort_mwms<__stable, true> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 | (__begin, __end, __comp, __parallelism.__get_num_threads()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void HashStatistics::inAAndB(HashStatistics&, HashStatistics&) [with TVHASH_T = VLuint<512>]’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function ‘void HashStatistics::inANotB(HashStatistics&, HashStatistics&) [with TVHASH_T = VLuint<512>]’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function ‘void HashStatistics::prepareStreamAddNextSequence(const void*, uint64, const char*, uint8, bool) [with TVHASH_T = VLuint<512>]’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair::hashstat_t, int>}; _Tp = std::pair::hashstat_t, int>; _Alloc = std::allocator::hashstat_t, int> >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse::hashstat_t, int, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ changed in GCC 7.1 128 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic::hashstat_t, int, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/parallel/algo.h:57, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/9/parallel/merge.h: In function ‘_OutputIterator __gnu_parallel::__merge_advance_movc(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics::hashstat_t*; _RAIter2 = HashStatistics::hashstat_t*; _OutputIterator = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)]’: /usr/include/c++/9/parallel/merge.h:105:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 105 | __merge_advance_movc(_RAIter1& __begin1, _RAIter1 __end1, | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/multiway_mergesort.h:40, from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_3_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator::hashstat_t*, HashStatistics::hashstat_t*>*, std::vector::hashstat_t*, HashStatistics::hashstat_t*>, std::allocator::hashstat_t*, HashStatistics::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:241:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 241 | multiway_merge_3_variant(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~ read.C: In member function ‘void Read::dumpAsReadname(std::ostream&)’: read.C:1242:25: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] 1242 | sprintf(buffer, "%x", this) ; | ~^ | | | unsigned int read.C: In member function ‘void Read::dumpAsFASTA(std::ostream&, bool, bool, bool)’: read.C:1273:25: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] 1273 | sprintf(buffer, "%x", this) ; | ~^ | | | unsigned int read.C: In member function ‘void Read::dumpAsFASTQ(std::ostream&, bool, bool, bool)’: read.C:1357:25: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] 1357 | sprintf(buffer, "%x", this) ; | ~^ | | | unsigned int read.C: In member function ‘void Read::dumpAsFASTAQual(std::ostream&, bool, bool, bool)’: read.C:1458:25: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] 1458 | sprintf(buffer, "%x", this) ; | ~^ | | | unsigned int /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_4_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator::hashstat_t*, HashStatistics::hashstat_t*>*, std::vector::hashstat_t*, HashStatistics::hashstat_t*>, std::allocator::hashstat_t*, HashStatistics::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:360:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 360 | multiway_merge_4_variant(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~ read.C: In member function ‘void Read::dumpAsCAF(std::ostream&)’: read.C:1530:25: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] 1530 | sprintf(buffer, "%x", this) ; | ~^ | | | unsigned int read.C: In member function ‘void Read::dumpAsMAF(std::ostream&)’: read.C:1945:25: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] 1945 | sprintf(buffer, "%x", this) ; | ~^ | | | unsigned int In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair >::hashstat_t, int>}; _Tp = std::pair >::hashstat_t, int>; _Alloc = std::allocator >::hashstat_t, int> >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’} changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair >::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 128 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair >::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/parallel/multiway_mergesort.h:40, from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_3_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:241:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 241 | multiway_merge_3_variant(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/pthread/condition_variable.hpp:15, from /usr/include/boost/thread/condition_variable.hpp:16, from /usr/include/boost/thread/condition.hpp:13, from ../../src/mira/skim.H:27, from skim.C:23: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair::vhrap_t, int>}; _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:30, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ changed in GCC 7.1 128 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ changed in GCC 7.1 /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_4_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:360:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 360 | multiway_merge_4_variant(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/pthread/condition_variable.hpp:15, from /usr/include/boost/thread/condition_variable.hpp:16, from /usr/include/boost/thread/condition.hpp:13, from ../../src/mira/skim.H:27, from skim.C:23: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’} changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:30, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 128 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair >::hashstat_t, int>}; _Tp = std::pair >::hashstat_t, int>; _Alloc = std::allocator >::hashstat_t, int> >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’} changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair >::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 128 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair >::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/parallel/multiway_mergesort.h:40, from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_3_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:241:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 241 | multiway_merge_3_variant(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_4_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:360:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 360 | multiway_merge_4_variant(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/pthread/condition_variable.hpp:15, from /usr/include/boost/thread/condition_variable.hpp:16, from /usr/include/boost/thread/condition.hpp:13, from ../../src/mira/skim.H:27, from skim.C:23: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’} changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:30, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 128 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair >::hashstat_t, int>}; _Tp = std::pair >::hashstat_t, int>; _Alloc = std::allocator >::hashstat_t, int> >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’} changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair >::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 128 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair >::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/parallel/multiway_mergesort.h:40, from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_3_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:241:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 241 | multiway_merge_3_variant(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../../src/util/misc.H:35, from ../../src/errorhandling/errorhandling.H:37, from ../../src/mira/read.H:34, from read.C:28: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In static member function ‘static bool Read::staticInitialiser()’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_4_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:360:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 360 | multiway_merge_4_variant(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/pthread/condition_variable.hpp:15, from /usr/include/boost/thread/condition_variable.hpp:16, from /usr/include/boost/thread/condition.hpp:13, from ../../src/mira/skim.H:27, from skim.C:23: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’} changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:30, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 128 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse::hashstat_t, int, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::hashstat_t, int, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::hashstat_t, int, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair >::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair >::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair >::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair >::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair >::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Distance = int; _Tp = std::pair >::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic::hashstat_t, int, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::hashstat_t, int, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:30, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/vector.tcc: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::hashstat_t*, HashStatistics::hashstat_t*>*, std::vector::hashstat_t*, HashStatistics::hashstat_t*>, std::allocator::hashstat_t*, HashStatistics::hashstat_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::hashstat_t**, std::vector::hashstat_t*, std::allocator::hashstat_t*> > >; _Compare = bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:30, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:30, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:30, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:30, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/multiway_mergesort.h:40, from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = __gnu_parallel::_LoserTree::hashstat_t, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)>; _RAIterIterator = __gnu_cxx::__normal_iterator::hashstat_t*, HashStatistics::hashstat_t*>*, std::vector::hashstat_t*, HashStatistics::hashstat_t*>, std::allocator::hashstat_t*, HashStatistics::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 491 | multiway_merge_loser_tree(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:30, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = std::pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:30, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ changed in GCC 7.1 /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator::hashstat_t*, HashStatistics::hashstat_t*>*, std::vector::hashstat_t*, HashStatistics::hashstat_t*>, std::allocator::hashstat_t*, HashStatistics::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:920:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 