RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lgw01-37 3.13.0-92-generic #139-Ubuntu SMP Tue Jun 28 20:42:26 UTC 2016 x86_64 Buildd toolchain package versions: launchpad-buildd_139 python-lpbuildd_139 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa8 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.04.1 bzr_2.6.0+bzr6593-1ubuntu1.5 git-build-recipe_0.3~git201603101733.90b6821~ubuntu14.04.2 git_1:1.9.1-1ubuntu0.3 dpkg-dev_1.17.5ubuntu5.7 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1 qemu-user-static_2.0.0+dfsg-2ubuntu1.25. Syncing the system clock with the buildd NTP service... 4 Aug 10:39:51 ntpdate[1674]: adjust time server 10.211.37.1 offset -0.165721 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-10560653', '/home/buildd/filecache-default/063eeb43ee0a3186cd7a3c6a3a452f2f4c9a8d95'] Unpacking chroot for build PACKAGEBUILD-10560653 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-10560653'] Mounting chroot for build PACKAGEBUILD-10560653 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-10560653', 'deb http://ftpmaster.internal/ubuntu yakkety main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-security main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-updates main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-10560653 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-10560653', 'amd64'] Updating debian chroot for build PACKAGEBUILD-10560653 Get:1 http://ftpmaster.internal/ubuntu yakkety InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety-updates InRelease [92.2 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety-proposed InRelease [95.7 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main amd64 Packages [1179 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main Translation-en [565 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/universe amd64 Packages [7784 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/universe Translation-en [4485 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety-security/main amd64 Packages [64 B] Get:10 http://ftpmaster.internal/ubuntu yakkety-security/main Translation-en [64 B] Get:11 http://ftpmaster.internal/ubuntu yakkety-security/universe amd64 Packages [64 B] Get:12 http://ftpmaster.internal/ubuntu yakkety-security/universe Translation-en [64 B] Get:13 http://ftpmaster.internal/ubuntu yakkety-updates/main amd64 Packages [64 B] Get:14 http://ftpmaster.internal/ubuntu yakkety-updates/main Translation-en [64 B] Get:15 http://ftpmaster.internal/ubuntu yakkety-updates/universe amd64 Packages [64 B] Get:16 http://ftpmaster.internal/ubuntu yakkety-updates/universe Translation-en [64 B] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 Packages [150 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main Translation-en [56.7 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/universe amd64 Packages [611 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety-proposed/universe Translation-en [232 kB] Fetched 15.6 MB in 4s (3292 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-5 libprocps4 libstdc++-5-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-6 g++-6 gcc-6 libasan3 libcap-ng0 libgcc-6-dev libmpx2 libpng16-16 libprocps6 libstdc++-6-dev The following packages will be upgraded: apt apt-transport-https base-files bash binutils bsdutils bzip2 cpp cpp-5 dash debconf debianutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs findutils g++ g++-5 gcc gcc-5 gcc-5-base gcc-6-base grep hostname init init-system-helpers libapparmor1 libapt-pkg5.0 libasan2 libasn1-8-heimdal libatomic1 libaudit-common libaudit1 libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcap2-bin libcc1-0 libcilkrts5 libcomerr2 libcryptsetup4 libcurl3-gnutls libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfdisk1 libgcc-5-dev libgcc1 libgcrypt20 libgdbm3 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn11 libisl15 libitm1 libk5crypto3 libkeyutils1 libkmod2 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 liblsan0 liblzma5 libmount1 libmpfr4 libmpx0 libncurses5 libncursesw5 libp11-kit0 libpcre3 libperl5.22 libquadmath0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libtsan0 libubsan0 libudev1 libusb-0.1-4 libuuid1 libwind0-heimdal linux-libc-dev login lsb-base make mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.22 pkgbinarymangler policyrcd-script-zg2 procps sed systemd systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux xz-utils zlib1g 140 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. Need to get 169 MB of archives. After this operation, 489 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu yakkety/main amd64 base-files amd64 9.6ubuntu2 [56.5 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety/main amd64 debianutils amd64 4.8 [85.7 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main amd64 bash amd64 4.3-15ubuntu1 [593 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main amd64 bsdutils amd64 1:2.28-5ubuntu2 [54.9 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main amd64 tar amd64 1.29b-1 [230 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main amd64 dpkg amd64 1.18.9ubuntu2 [2142 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main amd64 dash amd64 0.5.8-2.3ubuntu1 [104 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main amd64 libc6-dev amd64 2.23-1ubuntu1 [2082 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main amd64 libc-dev-bin amd64 2.23-1ubuntu1 [68.8 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 linux-libc-dev amd64 4.4.0-34.53 [834 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 gcc-6-base amd64 6.1.1-11ubuntu11 [17.0 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libgcc1 amd64 1:6.1.1-11ubuntu11 [38.6 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main amd64 libc6 amd64 2.23-1ubuntu1 [2580 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main amd64 e2fslibs amd64 1.43.1-1 [152 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main amd64 e2fsprogs amd64 1.43.1-1 [484 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main amd64 findutils amd64 4.6.0+git+20160703-2 [281 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main amd64 grep amd64 2.25-6 [152 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main amd64 hostname amd64 3.18 [11.0 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main amd64 login amd64 1:4.2-3.1ubuntu6 [305 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsmartcols1 amd64 2.28-5ubuntu2 [64.6 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libaudit-common all 1:2.6.5-1ubuntu1 [4660 B] Get:22 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcap-ng0 amd64 0.7.7-3 [10.9 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libaudit1 amd64 1:2.6.5-1ubuntu1 [37.3 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libpcre3 amd64 2:8.39-1 [228 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main amd64 libselinux1 amd64 2.5-3 [65.3 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsepol1 amd64 2.5-1 [216 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsemanage-common all 2.5-1 [6800 B] Get:28 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsemanage1 amd64 2.5-1 [80.3 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main amd64 bzip2 amd64 1.0.6-8build1 [33.5 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main amd64 libbz2-1.0 amd64 1.0.6-8build1 [30.6 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main amd64 passwd amd64 1:4.2-3.1ubuntu6 [781 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main amd64 libuuid1 amd64 2.28-5ubuntu2 [15.2 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main amd64 libblkid1 amd64 2.28-5ubuntu2 [106 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/main amd64 libfdisk1 amd64 2.28-5ubuntu2 [138 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety/main amd64 perl-modules-5.22 all 5.22.2-3 [2631 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/main amd64 libperl5.22 amd64 5.22.2-3 [3397 kB] Get:37 http://ftpmaster.internal/ubuntu yakkety/main amd64 perl amd64 5.22.2-3 [238 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety/main amd64 perl-base amd64 5.22.2-3 [1299 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/main amd64 libdb5.3 amd64 5.3.28-12 [669 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgdbm3 amd64 1.8.3-14 [16.8 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/main amd64 zlib1g amd64 1:1.2.8.dfsg-2ubuntu5 [51.1 kB] Get:42 http://ftpmaster.internal/ubuntu yakkety/main amd64 init-system-helpers all 1.42 [37.5 kB] Get:43 http://ftpmaster.internal/ubuntu yakkety/main amd64 util-linux amd64 2.28-5ubuntu2 [888 kB] Get:44 http://ftpmaster.internal/ubuntu yakkety/main amd64 sysvinit-utils amd64 2.88dsf-59.8git1 [18.3 kB] Get:45 http://ftpmaster.internal/ubuntu yakkety/main amd64 mount amd64 2.28-5ubuntu2 [123 kB] Get:46 http://ftpmaster.internal/ubuntu yakkety/main amd64 ncurses-bin amd64 6.0+20160625-1ubuntu1 [136 kB] Get:47 http://ftpmaster.internal/ubuntu yakkety/main amd64 sed amd64 4.2.2-7.1 [140 kB] Get:48 http://ftpmaster.internal/ubuntu yakkety/main amd64 init amd64 1.42 [5158 B] Get:49 http://ftpmaster.internal/ubuntu yakkety/main amd64 libc-bin amd64 2.23-1ubuntu1 [632 kB] Get:50 http://ftpmaster.internal/ubuntu yakkety/main amd64 ncurses-base all 6.0+20160625-1ubuntu1 [16.6 kB] Get:51 http://ftpmaster.internal/ubuntu yakkety/main amd64 liblzma5 amd64 5.1.1alpha+20120614-2.1ubuntu1 [81.0 kB] Get:52 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libstdc++6 amd64 6.1.1-11ubuntu11 [400 kB] Get:53 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libapt-pkg5.0 amd64 1.3~pre2ubuntu4 [732 kB] Get:54 http://ftpmaster.internal/ubuntu yakkety/main amd64 ubuntu-keyring all 2016.05.13 [16.5 kB] Get:55 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 apt amd64 1.3~pre2ubuntu4 [1020 kB] Get:56 http://ftpmaster.internal/ubuntu yakkety/main amd64 debconf all 1.5.59ubuntu1 [136 kB] Get:57 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgpg-error0 amd64 1.24-1 [34.0 kB] Get:58 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgcrypt20 amd64 1.7.2-2 [399 kB] Get:59 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libapparmor1 amd64 2.10.95-4ubuntu3 [32.2 kB] Get:60 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcap2 amd64 1:2.25-1 [13.3 kB] Get:61 http://ftpmaster.internal/ubuntu yakkety/main amd64 libudev1 amd64 231-1 [59.9 kB] Get:62 http://ftpmaster.internal/ubuntu yakkety/main amd64 libdevmapper1.02.1 amd64 2:1.02.130-1ubuntu1 [161 kB] Get:63 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcryptsetup4 amd64 2:1.7.2-0ubuntu1 [76.0 kB] Get:64 http://ftpmaster.internal/ubuntu yakkety/main amd64 libidn11 amd64 1.33-1 [45.0 kB] Get:65 http://ftpmaster.internal/ubuntu yakkety/main amd64 libkmod2 amd64 22-1.1ubuntu1 [39.9 kB] Get:66 http://ftpmaster.internal/ubuntu yakkety/main amd64 libmount1 amd64 2.28-5ubuntu2 [116 kB] Get:67 http://ftpmaster.internal/ubuntu yakkety/main amd64 libseccomp2 amd64 2.3.1-2ubuntu2 [36.8 kB] Get:68 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcap2-bin amd64 1:2.25-1 [20.1 kB] Get:69 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsystemd0 amd64 231-1 [212 kB] Get:70 http://ftpmaster.internal/ubuntu yakkety/main amd64 systemd amd64 231-1 [2269 kB] Get:71 http://ftpmaster.internal/ubuntu yakkety/main amd64 systemd-sysv amd64 231-1 [16.8 kB] Get:72 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcomerr2 amd64 1.43.1-1 [9840 B] Get:73 http://ftpmaster.internal/ubuntu yakkety/main amd64 libdebconfclient0 amd64 0.213ubuntu1 [6048 B] Get:74 http://ftpmaster.internal/ubuntu yakkety/main amd64 libncurses5 amd64 6.0+20160625-1ubuntu1 [93.0 kB] Get:75 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtinfo5 amd64 6.0+20160625-1ubuntu1 [77.0 kB] Get:76 http://ftpmaster.internal/ubuntu yakkety/main amd64 libncursesw5 amd64 6.0+20160625-1ubuntu1 [114 kB] Get:77 http://ftpmaster.internal/ubuntu yakkety/main amd64 libss2 amd64 1.43.1-1 [10.8 kB] Get:78 http://ftpmaster.internal/ubuntu yakkety/main amd64 lsb-base all 9.20160110ubuntu5 [13.2 kB] Get:79 http://ftpmaster.internal/ubuntu yakkety/main amd64 multiarch-support amd64 2.23-1ubuntu1 [6822 B] Get:80 http://ftpmaster.internal/ubuntu yakkety/main amd64 libusb-0.1-4 amd64 2:0.1.12-30 [17.2 kB] Get:81 http://ftpmaster.internal/ubuntu yakkety/main amd64 libprocps6 amd64 2:3.3.12-1ubuntu2 [31.2 kB] Get:82 http://ftpmaster.internal/ubuntu yakkety/main amd64 procps amd64 2:3.3.12-1ubuntu2 [224 kB] Get:83 http://ftpmaster.internal/ubuntu yakkety/main amd64 tzdata all 2016f-1 [169 kB] Get:84 http://ftpmaster.internal/ubuntu yakkety/main amd64 dmsetup amd64 2:1.02.130-1ubuntu1 [75.3 kB] Get:85 http://ftpmaster.internal/ubuntu yakkety/main amd64 libslang2 amd64 2.3.0-2.3ubuntu1 [414 kB] Get:86 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsqlite3-0 amd64 3.13.0-1 [478 kB] Get:87 http://ftpmaster.internal/ubuntu yakkety/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu7 [1121 kB] Get:88 http://ftpmaster.internal/ubuntu yakkety/main amd64 xz-utils amd64 5.1.1alpha+20120614-2.1ubuntu1 [79.6 kB] Get:89 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgmp10 amd64 2:6.1.1+dfsg-1 [240 kB] Get:90 http://ftpmaster.internal/ubuntu yakkety/main amd64 libp11-kit0 amd64 0.23.2-4 [105 kB] Get:91 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtasn1-6 amd64 4.8-1 [42.5 kB] Get:92 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgnutls30 amd64 3.4.14-1ubuntu1 [562 kB] Get:93 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgssapi-krb5-2 amd64 1.14.2+dfsg-1ubuntu1 [121 kB] Get:94 http://ftpmaster.internal/ubuntu yakkety/main amd64 libkrb5-3 amd64 1.14.2+dfsg-1ubuntu1 [274 kB] Get:95 http://ftpmaster.internal/ubuntu yakkety/main amd64 libkrb5support0 amd64 1.14.2+dfsg-1ubuntu1 [31.4 kB] Get:96 http://ftpmaster.internal/ubuntu yakkety/main amd64 libk5crypto3 amd64 1.14.2+dfsg-1ubuntu1 [81.2 kB] Get:97 http://ftpmaster.internal/ubuntu yakkety/main amd64 libkeyutils1 amd64 1.5.9-9ubuntu1 [9512 B] Get:98 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libroken18-heimdal amd64 1.7~git20160703+dfsg-1 [41.0 kB] Get:99 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libasn1-8-heimdal amd64 1.7~git20160703+dfsg-1 [174 kB] Get:100 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libheimbase1-heimdal amd64 1.7~git20160703+dfsg-1 [29.2 kB] Get:101 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libhcrypto4-heimdal amd64 1.7~git20160703+dfsg-1 [88.0 kB] Get:102 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libwind0-heimdal amd64 1.7~git20160703+dfsg-1 [47.9 kB] Get:103 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libhx509-5-heimdal amd64 1.7~git20160703+dfsg-1 [107 kB] Get:104 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libkrb5-26-heimdal amd64 1.7~git20160703+dfsg-1 [202 kB] Get:105 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libheimntlm0-heimdal amd64 1.7~git20160703+dfsg-1 [15.1 kB] Get:106 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libgssapi3-heimdal amd64 1.7~git20160703+dfsg-1 [96.7 kB] Get:107 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsasl2-modules-db amd64 2.1.26.dfsg1-15 [14.5 kB] Get:108 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsasl2-2 amd64 2.1.26.dfsg1-15 [48.7 kB] Get:109 http://ftpmaster.internal/ubuntu yakkety/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu4 [161 kB] Get:110 http://ftpmaster.internal/ubuntu yakkety/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1 [54.2 kB] Get:111 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libcurl3-gnutls amd64 7.50.1-1ubuntu1 [186 kB] Get:112 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 apt-transport-https amd64 1.3~pre2ubuntu4 [26.3 kB] Get:113 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpng16-16 amd64 1.6.23-1 [173 kB] Get:114 http://ftpmaster.internal/ubuntu yakkety/main amd64 openssl amd64 1.0.2g-1ubuntu7 [491 kB] Get:115 http://ftpmaster.internal/ubuntu yakkety/main amd64 binutils amd64 2.26.1-1ubuntu2 [2421 kB] Get:116 http://ftpmaster.internal/ubuntu yakkety/main amd64 libisl15 amd64 0.17.1-1 [540 kB] Get:117 http://ftpmaster.internal/ubuntu yakkety/main amd64 libmpfr4 amd64 3.1.4-2 [190 kB] Get:118 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 cpp-6 amd64 6.1.1-11ubuntu11 [31.5 MB] Get:119 http://ftpmaster.internal/ubuntu yakkety/main amd64 cpp amd64 4:6.1.1-1ubuntu2 [27.4 kB] Get:120 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libquadmath0 amd64 6.1.1-11ubuntu11 [132 kB] Get:121 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libgomp1 amd64 6.1.1-11ubuntu11 [74.1 kB] Get:122 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libitm1 amd64 6.1.1-11ubuntu11 [27.9 kB] Get:123 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libatomic1 amd64 6.1.1-11ubuntu11 [9156 B] Get:124 http://ftpmaster.internal/ubuntu yakkety/main amd64 libasan2 amd64 5.4.0-6ubuntu1 [264 kB] Get:125 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 liblsan0 amd64 6.1.1-11ubuntu11 [117 kB] Get:126 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libtsan0 amd64 6.1.1-11ubuntu11 [260 kB] Get:127 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libubsan0 amd64 6.1.1-11ubuntu11 [108 kB] Get:128 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libcilkrts5 amd64 6.1.1-11ubuntu11 [40.9 kB] Get:129 http://ftpmaster.internal/ubuntu yakkety/main amd64 libmpx0 amd64 5.4.0-6ubuntu1 [9752 B] Get:130 http://ftpmaster.internal/ubuntu yakkety/main amd64 g++-5 amd64 5.4.0-6ubuntu1 [8429 kB] Get:131 http://ftpmaster.internal/ubuntu yakkety/main amd64 gcc-5 amd64 5.4.0-6ubuntu1 [8550 kB] Get:132 http://ftpmaster.internal/ubuntu yakkety/main amd64 libstdc++-5-dev amd64 5.4.0-6ubuntu1 [1424 kB] Get:133 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgcc-5-dev amd64 5.4.0-6ubuntu1 [2229 kB] Get:134 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libcc1-0 