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mira package

mira 4.9.6-4build4 source package in Ubuntu

Changelog

mira (4.9.6-4build4) focal; urgency=medium

  * No-change rebuild for icu soname change.

 -- Matthias Klose <email address hidden>  Tue, 03 Mar 2020 21:21:42 +0100

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Uploaded by:
Matthias Klose
Uploaded to:
Focal
Original maintainer:
Ubuntu Developers
Architectures:
any all
Section:
science
Urgency:
Medium Urgency

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File Size SHA-256 Checksum
mira_4.9.6.orig.tar.bz2 14.3 MiB e910479bc5f3f205913ac81cd2a24449cc175a6d1ae1fe3ae33ea0e100435b16
mira_4.9.6-4build4.debian.tar.xz 32.1 KiB caf633378e54ee599a93bc78725756ac27be8988491256ab7d4b03266d147586
mira_4.9.6-4build4.dsc 2.6 KiB ae2c68b7d39ad4db00cc79568f5a52b82da37933aad67ba085edc565bb06b492

Available diffs

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Binary packages built by this source

mira-assembler: Whole Genome Shotgun and EST Sequence Assembler

 The mira genome fragment assembler is a specialised assembler for
 sequencing projects classified as 'hard' due to high number of similar
 repeats. For expressed sequence tags (ESTs) transcripts, miraEST is
 specialised on reconstructing pristine mRNA transcripts while
 detecting and classifying single nucleotide polymorphisms (SNP)
 occurring in different variations thereof.
 .
 The assembler is routinely used for such various tasks as mutation
 detection in different cell types, similarity analysis of transcripts
 between organisms, and pristine assembly of sequences from various
 sources for oligo design in clinical microarray experiments.
 .
 The package provides the following executables:
 Binaries provided:
  * mira: for assembly of genome sequences
  * miramem: estimating memory needed to assemble projects.
  * mirabait: a "grep" like tool to select reads with kmers up to 256 bases.
  * miraconvert: is a tool to convert, extract and sometimes recalculate all
    kinds of data related to sequence assembly files.

mira-assembler-dbgsym: debug symbols for mira-assembler
mira-doc: documentation for the mira assembler

 The mira genome fragment assembler is a specialised assembler for
 sequencing projects classified as 'hard' due to high number of similar
 repeats.
 .
 This package contains an HTML book introducing to mira.

mira-rfam-12s-rrna: extract of RFAM 12 rRNA database

 The mira genome fragment assembler is a specialised assembler for
 sequencing projects classified as 'hard' due to high number of similar
 repeats.
 .
 This package contains data to enable MIRA and MIRABAIT to search for rRNA and
 rDNA. This data set contains an excerpt of the RFAM database.