920 | __sequential_multiway_merge(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/algo.h:57, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/9/parallel/merge.h:178:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >’ changed in GCC 7.1 178 | return __merge_advance_movc(__begin1, __end1, __begin2, __end2, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 | __target, __max_length, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/pthread/condition_variable.hpp:15, from /usr/include/boost/thread/condition_variable.hpp:16, from /usr/include/boost/thread/condition.hpp:13, from ../../src/mira/skim.H:27, from skim.C:23: /usr/include/c++/9/bits/vector.tcc: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::vhrap_t*, HashStatistics::vhrap_t*>*, std::vector::vhrap_t*, HashStatistics::vhrap_t*>, std::allocator::vhrap_t*, HashStatistics::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::vhrap_t**, std::vector::vhrap_t*, std::allocator::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:30, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/pthread/condition_variable.hpp:15, from /usr/include/boost/thread/condition_variable.hpp:16, from /usr/include/boost/thread/condition.hpp:13, from ../../src/mira/skim.H:27, from skim.C:23: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/vector.tcc: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::hashstat_t**, std::vector >::hashstat_t*, std::allocator >::hashstat_t*> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:30, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/multiway_mergesort.h:40, from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = __gnu_parallel::_LoserTreePointer >::hashstat_t, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)>; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 491 | multiway_merge_loser_tree(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/pthread/condition_variable.hpp:15, from /usr/include/boost/thread/condition_variable.hpp:16, from /usr/include/boost/thread/condition.hpp:13, from ../../src/mira/skim.H:27, from skim.C:23: /usr/include/c++/9/bits/vector.tcc: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:30, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/pthread/condition_variable.hpp:15, from /usr/include/boost/thread/condition_variable.hpp:16, from /usr/include/boost/thread/condition.hpp:13, from ../../src/mira/skim.H:27, from skim.C:23: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:920:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 920 | __sequential_multiway_merge(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/vector.tcc: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::hashstat_t**, std::vector >::hashstat_t*, std::allocator >::hashstat_t*> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:30, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/pthread/condition_variable.hpp:15, from /usr/include/boost/thread/condition_variable.hpp:16, from /usr/include/boost/thread/condition.hpp:13, from ../../src/mira/skim.H:27, from skim.C:23: /usr/include/c++/9/bits/vector.tcc: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:30, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/pthread/condition_variable.hpp:15, from /usr/include/boost/thread/condition_variable.hpp:16, from /usr/include/boost/thread/condition.hpp:13, from ../../src/mira/skim.H:27, from skim.C:23: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/multiway_mergesort.h:40, from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = __gnu_parallel::_LoserTreePointer >::hashstat_t, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)>; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 491 | multiway_merge_loser_tree(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:920:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 920 | __sequential_multiway_merge(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/vector.tcc: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::hashstat_t**, std::vector >::hashstat_t*, std::allocator >::hashstat_t*> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/smart_ptr/shared_ptr.hpp:39, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from hashstats.C:24: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:30, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/pthread/condition_variable.hpp:15, from /usr/include/boost/thread/condition_variable.hpp:16, from /usr/include/boost/thread/condition.hpp:13, from ../../src/mira/skim.H:27, from skim.C:23: /usr/include/c++/9/bits/vector.tcc: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/function/detail/prologue.hpp:13, from /usr/include/boost/function.hpp:30, from ../../src/mira/skim.H:25, from skim.C:23: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /usr/include/boost/thread/pthread/thread_data.hpp:26, from /usr/include/boost/thread/pthread/condition_variable.hpp:15, from /usr/include/boost/thread/condition_variable.hpp:16, from /usr/include/boost/thread/condition.hpp:13, from ../../src/mira/skim.H:27, from skim.C:23: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/multiway_mergesort.h:40, from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from hashstats.C:37: /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = __gnu_parallel::_LoserTreePointer >::hashstat_t, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)>; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 491 | multiway_merge_loser_tree(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:920:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >’ changed in GCC 7.1 920 | __sequential_multiway_merge(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_analysis.o contig_analysis.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o ads.o ads.C In file included from /usr/include/c++/9/vector:72, from ../../src/util/misc.H:35, from ../../src/errorhandling/errorhandling.H:37, from ../../src/mira/parameters.H:43, from ads.H:34, from ads.C:37: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from ../../src/util/misc.H:35, from ../../src/errorhandling/errorhandling.H:37, from ../../src/mira/parameters.H:43, from ads.H:34, from ads.C:37: /usr/include/c++/9/bits/stl_vector.h: In static member function ‘static bool AlignedDualSeq::staticInitialiser()’: /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o adsfacts.o adsfacts.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o align.o align.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_info.o assembly_info.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_buildcontigs.o assembly_buildcontigs.C assembly_buildcontigs.C:80: warning: "CEBUG" redefined 80 | #define CEBUG(bla) {cout << bla; cout.flush(); } | assembly_buildcontigs.C:55: note: this is the location of the previous definition 55 | #define CEBUG(bla) | assembly_buildcontigs.C:1251: warning: "CEBUG" redefined 1251 | #define CEBUG(bla) | assembly_buildcontigs.C:80: note: this is the location of the previous definition 80 | #define CEBUG(bla) {cout << bla; cout.flush(); } | assembly_buildcontigs.C:1332: warning: "CEBUG" redefined 1332 | #define CEBUG(bla) {cout << bla; cout.flush(); } | assembly_buildcontigs.C:1251: note: this is the location of the previous definition 1251 | #define CEBUG(bla) | assembly_buildcontigs.C:1485: warning: "CEBUG" redefined 1485 | #define CEBUG(bla) | assembly_buildcontigs.C:1332: note: this is the location of the previous definition 1332 | #define CEBUG(bla) {cout << bla; cout.flush(); } | assembly_buildcontigs.C:1496: warning: "CEBUG" redefined 1496 | #define CEBUG(bla) {cout << bla; cout.flush(); } | assembly_buildcontigs.C:1485: note: this is the location of the previous definition 1485 | #define CEBUG(bla) | assembly_buildcontigs.C:1621: warning: "CEBUG" redefined 1621 | #define CEBUG(bla) | assembly_buildcontigs.C:1496: note: this is the location of the previous definition 1496 | #define CEBUG(bla) {cout << bla; cout.flush(); } | assembly_buildcontigs.C:2304: warning: "VCOUT" redefined 2304 | #define VCOUT(bla) | assembly_buildcontigs.C:2043: note: this is the location of the previous definition 2043 | #define VCOUT(bla) {if(verbose) {cout << bla;} } | g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_io.o assembly_io.C In file included from /usr/include/c++/9/vector:72, from ../../src/mira/hdeque.H:31, from ../../src/mira/contig.H:41, from ../../src/mira/assembly_info.H:33, from assembly_info.C:28: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from ../../src/mira/hdeque.H:31, from ../../src/mira/contig.H:41, from ../../src/mira/assembly_info.H:33, from assembly_info.C:28: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void AssemblyInfo::zeroStats()’: /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from ../../src/mira/hdeque.H:31, from ../../src/mira/contig.H:41, from ../../src/mira/assembly_info.H:33, from assembly_info.C:28: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly_info.C:28: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly_info.C:28: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly_info.C:28: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly_info.C:28: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly_info.C:28: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from ../../src/mira/hdeque.H:31, from ../../src/mira/contig.H:41, from ../../src/mira/assembly_info.H:33, from assembly_info.C:28: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void AssemblyInfo::calcCurrentInfo()’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly_info.C:28: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_misc.o assembly_misc.C assembly_misc.C:1871: warning: "CEBUG" redefined 1871 | #define CEBUG(bla) {cout << bla; cout.flush();} | assembly_misc.C:55: note: this is the location of the previous definition 55 | #define CEBUG(bla) | assembly_misc.C:1905: warning: "CEBUG" redefined 1905 | #define CEBUG(bla) | assembly_misc.C:1871: note: this is the location of the previous definition 1871 | #define CEBUG(bla) {cout << bla; cout.flush();} | g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_output.o assembly_output.C assembly_misc.C: In member function ‘void Assembly::priv_phahelper(const string&, const string&, uint32, bool, int32, std::string, std::string, std::string)’: assembly_misc.C:376:17: warning: use of an operand of type ‘bool’ in ‘operator++’ is deprecated [-Wdeprecated] 376 | countedthisseq++; | ^~ assembly_misc.C: In instantiation of ‘void Assembly::priv_phahelper(const string&, const string&, uint32, bool, int32, std::string, std::string, std::string) [with TVHASH_T = long long unsigned int; std::string = std::__cxx11::basic_string; uint32 = unsigned int; int32 = int]’: assembly_misc.C:471:118: required from here assembly_misc.C:376:17: warning: use of an operand of type ‘bool’ in ‘operator++’ is deprecated [-Wdeprecated] 376 | countedthisseq++; | ~~~~~~~~~~~~~~^~ assembly_misc.C: In instantiation of ‘void Assembly::priv_phahelper(const string&, const string&, uint32, bool, int32, std::string, std::string, std::string) [with TVHASH_T = VLuint<128>; std::string = std::__cxx11::basic_string; uint32 = unsigned int; int32 = int]’: assembly_misc.C:473:119: required from here assembly_misc.C:376:17: warning: use of an operand of type ‘bool’ in ‘operator++’ is deprecated [-Wdeprecated] assembly_misc.C: In instantiation of ‘void Assembly::priv_phahelper(const string&, const string&, uint32, bool, int32, std::string, std::string, std::string) [with TVHASH_T = VLuint<256>; std::string = std::__cxx11::basic_string; uint32 = unsigned int; int32 = int]’: assembly_misc.C:475:119: required from here assembly_misc.C:376:17: warning: use of an operand of type ‘bool’ in ‘operator++’ is deprecated [-Wdeprecated] assembly_misc.C: In instantiation of ‘void Assembly::priv_phahelper(const string&, const string&, uint32, bool, int32, std::string, std::string, std::string) [with TVHASH_T = VLuint<512>; std::string = std::__cxx11::basic_string; uint32 = unsigned int; int32 = int]’: assembly_misc.C:477:119: required from here assembly_misc.C:376:17: warning: use of an operand of type ‘bool’ in ‘operator++’ is deprecated [-Wdeprecated] g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_pbcorrect.o assembly_pbcorrect.C assembly_misc.C: In member function ‘void Assembly::analyseOverlapHashProfile(std::vector&, std::vector::const_iterator, ADSEstimator&)’: assembly_misc.C:1873:6: note: parameter passing for argument of type ‘std::vector::const_iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 1873 | void Assembly::analyseOverlapHashProfile(std::vector & profile, std::vector::const_iterator seI, ADSEstimator & adse) | ^~~~~~~~ assembly_pbcorrect.C:59: warning: "CEBUG" redefined 59 | #define CEBUG(bla) { if(docebug) {cout << bla; cout.flush();}} | assembly_pbcorrect.C:45: note: this is the location of the previous definition 45 | #define CEBUG(bla) | g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_reduceskimhits.o assembly_reduceskimhits.C In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from ../../src/mira/assembly_output.H:32, from assembly_output.C:33: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_algo.h:1879:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1879 | __final_insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1879:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1879:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ assembly_reduceskimhits.C:1111: warning: "CEBUG" redefined 1111 | #define CEBUG(bla) {cout << bla; cout.flush();} | assembly_reduceskimhits.C:878: note: this is the location of the previous definition 878 | #define CEBUG(bla) | assembly_reduceskimhits.C:1151: warning: "CEBUG" redefined 1151 | #define CEBUG(bla) | assembly_reduceskimhits.C:1111: note: this is the location of the previous definition 1111 | #define CEBUG(bla) {cout << bla; cout.flush();} | assembly_reduceskimhits.C:2742: warning: "CEBUG" redefined 2742 | #define CEBUG(bla) {cout << bla; cout.flush();} | assembly_reduceskimhits.C:1151: note: this is the location of the previous definition 1151 | #define CEBUG(bla) | assembly_reduceskimhits.C:2760: warning: "CEBUG" redefined 2760 | #define CEBUG(bla) | assembly_reduceskimhits.C:2742: note: this is the location of the previous definition 2742 | #define CEBUG(bla) {cout << bla; cout.flush();} | assembly_reduceskimhits.C:2764: warning: "CEBUG" redefined 2764 | #define CEBUG(bla) {cout << bla; cout.flush();} | assembly_reduceskimhits.C:2760: note: this is the location of the previous definition 2760 | #define CEBUG(bla) | assembly_reduceskimhits.C:2803: warning: "CEBUG" redefined 2803 | #define CEBUG(bla) | assembly_reduceskimhits.C:2764: note: this is the location of the previous definition 2764 | #define CEBUG(bla) {cout << bla; cout.flush();} | assembly_reduceskimhits.C:2808: warning: "CEBUG" redefined 2808 | #define CEBUG(bla) {cout << bla; cout.flush();} | assembly_reduceskimhits.C:2803: note: this is the location of the previous definition 2803 | #define CEBUG(bla) | assembly_reduceskimhits.C:2887: warning: "CEBUG" redefined 2887 | #define CEBUG(bla) | assembly_reduceskimhits.C:2808: note: this is the location of the previous definition 2808 | #define CEBUG(bla) {cout << bla; cout.flush();} | In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from ../../src/mira/assembly_output.H:32, from assembly_output.C:33: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = codoninfo_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 326 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from ../../src/mira/assembly_output.H:32, from assembly_output.C:33: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1671:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1671 | std::__make_heap(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1671:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1671 | std::__make_heap(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void assout::saveFeatureAnalysis(std::__cxx11::list&, ReadPool&, const string&, const string&, const string&, bool)’: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1970:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1970 | std::__final_insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1970:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1970 | std::__final_insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../../src/mira/hdeque.H:31, from ../../src/mira/contig.H:41, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const skimedges_t&}; _Tp = skimedges_t; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from ../../src/mira/hdeque.H:31, from ../../src/mira/contig.H:41, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/9/bits/stl_vector.h: In member function ‘size_t Assembly::rsh4_loadNormalisedSkimHitBlock(const string&, uint64, int64, int64, int8, int8)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_swalign.o assembly_swalign.C In file included from /usr/include/c++/9/vector:72, from ../../src/mira/hdeque.H:31, from ../../src/mira/contig.H:41, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from assembly_reduceskimhits.C:39: /usr/include/c++/9/parallel/multiway_mergesort.h: In function ‘void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, __gnu_parallel::_ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const skimedges_t&, const skimedges_t&)]’: /usr/include/c++/9/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 395 | parallel_sort_mwms(_RAIter __begin, _RAIter __end, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/9/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_consensus.o contig_consensus.C In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = skimedges_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘skimedges_t’ changed in GCC 9.1 In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/9/bits/stl_heap.h:342:22: note: parameter passing for argument of type ‘_ValueType’ {aka ‘skimedges_t’} changed in GCC 9.1 342 | std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_heap.h:253:25: note: parameter passing for argument of type ‘_ValueType’ {aka ‘skimedges_t’} changed in GCC 9.1 253 | std::__adjust_heap(__first, _DistanceType(0), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 | _DistanceType(__last - __first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 | _GLIBCXX_MOVE(__value), __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from assembly_reduceskimhits.C:39: /usr/include/c++/9/parallel/algo.h: In function ‘void std::__parallel::sort(_RAIter, _RAIter, _Compare, _Parallelism) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const skimedges_t&, const skimedges_t&); _Parallelism = __gnu_parallel::default_parallel_tag]’: /usr/include/c++/9/parallel/algo.h:1633:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1633 | sort(_RAIter __begin, _RAIter __end, _Compare __comp, | ^~~~ /usr/include/c++/9/parallel/algo.h:1633:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from assembly_reduceskimhits.C:39: /usr/include/c++/9/parallel/sort.h:106:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 105 | parallel_sort_mwms<__stable, true> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 | (__begin, __end, __comp, __parallelism.__get_num_threads()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from assembly_reduceskimhits.C:39: /usr/include/c++/9/parallel/algo.h: In member function ‘size_t Assembly::rsh4_getNextNormalisedSkimBlock(std::__cxx11::list&, int64&, int64&)’: /usr/include/c++/9/parallel/algo.h:1736:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1736 | sort(__begin, __end, __comp, __gnu_parallel::default_parallel_tag()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../../src/mira/hdeque.H:31, from ../../src/mira/contig.H:41, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/9/bits/vector.tcc: In member function ‘void Assembly::rsh4_denormaliseSkimHits(const string&, std::__cxx11::list&, std::vector&, std::vector&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_covanalysis.o contig_covanalysis.C /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 128 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic >]’: /usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/parallel/algo.h:57, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from assembly_reduceskimhits.C:39: /usr/include/c++/9/parallel/merge.h: In function ‘_OutputIterator __gnu_parallel::__merge_advance_movc(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = skimedges_t*; _RAIter2 = skimedges_t*; _OutputIterator = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = bool (*)(const skimedges_t&, const skimedges_t&)]’: /usr/include/c++/9/parallel/merge.h:105:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 105 | __merge_advance_movc(_RAIter1& __begin1, _RAIter1 __end1, | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/multiway_mergesort.h:40, from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from assembly_reduceskimhits.C:39: /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_3_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RAIter3 = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = bool (*)(const skimedges_t&, const skimedges_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:241:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 241 | multiway_merge_3_variant(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_4_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RAIter3 = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = bool (*)(const skimedges_t&, const skimedges_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:360:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 360 | multiway_merge_4_variant(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from ../../src/mira/hdeque.H:31, from ../../src/mira/contig.H:41, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/9/bits/vector.tcc: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator > >; _Compare = bool (*)(const skimedges_t&, const skimedges_t&)]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../../src/mira/hdeque.H:31, from ../../src/mira/contig.H:41, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/multiway_mergesort.h:40, from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from assembly_reduceskimhits.C:39: /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = __gnu_parallel::_LoserTreePointer; _RAIterIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RAIter3 = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = bool (*)(const skimedges_t&, const skimedges_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 491 | multiway_merge_loser_tree(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RAIter3 = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = bool (*)(const skimedges_t&, const skimedges_t&)]’: /usr/include/c++/9/parallel/multiway_merge.h:920:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 920 | __sequential_multiway_merge(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/algo.h:57, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from assembly_reduceskimhits.C:39: /usr/include/c++/9/parallel/merge.h:178:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 178 | return __merge_advance_movc(__begin1, __end1, __begin2, __end2, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 | __target, __max_length, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from assembly.H:33, from assembly_reduceskimhits.C:27: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = skimedges_t*; _Distance = int; _Tp = skimedges_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘skimedges_t’ changed in GCC 9.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = skimedges_t*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_heap.h:342:22: note: parameter passing for argument of type ‘_ValueType’ {aka ‘skimedges_t’} changed in GCC 9.1 342 | std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_heap.h:253:25: note: parameter passing for argument of type ‘_ValueType’ {aka ‘skimedges_t’} changed in GCC 9.1 253 | std::__adjust_heap(__first, _DistanceType(0), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 | _DistanceType(__last - __first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 | _GLIBCXX_MOVE(__value), __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = skimedges_t*; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_heap.h:253:25: note: parameter passing for argument of type ‘_ValueType’ {aka ‘skimedges_t’} changed in GCC 9.1 253 | std::__adjust_heap(__first, _DistanceType(0), | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 | _DistanceType(__last - __first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 | _GLIBCXX_MOVE(__value), __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../../src/mira/hdeque.H:31, from ../../src/mira/contig.H:41, from contig_covanalysis.C:26: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from contig_covanalysis.C:26: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_edit.o contig_edit.C In file included from /usr/include/c++/9/vector:72, from ../../src/mira/hdeque.H:31, from ../../src/mira/contig.H:41, from contig_covanalysis.C:26: /usr/include/c++/9/bits/vector.tcc: In member function ‘void Contig::collectCoverage(uint32, uint32, std::vector&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from contig_covanalysis.C:29: /usr/include/c++/9/parallel/multiway_mergesort.h: In function ‘void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, __gnu_parallel::_ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >; _Compare = std::less]’: /usr/include/c++/9/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 395 | parallel_sort_mwms(_RAIter __begin, _RAIter __end, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/9/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from contig_covanalysis.C:26: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from contig_covanalysis.C:26: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from contig_covanalysis.C:26: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from contig_covanalysis.C:26: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from contig_covanalysis.C:29: /usr/include/c++/9/parallel/algo.h: In function ‘void std::__parallel::sort(_RAIter, _RAIter, _Compare, _Parallelism) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = std::less; _Parallelism = __gnu_parallel::default_parallel_tag]’: /usr/include/c++/9/parallel/algo.h:1633:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1633 | sort(_RAIter __begin, _RAIter __end, _Compare __comp, | ^~~~ /usr/include/c++/9/parallel/algo.h:1633:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from contig_covanalysis.C:29: /usr/include/c++/9/parallel/sort.h:106:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 105 | parallel_sort_mwms<__stable, true> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 | (__begin, __end, __comp, __parallelism.__get_num_threads()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from contig_covanalysis.C:26: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In member function ‘void Contig::calcStatsOnContainer(coverageinfo_t&, std::vector&) const’: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from contig_covanalysis.C:29: /usr/include/c++/9/parallel/algo.h:1656:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1656 | sort(__begin, __end, std::less<_ValueType>(), | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1657 | __gnu_parallel::default_parallel_tag()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../../src/mira/hdeque.H:31, from ../../src/mira/contig.H:41, from contig_covanalysis.C:26: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/multiway_mergesort.h:40, from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from contig_covanalysis.C:29: /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_3_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RAIter3 = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = std::less]’: /usr/include/c++/9/parallel/multiway_merge.h:241:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 241 | multiway_merge_3_variant(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_4_variant(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with iterator = __gnu_parallel::_GuardedIterator; _RAIterIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RAIter3 = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = std::less]’: /usr/include/c++/9/parallel/multiway_merge.h:360:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 360 | multiway_merge_4_variant(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from contig_covanalysis.C:26: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic > >]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from contig_covanalysis.C:26: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse > >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic > >]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from contig_covanalysis.C:26: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic > >]’: /usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 78 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic > >]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1920 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1921 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../../src/mira/hdeque.H:31, from ../../src/mira/contig.H:41, from contig_covanalysis.C:26: /usr/include/c++/9/bits/vector.tcc: In function ‘void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator > >; _Compare = std::less]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/utility/swap.hpp:15, from /usr/include/boost/tuple/detail/tuple_basic.hpp:40, from /usr/include/boost/tuple/tuple.hpp:28, from /usr/include/boost/lambda/core.hpp:30, from /usr/include/boost/lambda/bind.hpp:15, from ../../src/mira/readpool.H:36, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from contig_covanalysis.C:26: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../../src/mira/hdeque.H:31, from ../../src/mira/contig.H:41, from contig_covanalysis.C:26: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/parallel/multiway_mergesort.h:40, from /usr/include/c++/9/parallel/sort.h:44, from /usr/include/c++/9/parallel/algo.h:45, from /usr/include/c++/9/parallel/algorithm:37, from ../../src/util/stlimprove.H:33, from contig_covanalysis.C:29: /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = __gnu_parallel::_LoserTree >; _RAIterIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RAIter3 = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = std::less]’: /usr/include/c++/9/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 491 | multiway_merge_loser_tree(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/parallel/multiway_merge.h: In function ‘_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RAIter3 = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = std::less]’: /usr/include/c++/9/parallel/multiway_merge.h:920:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 920 | __sequential_multiway_merge(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_featureinfo.o contig_featureinfo.C contig_featureinfo.C:512: warning: "CEBUGF2" redefined 512 | #define CEBUGF2 | contig_featureinfo.C:473: note: this is the location of the previous definition 473 | #define CEBUGF2(bla) | g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_output.o contig_output.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_pairconsistency.o contig_pairconsistency.C contig_pairconsistency.C:313: warning: "CEBUG" redefined 313 | #define CEBUG(bla) | contig_pairconsistency.C:34: note: this is the location of the previous definition 34 | #define CEBUG(bla) {cout << bla; cout.flush();} | contig_pairconsistency.C:315: warning: "CEBUG" redefined 315 | #define CEBUG(bla) {cout << bla; cout.flush();} | contig_pairconsistency.C:313: note: this is the location of the previous definition 313 | #define CEBUG(bla) | contig_pairconsistency.C:399: warning: "CEBUG" redefined 399 | #define CEBUG(bla) | contig_pairconsistency.C:315: note: this is the location of the previous definition 315 | #define CEBUG(bla) {cout << bla; cout.flush();} | In file included from /usr/include/c++/9/vector:72, from ../../src/mira/hdeque.H:31, from contig.H:41, from contig_pairconsistency.C:26: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from ../../src/mira/hdeque.H:31, from contig.H:41, from contig_pairconsistency.C:26: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void Contig::priv_cprForRGID(ReadGroupLib::ReadGroupID, std::vector&, std::vector&, std::vector&)’: /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o dataprocessing.o dataprocessing.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o dynamic.o dynamic.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o gbf_parse.o gbf_parse.