amd64 6.1.1-11ubuntu11 [31.1 kB] Get:135 http://ftpmaster.internal/ubuntu yakkety/main amd64 cpp-5 amd64 5.4.0-6ubuntu1 [7780 kB] Get:136 http://ftpmaster.internal/ubuntu yakkety/main amd64 gcc-5-base amd64 5.4.0-6ubuntu1 [16.6 kB] Get:137 http://ftpmaster.internal/ubuntu yakkety/main amd64 dpkg-dev all 1.18.9ubuntu2 [641 kB] Get:138 http://ftpmaster.internal/ubuntu yakkety/main amd64 libdpkg-perl all 1.18.9ubuntu2 [203 kB] Get:139 http://ftpmaster.internal/ubuntu yakkety/main amd64 make amd64 4.1-9 [154 kB] Get:140 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libasan3 amd64 6.1.1-11ubuntu11 [308 kB] Get:141 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libmpx2 amd64 6.1.1-11ubuntu11 [11.5 kB] Get:142 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libgcc-6-dev amd64 6.1.1-11ubuntu11 [2309 kB] Get:143 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 gcc-6 amd64 6.1.1-11ubuntu11 [31.1 MB] Get:144 http://ftpmaster.internal/ubuntu yakkety/main amd64 gcc amd64 4:6.1.1-1ubuntu2 [5170 B] Get:145 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libstdc++-6-dev amd64 6.1.1-11ubuntu11 [1413 kB] Get:146 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 g++-6 amd64 6.1.1-11ubuntu11 [33.7 MB] Get:147 http://ftpmaster.internal/ubuntu yakkety/main amd64 g++ amd64 4:6.1.1-1ubuntu2 [1478 B] Get:148 http://ftpmaster.internal/ubuntu yakkety/main amd64 optipng amd64 0.7.6-1build1 [81.9 kB] Get:149 http://ftpmaster.internal/ubuntu yakkety/main amd64 pkgbinarymangler all 130 [43.2 kB] Get:150 http://ftpmaster.internal/ubuntu yakkety/main amd64 policyrcd-script-zg2 all 0.1-3 [5610 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 169 MB in 47s (3587 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12166 files and directories currently installed.) Preparing to unpack .../base-files_9.6ubuntu2_amd64.deb ... Unpacking base-files (9.6ubuntu2) over (9.6ubuntu1) ... Setting up base-files (9.6ubuntu2) ... Installing new version of config file /etc/update-motd.d/10-help-text ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12166 files and directories currently installed.) Preparing to unpack .../debianutils_4.8_amd64.deb ... Unpacking debianutils (4.8) over (4.7) ... Setting up debianutils (4.8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12166 files and directories currently installed.) Preparing to unpack .../bash_4.3-15ubuntu1_amd64.deb ... Unpacking bash (4.3-15ubuntu1) over (4.3-14ubuntu1) ... Setting up bash (4.3-15ubuntu1) ... Installing new version of config file /etc/skel/.profile ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12166 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.28-5ubuntu2_amd64.deb ... Unpacking bsdutils (1:2.28-5ubuntu2) over (1:2.27.1-6ubuntu3) ... Setting up bsdutils (1:2.28-5ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12166 files and directories currently installed.) Preparing to unpack .../archives/tar_1.29b-1_amd64.deb ... Unpacking tar (1.29b-1) over (1.28-2.1) ... Setting up tar (1.29b-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12166 files and directories currently installed.) Preparing to unpack .../dpkg_1.18.9ubuntu2_amd64.deb ... Unpacking dpkg (1.18.9ubuntu2) over (1.18.4ubuntu1) ... Setting up dpkg (1.18.9ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12176 files and directories currently installed.) Preparing to unpack .../dash_0.5.8-2.3ubuntu1_amd64.deb ... Unpacking dash (0.5.8-2.3ubuntu1) over (0.5.8-2.1ubuntu2) ... Setting up dash (0.5.8-2.3ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12176 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.23-1ubuntu1_amd64.deb ... Unpacking libc6-dev:amd64 (2.23-1ubuntu1) over (2.23-0ubuntu3) ... Preparing to unpack .../libc-dev-bin_2.23-1ubuntu1_amd64.deb ... Unpacking libc-dev-bin (2.23-1ubuntu1) over (2.23-0ubuntu3) ... Preparing to unpack .../linux-libc-dev_4.4.0-34.53_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.4.0-34.53) over (4.4.0-21.37) ... Preparing to unpack .../gcc-6-base_6.1.1-11ubuntu11_amd64.deb ... Unpacking gcc-6-base:amd64 (6.1.1-11ubuntu11) over (6.0.1-0ubuntu1) ... Setting up gcc-6-base:amd64 (6.1.1-11ubuntu11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12176 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a6.1.1-11ubuntu11_amd64.deb ... Unpacking libgcc1:amd64 (1:6.1.1-11ubuntu11) over (1:6.0.1-0ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libgcc1:amd64 (1:6.1.1-11ubuntu11) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12176 files and directories currently installed.) Preparing to unpack .../libc6_2.23-1ubuntu1_amd64.deb ... Unpacking libc6:amd64 (2.23-1ubuntu1) over (2.23-0ubuntu3) ... Setting up libc6:amd64 (2.23-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12176 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.43.1-1_amd64.deb ... Unpacking e2fslibs:amd64 (1.43.1-1) over (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up e2fslibs:amd64 (1.43.1-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12176 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.43.1-1_amd64.deb ... Unpacking e2fsprogs (1.43.1-1) over (1.42.13-1ubuntu1) ... Setting up e2fsprogs (1.43.1-1) ... Installing new version of config file /etc/mke2fs.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12162 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20160703-2_amd64.deb ... Unpacking findutils (4.6.0+git+20160703-2) over (4.6.0+git+20160126-2) ... Setting up findutils (4.6.0+git+20160703-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12162 files and directories currently installed.) Preparing to unpack .../archives/grep_2.25-6_amd64.deb ... Unpacking grep (2.25-6) over (2.24-1) ... Setting up grep (2.25-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12162 files and directories currently installed.) Preparing to unpack .../hostname_3.18_amd64.deb ... Unpacking hostname (3.18) over (3.16ubuntu2) ... Setting up hostname (3.18) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12162 files and directories currently installed.) Preparing to unpack .../login_1%3a4.2-3.1ubuntu6_amd64.deb ... Unpacking login (1:4.2-3.1ubuntu6) over (1:4.2-3.1ubuntu5) ... Setting up login (1:4.2-3.1ubuntu6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12162 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.28-5ubuntu2_amd64.deb ... Unpacking libsmartcols1:amd64 (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libsmartcols1:amd64 (2.28-5ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12162 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a2.6.5-1ubuntu1_all.deb ... Unpacking libaudit-common (1:2.6.5-1ubuntu1) over (1:2.4.5-1ubuntu2) ... Setting up libaudit-common (1:2.6.5-1ubuntu1) ... Selecting previously unselected package libcap-ng0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12162 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.7-3_amd64.deb ... Unpacking libcap-ng0:amd64 (0.7.7-3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libcap-ng0:amd64 (0.7.7-3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12167 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.6.5-1ubuntu1_amd64.deb ... Unpacking libaudit1:amd64 (1:2.6.5-1ubuntu1) over (1:2.4.5-1ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libaudit1:amd64 (1:2.6.5-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12167 files and directories currently installed.) Preparing to unpack .../libpcre3_2%3a8.39-1_amd64.deb ... Unpacking libpcre3:amd64 (2:8.39-1) over (2:8.38-3.1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libpcre3:amd64 (2:8.39-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12167 files and directories currently installed.) Preparing to unpack .../libselinux1_2.5-3_amd64.deb ... Unpacking libselinux1:amd64 (2.5-3) over (2.4-3build2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libselinux1:amd64 (2.5-3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12167 files and directories currently installed.) Preparing to unpack .../libsepol1_2.5-1_amd64.deb ... Unpacking libsepol1:amd64 (2.5-1) over (2.4-2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libsepol1:amd64 (2.5-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12167 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.5-1_all.deb ... Unpacking libsemanage-common (2.5-1) over (2.3-1build3) ... Setting up libsemanage-common (2.5-1) ... Installing new version of config file /etc/selinux/semanage.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12167 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.5-1_amd64.deb ... Unpacking libsemanage1:amd64 (2.5-1) over (2.3-1build3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libsemanage1:amd64 (2.5-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12167 files and directories currently installed.) Preparing to unpack .../bzip2_1.0.6-8build1_amd64.deb ... Unpacking bzip2 (1.0.6-8build1) over (1.0.6-8) ... Preparing to unpack .../libbz2-1.0_1.0.6-8build1_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.6-8build1) over (1.0.6-8) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libbz2-1.0:amd64 (1.0.6-8build1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12167 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.2-3.1ubuntu6_amd64.deb ... Unpacking passwd (1:4.2-3.1ubuntu6) over (1:4.2-3.1ubuntu5) ... Setting up passwd (1:4.2-3.1ubuntu6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12167 files and directories currently installed.) Preparing to unpack .../libuuid1_2.28-5ubuntu2_amd64.deb ... Unpacking libuuid1:amd64 (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libuuid1:amd64 (2.28-5ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12167 files and directories currently installed.) Preparing to unpack .../libblkid1_2.28-5ubuntu2_amd64.deb ... Unpacking libblkid1:amd64 (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libblkid1:amd64 (2.28-5ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12167 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.28-5ubuntu2_amd64.deb ... Unpacking libfdisk1:amd64 (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libfdisk1:amd64 (2.28-5ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12167 files and directories currently installed.) Preparing to unpack .../perl_5.22.2-3_amd64.deb ... Unpacking perl (5.22.2-3) over (5.22.1-9) ... Preparing to unpack .../perl-modules-5.22_5.22.2-3_all.deb ... Unpacking perl-modules-5.22 (5.22.2-3) over (5.22.1-9) ... Preparing to unpack .../libperl5.22_5.22.2-3_amd64.deb ... Unpacking libperl5.22:amd64 (5.22.2-3) over (5.22.1-9) ... Preparing to unpack .../perl-base_5.22.2-3_amd64.deb ... Unpacking perl-base (5.22.2-3) over (5.22.1-9) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up perl-base (5.22.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12168 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28-12_amd64.deb ... Unpacking libdb5.3:amd64 (5.3.28-12) over (5.3.28-11) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libdb5.3:amd64 (5.3.28-12) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12168 files and directories currently installed.) Preparing to unpack .../libgdbm3_1.8.3-14_amd64.deb ... Unpacking libgdbm3:amd64 (1.8.3-14) over (1.8.3-13.1) ... Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-2ubuntu5_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.8.dfsg-2ubuntu5) over (1:1.2.8.dfsg-2ubuntu4) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up zlib1g:amd64 (1:1.2.8.dfsg-2ubuntu5) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12168 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.42_all.deb ... Unpacking init-system-helpers (1.42) over (1.29ubuntu1) ... Setting up init-system-helpers (1.42) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12172 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.88dsf-59.8git1_amd64.deb ... Unpacking sysvinit-utils (2.88dsf-59.8git1) over (2.88dsf-59.3ubuntu2) ... Replacing files in old package initscripts (2.88dsf-59.3ubuntu2) ... Preparing to unpack .../util-linux_2.28-5ubuntu2_amd64.deb ... Unpacking util-linux (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Setting up util-linux (2.28-5ubuntu2) ... Processing triggers for systemd (229-4ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../mount_2.28-5ubuntu2_amd64.deb ... Unpacking mount (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Setting up mount (2.28-5ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12178 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.0+20160625-1ubuntu1_amd64.deb ... Unpacking ncurses-bin (6.0+20160625-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Setting up ncurses-bin (6.0+20160625-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12177 files and directories currently installed.) Preparing to unpack .../sed_4.2.2-7.1_amd64.deb ... Unpacking sed (4.2.2-7.1) over (4.2.2-7) ... Setting up sed (4.2.2-7.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12177 files and directories currently installed.) Preparing to unpack .../archives/init_1.42_amd64.deb ... Unpacking init (1.42) over (1.29ubuntu1) ... Setting up init (1.42) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12177 files and directories currently installed.) Preparing to unpack .../libc-bin_2.23-1ubuntu1_amd64.deb ... Unpacking libc-bin (2.23-1ubuntu1) over (2.23-0ubuntu3) ... Setting up libc-bin (2.23-1ubuntu1) ... Updating /etc/nsswitch.conf to current default. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12177 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.0+20160625-1ubuntu1_all.deb ... Unpacking ncurses-base (6.0+20160625-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Setting up ncurses-base (6.0+20160625-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12177 files and directories currently installed.) Preparing to unpack .../liblzma5_5.1.1alpha+20120614-2.1ubuntu1_amd64.deb ... Unpacking liblzma5:amd64 (5.1.1alpha+20120614-2.1ubuntu1) over (5.1.1alpha+20120614-2ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up liblzma5:amd64 (5.1.1alpha+20120614-2.1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12177 files and directories currently installed.) Preparing to unpack .../libstdc++6_6.1.1-11ubuntu11_amd64.deb ... Unpacking libstdc++6:amd64 (6.1.1-11ubuntu11) over (5.3.1-14ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libstdc++6:amd64 (6.1.1-11ubuntu11) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12177 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.3~pre2ubuntu4_amd64.deb ... Unpacking libapt-pkg5.0:amd64 (1.3~pre2ubuntu4) over (1.2.10ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libapt-pkg5.0:amd64 (1.3~pre2ubuntu4) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12177 files and directories currently installed.) Preparing to unpack .../ubuntu-keyring_2016.05.13_all.deb ... Unpacking ubuntu-keyring (2016.05.13) over (2012.05.19) ... Setting up ubuntu-keyring (2016.05.13) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: key C0B21F32: "Ubuntu Archive Automatic Signing Key (2012) " not changed gpg: key EFE21092: "Ubuntu CD Image Automatic Signing Key (2012) " not changed gpg: Total number processed: 4 gpg: unchanged: 4 (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12177 files and directories currently installed.) Preparing to unpack .../apt_1.3~pre2ubuntu4_amd64.deb ... Unpacking apt (1.3~pre2ubuntu4) over (1.2.10ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up apt (1.3~pre2ubuntu4) ... Installing new version of config file /etc/cron.daily/apt-compat ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12174 files and directories currently installed.) Preparing to unpack .../debconf_1.5.59ubuntu1_all.deb ... Unpacking debconf (1.5.59ubuntu1) over (1.5.58ubuntu1) ... Setting up debconf (1.5.59ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12174 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.24-1_amd64.deb ... Unpacking libgpg-error0:amd64 (1.24-1) over (1.21-2ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libgpg-error0:amd64 (1.24-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12174 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.2-2_amd64.deb ... Unpacking libgcrypt20:amd64 (1.7.2-2) over (1.6.5-2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libgcrypt20:amd64 (1.7.2-2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12174 files and directories currently installed.) Preparing to unpack .../libapparmor1_2.10.95-4ubuntu3_amd64.deb ... Unpacking libapparmor1:amd64 (2.10.95-4ubuntu3) over (2.10.95-0ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libapparmor1:amd64 (2.10.95-4ubuntu3) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.25-1_amd64.deb ... Unpacking libcap2:amd64 (1:2.25-1) over (1:2.24-12) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libcap2:amd64 (1:2.25-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../libudev1_231-1_amd64.deb ... Unpacking libudev1:amd64 (231-1) over (229-4ubuntu4) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libudev1:amd64 (231-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.130-1ubuntu1_amd64.deb ... Unpacking libdevmapper1.02.1:amd64 (2:1.02.130-1ubuntu1) over (2:1.02.110-1ubuntu10) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.130-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../libcryptsetup4_2%3a1.7.2-0ubuntu1_amd64.deb ... Unpacking libcryptsetup4:amd64 (2:1.7.2-0ubuntu1) over (2:1.6.6-5ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libcryptsetup4:amd64 (2:1.7.2-0ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../libidn11_1.33-1_amd64.deb ... Unpacking libidn11:amd64 (1.33-1) over (1.32-3ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libidn11:amd64 (1.33-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../libkmod2_22-1.1ubuntu1_amd64.deb ... Unpacking libkmod2:amd64 (22-1.1ubuntu1) over (22-1ubuntu4) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libkmod2:amd64 (22-1.1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../libmount1_2.28-5ubuntu2_amd64.deb ... Unpacking libmount1:amd64 (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libmount1:amd64 (2.28-5ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.1-2ubuntu2_amd64.deb ... Unpacking libseccomp2:amd64 (2.3.1-2ubuntu2) over (2.2.3-3ubuntu3) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libseccomp2:amd64 (2.3.1-2ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../libcap2-bin_1%3a2.25-1_amd64.deb ... Unpacking libcap2-bin (1:2.25-1) over (1:2.24-12) ... Setting up libcap2-bin (1:2.25-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12176 files and directories currently installed.) Preparing to unpack .../libsystemd0_231-1_amd64.deb ... Unpacking libsystemd0:amd64 (231-1) over (229-4ubuntu4) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libsystemd0:amd64 (231-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12176 files and directories currently installed.) Preparing to unpack .../systemd_231-1_amd64.deb ... Unpacking systemd (231-1) over (229-4ubuntu4) ... Setting up systemd (231-1) ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.login1.conf ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.systemd1.conf ... Installing new version of config file /etc/pam.d/systemd-user ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removing obsolete conffile /etc/systemd/bootchart.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12178 files and directories currently installed.) Preparing to unpack .../systemd-sysv_231-1_amd64.deb ... Unpacking systemd-sysv (231-1) over (229-4ubuntu4) ... Setting up systemd-sysv (231-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12178 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.43.1-1_amd64.deb ... Unpacking libcomerr2:amd64 (1.43.1-1) over (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libcomerr2:amd64 (1.43.1-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12178 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.213ubuntu1_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.213ubuntu1) over (0.198ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libdebconfclient0:amd64 (0.213ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12178 files and directories currently installed.) Preparing to unpack .../libncurses5_6.0+20160625-1ubuntu1_amd64.deb ... Unpacking libncurses5:amd64 (6.0+20160625-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Preparing to unpack .../libtinfo5_6.0+20160625-1ubuntu1_amd64.deb ... Unpacking libtinfo5:amd64 (6.0+20160625-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libtinfo5:amd64 (6.0+20160625-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12179 files and directories currently installed.) Preparing to unpack .../libncursesw5_6.0+20160625-1ubuntu1_amd64.deb ... Unpacking libncursesw5:amd64 (6.0+20160625-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libncursesw5:amd64 (6.0+20160625-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12179 files and directories currently installed.) Preparing to unpack .../libss2_1.43.1-1_amd64.deb ... Unpacking libss2:amd64 (1.43.1-1) over (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libss2:amd64 (1.43.1-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12179 files and directories currently installed.) Preparing to unpack .../lsb-base_9.20160110ubuntu5_all.deb ... Unpacking lsb-base (9.20160110ubuntu5) over (9.20160110) ... Setting up lsb-base (9.20160110ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12179 files and directories currently installed.) Preparing to unpack .../multiarch-support_2.23-1ubuntu1_amd64.deb ... Unpacking multiarch-support (2.23-1ubuntu1) over (2.23-0ubuntu3) ... Setting up multiarch-support (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12179 files and directories currently installed.) Preparing to unpack .../libusb-0.1-4_2%3a0.1.12-30_amd64.deb ... Unpacking libusb-0.1-4:amd64 (2:0.1.12-30) over (2:0.1.12-28) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libusb-0.1-4:amd64 (2:0.1.12-30) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Selecting previously unselected package libprocps6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12179 files and directories currently installed.) Preparing to unpack .../libprocps6_2%3a3.3.12-1ubuntu2_amd64.deb ... Unpacking libprocps6:amd64 (2:3.3.12-1ubuntu2) ... Preparing to unpack .../procps_2%3a3.3.12-1ubuntu2_amd64.deb ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Unpacking procps (2:3.3.12-1ubuntu2) over (2:3.3.10-4ubuntu2) ... Preparing to unpack .../tzdata_2016f-1_all.deb ... Unpacking tzdata (2016f-1) over (2016d-0ubuntu0.16.04) ... Preparing to unpack .../dmsetup_2%3a1.02.130-1ubuntu1_amd64.deb ... Unpacking dmsetup (2:1.02.130-1ubuntu1) over (2:1.02.110-1ubuntu10) ... Preparing to unpack .../libslang2_2.3.0-2.3ubuntu1_amd64.deb ... Unpacking libslang2:amd64 (2.3.0-2.3ubuntu1) over (2.3.0-2ubuntu1) ... Preparing to unpack .../libsqlite3-0_3.13.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.13.0-1) over (3.11.0-1ubuntu1) ... Preparing to unpack .../libssl1.0.0_1.0.2g-1ubuntu7_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.2g-1ubuntu7) over (1.0.2g-1ubuntu4) ... Preparing to unpack .../xz-utils_5.1.1alpha+20120614-2.1ubuntu1_amd64.deb ... Unpacking xz-utils (5.1.1alpha+20120614-2.1ubuntu1) over (5.1.1alpha+20120614-2ubuntu2) ... Preparing to unpack .../libgmp10_2%3a6.1.1+dfsg-1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.1.1+dfsg-1) over (2:6.1.0+dfsg-2) ... Preparing to unpack .../libp11-kit0_0.23.2-4_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.2-4) over (0.23.2-3) ... Preparing to unpack .../libtasn1-6_4.8-1_amd64.deb ... Unpacking libtasn1-6:amd64 (4.8-1) over (4.7-3) ... Preparing to unpack .../libgnutls30_3.4.14-1ubuntu1_amd64.deb ... Unpacking libgnutls30:amd64 (3.4.14-1ubuntu1) over (3.4.10-4ubuntu1) ... Preparing to unpack .../libgssapi-krb5-2_1.14.2+dfsg-1ubuntu1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.14.2+dfsg-1ubuntu1) over (1.13.2+dfsg-5) ... Preparing to unpack .../libkrb5-3_1.14.2+dfsg-1ubuntu1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.14.2+dfsg-1ubuntu1) over (1.13.2+dfsg-5) ... Preparing to unpack .../libkrb5support0_1.14.2+dfsg-1ubuntu1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.14.2+dfsg-1ubuntu1) over (1.13.2+dfsg-5) ... Preparing to unpack .../libk5crypto3_1.14.2+dfsg-1ubuntu1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.14.2+dfsg-1ubuntu1) over (1.13.2+dfsg-5) ... Preparing to unpack .../libkeyutils1_1.5.9-9ubuntu1_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-9ubuntu1) over (1.5.9-8ubuntu1) ... Preparing to unpack .../libroken18-heimdal_1.7~git20160703+dfsg-1_amd64.deb ... Unpacking libroken18-heimdal:amd64 (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libasn1-8-heimdal_1.7~git20160703+dfsg-1_amd64.deb ... Unpacking libasn1-8-heimdal:amd64 (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libheimbase1-heimdal_1.7~git20160703+dfsg-1_amd64.deb ... Unpacking libheimbase1-heimdal:amd64 (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libhcrypto4-heimdal_1.7~git20160703+dfsg-1_amd64.deb ... Unpacking libhcrypto4-heimdal:amd64 (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libwind0-heimdal_1.7~git20160703+dfsg-1_amd64.deb ... Unpacking libwind0-heimdal:amd64 (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libhx509-5-heimdal_1.7~git20160703+dfsg-1_amd64.deb ... Unpacking libhx509-5-heimdal:amd64 (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libkrb5-26-heimdal_1.7~git20160703+dfsg-1_amd64.deb ... Unpacking libkrb5-26-heimdal:amd64 (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libheimntlm0-heimdal_1.7~git20160703+dfsg-1_amd64.deb ... Unpacking libheimntlm0-heimdal:amd64 (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libgssapi3-heimdal_1.7~git20160703+dfsg-1_amd64.deb ... Unpacking libgssapi3-heimdal:amd64 (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-15_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.26.dfsg1-15) over (2.1.26.dfsg1-14build1) ... Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-15_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.26.dfsg1-15) over (2.1.26.dfsg1-14build1) ... Preparing to unpack .../libldap-2.4-2_2.4.42+dfsg-2ubuntu4_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu4) over (2.4.42+dfsg-2ubuntu3) ... Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d.1-1_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1) over (2.4+20151223.gitfa8646d-1build1) ... Preparing to unpack .../libcurl3-gnutls_7.50.1-1ubuntu1_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.50.1-1ubuntu1) over (7.47.0-1ubuntu2) ... Preparing to unpack .../apt-transport-https_1.3~pre2ubuntu4_amd64.deb ... Unpacking apt-transport-https (1.3~pre2ubuntu4) over (1.2.10ubuntu1) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../libpng16-16_1.6.23-1_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.23-1) ... Preparing to unpack .../openssl_1.0.2g-1ubuntu7_amd64.deb ... Unpacking openssl (1.0.2g-1ubuntu7) over (1.0.2g-1ubuntu4) ... Preparing to unpack .../binutils_2.26.1-1ubuntu2_amd64.deb ... Unpacking binutils (2.26.1-1ubuntu2) over (2.26-8ubuntu2) ... Preparing to unpack .../libisl15_0.17.1-1_amd64.deb ... Unpacking libisl15:amd64 (0.17.1-1) over (0.16.1-1) ... Preparing to unpack .../libmpfr4_3.1.4-2_amd64.deb ... Unpacking libmpfr4:amd64 (3.1.4-2) over (3.1.4-1) ... Selecting previously unselected package cpp-6. Preparing to unpack .../cpp-6_6.1.1-11ubuntu11_amd64.deb ... Unpacking cpp-6 (6.1.1-11ubuntu11) ... Preparing to unpack .../cpp_4%3a6.1.1-1ubuntu2_amd64.deb ... Unpacking cpp (4:6.1.1-1ubuntu2) over (4:5.3.1-1ubuntu1) ... Preparing to unpack .../libquadmath0_6.1.1-11ubuntu11_amd64.deb ... Unpacking libquadmath0:amd64 (6.1.1-11ubuntu11) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libgomp1_6.1.1-11ubuntu11_amd64.deb ... Unpacking libgomp1:amd64 (6.1.1-11ubuntu11) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libitm1_6.1.1-11ubuntu11_amd64.deb ... Unpacking libitm1:amd64 (6.1.1-11ubuntu11) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libatomic1_6.1.1-11ubuntu11_amd64.deb ... Unpacking libatomic1:amd64 (6.1.1-11ubuntu11) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libasan2_5.4.0-6ubuntu1_amd64.deb ... Unpacking libasan2:amd64 (5.4.0-6ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../liblsan0_6.1.1-11ubuntu11_amd64.deb ... Unpacking liblsan0:amd64 (6.1.1-11ubuntu11) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libtsan0_6.1.1-11ubuntu11_amd64.deb ... Unpacking libtsan0:amd64 (6.1.1-11ubuntu11) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libubsan0_6.1.1-11ubuntu11_amd64.deb ... Unpacking libubsan0:amd64 (6.1.1-11ubuntu11) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libcilkrts5_6.1.1-11ubuntu11_amd64.deb ... Unpacking libcilkrts5:amd64 (6.1.1-11ubuntu11) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libmpx0_5.4.0-6ubuntu1_amd64.deb ... Unpacking libmpx0:amd64 (5.4.0-6ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../g++-5_5.4.0-6ubuntu1_amd64.deb ... Unpacking g++-5 (5.4.0-6ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../gcc-5_5.4.0-6ubuntu1_amd64.deb ... Unpacking gcc-5 (5.4.0-6ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libstdc++-5-dev_5.4.0-6ubuntu1_amd64.deb ... Unpacking libstdc++-5-dev:amd64 (5.4.0-6ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libgcc-5-dev_5.4.0-6ubuntu1_amd64.deb ... Unpacking libgcc-5-dev:amd64 (5.4.0-6ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libcc1-0_6.1.1-11ubuntu11_amd64.deb ... Unpacking libcc1-0:amd64 (6.1.1-11ubuntu11) over (5.3.1-14ubuntu2) ... Preparing to unpack .../cpp-5_5.4.0-6ubuntu1_amd64.deb ... Unpacking cpp-5 (5.4.0-6ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../gcc-5-base_5.4.0-6ubuntu1_amd64.deb ... Unpacking gcc-5-base:amd64 (5.4.0-6ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../dpkg-dev_1.18.9ubuntu2_all.deb ... Unpacking dpkg-dev (1.18.9ubuntu2) over (1.18.4ubuntu1) ... Preparing to unpack .../libdpkg-perl_1.18.9ubuntu2_all.deb ... Unpacking libdpkg-perl (1.18.9ubuntu2) over (1.18.4ubuntu1) ... Preparing to unpack .../archives/make_4.1-9_amd64.deb ... Unpacking make (4.1-9) over (4.1-6) ... Selecting previously unselected package libasan3:amd64. Preparing to unpack .../libasan3_6.1.1-11ubuntu11_amd64.deb ... Unpacking libasan3:amd64 (6.1.1-11ubuntu11) ... Selecting previously unselected package libmpx2:amd64. Preparing to unpack .../libmpx2_6.1.1-11ubuntu11_amd64.deb ... Unpacking libmpx2:amd64 (6.1.1-11ubuntu11) ... Selecting previously unselected package libgcc-6-dev:amd64. Preparing to unpack .../libgcc-6-dev_6.1.1-11ubuntu11_amd64.deb ... Unpacking libgcc-6-dev:amd64 (6.1.1-11ubuntu11) ... Selecting previously unselected package gcc-6. Preparing to unpack .../gcc-6_6.1.1-11ubuntu11_amd64.deb ... Unpacking gcc-6 (6.1.1-11ubuntu11) ... Preparing to unpack .../gcc_4%3a6.1.1-1ubuntu2_amd64.deb ... Removing old gcc doc directory. Unpacking gcc (4:6.1.1-1ubuntu2) over (4:5.3.1-1ubuntu1) ... Selecting previously unselected package libstdc++-6-dev:amd64. Preparing to unpack .../libstdc++-6-dev_6.1.1-11ubuntu11_amd64.deb ... Unpacking libstdc++-6-dev:amd64 (6.1.1-11ubuntu11) ... Selecting previously unselected package g++-6. Preparing to unpack .../g++-6_6.1.1-11ubuntu11_amd64.deb ... Unpacking g++-6 (6.1.1-11ubuntu11) ... Preparing to unpack .../g++_4%3a6.1.1-1ubuntu2_amd64.deb ... Unpacking g++ (4:6.1.1-1ubuntu2) over (4:5.3.1-1ubuntu1) ... Preparing to unpack .../optipng_0.7.6-1build1_amd64.deb ... Unpacking optipng (0.7.6-1build1) over (0.7.6-1) ... Preparing to unpack .../pkgbinarymangler_130_all.deb ... Unpacking pkgbinarymangler (130) over (129) ... Preparing to unpack .../policyrcd-script-zg2_0.1-3_all.deb ... Unpacking policyrcd-script-zg2 (0.1-3) over (0.1-2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Processing triggers for systemd (231-1) ... Setting up libc-dev-bin (2.23-1ubuntu1) ... Setting up linux-libc-dev:amd64 (4.4.0-34.53) ... Setting up libc6-dev:amd64 (2.23-1ubuntu1) ... Setting up bzip2 (1.0.6-8build1) ... Setting up perl-modules-5.22 (5.22.2-3) ... Setting up libgdbm3:amd64 (1.8.3-14) ... Setting up libperl5.22:amd64 (5.22.2-3) ... Setting up perl (5.22.2-3) ... Setting up sysvinit-utils (2.88dsf-59.8git1) ... Setting up libncurses5:amd64 (6.0+20160625-1ubuntu1) ... Setting up libprocps6:amd64 (2:3.3.12-1ubuntu2) ... Setting up procps (2:3.3.12-1ubuntu2) ... Installing new version of config file /etc/init.d/procps ... Installing new version of config file /etc/sysctl.conf ... Setting up tzdata (2016f-1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Aug 4 10:43:11 UTC 2016. Universal Time is now: Thu Aug 4 10:43:11 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up dmsetup (2:1.02.130-1ubuntu1) ... Setting up libslang2:amd64 (2.3.0-2.3ubuntu1) ... Setting up libsqlite3-0:amd64 (3.13.0-1) ... Setting up libssl1.0.0:amd64 (1.0.2g-1ubuntu7) ... Setting up xz-utils (5.1.1alpha+20120614-2.1ubuntu1) ... Setting up libgmp10:amd64 (2:6.1.1+dfsg-1) ... Setting up libp11-kit0:amd64 (0.23.2-4) ... Setting up libtasn1-6:amd64 (4.8-1) ... Setting up libgnutls30:amd64 (3.4.14-1ubuntu1) ... Setting up libkrb5support0:amd64 (1.14.2+dfsg-1ubuntu1) ... Setting up libk5crypto3:amd64 (1.14.2+dfsg-1ubuntu1) ... Setting up libkeyutils1:amd64 (1.5.9-9ubuntu1) ... Setting up libkrb5-3:amd64 (1.14.2+dfsg-1ubuntu1) ... Setting up libgssapi-krb5-2:amd64 (1.14.2+dfsg-1ubuntu1) ... Setting up libroken18-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libasn1-8-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libheimbase1-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libhcrypto4-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libwind0-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libhx509-5-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libkrb5-26-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libheimntlm0-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libgssapi3-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-15) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-15) ... Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu4) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1) ... Setting up libcurl3-gnutls:amd64 (7.50.1-1ubuntu1) ... Setting up apt-transport-https (1.3~pre2ubuntu4) ... Setting up libpng16-16:amd64 (1.6.23-1) ... Setting up openssl (1.0.2g-1ubuntu7) ... Setting up binutils (2.26.1-1ubuntu2) ... Setting up libisl15:amd64 (0.17.1-1) ... Setting up libmpfr4:amd64 (3.1.4-2) ... Setting up cpp-6 (6.1.1-11ubuntu11) ... Setting up cpp (4:6.1.1-1ubuntu2) ... Setting up libquadmath0:amd64 (6.1.1-11ubuntu11) ... Setting up libgomp1:amd64 (6.1.1-11ubuntu11) ... Setting up libitm1:amd64 (6.1.1-11ubuntu11) ... Setting up libatomic1:amd64 (6.1.1-11ubuntu11) ... Setting up gcc-5-base:amd64 (5.4.0-6ubuntu1) ... Setting up libasan2:amd64 (5.4.0-6ubuntu1) ... Setting up liblsan0:amd64 (6.1.1-11ubuntu11) ... Setting up libtsan0:amd64 (6.1.1-11ubuntu11) ... Setting up libubsan0:amd64 (6.1.1-11ubuntu11) ... Setting up libcilkrts5:amd64 (6.1.1-11ubuntu11) ... Setting up libmpx0:amd64 (5.4.0-6ubuntu1) ... Setting up cpp-5 (5.4.0-6ubuntu1) ... Setting up libcc1-0:amd64 (6.1.1-11ubuntu11) ... Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1) ... Setting up gcc-5 (5.4.0-6ubuntu1) ... Setting up libstdc++-5-dev:amd64 (5.4.0-6ubuntu1) ... Setting up g++-5 (5.4.0-6ubuntu1) ... Setting up libdpkg-perl (1.18.9ubuntu2) ... Setting up make (4.1-9) ... Setting up dpkg-dev (1.18.9ubuntu2) ... Setting up libasan3:amd64 (6.1.1-11ubuntu11) ... Setting up libmpx2:amd64 (6.1.1-11ubuntu11) ... Setting up libgcc-6-dev:amd64 (6.1.1-11ubuntu11) ... Setting up gcc-6 (6.1.1-11ubuntu11) ... Setting up gcc (4:6.1.1-1ubuntu2) ... Setting up libstdc++-6-dev:amd64 (6.1.1-11ubuntu11) ... Setting up g++-6 (6.1.1-11ubuntu11) ... Setting up g++ (4:6.1.1-1ubuntu2) ... Setting up optipng (0.7.6-1build1) ... Setting up pkgbinarymangler (130) ... Setting up policyrcd-script-zg2 (0.1-3) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Processing triggers for systemd (231-1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-10560653', 'amd64', 'yakkety-proposed', '-c', 'chroot:autobuild', '--arch=amd64', '--dist=yakkety-proposed', '--purge=never', '--nolog', '-A', 'mira_4.9.6-1build1.dsc'] Initiating build PACKAGEBUILD-10560653 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.13.0-92-generic #139-Ubuntu SMP Tue Jun 28 20:42:26 UTC 2016 x86_64 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on lgw01-37.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ mira 4.9.6-1build1 (amd64) 04 Aug 2016 10:43 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: mira Version: 4.9.6-1build1 Source Version: 4.9.6-1build1 Distribution: yakkety-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/mira-YG4cvm/mira-4.9.6' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/mira-YG4cvm' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-10560653/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── mira_4.9.6-1build1.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-8fKLPN/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-8fKLPN/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-8fKLPN/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-8fKLPN/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-8fKLPN/apt_archive ./ Sources [208 B] Get:5 copy:/«BUILDDIR»/resolver-8fKLPN/apt_archive ./ Packages [526 B] Fetched 2853 B in 0s (130 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-8fKLPN/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-5 libprocps4 libstdc++-5-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 770 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-8fKLPN/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 770 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13264 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-autoreconf, autoconf-archive, libbz2-dev, libexpat1-dev, libgoogle-perftools-dev, perl, flex, vim-common, zlib1g-dev, libboost-thread-dev, libboost-regex-dev, libboost-filesystem-dev, libboost-system-dev, libboost-iostreams-dev, docbook-xsl, dblatex Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-autoreconf, autoconf-archive, libbz2-dev, libexpat1-dev, libgoogle-perftools-dev, perl, flex, vim-common, zlib1g-dev, libboost-thread-dev, libboost-regex-dev, libboost-filesystem-dev, libboost-system-dev, libboost-iostreams-dev, docbook-xsl, dblatex dpkg-deb: building package 'sbuild-build-depends-mira-dummy' in '/«BUILDDIR»/resolver-0iucTc/apt_archive/sbuild-build-depends-mira-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-0iucTc/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-0iucTc/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-0iucTc/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-0iucTc/apt_archive ./ Sources [543 B] Get:5 copy:/«BUILDDIR»/resolver-0iucTc/apt_archive ./ Packages [792 B] Fetched 3454 B in 0s (143 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-0iucTc/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install mira build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-5 libprocps4 Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bsdmainutils dblatex debhelper dh-autoreconf dh-strip-nondeterminism docbook-xml docbook-xsl file flex fontconfig-config fonts-dejavu-core gettext gettext-base groff-base icu-devtools intltool-debian libapt-inst2.0 libarchive-zip-perl libasprintf0v5 libavahi-client3 libavahi-common-data libavahi-common3 libboost-atomic1.61-dev libboost-atomic1.61.0 libboost-chrono1.61-dev libboost-chrono1.61.0 libboost-date-time1.61-dev libboost-date-time1.61.0 libboost-filesystem-dev libboost-filesystem1.61-dev libboost-filesystem1.61.0 libboost-iostreams-dev libboost-iostreams1.61-dev libboost-iostreams1.61.0 libboost-regex-dev libboost-regex1.61-dev libboost-regex1.61.0 libboost-serialization1.61-dev libboost-serialization1.61.0 libboost-system-dev libboost-system1.61-dev libboost-system1.61.0 libboost-thread-dev libboost-thread1.61-dev libboost-thread1.61.0 libboost1.61-dev libbz2-dev libcairo2 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdbus-1-3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfl-dev libfontconfig1 libfreetype6 libglib2.0-0 libgoogle-perftools-dev libgoogle-perftools4 libgraphite2-3 libgs9 libgs9-common libharfbuzz-icu0 libharfbuzz0b libice6 libicu-dev libicu57 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libkpathsea6 liblcms2-2 libmagic1 libnspr4 libnss3 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpoppler61 libpotrace0 libptexenc1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsm6 libsynctex1 libtcmalloc-minimal4 libtexlua52 libtexluajit2 libtiff5 libtimedate-perl libtool libunistring0 libunwind-dev libunwind8 libunwind8-dev libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libzzip-0-13 m4 man-db mime-support po-debconf poppler-data preview-latex-style python python-apt python-apt-common python-minimal python2.7 python2.7-minimal sgml-base sgml-data t1utils tex-common texlive texlive-base texlive-bibtex-extra texlive-binaries texlive-extra-utils texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-luatex texlive-math-extra texlive-pictures ucf vim-common x11-common xdg-utils xml-core xsltproc zlib1g-dev Suggested packages: gnu-standards autoconf-doc wamerican | wordlist whois vacation docbook ghostscript graphicsmagick-imagemagick-compat | imagemagick inkscape latex-cjk-all lmodern opensp pdf-viewer texlive-lang-all texlive-lang-cyrillic texlive-xetex transfig xindy dh-make docbook-dsssl docbook-defguide dbtoepub docbook-xsl-doc-html | docbook-xsl-doc-pdf | docbook-xsl-doc-text | docbook-xsl-doc docbook-xsl-saxon fop libsaxon-java libxalan2-java libxslthl-java xalan bison gettext-doc groff libboost1.61-doc libboost-context1.61-dev libboost-coroutine1.61-dev libboost-exception1.61-dev libboost-graph1.61-dev libboost-graph-parallel1.61-dev libboost-locale1.61-dev libboost-log1.61-dev libboost-math1.61-dev libboost-mpi1.61-dev libboost-mpi-python1.61-dev libboost-program-options1.61-dev libboost-python1.61-dev libboost-random1.61-dev libboost-signals1.61-dev libboost-test1.61-dev libboost-timer1.61-dev libboost-wave1.61-dev libboost1.61-tools-dev libmpfrc++-dev libntl-dev cups-common icu-doc liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk python-apt-dbg python-apt-doc python2.7-doc binfmt-support sgml-base-doc perlsgml w3-recs libxml2-utils perl-tk xpdf-reader | pdf-viewer gv | postscript-viewer chktex latexmk fragmaster latexdiff dvidvi dvipng purifyeps lacheck libspreadsheet-parseexcel-perl libfile-which-perl python-pygments texlive-pstricks libtcltk-ruby dot2tex prerex vim-gnome-py2 | vim-gtk-py2 | vim-gtk3-py2 | vim-athena-py2 | vim-nox-py2 gvfs-bin Recommended packages: libxml2-utils curl | wget | lynx-cur libasprintf-dev libgettextpo-dev bzip2-doc dbus libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback javascript-common libltdl-dev libmail-sendmail-perl lsb-release iso-codes lmodern ruby wish ghostscript libyaml-tiny-perl libfile-homedir-perl ruby | ruby-interpreter tex-gyre texlive-fonts-recommended-doc tipa texlive-latex-base-doc texlive-latex-extra-doc prosper texlive-latex-recommended-doc tk texlive-pictures-doc vim | vim-gnome | vim-gtk | vim-gtk3 | vim-athena | vim-nox | vim-tiny libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bsdmainutils dblatex debhelper dh-autoreconf dh-strip-nondeterminism docbook-xml docbook-xsl file flex fontconfig-config fonts-dejavu-core gettext gettext-base groff-base icu-devtools intltool-debian libapt-inst2.0 libarchive-zip-perl libasprintf0v5 libavahi-client3 libavahi-common-data libavahi-common3 libboost-atomic1.61-dev libboost-atomic1.61.0 libboost-chrono1.61-dev libboost-chrono1.61.0 libboost-date-time1.61-dev libboost-date-time1.61.0 libboost-filesystem-dev libboost-filesystem1.61-dev libboost-filesystem1.61.0 libboost-iostreams-dev libboost-iostreams1.61-dev libboost-iostreams1.61.0 libboost-regex-dev libboost-regex1.61-dev libboost-regex1.61.0 libboost-serialization1.61-dev libboost-serialization1.61.0 libboost-system-dev libboost-system1.61-dev libboost-system1.61.0 libboost-thread-dev libboost-thread1.61-dev libboost-thread1.61.0 libboost1.61-dev libbz2-dev libcairo2 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdbus-1-3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfl-dev libfontconfig1 libfreetype6 libglib2.0-0 libgoogle-perftools-dev libgoogle-perftools4 libgraphite2-3 libgs9 libgs9-common libharfbuzz-icu0 libharfbuzz0b libice6 libicu-dev libicu57 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libkpathsea6 liblcms2-2 libmagic1 libnspr4 libnss3 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpoppler61 libpotrace0 libptexenc1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsm6 libsynctex1 libtcmalloc-minimal4 libtexlua52 libtexluajit2 libtiff5 libtimedate-perl libtool libunistring0 libunwind-dev libunwind8 libunwind8-dev libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libzzip-0-13 m4 man-db mime-support po-debconf poppler-data preview-latex-style python python-apt python-apt-common python-minimal python2.7 python2.7-minimal sbuild-build-depends-mira-dummy sgml-base sgml-data t1utils tex-common texlive texlive-base texlive-bibtex-extra texlive-binaries texlive-extra-utils texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-luatex texlive-math-extra texlive-pictures ucf vim-common x11-common xdg-utils xml-core xsltproc zlib1g-dev 0 upgraded, 162 newly installed, 0 to remove and 0 not upgraded. Need to get 199 MB of archives. After this operation, 730 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-mira-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-0iucTc/apt_archive ./ sbuild-build-depends-mira-dummy 0.invalid.0 [1034 B] Get:2 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] Get:3 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main amd64 libx11-data all 2:1.6.3-1ubuntu3 [113 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu3 [572 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main amd64 groff-base amd64 1.22.3-8 [1142 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main amd64 bsdmainutils amd64 9.0.6ubuntu3 [174 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpipeline1 amd64 1.4.1-2 [24.6 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main amd64 man-db amd64 2.7.5-1 [854 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main amd64 sgml-base all 1.28 [12.3 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/universe amd64 autoconf-archive all 20150925-1 [637 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsigsegv2 amd64 2.10-5 [14.1 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main amd64 m4 amd64 1.4.17-5 [195 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main amd64 libfl-dev amd64 2.6.1-1 [13.5 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main amd64 flex amd64 2.6.1-1 [305 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main amd64 x11-common all 1:7.7+13ubuntu3 [22.4 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main amd64 libjpeg-turbo8 amd64 1.5.0-0ubuntu1 [113 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxpm4 amd64 1:3.5.11-1 [33.1 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main amd64 libzzip-0-13 amd64 0.13.62-3 [26.1 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main amd64 poppler-data all 0.4.7-7 [1495 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpython2.7-minimal amd64 2.7.12-1ubuntu1 [338 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main amd64 python2.7-minimal amd64 2.7.12-1ubuntu1 [1323 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety/main amd64 python-minimal amd64 2.7.11-2 [28.3 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main amd64 mime-support all 3.60ubuntu1 [30.1 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main amd64 libexpat1 amd64 2.2.0-1 [70.9 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpython2.7-stdlib amd64 2.7.12-1ubuntu1 [1877 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main amd64 python2.7 amd64 2.7.12-1ubuntu1 [224 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpython-stdlib amd64 2.7.11-2 [7856 B] Get:34 http://ftpmaster.internal/ubuntu yakkety/main amd64 python amd64 2.7.11-2 [139 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety/main amd64 libjbig0 amd64 2.1-3.1 [26.6 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/main amd64 libmagic1 amd64 1:5.28-2ubuntu1 [234 kB] Get:37 http://ftpmaster.internal/ubuntu yakkety/main amd64 file amd64 1:5.28-2ubuntu1 [21.7 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libapt-inst2.0 amd64 1.3~pre2ubuntu4 [55.1 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libboost-iostreams1.61.0 amd64 1.61.0+dfsg-2.1 [28.4 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety/main amd64 libdbus-1-3 amd64 1.10.6-1ubuntu4 [162 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/main amd64 ucf all 3.0036 [52.9 kB] Get:42 http://ftpmaster.internal/ubuntu yakkety/main amd64 vim-common amd64 2:7.4.1829-1ubuntu2 [103 kB] Get:43 http://ftpmaster.internal/ubuntu yakkety/main amd64 libasprintf0v5 amd64 0.19.7-2ubuntu3 [6412 B] Get:44 http://ftpmaster.internal/ubuntu yakkety/main amd64 gettext-base amd64 0.19.7-2ubuntu3 [47.9 kB] Get:45 http://ftpmaster.internal/ubuntu yakkety/main amd64 libglib2.0-0 amd64 2.49.2-2 [1123 kB] Get:46 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libicu57 amd64 57.1-1.1 [7668 kB] Get:47 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libxml2 amd64 2.9.4+dfsg1-1 [697 kB] Get:48 http://ftpmaster.internal/ubuntu yakkety/main amd64 python-apt-common all 1.1.0~beta4ubuntu1 [17.9 kB] Get:49 http://ftpmaster.internal/ubuntu yakkety/main amd64 xml-core all 0.13+nmu2 [23.3 kB] Get:50 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 autoconf all 2.69-10 [321 kB] Get:51 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 autotools-dev all 20160430.1 [39.6 kB] Get:52 http://ftpmaster.internal/ubuntu yakkety/main amd64 automake all 1:1.15-4ubuntu1 [510 kB] Get:53 http://ftpmaster.internal/ubuntu yakkety/main amd64 autopoint all 0.19.7-2ubuntu3 [406 kB] Get:54 http://ftpmaster.internal/ubuntu yakkety/main amd64 sgml-data all 2.0.10 [173 kB] Get:55 http://ftpmaster.internal/ubuntu yakkety/main amd64 docbook-xml all 4.5-7.3 [74.4 kB] Get:56 http://ftpmaster.internal/ubuntu yakkety/main amd64 python-apt amd64 1.1.0~beta4ubuntu1 [141 kB] Get:57 http://ftpmaster.internal/ubuntu yakkety/main amd64 tex-common all 6.05 [545 kB] Get:58 http://ftpmaster.internal/ubuntu yakkety/main amd64 libkpathsea6 amd64 2016.20160513.41080-4 [55.3 kB] Get:59 http://ftpmaster.internal/ubuntu yakkety/main amd64 libptexenc1 amd64 2016.20160513.41080-4 [34.6 kB] Get:60 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsynctex1 amd64 2016.20160513.41080-4 [41.9 kB] Get:61 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtexlua52 amd64 2016.20160513.41080-4 [90.8 kB] Get:62 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtexluajit2 amd64 2016.20160513.41080-4 [228 kB] Get:63 http://ftpmaster.internal/ubuntu yakkety/main amd64 t1utils amd64 1.39-2 [53.4 kB] Get:64 http://ftpmaster.internal/ubuntu yakkety/main amd64 fonts-dejavu-core all 2.36-1 [1041 kB] Get:65 http://ftpmaster.internal/ubuntu yakkety/main amd64 fontconfig-config all 2.11.94-0ubuntu1 [49.9 kB] Get:66 http://ftpmaster.internal/ubuntu yakkety/main amd64 libfreetype6 amd64 2.6.3-3ubuntu1 [320 kB] Get:67 http://ftpmaster.internal/ubuntu yakkety/main amd64 libfontconfig1 amd64 2.11.94-0ubuntu1 [131 kB] Get:68 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpixman-1-0 amd64 0.33.6-1 [231 kB] Get:69 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxcb-render0 amd64 1.11.1-1ubuntu1 [11.4 kB] Get:70 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxcb-shm0 amd64 1.11.1-1ubuntu1 [5588 B] Get:71 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxrender1 amd64 1:0.9.9-2 [18.4 kB] Get:72 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcairo2 amd64 1.14.6-1build1 [555 kB] Get:73 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgraphite2-3 amd64 1.3.8-1ubuntu1 [71.2 kB] Get:74 http://ftpmaster.internal/ubuntu yakkety/main amd64 libavahi-common-data amd64 0.6.32-1ubuntu1 [22.0 kB] Get:75 http://ftpmaster.internal/ubuntu yakkety/main amd64 libavahi-common3 amd64 0.6.32-1ubuntu1 [21.6 kB] Get:76 http://ftpmaster.internal/ubuntu yakkety/main amd64 libavahi-client3 amd64 0.6.32-1ubuntu1 [25.1 kB] Get:77 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcups2 amd64 2.1.4-4 [196 kB] Get:78 http://ftpmaster.internal/ubuntu yakkety/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:79 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtiff5 amd64 4.0.6-2 [145 kB] Get:80 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcupsfilters1 amd64 1.10.0-1 [83.8 kB] Get:81 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcupsimage2 amd64 2.1.4-4 [16.1 kB] Get:82 http://ftpmaster.internal/ubuntu yakkety/main amd64 libijs-0.35 amd64 0.35-12 [15.5 kB] Get:83 http://ftpmaster.internal/ubuntu yakkety/main amd64 libjbig2dec0 amd64 0.13-2 [54.8 kB] Get:84 http://ftpmaster.internal/ubuntu yakkety/main amd64 liblcms2-2 amd64 2.7-1ubuntu1 [137 kB] Get:85 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpaper1 amd64 1.1.24+nmu4ubuntu1 [13.7 kB] Get:86 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgs9-common all 9.19~dfsg+1-0ubuntu1 [2990 kB] Get:87 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgs9 amd64 9.19~dfsg+1-0ubuntu1 [2100 kB] Get:88 http://ftpmaster.internal/ubuntu yakkety/main