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 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-pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o gff_save.o gff_save.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ 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-DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o multitag.o multitag.C /bin/bash ../../ylwrap parameters_flexer.ll lex.yy.c parameters_flexer.cc -- flex g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ 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-DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o ppathfinder.o ppathfinder.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o preventinitfiasco.o preventinitfiasco.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o readlotstat.o readlotstat.C In file included from /usr/include/c++/9/vector:72, from ../../src/util/misc.H:35, from ../../src/errorhandling/errorhandling.H:37, from ../../src/mira/parameters.H:43, from parameters.C:28: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MIRAParameters&}; _Tp = MIRAParameters; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from ../../src/util/misc.H:35, from ../../src/errorhandling/errorhandling.H:37, from ../../src/mira/parameters.H:43, from parameters.C:28: /usr/include/c++/9/bits/stl_vector.h: In function ‘std::ostream& operator<<(std::ostream&, const MIRAParameters&)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o readpool.o readpool.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o readpool_io.o readpool_io.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o sam_collect.o sam_collect.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o scaffolder.o scaffolder.C scaffolder.C:203: warning: "CEBUG" redefined 203 | #define CEBUG(bla) | scaffolder.C:84: note: this is the location of the previous definition 84 | #define CEBUG(bla) {cout << bla; cout.flush(); } | g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o seqtohash.o seqtohash.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o simplebloomfilter.o simplebloomfilter.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o skim_lowbph.o skim_lowbph.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o warnings.o warnings.C rm -f libmiraestass.a ar cru libmiraestass.a estassembly.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiraestass.a g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o parameters_flexer.o parameters_flexer.cc rm -f libmira.a ar cru libmira.a hashstats_sdbg.o hashstats.o skim.o assembly.o contig.o read.o contig_analysis.o ads.o adsfacts.o align.o assembly_info.o assembly_buildcontigs.o assembly_io.o assembly_misc.o assembly_output.o assembly_pbcorrect.o assembly_reduceskimhits.o assembly_swalign.o contig_consensus.o contig_covanalysis.o contig_edit.o contig_featureinfo.o contig_output.o contig_pairconsistency.o dataprocessing.o dynamic.o gbf_parse.o gff_parse.o gff_save.o maf_parse.o manifest.o multitag.o parameters_flexer.o parameters.o pcrcontainer.o ppathfinder.o preventinitfiasco.o readgrouplib.o readlotstat.o readpool.o readpool_io.o sam_collect.o scaffolder.o seqtohash.o simplebloomfilter.o skim_lowbph.o warnings.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmira.a make[6]: Leaving directory '/<>/src/mira' make[5]: Leaving directory '/<>/src/mira' Making all in caf make[5]: Entering directory '/<>/src/caf' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o caf.o caf.C /bin/bash ../../ylwrap caf_flexer.ll lex.yy.c caf_flexer.cc -- flex g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o caf_flexer.o caf_flexer.cc rm -f libmiracaf.a ar cru libmiracaf.a caf.o caf_flexer.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiracaf.a make[5]: Leaving directory '/<>/src/caf' Making all in memorc make[5]: Entering directory '/<>/src/memorc' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o memorc.o memorc.C memorc.C: In static member function ‘static void MemORC::statistics()’: memorc.C:155:39: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘std::map::size_type’ {aka ‘unsigned int’} [-Wformat=] 155 | printf("Num. memory blocks : %llu\n", MOC_memblocks.size()); | ~~~^ ~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int std::map::size_type {aka unsigned int} | %u memorc.C:156:39: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘std::map::size_type’ {aka ‘unsigned int’} [-Wformat=] 156 | printf("Num. active hot blocks : %llu\n", MOC_hotblocks.size()); | ~~~^ ~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int std::map::size_type {aka unsigned int} | %u memorc.C:157:39: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 157 | printf("Num. pending hot blocks: %llu\n", MOC_hotaidsrequested.size()); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int std::vector::size_type {aka unsigned int} | %u memorc.C:158:39: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 158 | printf("Total mem reqested : %llu\n", MOC_reqmemalloc); | ~~~^ ~~~~~~~~~~~~~~~ | | | | | size_t {aka unsigned int} | long long unsigned int | %u memorc.C:159:39: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 159 | printf("Total mem allocated : %llu (including pads and fences)\n", MOC_totalmemalloc); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | long long unsigned int size_t {aka unsigned int} | %u memorc.C: In static member function ‘static void* MemORC::newMemBlock(size_t)’: memorc.C:225:51: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 225 | printf("Used malloc()\nTried to allocate %llu byte.\nSorry, memory allocation failed. Bailing out.\n", totaln); | ~~~^ ~~~~~~ | | | | long long unsigned int size_t {aka unsigned int} | %u memorc.C: In static member function ‘static void MemORC::deleteMemBlock(void*)’: memorc.C:311:35: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘uint64’ {aka ‘long long unsigned int’} [-Wformat=] 311 | printf("Nearest memblock above (%d):\t",reinterpret_cast(mbI->first)-reinterpret_cast(usraddr)); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int uint64 {aka long long unsigned int} | %lld memorc.C:318:36: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘uint64’ {aka ‘long long unsigned int’} [-Wformat=] 318 | printf("Nearest memblock below (-%d):\t",reinterpret_cast(usraddr)-reinterpret_cast(mbI->first)); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int uint64 {aka long long unsigned int} | %lld memorc.C: In static member function ‘static bool MemORC::checkMemBlock(std::map::iterator)’: memorc.C:500:22: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 500 | printf("Size: %llu\n", mbI->second.size); | ~~~^ ~~~~~~~~~~~~~~~~ | | | | | size_t {aka unsigned int} | long long unsigned int | %u memorc.C: In static member function ‘static void MemORC::printMemBlockInfo(std::map::iterator)’: memorc.C:558:18: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 558 | printf("%p\t%llu\t",mbI->first,mbI->second.size); | ~~~^ ~~~~~~~~~~~~~~~~ | | | | long long unsigned int size_t {aka unsigned int} | %u memorc.C: In static member function ‘static bool MemORC::checkMemBlock(std::map::iterator)’: memorc.C:411:6: note: parameter passing for argument of type ‘std::map::iterator’ {aka ‘std::_Rb_tree_iterator >’} changed in GCC 7.1 411 | bool MemORC::checkMemBlock(mbmap_t::iterator mbI) | ^~~~~~ memorc.C: In static member function ‘static void MemORC::printMemBlockInfo(std::map::iterator)’: memorc.C:553:6: note: parameter passing for argument of type ‘std::map::iterator’ {aka ‘std::_Rb_tree_iterator >’} changed in GCC 7.1 553 | void MemORC::printMemBlockInfo(mbmap_t::iterator mbI) | ^~~~~~ In file included from /usr/include/c++/9/vector:72, from ../../src/memorc/memorc.H:6, from memorc.C:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from ../../src/memorc/memorc.H:6, from memorc.C:1: /usr/include/c++/9/bits/stl_vector.h: In static member function ‘static void MemORC::requestHotAlloicID(uint64)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o main.o main.C rm -f libmemorc.a ar cru libmemorc.a memorc.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmemorc.a /bin/bash ../../libtool --tag=CXX --mode=link g++ -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf/ -L/usr/lib/arm-linux-gnueabihf -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o main main.o -lmiraerrorhandling -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o main main.o -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf/ -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lmiraerrorhandling -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 -fopenmp -pthread make[5]: Leaving directory '/<>/src/memorc' Making all in modules make[5]: Entering directory '/<>/src/modules' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_sigconex.o mod_sigconex.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_scaffold.o mod_scaffold.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_bait.o mod_bait.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_dbgreplay.o mod_dbgreplay.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_diff.o mod_diff.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_mer.o mod_mer.C In file included from /usr/include/c++/9/algorithm:62, from ../../src/mira/parameters.H:36, from ../../src/modules/mod_sigconex.H:34, from mod_sigconex.C:27: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/bits/stl_algo.h:61, from /usr/include/c++/9/algorithm:62, from ../../src/mira/parameters.H:36, from ../../src/modules/mod_sigconex.H:34, from mod_sigconex.C:27: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = scinfo_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from ../../src/mira/parameters.H:36, from ../../src/modules/mod_sigconex.H:34, from mod_sigconex.C:27: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_mira.o mod_mira.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_convert.o mod_convert.C /usr/include/c++/9/bits/stl_algo.h: In member function ‘void MiraSCE::excon(int, char**)’: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_memestim.o mod_memestim.C mod_mira.C: In function ‘void miraMain_extractContigs(int, char**)’: mod_mira.C:414:10: warning: ignoring return value of ‘int chdir(const char*)’, declared with attribute warn_unused_result [-Wunused-result] 414 | chdir("../.."); | ~~~~~^~~~~~~~~ mod_mira.C:439:10: warning: ignoring return value of ‘int chdir(const char*)’, declared with attribute warn_unused_result [-Wunused-result] 439 | chdir("../.."); | ~~~~~^~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_tagsnp.o mod_tagsnp.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o misc.o misc.C rm -f libmiramodules.a ar cru libmiramodules.a mod_sigconex.o mod_scaffold.o mod_bait.o mod_dbgreplay.o mod_diff.o mod_mer.o mod_mira.o mod_convert.o mod_memestim.o mod_tagsnp.o misc.