amd64 libharfbuzz0b amd64 1.2.7-1 [180 kB] Get:89 http://ftpmaster.internal/ubuntu yakkety/main amd64 libharfbuzz-icu0 amd64 1.2.7-1 [5240 B] Get:90 http://ftpmaster.internal/ubuntu yakkety/main amd64 libnspr4 amd64 2:4.12-2ubuntu1 [112 kB] Get:91 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libnss3 amd64 2:3.25-1ubuntu1 [1143 kB] Get:92 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libpoppler61 amd64 0.44.0-3ubuntu2 [770 kB] Get:93 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpotrace0 amd64 1.13-2 [17.7 kB] Get:94 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxt6 amd64 1:1.1.5-1 [160 kB] Get:95 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxmu6 amd64 2:1.1.2-2 [46.0 kB] Get:96 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxaw7 amd64 2:1.0.13-1 [173 kB] Get:97 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxi6 amd64 2:1.7.6-1 [28.6 kB] Get:98 http://ftpmaster.internal/ubuntu yakkety/main amd64 texlive-binaries amd64 2016.20160513.41080-4 [6951 kB] Get:99 http://ftpmaster.internal/ubuntu yakkety/main amd64 xdg-utils all 1.1.1-1ubuntu1 [59.9 kB] Get:100 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpaper-utils amd64 1.1.24+nmu4ubuntu1 [8276 B] Get:101 http://ftpmaster.internal/ubuntu yakkety/main amd64 texlive-base all 2016.20160623-1 [15.7 MB] Get:102 http://ftpmaster.internal/ubuntu yakkety/universe amd64 texlive-fonts-recommended all 2016.20160623-1 [5659 kB] Get:103 http://ftpmaster.internal/ubuntu yakkety/main amd64 texlive-latex-base all 2016.20160623-1 [845 kB] Get:104 http://ftpmaster.internal/ubuntu yakkety/main amd64 texlive-latex-recommended all 2016.20160623-1 [13.0 MB] Get:105 http://ftpmaster.internal/ubuntu yakkety/universe amd64 texlive all 2016.20160623-1 [14.3 kB] Get:106 http://ftpmaster.internal/ubuntu yakkety/universe amd64 texlive-bibtex-extra all 2016.20160623-1 [40.2 MB] Get:107 http://ftpmaster.internal/ubuntu yakkety/main amd64 texlive-extra-utils all 2016.20160623-1 [11.9 MB] Get:108 http://ftpmaster.internal/ubuntu yakkety/main amd64 texlive-pictures all 2016.20160623-1 [3741 kB] Get:109 http://ftpmaster.internal/ubuntu yakkety/main amd64 preview-latex-style all 11.88-1.1ubuntu1 [184 kB] Get:110 http://ftpmaster.internal/ubuntu yakkety/universe amd64 texlive-latex-extra all 2016.20160623-1 [10.4 MB] Get:111 http://ftpmaster.internal/ubuntu yakkety/main amd64 libjs-jquery all 1.12.4-1 [165 kB] Get:112 http://ftpmaster.internal/ubuntu yakkety/universe amd64 texlive-luatex all 2016.20160623-1 [7261 kB] Get:113 http://ftpmaster.internal/ubuntu yakkety/universe amd64 texlive-math-extra all 2016.20160623-1 [17.4 MB] Get:114 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxslt1.1 amd64 1.1.28-4 [146 kB] Get:115 http://ftpmaster.internal/ubuntu yakkety/main amd64 xsltproc amd64 1.1.28-4 [13.4 kB] Get:116 http://ftpmaster.internal/ubuntu yakkety/universe amd64 dblatex all 0.3.7-1 [1452 kB] Get:117 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcroco3 amd64 0.6.11-1 [81.6 kB] Get:118 http://ftpmaster.internal/ubuntu yakkety/main amd64 gettext amd64 0.19.7-2ubuntu3 [1076 kB] Get:119 http://ftpmaster.internal/ubuntu yakkety/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:120 http://ftpmaster.internal/ubuntu yakkety/main amd64 po-debconf all 1.0.19 [234 kB] Get:121 http://ftpmaster.internal/ubuntu yakkety/main amd64 libarchive-zip-perl all 1.58-1 [84.0 kB] Get:122 http://ftpmaster.internal/ubuntu yakkety/main amd64 libfile-stripnondeterminism-perl all 0.022-1 [11.7 kB] Get:123 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:124 http://ftpmaster.internal/ubuntu yakkety/main amd64 dh-strip-nondeterminism all 0.022-1 [4856 B] Get:125 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtool all 2.4.6-1 [194 kB] Get:126 http://ftpmaster.internal/ubuntu yakkety/main amd64 dh-autoreconf all 12 [15.8 kB] Get:127 http://ftpmaster.internal/ubuntu yakkety/main amd64 debhelper all 9.20160709ubuntu1 [707 kB] Get:128 http://ftpmaster.internal/ubuntu yakkety/main amd64 docbook-xsl all 1.79.1+dfsg-1 [1077 kB] Get:129 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 icu-devtools amd64 57.1-1.1 [167 kB] Get:130 http://ftpmaster.internal/ubuntu yakkety/main amd64 libboost1.61-dev amd64 1.61.0+dfsg-2.1 [6821 kB] Get:131 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libboost-atomic1.61.0 amd64 1.61.0+dfsg-2.1 [8122 B] Get:132 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libboost-atomic1.61-dev amd64 1.61.0+dfsg-2.1 [5058 B] Get:133 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libboost-system1.61.0 amd64 1.61.0+dfsg-2.1 [10.2 kB] Get:134 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libboost-chrono1.61.0 amd64 1.61.0+dfsg-2.1 [11.8 kB] Get:135 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libboost-chrono1.61-dev amd64 1.61.0+dfsg-2.1 [12.1 kB] Get:136 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libboost-date-time1.61.0 amd64 1.61.0+dfsg-2.1 [20.8 kB] Get:137 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libboost-serialization1.61.0 amd64 1.61.0+dfsg-2.1 [102 kB] Get:138 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libboost-serialization1.61-dev amd64 1.61.0+dfsg-2.1 [138 kB] Get:139 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libboost-date-time1.61-dev amd64 1.61.0+dfsg-2.1 [25.8 kB] Get:140 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libboost-filesystem1.61.0 amd64 1.61.0+dfsg-2.1 [38.5 kB] Get:141 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libboost-system1.61-dev amd64 1.61.0+dfsg-2.1 [9532 B] Get:142 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libboost-filesystem1.61-dev amd64 1.61.0+dfsg-2.1 [48.5 kB] Get:143 http://ftpmaster.internal/ubuntu yakkety-proposed/universe amd64 libboost-filesystem-dev amd64 1.61.0.0ubuntu1 [2742 B] Get:144 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libboost-regex1.61.0 amd64 1.61.0+dfsg-2.1 [264 kB] Get:145 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libicu-dev amd64 57.1-1.1 [16.4 MB] Get:146 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libboost-regex1.61-dev amd64 1.61.0+dfsg-2.1 [309 kB] Get:147 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libboost-iostreams1.61-dev amd64 1.61.0+dfsg-2.1 [32.7 kB] Get:148 http://ftpmaster.internal/ubuntu yakkety-proposed/universe amd64 libboost-iostreams-dev amd64 1.61.0.0ubuntu1 [2694 B] Get:149 http://ftpmaster.internal/ubuntu yakkety-proposed/universe amd64 libboost-regex-dev amd64 1.61.0.0ubuntu1 [2962 B] Get:150 http://ftpmaster.internal/ubuntu yakkety-proposed/universe amd64 libboost-system-dev amd64 1.61.0.0ubuntu1 [2846 B] Get:151 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libboost-thread1.61.0 amd64 1.61.0+dfsg-2.1 [47.0 kB] Get:152 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libboost-thread1.61-dev amd64 1.61.0+dfsg-2.1 [46.8 kB] Get:153 http://ftpmaster.internal/ubuntu yakkety-proposed/universe amd64 libboost-thread-dev amd64 1.61.0.0ubuntu1 [2726 B] Get:154 http://ftpmaster.internal/ubuntu yakkety/main amd64 libbz2-dev amd64 1.0.6-8build1 [29.3 kB] Get:155 http://ftpmaster.internal/ubuntu yakkety/main amd64 libexpat1-dev amd64 2.2.0-1 [120 kB] Get:156 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtcmalloc-minimal4 amd64 2.4-0ubuntu5 [105 kB] Get:157 http://ftpmaster.internal/ubuntu yakkety/main amd64 libunwind8 amd64 1.1-4.1 [46.5 kB] Get:158 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgoogle-perftools4 amd64 2.4-0ubuntu5 [187 kB] Get:159 http://ftpmaster.internal/ubuntu yakkety/main amd64 libunwind-dev amd64 1.1-4.1 [366 kB] Get:160 http://ftpmaster.internal/ubuntu yakkety/main amd64 libunwind8-dev amd64 1.1-4.1 [2614 B] Get:161 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgoogle-perftools-dev amd64 2.4-0ubuntu5 [407 kB] Get:162 http://ftpmaster.internal/ubuntu yakkety/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-2ubuntu5 [168 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 199 MB in 22s (8741 kB/s) Selecting previously unselected package libxau6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13264 files and directories currently installed.) Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../libxdmcp6_1%3a1.1.2-1.1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-1.1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../libxcb1_1.11.1-1ubuntu1_amd64.deb ... Unpacking libxcb1:amd64 (1.11.1-1ubuntu1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../libx11-data_2%3a1.6.3-1ubuntu3_all.deb ... Unpacking libx11-data (2:1.6.3-1ubuntu3) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../libx11-6_2%3a1.6.3-1ubuntu3_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.3-1ubuntu3) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.3-8_amd64.deb ... Unpacking groff-base (1.22.3-8) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu3_amd64.deb ... Unpacking bsdmainutils (9.0.6ubuntu3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../libpipeline1_1.4.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.5-1_amd64.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../sgml-base_1.28_all.deb ... Unpacking sgml-base (1.28) ... Selecting previously unselected package autoconf-archive. Preparing to unpack .../autoconf-archive_20150925-1_all.deb ... Unpacking autoconf-archive (20150925-1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../libsigsegv2_2.10-5_amd64.deb ... Unpacking libsigsegv2:amd64 (2.10-5) ... Selecting previously unselected package m4. Preparing to unpack .../archives/m4_1.4.17-5_amd64.deb ... Unpacking m4 (1.4.17-5) ... Selecting previously unselected package libfl-dev:amd64. Preparing to unpack .../libfl-dev_2.6.1-1_amd64.deb ... Unpacking libfl-dev:amd64 (2.6.1-1) ... Selecting previously unselected package flex. Preparing to unpack .../flex_2.6.1-1_amd64.deb ... Unpacking flex (2.6.1-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../x11-common_1%3a7.7+13ubuntu3_all.deb ... Unpacking x11-common (1:7.7+13ubuntu3) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../libice6_2%3a1.0.9-1_amd64.deb ... Unpacking libice6:amd64 (2:1.0.9-1) ... Selecting previously unselected package libjpeg-turbo8:amd64. Preparing to unpack .../libjpeg-turbo8_1.5.0-0ubuntu1_amd64.deb ... Unpacking libjpeg-turbo8:amd64 (1.5.0-0ubuntu1) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../libsm6_2%3a1.2.2-1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.2-1) ... Selecting previously unselected package libunistring0:amd64. Preparing to unpack .../libunistring0_0.9.3-5.2ubuntu1_amd64.deb ... Unpacking libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Selecting previously unselected package libxpm4:amd64. Preparing to unpack .../libxpm4_1%3a3.5.11-1_amd64.deb ... Unpacking libxpm4:amd64 (1:3.5.11-1) ... Selecting previously unselected package libzzip-0-13:amd64. Preparing to unpack .../libzzip-0-13_0.13.62-3_amd64.deb ... Unpacking libzzip-0-13:amd64 (0.13.62-3) ... Selecting previously unselected package poppler-data. Preparing to unpack .../poppler-data_0.4.7-7_all.deb ... Unpacking poppler-data (0.4.7-7) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../libpython2.7-minimal_2.7.12-1ubuntu1_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.12-1ubuntu1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../python2.7-minimal_2.7.12-1ubuntu1_amd64.deb ... Unpacking python2.7-minimal (2.7.12-1ubuntu1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../python-minimal_2.7.11-2_amd64.deb ... Unpacking python-minimal (2.7.11-2) ... Selecting previously unselected package mime-support. Preparing to unpack .../mime-support_3.60ubuntu1_all.deb ... Unpacking mime-support (3.60ubuntu1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.2.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.0-1) ... Selecting previously unselected package libpython2.7-stdlib:amd64. Preparing to unpack .../libpython2.7-stdlib_2.7.12-1ubuntu1_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.12-1ubuntu1) ... Selecting previously unselected package python2.7. Preparing to unpack .../python2.7_2.7.12-1ubuntu1_amd64.deb ... Unpacking python2.7 (2.7.12-1ubuntu1) ... Selecting previously unselected package libpython-stdlib:amd64. Preparing to unpack .../libpython-stdlib_2.7.11-2_amd64.deb ... Unpacking libpython-stdlib:amd64 (2.7.11-2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Processing triggers for systemd (231-1) ... Setting up libpython2.7-minimal:amd64 (2.7.12-1ubuntu1) ... Setting up python2.7-minimal (2.7.12-1ubuntu1) ... Setting up python-minimal (2.7.11-2) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16708 files and directories currently installed.) Preparing to unpack .../python_2.7.11-2_amd64.deb ... Unpacking python (2.7.11-2) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../libjbig0_2.1-3.1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.28-2ubuntu1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.28-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.28-2ubuntu1_amd64.deb ... Unpacking file (1:5.28-2ubuntu1) ... Selecting previously unselected package libapt-inst2.0:amd64. Preparing to unpack .../libapt-inst2.0_1.3~pre2ubuntu4_amd64.deb ... Unpacking libapt-inst2.0:amd64 (1.3~pre2ubuntu4) ... Selecting previously unselected package libboost-iostreams1.61.0:amd64. Preparing to unpack .../libboost-iostreams1.61.0_1.61.0+dfsg-2.1_amd64.deb ... Unpacking libboost-iostreams1.61.0:amd64 (1.61.0+dfsg-2.1) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../libdbus-1-3_1.10.6-1ubuntu4_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.10.6-1ubuntu4) ... Selecting previously unselected package ucf. Preparing to unpack .../archives/ucf_3.0036_all.deb ... Moving old data out of the way Unpacking ucf (3.0036) ... Selecting previously unselected package vim-common. Preparing to unpack .../vim-common_2%3a7.4.1829-1ubuntu2_amd64.deb ... Unpacking vim-common (2:7.4.1829-1ubuntu2) ... Selecting previously unselected package libasprintf0v5:amd64. Preparing to unpack .../libasprintf0v5_0.19.7-2ubuntu3_amd64.deb ... Unpacking libasprintf0v5:amd64 (0.19.7-2ubuntu3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.7-2ubuntu3_amd64.deb ... Unpacking gettext-base (0.19.7-2ubuntu3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../libglib2.0-0_2.49.2-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.49.2-2) ... Selecting previously unselected package libicu57:amd64. Preparing to unpack .../libicu57_57.1-1.1_amd64.deb ... Unpacking libicu57:amd64 (57.1-1.1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.4+dfsg1-1_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-1) ... Selecting previously unselected package python-apt-common. Preparing to unpack .../python-apt-common_1.1.0~beta4ubuntu1_all.deb ... Unpacking python-apt-common (1.1.0~beta4ubuntu1) ... Selecting previously unselected package xml-core. Preparing to unpack .../xml-core_0.13+nmu2_all.deb ... Unpacking xml-core (0.13+nmu2) ... Selecting previously unselected package autoconf. Preparing to unpack .../autoconf_2.69-10_all.deb ... Unpacking autoconf (2.69-10) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../autotools-dev_20160430.1_all.deb ... Unpacking autotools-dev (20160430.1) ... Selecting previously unselected package automake. Preparing to unpack .../automake_1%3a1.15-4ubuntu1_all.deb ... Unpacking automake (1:1.15-4ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../autopoint_0.19.7-2ubuntu3_all.deb ... Unpacking autopoint (0.19.7-2ubuntu3) ... Selecting previously unselected package sgml-data. Preparing to unpack .../sgml-data_2.0.10_all.deb ... Unpacking sgml-data (2.0.10) ... Selecting previously unselected package docbook-xml. Preparing to unpack .../docbook-xml_4.5-7.3_all.deb ... Unpacking docbook-xml (4.5-7.3) ... Selecting previously unselected package python-apt. Preparing to unpack .../python-apt_1.1.0~beta4ubuntu1_amd64.deb ... Unpacking python-apt (1.1.0~beta4ubuntu1) ... Selecting previously unselected package tex-common. Preparing to unpack .../tex-common_6.05_all.deb ... Unpacking tex-common (6.05) ... Selecting previously unselected package libkpathsea6:amd64. Preparing to unpack .../libkpathsea6_2016.20160513.41080-4_amd64.deb ... Unpacking libkpathsea6:amd64 (2016.20160513.41080-4) ... Selecting previously unselected package libptexenc1:amd64. Preparing to unpack .../libptexenc1_2016.20160513.41080-4_amd64.deb ... Unpacking libptexenc1:amd64 (2016.20160513.41080-4) ... Selecting previously unselected package libsynctex1:amd64. Preparing to unpack .../libsynctex1_2016.20160513.41080-4_amd64.deb ... Unpacking libsynctex1:amd64 (2016.20160513.41080-4) ... Selecting previously unselected package libtexlua52:amd64. Preparing to unpack .../libtexlua52_2016.20160513.41080-4_amd64.deb ... Unpacking libtexlua52:amd64 (2016.20160513.41080-4) ... Selecting previously unselected package libtexluajit2:amd64. Preparing to unpack .../libtexluajit2_2016.20160513.41080-4_amd64.deb ... Unpacking libtexluajit2:amd64 (2016.20160513.41080-4) ... Selecting previously unselected package t1utils. Preparing to unpack .../t1utils_1.39-2_amd64.deb ... Unpacking t1utils (1.39-2) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../fonts-dejavu-core_2.36-1_all.deb ... Unpacking fonts-dejavu-core (2.36-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../fontconfig-config_2.11.94-0ubuntu1_all.deb ... Unpacking fontconfig-config (2.11.94-0ubuntu1) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../libfreetype6_2.6.3-3ubuntu1_amd64.deb ... Unpacking libfreetype6:amd64 (2.6.3-3ubuntu1) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../libfontconfig1_2.11.94-0ubuntu1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.11.94-0ubuntu1) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../libpixman-1-0_0.33.6-1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.33.6-1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../libxcb-render0_1.11.1-1ubuntu1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.11.1-1ubuntu1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../libxcb-shm0_1.11.1-1ubuntu1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.11.1-1ubuntu1) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../libxrender1_1%3a0.9.9-2_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.9-2) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../libcairo2_1.14.6-1build1_amd64.deb ... Unpacking libcairo2:amd64 (1.14.6-1build1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../libgraphite2-3_1.3.8-1ubuntu1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.8-1ubuntu1) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../libavahi-common-data_0.6.32-1ubuntu1_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.6.32-1ubuntu1) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../libavahi-common3_0.6.32-1ubuntu1_amd64.deb ... Unpacking libavahi-common3:amd64 (0.6.32-1ubuntu1) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../libavahi-client3_0.6.32-1ubuntu1_amd64.deb ... Unpacking libavahi-client3:amd64 (0.6.32-1ubuntu1) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../libcups2_2.1.4-4_amd64.deb ... Unpacking libcups2:amd64 (2.1.4-4) ... Selecting previously unselected package libjpeg8:amd64. Preparing to unpack .../libjpeg8_8c-2ubuntu8_amd64.deb ... Unpacking libjpeg8:amd64 (8c-2ubuntu8) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../libtiff5_4.0.6-2_amd64.deb ... Unpacking libtiff5:amd64 (4.0.6-2) ... Selecting previously unselected package libcupsfilters1:amd64. Preparing to unpack .../libcupsfilters1_1.10.0-1_amd64.deb ... Unpacking libcupsfilters1:amd64 (1.10.0-1) ... Selecting previously unselected package libcupsimage2:amd64. Preparing to unpack .../libcupsimage2_2.1.4-4_amd64.deb ... Unpacking libcupsimage2:amd64 (2.1.4-4) ... Selecting previously unselected package libijs-0.35:amd64. Preparing to unpack .../libijs-0.35_0.35-12_amd64.deb ... Unpacking libijs-0.35:amd64 (0.35-12) ... Selecting previously unselected package libjbig2dec0:amd64. Preparing to unpack .../libjbig2dec0_0.13-2_amd64.deb ... Unpacking libjbig2dec0:amd64 (0.13-2) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../liblcms2-2_2.7-1ubuntu1_amd64.deb ... Unpacking liblcms2-2:amd64 (2.7-1ubuntu1) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../libpaper1_1.1.24+nmu4ubuntu1_amd64.deb ... Unpacking libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... Selecting previously unselected package libgs9-common. Preparing to unpack .../libgs9-common_9.19~dfsg+1-0ubuntu1_all.deb ... Unpacking libgs9-common (9.19~dfsg+1-0ubuntu1) ... Selecting previously unselected package libgs9. Preparing to unpack .../libgs9_9.19~dfsg+1-0ubuntu1_amd64.deb ... Unpacking libgs9 (9.19~dfsg+1-0ubuntu1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../libharfbuzz0b_1.2.7-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (1.2.7-1) ... Selecting previously unselected package libharfbuzz-icu0:amd64. Preparing to unpack .../libharfbuzz-icu0_1.2.7-1_amd64.deb ... Unpacking libharfbuzz-icu0:amd64 (1.2.7-1) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../libnspr4_2%3a4.12-2ubuntu1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.12-2ubuntu1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../libnss3_2%3a3.25-1ubuntu1_amd64.deb ... Unpacking libnss3:amd64 (2:3.25-1ubuntu1) ... Selecting previously unselected package libpoppler61:amd64. Preparing to unpack .../libpoppler61_0.44.0-3ubuntu2_amd64.deb ... Unpacking libpoppler61:amd64 (0.44.0-3ubuntu2) ... Selecting previously unselected package libpotrace0. Preparing to unpack .../libpotrace0_1.13-2_amd64.deb ... Unpacking libpotrace0 (1.13-2) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../libxt6_1%3a1.1.5-1_amd64.deb ... Unpacking libxt6:amd64 (1:1.1.5-1) ... Selecting previously unselected package libxmu6:amd64. Preparing to unpack .../libxmu6_2%3a1.1.2-2_amd64.deb ... Unpacking libxmu6:amd64 (2:1.1.2-2) ... Selecting previously unselected package libxaw7:amd64. Preparing to unpack .../libxaw7_2%3a1.0.13-1_amd64.deb ... Unpacking libxaw7:amd64 (2:1.0.13-1) ... Selecting previously unselected package libxi6:amd64. Preparing to unpack .../libxi6_2%3a1.7.6-1_amd64.deb ... Unpacking libxi6:amd64 (2:1.7.6-1) ... Selecting previously unselected package texlive-binaries. Preparing to unpack .../texlive-binaries_2016.20160513.41080-4_amd64.deb ... Unpacking texlive-binaries (2016.20160513.41080-4) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../xdg-utils_1.1.1-1ubuntu1_all.deb ... Unpacking xdg-utils (1.1.1-1ubuntu1) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../libpaper-utils_1.1.24+nmu4ubuntu1_amd64.deb ... Unpacking libpaper-utils (1.1.24+nmu4ubuntu1) ... Selecting previously unselected package texlive-base. Preparing to unpack .../texlive-base_2016.20160623-1_all.deb ... Unpacking texlive-base (2016.20160623-1) ... Selecting previously unselected package texlive-fonts-recommended. Preparing to unpack .../texlive-fonts-recommended_2016.20160623-1_all.deb ... Unpacking texlive-fonts-recommended (2016.20160623-1) ... Selecting previously unselected package texlive-latex-base. Preparing to unpack .../texlive-latex-base_2016.20160623-1_all.deb ... Unpacking texlive-latex-base (2016.20160623-1) ... Selecting previously unselected package texlive-latex-recommended. Preparing to unpack .../texlive-latex-recommended_2016.20160623-1_all.deb ... Unpacking texlive-latex-recommended (2016.20160623-1) ... Selecting previously unselected package texlive. Preparing to unpack .../texlive_2016.20160623-1_all.deb ... Unpacking texlive (2016.20160623-1) ... Selecting previously unselected package texlive-bibtex-extra. Preparing to unpack .../texlive-bibtex-extra_2016.20160623-1_all.deb ... Unpacking texlive-bibtex-extra (2016.20160623-1) ... Selecting previously unselected package texlive-extra-utils. Preparing to unpack .../texlive-extra-utils_2016.20160623-1_all.deb ... Unpacking texlive-extra-utils (2016.20160623-1) ... Selecting previously unselected package texlive-pictures. Preparing to unpack .../texlive-pictures_2016.20160623-1_all.deb ... Unpacking texlive-pictures (2016.20160623-1) ... Selecting previously unselected package preview-latex-style. Preparing to unpack .../preview-latex-style_11.88-1.1ubuntu1_all.deb ... Unpacking preview-latex-style (11.88-1.1ubuntu1) ... Selecting previously unselected package texlive-latex-extra. Preparing to unpack .../texlive-latex-extra_2016.20160623-1_all.deb ... Unpacking texlive-latex-extra (2016.20160623-1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../libjs-jquery_1.12.4-1_all.deb ... Unpacking libjs-jquery (1.12.4-1) ... Selecting previously unselected package texlive-luatex. Preparing to unpack .../texlive-luatex_2016.20160623-1_all.deb ... Unpacking texlive-luatex (2016.20160623-1) ... Selecting previously unselected package texlive-math-extra. Preparing to unpack .../texlive-math-extra_2016.20160623-1_all.deb ... Unpacking texlive-math-extra (2016.20160623-1) ... Selecting previously unselected package libxslt1.1:amd64. Preparing to unpack .../libxslt1.1_1.1.28-4_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.28-4) ... Selecting previously unselected package xsltproc. Preparing to unpack .../xsltproc_1.1.28-4_amd64.deb ... Unpacking xsltproc (1.1.28-4) ... Selecting previously unselected package dblatex. Preparing to unpack .../dblatex_0.3.7-1_all.deb ... Unpacking dblatex (0.3.7-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../libcroco3_0.6.11-1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.11-1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.19.7-2ubuntu3_amd64.deb ... Unpacking gettext (0.19.7-2ubuntu3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.19_all.deb ... Unpacking po-debconf (1.0.19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../libarchive-zip-perl_1.58-1_all.deb ... Unpacking libarchive-zip-perl (1.58-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../libfile-stripnondeterminism-perl_0.022-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.022-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../dh-strip-nondeterminism_0.022-1_all.deb ... Unpacking dh-strip-nondeterminism (0.022-1) ... Selecting previously unselected package libtool. Preparing to unpack .../libtool_2.4.6-1_all.deb ... Unpacking libtool (2.4.6-1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../dh-autoreconf_12_all.deb ... Unpacking dh-autoreconf (12) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20160709ubuntu1_all.deb ... Unpacking debhelper (9.20160709ubuntu1) ... Selecting previously unselected package docbook-xsl. Preparing to unpack .../docbook-xsl_1.79.1+dfsg-1_all.deb ... Unpacking docbook-xsl (1.79.1+dfsg-1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../icu-devtools_57.1-1.1_amd64.deb ... Unpacking icu-devtools (57.1-1.1) ... Selecting previously unselected package libboost1.61-dev:amd64. Preparing to unpack .../libboost1.61-dev_1.61.0+dfsg-2.1_amd64.deb ... Unpacking libboost1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Selecting previously unselected package libboost-atomic1.61.0:amd64. Preparing to unpack .../libboost-atomic1.61.0_1.61.0+dfsg-2.1_amd64.deb ... Unpacking libboost-atomic1.61.0:amd64 (1.61.0+dfsg-2.1) ... Selecting previously unselected package libboost-atomic1.61-dev:amd64. Preparing to unpack .../libboost-atomic1.61-dev_1.61.0+dfsg-2.1_amd64.deb ... Unpacking libboost-atomic1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Selecting previously unselected package libboost-system1.61.0:amd64. Preparing to unpack .../libboost-system1.61.0_1.61.0+dfsg-2.1_amd64.deb ... Unpacking libboost-system1.61.0:amd64 (1.61.0+dfsg-2.1) ... Selecting previously unselected package libboost-chrono1.61.0:amd64. Preparing to unpack .../libboost-chrono1.61.0_1.61.0+dfsg-2.1_amd64.deb ... Unpacking libboost-chrono1.61.0:amd64 (1.61.0+dfsg-2.1) ... Selecting previously unselected package libboost-chrono1.61-dev:amd64. Preparing to unpack .../libboost-chrono1.61-dev_1.61.0+dfsg-2.1_amd64.deb ... Unpacking libboost-chrono1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Selecting previously unselected package libboost-date-time1.61.0:amd64. Preparing to unpack .../libboost-date-time1.61.0_1.61.0+dfsg-2.1_amd64.deb ... Unpacking libboost-date-time1.61.0:amd64 (1.61.0+dfsg-2.1) ... Selecting previously unselected package libboost-serialization1.61.0:amd64. Preparing to unpack .../libboost-serialization1.61.0_1.61.0+dfsg-2.1_amd64.deb ... Unpacking libboost-serialization1.61.0:amd64 (1.61.0+dfsg-2.1) ... Selecting previously unselected package libboost-serialization1.61-dev:amd64. Preparing to unpack .../libboost-serialization1.61-dev_1.61.0+dfsg-2.1_amd64.deb ... Unpacking libboost-serialization1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Selecting previously unselected package libboost-date-time1.61-dev:amd64. Preparing to unpack .../libboost-date-time1.61-dev_1.61.0+dfsg-2.1_amd64.deb ... Unpacking libboost-date-time1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Selecting previously unselected package libboost-filesystem1.61.0:amd64. Preparing to unpack .../libboost-filesystem1.61.0_1.61.0+dfsg-2.1_amd64.deb ... Unpacking libboost-filesystem1.61.0:amd64 (1.61.0+dfsg-2.1) ... Selecting previously unselected package libboost-system1.61-dev:amd64. Preparing to unpack .../libboost-system1.61-dev_1.61.0+dfsg-2.1_amd64.deb ... Unpacking libboost-system1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Selecting previously unselected package libboost-filesystem1.61-dev:amd64. Preparing to unpack .../libboost-filesystem1.61-dev_1.61.0+dfsg-2.1_amd64.deb ... Unpacking libboost-filesystem1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Selecting previously unselected package libboost-filesystem-dev:amd64. Preparing to unpack .../libboost-filesystem-dev_1.61.0.0ubuntu1_amd64.deb ... Unpacking libboost-filesystem-dev:amd64 (1.61.0.0ubuntu1) ... Selecting previously unselected package libboost-regex1.61.0:amd64. Preparing to unpack .../libboost-regex1.61.0_1.61.0+dfsg-2.1_amd64.deb ... Unpacking libboost-regex1.61.0:amd64 (1.61.0+dfsg-2.1) ... Selecting previously unselected package libicu-dev. Preparing to unpack .../libicu-dev_57.1-1.1_amd64.deb ... Unpacking libicu-dev (57.1-1.1) ... Selecting previously unselected package libboost-regex1.61-dev:amd64. Preparing to unpack .../libboost-regex1.61-dev_1.61.0+dfsg-2.1_amd64.deb ... Unpacking libboost-regex1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Selecting previously unselected package libboost-iostreams1.61-dev:amd64. Preparing to unpack .../libboost-iostreams1.61-dev_1.61.0+dfsg-2.1_amd64.deb ... Unpacking libboost-iostreams1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Selecting previously unselected package libboost-iostreams-dev:amd64. Preparing to unpack .../libboost-iostreams-dev_1.61.0.0ubuntu1_amd64.deb ... Unpacking libboost-iostreams-dev:amd64 (1.61.0.0ubuntu1) ... Selecting previously unselected package libboost-regex-dev:amd64. Preparing to unpack .../libboost-regex-dev_1.61.0.0ubuntu1_amd64.deb ... Unpacking libboost-regex-dev:amd64 (1.61.0.0ubuntu1) ... Selecting previously unselected package libboost-system-dev:amd64. Preparing to unpack .../libboost-system-dev_1.61.0.0ubuntu1_amd64.deb ... Unpacking libboost-system-dev:amd64 (1.61.0.0ubuntu1) ... Selecting previously unselected package libboost-thread1.61.0:amd64. Preparing to unpack .../libboost-thread1.61.0_1.61.0+dfsg-2.1_amd64.deb ... Unpacking libboost-thread1.61.0:amd64 (1.61.0+dfsg-2.1) ... Selecting previously unselected package libboost-thread1.61-dev:amd64. Preparing to unpack .../libboost-thread1.61-dev_1.61.0+dfsg-2.1_amd64.deb ... Unpacking libboost-thread1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Selecting previously unselected package libboost-thread-dev:amd64. Preparing to unpack .../libboost-thread-dev_1.61.0.0ubuntu1_amd64.deb ... Unpacking libboost-thread-dev:amd64 (1.61.0.0ubuntu1) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../libbz2-dev_1.0.6-8build1_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.6-8build1) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../libexpat1-dev_2.2.0-1_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.2.0-1) ... Selecting previously unselected package libtcmalloc-minimal4. Preparing to unpack .../libtcmalloc-minimal4_2.4-0ubuntu5_amd64.deb ... Unpacking libtcmalloc-minimal4 (2.4-0ubuntu5) ... Selecting previously unselected package libunwind8. Preparing to unpack .../libunwind8_1.1-4.1_amd64.deb ... Unpacking libunwind8 (1.1-4.1) ... Selecting previously unselected package libgoogle-perftools4. Preparing to unpack .../libgoogle-perftools4_2.4-0ubuntu5_amd64.deb ... Unpacking libgoogle-perftools4 (2.4-0ubuntu5) ... Selecting previously unselected package libunwind-dev. Preparing to unpack .../libunwind-dev_1.1-4.1_amd64.deb ... Unpacking libunwind-dev (1.1-4.1) ... Selecting previously unselected package libunwind8-dev. Preparing to unpack .../libunwind8-dev_1.1-4.1_amd64.deb ... Unpacking libunwind8-dev (1.1-4.1) ... Selecting previously unselected package libgoogle-perftools-dev. Preparing to unpack .../libgoogle-perftools-dev_2.4-0ubuntu5_amd64.deb ... Unpacking libgoogle-perftools-dev (2.4-0ubuntu5) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu5_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu5) ... Selecting previously unselected package sbuild-build-depends-mira-dummy. Preparing to unpack .../sbuild-build-depends-mira-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-mira-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up python-apt-common (1.1.0~beta4ubuntu1) ... Setting up libgs9-common (9.19~dfsg+1-0ubuntu1) ... Setting up libkpathsea6:amd64 (2016.20160513.41080-4) ... Setting up libjs-jquery (1.12.4-1) ... Setting up libtexlua52:amd64 (2016.20160513.41080-4) ... Setting up libapt-inst2.0:amd64 (1.3~pre2ubuntu4) ... Setting up libexpat1:amd64 (2.2.0-1) ... Setting up libbz2-dev:amd64 (1.0.6-8build1) ... Setting up libsynctex1:amd64 (2016.20160513.41080-4) ... Setting up libptexenc1:amd64 (2016.20160513.41080-4) ... Setting up libboost-system1.61.0:amd64 (1.61.0+dfsg-2.1) ... Setting up libarchive-zip-perl (1.58-1) ... Setting up mime-support (3.60ubuntu1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up liblcms2-2:amd64 (2.7-1ubuntu1) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libsigsegv2:amd64 (2.10-5) ... Setting up fonts-dejavu-core (2.36-1) ... Setting up poppler-data (0.4.7-7) ... Setting up libboost-date-time1.61.0:amd64 (1.61.0+dfsg-2.1) ... Setting up groff-base (1.22.3-8) ... Setting up libglib2.0-0:amd64 (2.49.2-2) ... No schema files found: doing nothing. Setting up libboost-iostreams1.61.0:amd64 (1.61.0+dfsg-2.1) ... Setting up libjpeg-turbo8:amd64 (1.5.0-0ubuntu1) ... Setting up libpipeline1:amd64 (1.4.1-2) ... Setting up m4 (1.4.17-5) ... Setting up sgml-base (1.28) ... Setting up libicu57:amd64 (57.1-1.1) ... Setting up libboost1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Setting up libnspr4:amd64 (2:4.12-2ubuntu1) ... Setting up ucf (3.0036) ... Setting up libxml2:amd64 (2.9.4+dfsg1-1) ... Setting up libfreetype6:amd64 (2.6.3-3ubuntu1) ... Setting up libfl-dev:amd64 (2.6.1-1) ... Setting up libmagic1:amd64 (1:5.28-2ubuntu1) ... Setting up libgraphite2-3:amd64 (1.3.8-1ubuntu1) ... Setting up libcroco3:amd64 (0.6.11-1) ... Setting up libxslt1.1:amd64 (1.1.28-4) ... Setting up libboost-atomic1.61.0:amd64 (1.61.0+dfsg-2.1) ... Setting up libboost-filesystem1.61.0:amd64 (1.61.0+dfsg-2.1) ... Setting up libjbig2dec0:amd64 (0.13-2) ... Setting up libtcmalloc-minimal4 (2.4-0ubuntu5) ... Setting up libpixman-1-0:amd64 (0.33.6-1) ... Setting up autoconf-archive (20150925-1) ... Setting up libboost-atomic1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Setting up libunwind8 (1.1-4.1) ... Setting up autotools-dev (20160430.1) ... Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Setting up libasprintf0v5:amd64 (0.19.7-2ubuntu3) ... Setting up t1utils (1.39-2) ... Setting up libunwind-dev (1.1-4.1) ... Setting up vim-common (2:7.4.1829-1ubuntu2) ... Setting up libijs-0.35:amd64 (0.35-12) ... Setting up libexpat1-dev:amd64 (2.2.0-1) ... Setting up libpotrace0 (1.13-2) ... Setting up libboost-chrono1.61.0:amd64 (1.61.0+dfsg-2.1) ... Setting up icu-devtools (57.1-1.1) ... Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... Setting up xml-core (0.13+nmu2) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libzzip-0-13:amd64 (0.13.62-3) ... Setting up x11-common (1:7.7+13ubuntu3) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.1-1ubuntu1) ... Setting up libboost-serialization1.61.0:amd64 (1.61.0+dfsg-2.1) ... Setting up libtexluajit2:amd64 (2016.20160513.41080-4) ... Setting up libx11-data (2:1.6.3-1ubuntu3) ... Setting up libpython2.7-stdlib:amd64 (2.7.12-1ubuntu1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up autopoint (0.19.7-2ubuntu3) ... Setting up libdbus-1-3:amd64 (1.10.6-1ubuntu4) ... Setting up libavahi-common-data:amd64 (0.6.32-1ubuntu1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu5) ... Setting up libfile-stripnondeterminism-perl (0.022-1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... Creating config file /etc/papersize with new version Setting up libunwind8-dev (1.1-4.1) ... Setting up libboost-system1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Setting up libboost-thread1.61.0:amd64 (1.61.0+dfsg-2.1) ... Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ... Setting up fontconfig-config (2.11.94-0ubuntu1) ... Setting up tex-common (6.05) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libboost-regex1.61.0:amd64 (1.61.0+dfsg-2.1) ... Setting up flex (2.6.1-1) ... Setting up libboost-serialization1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Setting up libboost-system-dev:amd64 (1.61.0.0ubuntu1) ... Setting up python2.7 (2.7.12-1ubuntu1) ... Setting up libnss3:amd64 (2:3.25-1ubuntu1) ... Setting up libharfbuzz0b:amd64 (1.2.7-1) ... Setting up libtiff5:amd64 (4.0.6-2) ... Setting up gettext-base (0.19.7-2ubuntu3) ... Setting up xsltproc (1.1.28-4) ... Setting up preview-latex-style (11.88-1.1ubuntu1) ... Setting up autoconf (2.69-10) ... Setting up libicu-dev (57.1-1.1) ... Setting up file (1:5.28-2ubuntu1) ... Setting up libpython-stdlib:amd64 (2.7.11-2) ... Setting up libboost-chrono1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Setting up libboost-filesystem1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Setting up libboost-regex1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Setting up libboost-date-time1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Setting up libgoogle-perftools4 (2.4-0ubuntu5) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:amd64 (2:1.0.9-1) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-regex-dev:amd64 (1.61.0.0ubuntu1) ... Setting up libavahi-common3:amd64 (0.6.32-1ubuntu1) ... Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... Setting up python (2.7.11-2) ... Setting up libgoogle-perftools-dev (2.4-0ubuntu5) ... Setting up libtool (2.4.6-1) ... Setting up libboost-iostreams1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1) ... Setting up libsm6:amd64 (2:1.2.2-1) ... Setting up libxcb-render0:amd64 (1.11.1-1ubuntu1) ... Setting up libboost-thread1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Setting up libharfbuzz-icu0:amd64 (1.2.7-1) ... Setting up libboost-thread-dev:amd64 (1.61.0.0ubuntu1) ... Setting up gettext (0.19.7-2ubuntu3) ... Setting up libx11-6:amd64 (2:1.6.3-1ubuntu3) ... Setting up libboost-filesystem-dev:amd64 (1.61.0.0ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libboost-iostreams-dev:amd64 (1.61.0.0ubuntu1) ... Setting up libxcb-shm0:amd64 (1.11.1-1ubuntu1) ... Setting up libxpm4:amd64 (1:3.5.11-1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxrender1:amd64 (1:0.9.9-2) ... Setting up libavahi-client3:amd64 (0.6.32-1ubuntu1) ... Setting up libpoppler61:amd64 (0.44.0-3ubuntu2) ... Setting up python-apt (1.1.0~beta4ubuntu1) ... Setting up libcups2:amd64 (2.1.4-4) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up po-debconf (1.0.19) ... Setting up libxmu6:amd64 (2:1.1.2-2) ... Setting up libcupsfilters1:amd64 (1.10.0-1) ... Setting up libcupsimage2:amd64 (2.1.4-4) ... Setting up libgs9 (9.19~dfsg+1-0ubuntu1) ... Setting up libxi6:amd64 (2:1.7.6-1) ... Setting up libxaw7:amd64 (2:1.0.13-1) ... Setting up libcairo2:amd64 (1.14.6-1build1) ... Setting up texlive-binaries (2016.20160513.41080-4) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Processing triggers for sgml-base (1.28) ... Setting up sgml-data (2.0.10) ... Setting up docbook-xsl (1.79.1+dfsg-1) ... Processing triggers for tex-common (6.05) ... update-language: texlive-base not installed and configured, doing nothing! texlive-base is not ready, skipping fmtutil --all call Setting up texlive-base (2016.20160623-1) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Processing triggers for tex-common (6.05) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up texlive-latex-base (2016.20160623-1) ... Setting up texlive-luatex (2016.20160623-1) ... Setting up texlive-fonts-recommended (2016.20160623-1) ... Processing triggers for sgml-base (1.28) ... Setting up docbook-xml (4.5-7.3) ... Processing triggers for tex-common (6.05) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up texlive-bibtex-extra (2016.20160623-1) ... Setting up texlive-math-extra (2016.20160623-1) ... Setting up texlive-latex-recommended (2016.20160623-1) ... Setting up texlive-extra-utils (2016.20160623-1) ... Setting up texlive-pictures (2016.20160623-1) ... Setting up texlive (2016.20160623-1) ... Processing triggers for tex-common (6.05) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up texlive-latex-extra (2016.20160623-1) ... Processing triggers for tex-common (6.05) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Processing triggers for sgml-base (1.28) ... Setting up dblatex (0.3.7-1) ... Setting up dh-autoreconf (12) ... Setting up dh-strip-nondeterminism (0.022-1) ... Setting up debhelper (9.20160709ubuntu1) ... Setting up sbuild-build-depends-mira-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Processing triggers for systemd (231-1) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.13.0-92-generic amd64 (x86_64) Toolchain package versions: binutils_2.26.1-1ubuntu2 dpkg-dev_1.18.9ubuntu2 g++-5_5.4.0-6ubuntu1 g++-6_6.1.1-11ubuntu11 gcc-5_5.4.0-6ubuntu1 gcc-6_6.1.1-11ubuntu11 libc6-dev_2.23-1ubuntu1 libstdc++-5-dev_5.4.0-6ubuntu1 libstdc++-6-dev_6.1.1-11ubuntu11 libstdc++6_6.1.1-11ubuntu11 linux-libc-dev_4.4.0-34.53 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.3~pre2ubuntu4 apt-transport-https_1.3~pre2ubuntu4 autoconf_2.69-10 autoconf-archive_20150925-1 automake_1:1.15-4ubuntu1 autopoint_0.19.7-2ubuntu3 autotools-dev_20160430.1 base-files_9.6ubuntu2 base-passwd_3.5.39 bash_4.3-15ubuntu1 binutils_2.26.1-1ubuntu2 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.28-5ubuntu2 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20160104ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:6.1.1-1ubuntu2 cpp-5_5.4.0-6ubuntu1 cpp-6_6.1.1-11ubuntu11 dash_0.5.8-2.3ubuntu1 dblatex_0.3.7-1 debconf_1.5.59ubuntu1 debhelper_9.20160709ubuntu1 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.022-1 diffutils_1:3.3-3 dmsetup_2:1.02.130-1ubuntu1 docbook-xml_4.5-7.3 docbook-xsl_1.79.1+dfsg-1 dpkg_1.18.9ubuntu2 dpkg-dev_1.18.9ubuntu2 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 fakeroot_1.20.2-1ubuntu1 file_1:5.28-2ubuntu1 findutils_4.6.0+git+20160703-2 flex_2.6.1-1 fontconfig-config_2.11.94-0ubuntu1 fonts-dejavu-core_2.36-1 g++_4:6.1.1-1ubuntu2 g++-5_5.4.0-6ubuntu1 g++-6_6.1.1-11ubuntu11 gcc_4:6.1.1-1ubuntu2 gcc-5_5.4.0-6ubuntu1 gcc-5-base_5.4.0-6ubuntu1 gcc-6_6.1.1-11ubuntu11 gcc-6-base_6.1.1-11ubuntu11 gettext_0.19.7-2ubuntu3 gettext-base_0.19.7-2ubuntu3 gnupg_1.4.20-1ubuntu3 gpgv_1.4.20-1ubuntu3 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-4ubuntu1 hostname_3.18 icu-devtools_57.1-1.1 init_1.42 init-system-helpers_1.42 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-4ubuntu3 libapt-inst2.0_1.3~pre2ubuntu4 libapt-pkg5.0_1.3~pre2ubuntu4 libarchive-zip-perl_1.58-1 libasan2_5.4.0-6ubuntu1 libasan3_6.1.1-11ubuntu11 libasn1-8-heimdal_1.7~git20160703+dfsg-1 libasprintf0v5_0.19.7-2ubuntu3 libatomic1_6.1.1-11ubuntu11 libattr1_1:2.4.47-2 libaudit-common_1:2.6.5-1ubuntu1 libaudit1_1:2.6.5-1ubuntu1 libavahi-client3_0.6.32-1ubuntu1 libavahi-common-data_0.6.32-1ubuntu1 libavahi-common3_0.6.32-1ubuntu1 libblkid1_2.28-5ubuntu2 libboost-atomic1.61-dev_1.61.0+dfsg-2.1 libboost-atomic1.61.0_1.61.0+dfsg-2.1 libboost-chrono1.61-dev_1.61.0+dfsg-2.1 libboost-chrono1.61.0_1.61.0+dfsg-2.1 libboost-date-time1.61-dev_1.61.0+dfsg-2.1 libboost-date-time1.61.0_1.61.0+dfsg-2.1 libboost-filesystem-dev_1.61.0.0ubuntu1 libboost-filesystem1.61-dev_1.61.0+dfsg-2.1 libboost-filesystem1.61.0_1.61.0+dfsg-2.1 libboost-iostreams-dev_1.61.0.0ubuntu1 libboost-iostreams1.61-dev_1.61.0+dfsg-2.1 libboost-iostreams1.61.0_1.61.0+dfsg-2.1 libboost-regex-dev_1.61.0.0ubuntu1 libboost-regex1.61-dev_1.61.0+dfsg-2.1 libboost-regex1.61.0_1.61.0+dfsg-2.1 libboost-serialization1.61-dev_1.61.0+dfsg-2.1 libboost-serialization1.61.0_1.61.0+dfsg-2.1 libboost-system-dev_1.61.0.0ubuntu1 libboost-system1.61-dev_1.61.0+dfsg-2.1 libboost-system1.61.0_1.61.0+dfsg-2.1 libboost-thread-dev_1.61.0.0ubuntu1 libboost-thread1.61-dev_1.61.0+dfsg-2.1 libboost-thread1.61.0_1.61.0+dfsg-2.1 libboost1.61-dev_1.61.0+dfsg-2.1 libbz2-1.0_1.0.6-8build1 libbz2-dev_1.0.6-8build1 libc-bin_2.23-1ubuntu1 libc-dev-bin_2.23-1ubuntu1 libc6_2.23-1ubuntu1 libc6-dev_2.23-1ubuntu1 libcairo2_1.14.6-1build1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.1.1-11ubuntu11 libcilkrts5_6.1.1-11ubuntu11 libcomerr2_1.43.1-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.2-0ubuntu1 libcups2_2.1.4-4 libcupsfilters1_1.10.0-1 libcupsimage2_2.1.4-4 libcurl3-gnutls_7.50.1-1ubuntu1 libdb5.3_5.3.28-12 libdbus-1-3_1.10.6-1ubuntu4 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.130-1ubuntu1 libdpkg-perl_1.18.9ubuntu2 libexpat1_2.2.0-1 libexpat1-dev_2.2.0-1 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.28-5ubuntu2 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.022-1 libfl-dev_2.6.1-1 libfontconfig1_2.11.94-0ubuntu1 libfreetype6_2.6.3-3ubuntu1 libgcc-5-dev_5.4.0-6ubuntu1 libgcc-6-dev_6.1.1-11ubuntu11 libgcc1_1:6.1.1-11ubuntu11 libgcrypt20_1.7.2-2 libgdbm3_1.8.3-14 libglib2.0-0_2.49.2-2 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.4.14-1ubuntu1 libgomp1_6.1.1-11ubuntu11 libgoogle-perftools-dev_2.4-0ubuntu5 libgoogle-perftools4_2.4-0ubuntu5 libgpg-error0_1.24-1 libgraphite2-3_1.3.8-1ubuntu1 libgs9_9.19~dfsg+1-0ubuntu1 libgs9-common_9.19~dfsg+1-0ubuntu1 libgssapi-krb5-2_1.14.2+dfsg-1ubuntu1 libgssapi3-heimdal_1.7~git20160703+dfsg-1 libharfbuzz-icu0_1.2.7-1 libharfbuzz0b_1.2.7-1 libhcrypto4-heimdal_1.7~git20160703+dfsg-1 libheimbase1-heimdal_1.7~git20160703+dfsg-1 libheimntlm0-heimdal_1.7~git20160703+dfsg-1 libhogweed4_3.2-1 libhx509-5-heimdal_1.7~git20160703+dfsg-1 libice6_2:1.0.9-1 libicu-dev_57.1-1.1 libicu57_57.1-1.1 libidn11_1.33-1 libijs-0.35_0.35-12 libisl15_0.17.1-1 libitm1_6.1.1-11ubuntu11 libjbig0_2.1-3.1 libjbig2dec0_0.13-2 libjpeg-turbo8_1.5.0-0ubuntu1 libjpeg8_8c-2ubuntu8 libjs-jquery_1.12.4-1 libk5crypto3_1.14.2+dfsg-1ubuntu1 libkeyutils1_1.5.9-9ubuntu1 libkmod2_22-1.1ubuntu1 libkpathsea6_2016.20160513.41080-4 libkrb5-26-heimdal_1.7~git20160703+dfsg-1 libkrb5-3_1.14.2+dfsg-1ubuntu1 libkrb5support0_1.14.2+dfsg-1ubuntu1 liblcms2-2_2.7-1ubuntu1 libldap-2.4-2_2.4.42+dfsg-2ubuntu4 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblsan0_6.1.1-11ubuntu11 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.1.1alpha+20120614-2.1ubuntu1 libmagic1_1:5.28-2ubuntu1 libmount1_2.28-5ubuntu2 libmpc3_1.0.3-1 libmpfr4_3.1.4-2 libmpx0_5.4.0-6ubuntu1 libmpx2_6.1.1-11ubuntu11 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.2-1 libnspr4_2:4.12-2ubuntu1 libnss3_2:3.25-1ubuntu1 libp11-kit0_0.23.2-4 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpaper-utils_1.1.24+nmu4ubuntu1 libpaper1_1.1.24+nmu4ubuntu1 libpcre3_2:8.39-1 libperl5.22_5.22.2-3 libpipeline1_1.4.1-2 libpixman-1-0_0.33.6-1 libpng12-0_1.2.54-1ubuntu1 libpng16-16_1.6.23-1 libpoppler61_0.44.0-3ubuntu2 libpotrace0_1.13-2 libprocps4_2:3.3.10-4ubuntu2 libprocps6_2:3.3.12-1ubuntu2 libptexenc1_2016.20160513.41080-4 libpython-stdlib_2.7.11-2 libpython2.7-minimal_2.7.12-1ubuntu1 libpython2.7-stdlib_2.7.12-1ubuntu1 libquadmath0_6.1.1-11ubuntu11 libreadline6_6.3-8ubuntu2 libroken18-heimdal_1.7~git20160703+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2ubuntu2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.28-5ubuntu2 libsqlite3-0_3.13.0-1 libss2_1.43.1-1 libssl1.0.0_1.0.2g-1ubuntu7 libstdc++-5-dev_5.4.0-6ubuntu1 libstdc++-6-dev_6.1.1-11ubuntu11 libstdc++6_6.1.1-11ubuntu11 libsynctex1_2016.20160513.41080-4 libsystemd0_231-1 libtasn1-6_4.8-1 libtcmalloc-minimal4_2.4-0ubuntu5 libtexlua52_2016.20160513.41080-4 libtexluajit2_2016.20160513.41080-4 libtiff5_4.0.6-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-1 libtsan0_6.1.1-11ubuntu11 libubsan0_6.1.1-11ubuntu11 libudev1_231-1 libunistring0_0.9.3-5.2ubuntu1 libunwind-dev_1.1-4.1 libunwind8_1.1-4.1 libunwind8-dev_1.1-4.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-5ubuntu2 libwind0-heimdal_1.7~git20160703+dfsg-1 libx11-6_2:1.6.3-1ubuntu3 libx11-data_2:1.6.3-1ubuntu3 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1 libxcb-render0_1.11.1-1ubuntu1 libxcb-shm0_1.11.1-1ubuntu1 libxcb1_1.11.1-1ubuntu1 libxdmcp6_1:1.1.2-1.1 libxext6_2:1.3.3-1 libxi6_2:1.7.6-1 libxml2_2.9.4+dfsg1-1 libxmu6_2:1.1.2-2 libxpm4_1:3.5.11-1 libxrender1_1:0.9.9-2 libxslt1.1_1.1.28-4 libxt6_1:1.1.5-1 libzzip-0-13_0.13.62-3 linux-libc-dev_4.4.0-34.53 lockfile-progs_0.1.17 login_1:4.2-3.1ubuntu6 lsb-base_9.20160110ubuntu5 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mime-support_3.60ubuntu1 mount_2.28-5ubuntu2 multiarch-support_2.23-1ubuntu1 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu7 optipng_0.7.6-1build1 passwd_1:4.2-3.1ubuntu6 patch_2.7.5-1 perl_5.22.2-3 perl-base_5.22.2-3 perl-modules-5.22_5.22.2-3 pkg-create-dbgsym_0.72 pkgbinarymangler_130 po-debconf_1.0.19 policyrcd-script-zg2_0.1-3 poppler-data_0.4.7-7 preview-latex-style_11.88-1.1ubuntu1 procps_2:3.3.12-1ubuntu2 python_2.7.11-2 python-apt_1.1.0~beta4ubuntu1 python-apt-common_1.1.0~beta4ubuntu1 python-minimal_2.7.11-2 python2.7_2.7.12-1ubuntu1 python2.7-minimal_2.7.12-1ubuntu1 readline-common_6.3-8ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mira-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 sgml-base_1.28 sgml-data_2.0.10 systemd_231-1 systemd-sysv_231-1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 t1utils_1.39-2 tar_1.29b-1 tex-common_6.05 texlive_2016.20160623-1 texlive-base_2016.20160623-1 texlive-bibtex-extra_2016.20160623-1 texlive-binaries_2016.20160513.41080-4 texlive-extra-utils_2016.20160623-1 texlive-fonts-recommended_2016.20160623-1 texlive-latex-base_2016.20160623-1 texlive-latex-extra_2016.20160623-1 texlive-latex-recommended_2016.20160623-1 texlive-luatex_2016.20160623-1 texlive-math-extra_2016.20160623-1 texlive-pictures_2016.20160623-1 tzdata_2016f-1 ubuntu-keyring_2016.05.13 ucf_3.0036 util-linux_2.28-5ubuntu2 vim-common_2:7.4.1829-1ubuntu2 x11-common_1:7.7+13ubuntu3 xdg-utils_1.1.1-1ubuntu1 xml-core_0.13+nmu2 xsltproc_1.1.28-4 xz-utils_5.1.1alpha+20120614-2.1ubuntu1 zlib1g_1:1.2.8.dfsg-2ubuntu5 zlib1g-dev_1:1.2.8.dfsg-2ubuntu5 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Thu Aug 4 08:51:58 2016 UTC using RSA key ID 778FA6F5 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./mira_4.9.6-1build1.dsc dpkg-source: info: extracting mira in mira-4.9.6 dpkg-source: info: unpacking mira_4.9.6.orig.tar.bz2 dpkg-source: info: unpacking mira_4.9.6-1build1.debian.tar.xz dpkg-source: info: applying spelling.patch dpkg-source: info: applying sls-rrna-fix dpkg-source: info: applying man-directory Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: info: source package mira dpkg-buildpackage: info: source version 4.9.6-1build1 dpkg-buildpackage: info: source distribution yakkety dpkg-source --before-build mira-4.9.6 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with autoreconf --parallel dh_testdir -O--parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/«PKGBUILDDIR»' ( cd doc ; make clean ) || true make[2]: Entering directory '/«PKGBUILDDIR»/doc' cd .. && make am--refresh make[3]: *** No rule to make target 'am--refresh'. Stop. make[3]: Entering directory '/«PKGBUILDDIR»' make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: *** [../config.status] Error 2 Makefile:263: recipe for target '../config.status' failed make[2]: Leaving directory '/«PKGBUILDDIR»/doc' dh_auto_clean || true find * -name Makefile -exec rm '{}' ';' find * -name '*.xxd.H' -exec rm '{}' ';' find * -name '*.par.H' -exec rm '{}' ';' find * -name 'compileinfo.*' -exec rm '{}' ';' make[1]: Leaving directory '/«PKGBUILDDIR»' dh_autoreconf_clean -O--parallel dh_clean -O--parallel rm -f debian/debhelper-build-stamp rm -f debian/mira-assembler.substvars rm -f debian/mira-assembler.*.debhelper rm -rf debian/mira-assembler/ rm -f debian/mira-rfam-12s-rrna.substvars rm -f debian/mira-rfam-12s-rrna.*.debhelper rm -rf debian/mira-rfam-12s-rrna/ rm -f debian/mira-doc.substvars rm -f debian/mira-doc.