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiramodules.a make[5]: Leaving directory '/<>/src/modules' Making all in support make[5]: Entering directory '/<>/src/support' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/<>/src/support' Making all in scripts make[5]: Entering directory '/<>/src/scripts' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/<>/src/scripts' Making all in version make[5]: Entering directory '/<>/src/version' make all-am make[6]: Entering directory '/<>/src/version' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mversion.o mversion.C rm -f libmiraversion.a ar cru libmiraversion.a mversion.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiraversion.a make[6]: Leaving directory '/<>/src/version' make[5]: Leaving directory '/<>/src/version' Making all in progs make[5]: Entering directory '/<>/src/progs' Making .C out of .xxd compileinfo.itxt make all-am make[6]: Entering directory '/<>/src/progs' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mira.o mira.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o quirks.o quirks.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o miratest.o miratest.C Making .C out of .xxd compileinfo.itxt g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o compileinfo.itxt.xxd.o compileinfo.itxt.xxd.C /bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o miratest miratest.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 /bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o mira mira.o quirks.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o miratest miratest.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 -fopenmp -pthread libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o mira mira.o quirks.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 -fopenmp -pthread make[6]: Leaving directory '/<>/src/progs' make[5]: Leaving directory '/<>/src/progs' Making all in other make[5]: Entering directory '/<>/src/other' Making all in sls make[6]: Entering directory '/<>/src/other/sls' Making all in mira-createsls make[7]: Entering directory '/<>/src/other/sls/mira-createsls' Making all in bin make[8]: Entering directory '/<>/src/other/sls/mira-createsls/bin' make[8]: Nothing to be done for 'all'. make[8]: Leaving directory '/<>/src/other/sls/mira-createsls/bin' make[8]: Entering directory '/<>/src/other/sls/mira-createsls' make[8]: Nothing to be done for 'all-am'. make[8]: Leaving directory '/<>/src/other/sls/mira-createsls' make[7]: Leaving directory '/<>/src/other/sls/mira-createsls' make[7]: Entering directory '/<>/src/other/sls' make[7]: Nothing to be done for 'all-am'. make[7]: Leaving directory '/<>/src/other/sls' make[6]: Leaving directory '/<>/src/other/sls' make[6]: Entering directory '/<>/src/other' make[6]: Nothing to be done for 'all-am'. make[6]: Leaving directory '/<>/src/other' make[5]: Leaving directory '/<>/src/other' make[5]: Entering directory '/<>/src' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/<>/src' make[4]: Leaving directory '/<>/src' make[4]: Entering directory '/<>' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' rm -f debian/mira-assembler.debhelper.log debian/rules override_dh_auto_test-arch make[1]: Entering directory '/<>' make check make[2]: Entering directory '/<>' make check-recursive make[3]: Entering directory '/<>' Making check in man make[4]: Entering directory '/<>/man' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/<>/man' Making check in src make[4]: Entering directory '/<>/src' Making check in debuggersupport make[5]: Entering directory '/<>/src/debuggersupport' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/<>/src/debuggersupport' Making check in io make[5]: Entering directory '/<>/src/io' make check-am make[6]: Entering directory '/<>/src/io' make[6]: Nothing to be done for 'check-am'. make[6]: Leaving directory '/<>/src/io' make[5]: Leaving directory '/<>/src/io' Making check in stdinc make[5]: Entering directory '/<>/src/stdinc' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/<>/src/stdinc' Making check in errorhandling make[5]: Entering directory '/<>/src/errorhandling' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/<>/src/errorhandling' Making check in util make[5]: Entering directory '/<>/src/util' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/<>/src/util' Making check in mira make[5]: Entering directory '/<>/src/mira' make check-am make[6]: Entering directory '/<>/src/mira' make[6]: Nothing to be done for 'check-am'. make[6]: Leaving directory '/<>/src/mira' make[5]: Leaving directory '/<>/src/mira' Making check in caf make[5]: Entering directory '/<>/src/caf' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/<>/src/caf' Making check in memorc make[5]: Entering directory '/<>/src/memorc' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/<>/src/memorc' Making check in modules make[5]: Entering directory '/<>/src/modules' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/<>/src/modules' Making check in support make[5]: Entering directory '/<>/src/support' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/<>/src/support' Making check in scripts make[5]: Entering directory '/<>/src/scripts' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/<>/src/scripts' Making check in version make[5]: Entering directory '/<>/src/version' make check-am make[6]: Entering directory '/<>/src/version' make[6]: Leaving directory '/<>/src/version' make[5]: Leaving directory '/<>/src/version' Making check in progs make[5]: Entering directory '/<>/src/progs' Making .C out of .xxd compileinfo.itxt make check-am make[6]: Entering directory '/<>/src/progs' Making .C out of .xxd compileinfo.itxt g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o compileinfo.itxt.xxd.o compileinfo.itxt.xxd.C /bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o mira mira.o quirks.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o mira mira.o quirks.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 -fopenmp -pthread /bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o miratest miratest.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o miratest miratest.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 -fopenmp -pthread make[6]: Leaving directory '/<>/src/progs' make[5]: Leaving directory '/<>/src/progs' Making check in other make[5]: Entering directory '/<>/src/other' Making check in sls make[6]: Entering directory '/<>/src/other/sls' Making check in mira-createsls make[7]: Entering directory '/<>/src/other/sls/mira-createsls' Making check in bin make[8]: Entering directory '/<>/src/other/sls/mira-createsls/bin' make[8]: Nothing to be done for 'check'. make[8]: Leaving directory '/<>/src/other/sls/mira-createsls/bin' make[8]: Entering directory '/<>/src/other/sls/mira-createsls' make[8]: Nothing to be done for 'check-am'. make[8]: Leaving directory '/<>/src/other/sls/mira-createsls' make[7]: Leaving directory '/<>/src/other/sls/mira-createsls' make[7]: Entering directory '/<>/src/other/sls' make[7]: Nothing to be done for 'check-am'. make[7]: Leaving directory '/<>/src/other/sls' make[6]: Leaving directory '/<>/src/other/sls' make[6]: Entering directory '/<>/src/other' make[6]: Nothing to be done for 'check-am'. make[6]: Leaving directory '/<>/src/other' make[5]: Leaving directory '/<>/src/other' make[5]: Entering directory '/<>/src' make[5]: Nothing to be done for 'check-am'. make[5]: Leaving directory '/<>/src' make[4]: Leaving directory '/<>/src' make[4]: Entering directory '/<>' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a rm -f -- debian/mira-assembler.substvars rm -fr -- debian/.debhelper/generated/mira-assembler/ debian/mira-assembler/ debian/tmp/ dh_installdirs -a install -d debian/mira-assembler/usr/bin debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' make install DESTDIR=/<>/debian/mira-assembler make[2]: Entering directory '/<>' make install-recursive make[3]: Entering directory '/<>' Making install in man make[4]: Entering directory '/<>/man' make[5]: Entering directory '/<>/man' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/mira-assembler/usr/share/man/man1' /usr/bin/install -c -m 644 mirabait.1 miradiff.1 miramer.1 mira.1 miraconvert.1 miramem.1 '/<>/debian/mira-assembler/usr/share/man/man1' make[5]: Leaving directory '/<>/man' make[4]: Leaving directory '/<>/man' Making install in src make[4]: Entering directory '/<>/src' Making install in debuggersupport make[5]: Entering directory '/<>/src/debuggersupport' make[6]: Entering directory '/<>/src/debuggersupport' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/<>/src/debuggersupport' make[5]: Leaving directory '/<>/src/debuggersupport' Making install in io make[5]: Entering directory '/<>/src/io' make install-am make[6]: Entering directory '/<>/src/io' make[7]: Entering directory '/<>/src/io' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/<>/src/io' make[6]: Leaving directory '/<>/src/io' make[5]: Leaving directory '/<>/src/io' Making install in stdinc make[5]: Entering directory '/<>/src/stdinc' make[6]: Entering directory '/<>/src/stdinc' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/<>/src/stdinc' make[5]: Leaving directory '/<>/src/stdinc' Making install in errorhandling make[5]: Entering directory '/<>/src/errorhandling' make[6]: Entering directory '/<>/src/errorhandling' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/<>/src/errorhandling' make[5]: Leaving directory '/<>/src/errorhandling' Making install in util make[5]: Entering directory '/<>/src/util' make[6]: Entering directory '/<>/src/util' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/<>/src/util' make[5]: Leaving directory '/<>/src/util' Making install in mira make[5]: Entering directory '/<>/src/mira' make install-am make[6]: Entering directory '/<>/src/mira' make[7]: Entering directory '/<>/src/mira' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/<>/src/mira' make[6]: Leaving directory '/<>/src/mira' make[5]: Leaving directory '/<>/src/mira' Making install in caf make[5]: Entering directory '/<>/src/caf' make[6]: Entering directory '/<>/src/caf' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/<>/src/caf' make[5]: Leaving directory '/<>/src/caf' Making install in memorc make[5]: Entering directory '/<>/src/memorc' make[6]: Entering directory '/<>/src/memorc' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/<>/src/memorc' make[5]: Leaving directory '/<>/src/memorc' Making install in modules make[5]: Entering directory '/<>/src/modules' make[6]: Entering directory '/<>/src/modules' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/<>/src/modules' make[5]: Leaving directory '/<>/src/modules' Making install in support make[5]: Entering directory '/<>/src/support' make[6]: Entering directory '/<>/src/support' make[6]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/mira-assembler/usr/share/mira/support_3rdparty_tools' /usr/bin/install -c -m 644 consedrc.13.0 consedtaglib.txt GTAGDB README '/<>/debian/mira-assembler/usr/share/mira/support_3rdparty_tools' make[6]: Leaving directory '/<>/src/support' make[5]: Leaving directory '/<>/src/support' Making install in scripts make[5]: Entering directory '/<>/src/scripts' make[6]: Entering directory '/<>/src/scripts' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/<>/src/scripts' make[5]: Leaving directory '/<>/src/scripts' Making install in version make[5]: Entering directory '/<>/src/version' make install-am make[6]: Entering directory '/<>/src/version' make[7]: Entering directory '/<>/src/version' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/<>/src/version' make[6]: Leaving directory '/<>/src/version' make[5]: Leaving directory '/<>/src/version' Making install in progs make[5]: Entering directory '/<>/src/progs' Making .C out of .xxd compileinfo.itxt make install-am make[6]: Entering directory '/<>/src/progs' Making .C out of .xxd compileinfo.itxt g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o compileinfo.itxt.xxd.o compileinfo.itxt.xxd.C /bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o mira mira.o quirks.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o mira mira.o quirks.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 -fopenmp -pthread /bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o miratest miratest.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o miratest miratest.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 -fopenmp -pthread make[7]: Entering directory '/<>/src/progs' Making .C out of .xxd compileinfo.itxt /bin/mkdir -p '/<>/debian/mira-assembler/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c mira '/<>/debian/mira-assembler/usr/bin' libtool: install: /usr/bin/install -c mira /<>/debian/mira-assembler/usr/bin/mira make install-exec-hook make[8]: Entering directory '/<>/src/progs' cd /<>/debian/mira-assembler/usr/bin && \ rm -f miramem && \ ln -s mira miramem && \ rm -f mirabait && \ ln -s mira mirabait &&\ rm -f miraconvert && \ ln -s mira miraconvert && \ rm -f miramer && \ ln -s mira miramer make[8]: Leaving directory '/<>/src/progs' make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/<>/src/progs' make[6]: Leaving directory '/<>/src/progs' make[5]: Leaving directory '/<>/src/progs' Making install in other make[5]: Entering directory '/<>/src/other' Making install in sls make[6]: Entering directory '/<>/src/other/sls' Making install in mira-createsls make[7]: Entering directory '/<>/src/other/sls/mira-createsls' Making install in bin make[8]: Entering directory '/<>/src/other/sls/mira-createsls/bin' make[9]: Entering directory '/<>/src/other/sls/mira-createsls/bin' make[9]: Nothing to be done for 'install-exec-am'. make[9]: Nothing to be done for 'install-data-am'. make[9]: Leaving directory '/<>/src/other/sls/mira-createsls/bin' make[8]: Leaving directory '/<>/src/other/sls/mira-createsls/bin' make[8]: Entering directory '/<>/src/other/sls/mira-createsls' make[9]: Entering directory '/<>/src/other/sls/mira-createsls' make[9]: Nothing to be done for 'install-exec-am'. make[9]: Nothing to be done for 'install-data-am'. make[9]: Leaving directory '/<>/src/other/sls/mira-createsls' make[8]: Leaving directory '/<>/src/other/sls/mira-createsls' make[7]: Leaving directory '/<>/src/other/sls/mira-createsls' make[7]: Entering directory '/<>/src/other/sls' make[8]: Entering directory '/<>/src/other/sls' make[8]: Nothing to be done for 'install-exec-am'. make[8]: Nothing to be done for 'install-data-am'. make[8]: Leaving directory '/<>/src/other/sls' make[7]: Leaving directory '/<>/src/other/sls' make[6]: Leaving directory '/<>/src/other/sls' make[6]: Entering directory '/<>/src/other' make[7]: Entering directory '/<>/src/other' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/<>/src/other' make[6]: Leaving directory '/<>/src/other' make[5]: Leaving directory '/<>/src/other' make[5]: Entering directory '/<>/src' make[6]: Entering directory '/<>/src' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/<>/src' make[5]: Leaving directory '/<>/src' make[4]: Leaving directory '/<>/src' make[4]: Entering directory '/<>' make[5]: Entering directory '/<>' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_install -a install -d debian/.debhelper/generated/mira-assembler install -d debian/.debhelper/generated/mira-rfam-12s-rrna install -d debian/.debhelper/generated/mira-doc dh_installdocs -a install -d debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a ./NEWS debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a ./README debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a ./THANKS debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a ./HELP_WANTED debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a ./debian/README.test debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a ./debian/tests/run-unit-test debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a ./debian/tests/est_assembly.conf debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a ./debian/tests/solexa1.conf debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a ./debian/tests/solexa2.conf debian/mira-assembler/usr/share/doc/mira-assembler cd './debian/tests/test_data//..' && find 'test_data' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /<>/debian/mira-assembler/usr/share/doc/mira-assembler chown -R 0:0 debian/mira-assembler/usr/share/doc chmod -R u\+rw,go=rX debian/mira-assembler/usr/share/doc install -p -m0644 debian/copyright debian/mira-assembler/usr/share/doc/mira-assembler/copyright debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs src/mira/CHANGES.txt install -p -m0644 debian/changelog debian/mira-assembler/usr/share/doc/mira-assembler/changelog.Debian install -p -m0644 src/mira/CHANGES.txt debian/mira-assembler/usr/share/doc/mira-assembler/changelog make[1]: Leaving directory '/<>' dh_installman -a man-recode --to-code UTF-8 --suffix .dh-new debian/mira-assembler/usr/share/man/man1/mira.1 debian/mira-assembler/usr/share/man/man1/mirabait.1 man-recode --to-code UTF-8 --suffix .dh-new debian/mira-assembler/usr/share/man/man1/miraconvert.1 debian/mira-assembler/usr/share/man/man1/miradiff.1 man-recode --to-code UTF-8 --suffix .dh-new debian/mira-assembler/usr/share/man/man1/miramem.1 debian/mira-assembler/usr/share/man/man1/miramer.1 mv debian/mira-assembler/usr/share/man/man1/miramem.1.dh-new debian/mira-assembler/usr/share/man/man1/miramem.1 mv debian/mira-assembler/usr/share/man/man1/miramer.1.dh-new debian/mira-assembler/usr/share/man/man1/miramer.1 chmod 0644 -- debian/mira-assembler/usr/share/man/man1/miramem.1 debian/mira-assembler/usr/share/man/man1/miramer.1 mv debian/mira-assembler/usr/share/man/man1/mira.1.dh-new debian/mira-assembler/usr/share/man/man1/mira.1 mv debian/mira-assembler/usr/share/man/man1/mirabait.1.dh-new debian/mira-assembler/usr/share/man/man1/mirabait.1 chmod 0644 -- debian/mira-assembler/usr/share/man/man1/mira.1 debian/mira-assembler/usr/share/man/man1/mirabait.1 mv debian/mira-assembler/usr/share/man/man1/miraconvert.1.dh-new debian/mira-assembler/usr/share/man/man1/miraconvert.1 mv debian/mira-assembler/usr/share/man/man1/miradiff.1.dh-new debian/mira-assembler/usr/share/man/man1/miradiff.1 chmod 0644 -- debian/mira-assembler/usr/share/man/man1/miraconvert.1 debian/mira-assembler/usr/share/man/man1/miradiff.1 dh_lintian -a install -d debian/mira-assembler/usr/share/lintian/overrides install -p -m0644 debian/mira-assembler.lintian-overrides debian/mira-assembler/usr/share/lintian/overrides/mira-assembler dh_perl -a dh_link -a rm -f debian/mira-assembler/usr/bin/miramer ln -s mira debian/mira-assembler/usr/bin/miramer rm -f debian/mira-assembler/usr/bin/miramem ln -s mira debian/mira-assembler/usr/bin/miramem rm -f debian/mira-assembler/usr/bin/mirabait ln -s mira debian/mira-assembler/usr/bin/mirabait rm -f debian/mira-assembler/usr/bin/miraconvert ln -s mira debian/mira-assembler/usr/bin/miraconvert dh_strip_nondeterminism -a dh_compress -a cd debian/mira-assembler chmod a-x usr/share/doc/mira-assembler/NEWS usr/share/doc/mira-assembler/changelog usr/share/doc/mira-assembler/changelog.Debian usr/share/doc/mira-assembler/test_data/fasta_estset1/tvc_mini.fasta usr/share/doc/mira-assembler/test_data/fasta_estset1/tvc_mini.fasta.qual usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_backbone_in.gbf usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_in.solexa.fasta usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_in.solexa.fasta.qual usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_straindata_in.txt usr/share/man/man1/mira.1 usr/share/man/man1/mirabait.1 usr/share/man/man1/miraconvert.1 usr/share/man/man1/miradiff.1 usr/share/man/man1/miramem.1 usr/share/man/man1/miramer.1 gzip -9nf usr/share/doc/mira-assembler/NEWS usr/share/doc/mira-assembler/changelog usr/share/doc/mira-assembler/changelog.Debian usr/share/doc/mira-assembler/test_data/fasta_estset1/tvc_mini.fasta usr/share/doc/mira-assembler/test_data/fasta_estset1/tvc_mini.fasta.qual usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_backbone_in.gbf usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_in.solexa.fasta usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_in.solexa.fasta.qual usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_straindata_in.txt usr/share/man/man1/mira.1 usr/share/man/man1/mirabait.1 usr/share/man/man1/miraconvert.1 usr/share/man/man1/miradiff.1 usr/share/man/man1/miramem.1 usr/share/man/man1/miramer.1 cd '/<>' dh_fixperms -a find debian/mira-assembler -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/mira-assembler ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/mira-assembler/usr/share/doc -type f -a -true -a ! -regex 'debian/mira-assembler/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/mira-assembler/usr/share/man debian/mira-assembler/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a dh_strip -a install -d debian/.debhelper/mira-assembler/dbgsym-root/usr/lib/debug/.build-id/14 objcopy --only-keep-debug --compress-debug-sections debian/mira-assembler/usr/bin/mira debian/.debhelper/mira-assembler/dbgsym-root/usr/lib/debug/.build-id/14/c5db733f296fbefb88d7bd505530eaea1fdb08.debug chmod 0644 -- debian/.debhelper/mira-assembler/dbgsym-root/usr/lib/debug/.build-id/14/c5db733f296fbefb88d7bd505530eaea1fdb08.debug chown 0:0 -- debian/.debhelper/mira-assembler/dbgsym-root/usr/lib/debug/.build-id/14/c5db733f296fbefb88d7bd505530eaea1fdb08.debug strip --remove-section=.comment --remove-section=.note debian/mira-assembler/usr/bin/mira objcopy --add-gnu-debuglink debian/.debhelper/mira-assembler/dbgsym-root/usr/lib/debug/.build-id/14/c5db733f296fbefb88d7bd505530eaea1fdb08.debug debian/mira-assembler/usr/bin/mira install -d debian/.debhelper/mira-assembler/dbgsym-root/usr/share/doc ln -s mira-assembler debian/.debhelper/mira-assembler/dbgsym-root/usr/share/doc/mira-assembler-dbgsym dh_makeshlibs -a rm -f debian/mira-assembler/DEBIAN/shlibs dh_shlibdeps -a install -d debian/mira-assembler/DEBIAN dpkg-shlibdeps -Tdebian/mira-assembler.substvars debian/mira-assembler/usr/bin/mira dpkg-shlibdeps: warning: debian/mira-assembler/usr/bin/mira contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a dh_gencontrol -a echo misc:Depends= >> debian/mira-assembler.substvars echo misc:Pre-Depends= >> debian/mira-assembler.substvars install -d debian/.debhelper/mira-assembler/dbgsym-root/DEBIAN dpkg-gencontrol -pmira-assembler -ldebian/changelog -Tdebian/mira-assembler.substvars -Pdebian/.debhelper/mira-assembler/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -DPackage=mira-assembler-dbgsym "-DDepends=mira-assembler (= \${binary:Version})" "-DDescription=debug symbols for mira-assembler" -DBuild-Ids=14c5db733f296fbefb88d7bd505530eaea1fdb08 -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/mira-assembler/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/mira-assembler/dbgsym-root/DEBIAN/control dpkg-gencontrol -pmira-assembler -ldebian/changelog -Tdebian/mira-assembler.substvars -Pdebian/mira-assembler -UMulti-Arch chmod 0644 -- debian/mira-assembler/DEBIAN/control chown 0:0 -- debian/mira-assembler/DEBIAN/control dh_md5sums -a cd debian/mira-assembler >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/mira-assembler/DEBIAN/md5sums chown 0:0 -- debian/mira-assembler/DEBIAN/md5sums cd debian/.debhelper/mira-assembler/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/mira-assembler/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/mira-assembler/dbgsym-root/DEBIAN/md5sums rm -f debian/mira-assembler.debhelper.log debian/rules override_dh_builddeb make[1]: Entering directory '/<>' dh_builddeb -- -Z xz dpkg-deb -Z xz --build debian/mira-assembler .. install -d debian/.debhelper/scratch-space/build-mira-assembler dpkg-deb -Z xz --build debian/.debhelper/mira-assembler/dbgsym-root debian/.debhelper/scratch-space/build-mira-assembler INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing mira-assembler-dbgsym (in debian/.debhelper/mira-assembler/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing mira-assembler (in debian/mira-assembler); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/.debhelper/mira-assembler/dbgsym-root/DEBIAN/control, package mira-assembler-dbgsym, directory debian/.debhelper/mira-assembler/dbgsym-root dpkg-deb: building package 'mira-assembler-dbgsym' in 'debian/.debhelper/scratch-space/build-mira-assembler/mira-assembler-dbgsym_4.9.6-4build5_armhf.deb'. pkgstripfiles: processing control file: debian/mira-assembler/DEBIAN/control, package mira-assembler, directory debian/mira-assembler .. removing usr/share/doc/mira-assembler/changelog.gz pkgstripfiles: Truncating usr/share/doc/mira-assembler/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package mira-assembler ... pkgstripfiles: No PNG files. dpkg-deb: building package 'mira-assembler' in '../mira-assembler_4.9.6-4build5_armhf.deb'. Renaming mira-assembler-dbgsym_4.9.6-4build5_armhf.deb to mira-assembler-dbgsym_4.9.6-4build5_armhf.ddeb mv debian/.debhelper/scratch-space/build-mira-assembler/mira-assembler-dbgsym_4.9.6-4build5_armhf.deb ../mira-assembler-dbgsym_4.9.6-4build5_armhf.ddeb make[1]: Leaving directory '/<>' dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../mira_4.9.6-4build5_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200305-0839 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ mira_4.9.6-4build5_armhf.changes: --------------------------------- Format: 1.8 Date: Thu, 05 Mar 2020 08:54:34 +0100 Source: mira Binary: mira-assembler Architecture: armhf Version: 4.9.6-4build5 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: mira-assembler - Whole Genome Shotgun and EST Sequence Assembler Changes: mira (4.9.6-4build5) focal; urgency=medium . * No-change rebuild for icu soname change. Checksums-Sha1: 49af3b08177244f07cf0ca75628b890f9c80ed25 34444848 mira-assembler-dbgsym_4.9.6-4build5_armhf.ddeb 75f9ec2e3f827bb8d9756dcf09f62501082286a7 1966524 mira-assembler_4.9.6-4build5_armhf.deb fdbd7d6fe92d3e16d609634136d6d295367ebad2 6517 mira_4.9.6-4build5_armhf.buildinfo Checksums-Sha256: 6a969cb9a422c7ac04a2dde3208d1985e812494bf03da95c8c0e9f48e3e601bd 34444848 mira-assembler-dbgsym_4.9.6-4build5_armhf.ddeb d440aa965223a463e7b5f2e0ab7fb1c337d4ac737d6f718df6441b8a8aff0b15 1966524 mira-assembler_4.9.6-4build5_armhf.deb 7a0d06fad389ff0e3f61e2f61efceb88698cbd63c1adbc69150074bc784513cf 6517 mira_4.9.6-4build5_armhf.buildinfo Files: 427d2b38ef1fe1077f3cc7e5929d0f4e 34444848 debug optional mira-assembler-dbgsym_4.9.6-4build5_armhf.ddeb c16f0199cc9980d727199a4f46d9e1bf 1966524 science optional mira-assembler_4.9.6-4build5_armhf.deb 5a53450a0e89326c90a458ebb0a1de33 6517 science optional mira_4.9.6-4build5_armhf.buildinfo Original-Maintainer: Debian Med Packaging Team +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ mira-assembler_4.9.6-4build5_armhf.deb -------------------------------------- new debian package, version 2.0. size 1966524 bytes: control archive=2096 bytes. 1700 bytes, 33 lines control 2357 bytes, 29 lines md5sums Package: mira-assembler Source: mira Version: 4.9.6-4build5 Architecture: armhf Maintainer: Ubuntu Developers Installed-Size: 4835 Depends: libboost-filesystem1.71.0, libboost-regex1.71.0-icu66, libboost-thread1.71.0, libc6 (>= 2.29), libexpat1 (>= 2.0.1), libgcc-s1 (>= 3.5), libgomp1 (>= 4.9), libstdc++6 (>= 9), zlib1g (>= 1:1.2.6) Recommends: mira-rfam-12s-rrna Suggests: mira-doc Section: science Priority: optional Homepage: http://chevreux.org/projects_mira.html Description: Whole Genome Shotgun and EST Sequence Assembler The mira genome fragment assembler is a specialised assembler for sequencing projects classified as 'hard' due to high number of similar repeats. For expressed sequence tags (ESTs) transcripts, miraEST is specialised on reconstructing pristine mRNA transcripts while detecting and classifying single nucleotide polymorphisms (SNP) occurring in different variations thereof. . The assembler is routinely used for such various tasks as mutation detection in different cell types, similarity analysis of transcripts between organisms, and pristine assembly of sequences from various sources for oligo design in clinical microarray experiments. . The package provides the following executables: Binaries provided: * mira: for assembly of genome sequences * miramem: estimating memory needed to assemble projects. * mirabait: a "grep" like tool to select reads with kmers up to 256 bases. * miraconvert: is a tool to convert, extract and sometimes recalculate all kinds of data related to sequence assembly files. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2020-03-05 07:54 ./ drwxr-xr-x root/root 0 2020-03-05 07:54 ./usr/ drwxr-xr-x root/root 0 2020-03-05 07:54 ./usr/bin/ -rwxr-xr-x root/root 4805360 2020-03-05 07:54 ./usr/bin/mira lrwxrwxrwx root/root 0 2020-03-05 07:54 ./usr/bin/mirabait -> mira lrwxrwxrwx root/root 0 2020-03-05 07:54 ./usr/bin/miraconvert -> mira lrwxrwxrwx root/root 0 2020-03-05 07:54 ./usr/bin/miramem -> mira lrwxrwxrwx root/root 0 2020-03-05 07:54 ./usr/bin/miramer -> mira drwxr-xr-x root/root 0 2020-03-05 07:54 ./usr/share/ drwxr-xr-x root/root 0 2020-03-05 07:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-03-05 07:54 ./usr/share/doc/mira-assembler/ -rw-r--r-- root/root 1384 2016-05-01 15:18 ./usr/share/doc/mira-assembler/HELP_WANTED -rw-r--r-- root/root 263 2016-05-01 15:18 ./usr/share/doc/mira-assembler/NEWS.gz -rw-r--r-- root/root 2691 2016-05-01 15:18 ./usr/share/doc/mira-assembler/README -rw-r--r-- root/root 180 2018-09-19 20:13 ./usr/share/doc/mira-assembler/README.test -rw-r--r-- root/root 3929 2016-05-01 15:18 ./usr/share/doc/mira-assembler/THANKS -rw-r--r-- root/root 1172 2020-03-05 07:54 ./usr/share/doc/mira-assembler/changelog.Debian.gz -rw-r--r-- root/root 2400 2018-09-19 20:13 ./usr/share/doc/mira-assembler/copyright -rw-r--r-- root/root 135 2018-09-19 20:13 ./usr/share/doc/mira-assembler/est_assembly.conf -rw-r--r-- root/root 415 2018-09-19 20:13 ./usr/share/doc/mira-assembler/run-unit-test -rw-r--r-- root/root 1533 2018-09-19 20:13 ./usr/share/doc/mira-assembler/solexa1.conf -rw-r--r-- root/root 219 2018-09-19 20:13 ./usr/share/doc/mira-assembler/solexa2.conf drwxr-xr-x root/root 0 2018-09-19 20:13 ./usr/share/doc/mira-assembler/test_data/ drwxr-xr-x root/root 0 2020-03-05 07:54 ./usr/share/doc/mira-assembler/test_data/fasta_estset1/ -rw-r--r-- root/root 1159 2018-09-19 20:13 ./usr/share/doc/mira-assembler/test_data/fasta_estset1/tvc_mini.fasta.gz -rw-r--r-- root/root 3572 2018-09-19 20:13 ./usr/share/doc/mira-assembler/test_data/fasta_estset1/tvc_mini.fasta.qual.gz drwxr-xr-x root/root 0 2020-03-05 07:54 ./usr/share/doc/mira-assembler/test_data/solexa_eco_art/ -rw-r--r-- root/root 4982 2018-09-19 20:13 ./usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_backbone_in.gbf.gz -rw-r--r-- root/root 29260 2018-09-19 20:13 ./usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_in.solexa.fasta.gz -rw-r--r-- root/root 14391 2018-09-19 20:13 ./usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_in.solexa.fasta.qual.gz -rw-r--r-- root/root 11879 2018-09-19 20:13 ./usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_straindata_in.txt.gz drwxr-xr-x root/root 0 2020-03-05 07:54 ./usr/share/lintian/ drwxr-xr-x root/root 0 2020-03-05 07:54 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 147 2018-09-19 20:13 ./usr/share/lintian/overrides/mira-assembler drwxr-xr-x root/root 0 2020-03-05 07:54 ./usr/share/man/ drwxr-xr-x root/root 0 2020-03-05 07:54 ./usr/share/man/man1/ -rw-r--r-- root/root 1140 2020-03-05 07:54 ./usr/share/man/man1/mira.1.gz -rw-r--r-- root/root 2649 2020-03-05 07:54 ./usr/share/man/man1/mirabait.1.gz -rw-r--r-- root/root 3577 2020-03-05 07:54 ./usr/share/man/man1/miraconvert.1.gz -rw-r--r-- root/root 568 2020-03-05 07:54 ./usr/share/man/man1/miradiff.1.gz -rw-r--r-- root/root 761 2020-03-05 07:54 ./usr/share/man/man1/miramem.1.gz -rw-r--r-- root/root 566 2020-03-05 07:54 ./usr/share/man/man1/miramer.1.gz drwxr-xr-x root/root 0 2020-03-05 07:54 ./usr/share/mira/ drwxr-xr-x root/root 0 2020-03-05 07:54 ./usr/share/mira/support_3rdparty_tools/ -rw-r--r-- root/root 2571 2020-03-05 07:54 ./usr/share/mira/support_3rdparty_tools/GTAGDB -rw-r--r-- root/root 735 2020-03-05 07:54 ./usr/share/mira/support_3rdparty_tools/README -rw-r--r-- root/root 58 2020-03-05 07:54 ./usr/share/mira/support_3rdparty_tools/consedrc.13.0 -rw-r--r-- root/root 762 2020-03-05 07:54 ./usr/share/mira/support_3rdparty_tools/consedtaglib.txt +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 703920 Build-Time: 1323 Distribution: focal-proposed Host Architecture: armhf Install-Time: 73 Job: mira_4.9.6-4build5.dsc Machine Architecture: arm64 Package: mira Package-Time: 1405 Source-Version: 4.9.6-4build5 Space: 703920 Status: successful Version: 4.9.6-4build5 -------------------------------------------------------------------------------- Finished at 20200305-0839 Build needed 00:23:25, 703920k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18801917 Scanning for processes to kill in build PACKAGEBUILD-18801917