*.debhelper rm -rf debian/mira-doc/ rm -rf debian/.debhelper/ rm -f debian/*.debhelper.log rm -f debian/files rm -f -- src/io/so.obo.xxd find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f *-stamp debian/rules build dh build --with autoreconf --parallel dh_testdir -O--parallel dh_update_autotools_config -O--parallel install -d debian/.debhelper/bucket/files cp -an --reflink=auto config.guess debian/.debhelper/bucket/files/9be3de218833c076786b919dc34aab691611f4cd73316e7705f2673e2c41921b.tmp mv -f debian/.debhelper/bucket/files/9be3de218833c076786b919dc34aab691611f4cd73316e7705f2673e2c41921b.tmp debian/.debhelper/bucket/files/9be3de218833c076786b919dc34aab691611f4cd73316e7705f2673e2c41921b cp -f /usr/share/misc/config.guess ./config.guess cp -an --reflink=auto config.sub debian/.debhelper/bucket/files/e308ae7f7f524bd790f8d4457c7c0a30f8403ffff4dd0b7d4388daca24275db4.tmp mv -f debian/.debhelper/bucket/files/e308ae7f7f524bd790f8d4457c7c0a30f8403ffff4dd0b7d4388daca24275db4.tmp debian/.debhelper/bucket/files/e308ae7f7f524bd790f8d4457c7c0a30f8403ffff4dd0b7d4388daca24275db4 cp -f /usr/share/misc/config.sub ./config.sub dh_autoreconf -O--parallel find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} \; > debian/autoreconf.before autoreconf -f -i libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:103: installing './compile' configure.ac:9: installing './missing' doc/docbook/Makefile.am:22: warning: '%'-style pattern rules are a GNU make extension src/caf/Makefile.am: installing './depcomp' src/io/Makefile.am:12: warning: '%'-style pattern rules are a GNU make extension src/mira/Makefile.am:10: warning: '%'-style pattern rules are a GNU make extension find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} \; > debian/autoreconf.after dh_auto_configure -O--parallel ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '2001' is supported by ustar format... yes checking whether GID '2501' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking for a sed that does not truncate output... /bin/sed checking whether to add --prefix as include path... yes +++++++++++++++++++++++++++++++++++++ systemuname: Linux CFLAGS now: -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include CXXFLAGS now: -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking for OpenMP flag of C compiler... -fopenmp Rescuing C++ flags for OpenMP +++++++++++++++++++++++++++++++++++++ OpenMP CFLAGS: -fopenmp OpenMP CXXFLAGS: -fopenmp +++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ systemuname: Linux CFLAGS now: -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include CXXFLAGS now: -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for int64_t... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include CXXFLAGS now: -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking whether long has 64bit... yes checking whether enabling 64bit compilation support... yes checking build system type... x86_64-pc-linux-gnu checking for compiler optimisation settings... -O3 -funroll-loops +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops CXXFLAGS now: -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether make sets $(MAKE)... (cached) yes checking whether ln -s works... yes checking for flex... yes checking for flex... flex checking lex output file root... lex.yy checking lex library... -lfl checking whether yytext is a pointer... yes checking for flex++... yes checking for xxd... yes checking for ANSI C header files... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for C/C++ restrict keyword... __restrict checking whether struct tm is in sys/time.h or time.h... time.h checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking whether lstat correctly handles trailing slash... yes checking whether stat accepts an empty string... no checking for strftime... yes checking for floor... no checking for memset... yes checking for pow... no checking for sqrt... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking for isblank... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops CXXFLAGS now: -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking for boostlib >= 1.48.0... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -I/usr/include BOOST LDFLAGS: -L/usr/lib/x86_64-linux-gnu ac_boost_path: ac_boost_lib_path: CFLAGS now: -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops CXXFLAGS now: -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -I/usr/include BOOST LDFLAGS: -L/usr/lib/x86_64-linux-gnu CFLAGS now: -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -Wl,-rpath, CXXFLAGS now: -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking whether the Boost::Thread library is available... yes checking for exit in -lboost_thread... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/x86_64-linux-gnu ac_boost_path: ac_boost_lib_path: BOOST_THREAD_LIB: -lboost_thread CFLAGS now: -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -Wl,-rpath, CXXFLAGS now: -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/lib +++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/x86_64-linux-gnu ac_boost_path: ac_boost_lib_path: BOOST_THREAD_LIB: -lboost_thread CFLAGS now: -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -Wl,-rpath, CXXFLAGS now: -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/x86_64-linux-gnu LIBS now: -lboost_thread +++++++++++++++++++++++++++++++++++++ checking whether the Boost::Regex library is available... yes checking for exit in -lboost_regex... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/x86_64-linux-gnu ac_boost_path: ac_boost_lib_path: BOOST_REGEX_LIB: -lboost_regex CFLAGS now: -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -Wl,-rpath, CXXFLAGS now: -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex +++++++++++++++++++++++++++++++++++++ checking whether the Boost::System library is available... yes checking for exit in -lboost_system... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/x86_64-linux-gnu ac_boost_path: ac_boost_lib_path: BOOST_SYSTEM_LIB: -lboost_system CFLAGS now: -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -Wl,-rpath, CXXFLAGS now: -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex -lboost_system +++++++++++++++++++++++++++++++++++++ checking whether the Boost::Filesystem library is available... yes checking for exit in -lboost_filesystem... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/x86_64-linux-gnu ac_boost_path: ac_boost_lib_path: BOOST_FILESYSTEM_LIB: -lboost_filesystem CFLAGS now: -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -Wl,-rpath, CXXFLAGS now: -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem +++++++++++++++++++++++++++++++++++++ checking whether the Boost::IOStreams library is available... yes checking for exit in -lboost_iostreams... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/x86_64-linux-gnu ac_boost_path: ac_boost_lib_path: BOOST_IOSTREAMS_LIB: -lboost_iostreams CFLAGS now: -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -Wl,-rpath, CXXFLAGS now: -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams +++++++++++++++++++++++++++++++++++++ checking for clock_gettime in -lrt... yes +++++++++++++++++++++++++++++++++++++ Need to specifically use rt library LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt +++++++++++++++++++++++++++++++++++++ BOOST is through, yay. +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops CXXFLAGS now: -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/x86_64-linux-gnu LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt +++++++++++++++++++++++++++++++++++++ checking for Expat XML Parser headers in /usr/include... found checking for Expat XML Parser libraries... found checking for Expat XML Parser... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -I/usr/include CXXFLAGS now: -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat +++++++++++++++++++++++++++++++++++++ checking if zlib is wanted... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -I/usr/include CXXFLAGS now: -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz +++++++++++++++++++++++++++++++++++++ checking for gzoffset in -lz... yes checking for BZ2_bzRead in -lbz2... yes checking for flex version compatible with MIRA... yes checking for profiling settings... no checking for purify... no checking whether mira should compile in public quiet mode... yes checking whether mira should compile with bound tracking... yes checking whether mira should compile with bug tracking... yes checking whether mira should compile with extended bug tracking... no checking whether mira should compile with function trace... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/other/Makefile config.status: creating src/other/sls/Makefile config.status: creating src/other/sls/mira-createsls/Makefile config.status: creating src/other/sls/mira-createsls/bin/Makefile config.status: creating src/stdinc/Makefile config.status: creating src/debuggersupport/Makefile config.status: creating src/memorc/Makefile config.status: creating src/errorhandling/Makefile config.status: creating src/util/Makefile config.status: creating src/io/Makefile config.status: creating src/mira/Makefile config.status: creating src/caf/Makefile config.status: creating src/support/Makefile config.status: creating src/scripts/Makefile config.status: creating src/modules/Makefile config.status: creating src/version/Makefile config.status: creating src/progs/Makefile config.status: creating man/Makefile config.status: creating doc/Makefile config.status: creating doc/docbook/Makefile config.status: creating distribution/Makefile config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode -------------------------------------------------------------------------------- Summary of MIRA configuration -------------------------------------------------------------------------------- Building version ................................. 4.9.6_linux-gnu_x86_64_dynamic We are building on ............................... Linux CPU supports 64 bit? ............................. yes Compiler family .................................. gcc Compiler optimisation flags used ................. -O3 -funroll-loops Do we compile in 64 bit? ......................... yes Building completely static? ...................... no BOOST expected to compile and link? .............. yes Have OpenMP? ..................................... yes Have complete zlib support? ...................... yes Can MIRA be built on this system? ................ yes Using CFLAGS : -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -I/usr/include -Werror=uninitialized -Werror=return-type -fopenmp Using CXXFLAGS : -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp Using LDFLAGS : -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib Using LIBS : -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 Looks good, we do not expect compilation problems. -------------------------------------------------------------------------------- Type 'make' to make the binaries and then 'make install' to install binaries and man pages. Type 'make docinstall' to install extensive documentation as HTML and PDF. debian/rules override_dh_auto_build-arch make[1]: Entering directory '/«PKGBUILDDIR»' # some *.cc files are created by old flex version which breaks the build # see bug #812681 find -name '*.ll' | sed -e 's/[.]ll$/.cc/' | xargs rm dh_auto_build make -j4 make[2]: Entering directory '/«PKGBUILDDIR»' make all-recursive make[3]: Entering directory '/«PKGBUILDDIR»' Making all in man make[4]: Entering directory '/«PKGBUILDDIR»/man' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/«PKGBUILDDIR»/man' Making all in src make[4]: Entering directory '/«PKGBUILDDIR»/src' Making all in debuggersupport make[5]: Entering directory '/«PKGBUILDDIR»/src/debuggersupport' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o dbgsupport.o dbgsupport.C rm -f libmiradebuggersupport.a ar cru libmiradebuggersupport.a dbgsupport.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiradebuggersupport.a make[5]: Leaving directory '/«PKGBUILDDIR»/src/debuggersupport' Making all in io make[5]: Entering directory '/«PKGBUILDDIR»/src/io' Making .H out of .xxd mira_ft_set.xxd.H Making .H out of .xxd gap4_ft_so_map.xxd.H Reducing so.obo for smaller so.obo.xxd Making .H out of .xxd so2xgap4map.xxd.H Making .H out of .xxd oldso2so.xxd.H Making .H out of .xxd so.obo.xxd.H make all-am make[6]: Entering directory '/«PKGBUILDDIR»/src/io' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o annotationmappings.o annotationmappings.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o exp.o exp.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o generalio.o generalio.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o fasta.o fasta.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o fastq-mira.o fastq-mira.C In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from ../../src/io/fastq-mira.H:31, from fastq-mira.C:26: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from ../../src/io/fastq-mira.H:31, from fastq-mira.C:26: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from ../../src/io/fastq-mira.H:31, from fastq-mira.C:26: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o phd.o phd.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o scf.o scf.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o ncbiinfoxml.o ncbiinfoxml.C /bin/bash ../../ylwrap exp_flexer.ll lex.yy.c exp_flexer.cc -- flex g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o exp_flexer.o exp_flexer.cc rm -f libmirafio.a ar cru libmirafio.a annotationmappings.o exp.o generalio.o fasta.o fastq-mira.o phd.o scf.o ncbiinfoxml.o exp_flexer.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmirafio.a make[6]: Leaving directory '/«PKGBUILDDIR»/src/io' make[5]: Leaving directory '/«PKGBUILDDIR»/src/io' Making all in stdinc make[5]: Entering directory '/«PKGBUILDDIR»/src/stdinc' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/stdinc' Making all in errorhandling make[5]: Entering directory '/«PKGBUILDDIR»/src/errorhandling' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o errorhandling.o errorhandling.C rm -f libmiraerrorhandling.a ar cru libmiraerrorhandling.a errorhandling.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiraerrorhandling.a make[5]: Leaving directory '/«PKGBUILDDIR»/src/errorhandling' Making all in util make[5]: Entering directory '/«PKGBUILDDIR»/src/util' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o machineinfo.o machineinfo.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o fileanddisk.o fileanddisk.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o misc.o misc.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o dptools.o dptools.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o fmttext.o fmttext.C rm -f libmirafmttext.a ar cru libmirafmttext.a fmttext.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmirafmttext.a rm -f libmiradptools.a ar cru libmiradptools.a dptools.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiradptools.a fileanddisk.C: In function ‘int64 myGZRead(gzFile_s*&, void*, uint64)’: fileanddisk.C:173:28: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] strerror_r(errno,buf,1024); ^ rm -f libmirautil.a ar cru libmirautil.a machineinfo.o fileanddisk.o misc.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmirautil.a make[5]: Leaving directory '/«PKGBUILDDIR»/src/util' Making all in mira make[5]: Entering directory '/«PKGBUILDDIR»/src/mira' Making .H out of .xxd adaptorsforclip.solexa.xxd.H Making .H out of .xxd adaptorsforclip.454.xxd.H Making .H out of .xxd adaptorsforclip.iontor.xxd.H Making .H out of .xxd adaptorsregex.solexa.xxd.H Making .H out of .xxd adaptorsregex.iontor.xxd.H Making .H out of .xxd seqforfilter_phix174.solexa.xxd.H make all-am make[6]: Entering directory '/«PKGBUILDDIR»/src/mira' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o estassembly.o estassembly.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o hashstats_sdbg.o hashstats_sdbg.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o hashstats.o hashstats.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o skim.o skim.C hashstats.C:1088:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} hashstats.C:83:0: note: this is the location of the previous definition #define CEBUG(bla) hashstats.C:1197:0: warning: "CEBUG" redefined #define CEBUG(bla) hashstats.C:1088:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly.o assembly.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig.o contig.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o read.o read.C read.C: In member function ‘void Read::dumpAsReadname(std::ostream&)’: read.C:1242:33: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function ‘void Read::dumpAsFASTA(std::ostream&, bool, bool, bool)’: read.C:1273:33: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function ‘void Read::dumpAsFASTQ(std::ostream&, bool, bool, bool)’: read.C:1357:33: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function ‘void Read::dumpAsFASTAQual(std::ostream&, bool, bool, bool)’: read.C:1458:33: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function ‘void Read::dumpAsCAF(std::ostream&)’: read.C:1530:33: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function ‘void Read::dumpAsMAF(std::ostream&)’: read.C:1945:33: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] sprintf(buffer, "%x", this) ; ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_analysis.o contig_analysis.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o ads.o ads.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o adsfacts.o adsfacts.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o align.o align.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_info.o assembly_info.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_buildcontigs.o assembly_buildcontigs.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_io.o assembly_io.C assembly_buildcontigs.C:80:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush(); } assembly_buildcontigs.C:55:0: note: this is the location of the previous definition #define CEBUG(bla) assembly_buildcontigs.C:1251:0: warning: "CEBUG" redefined #define CEBUG(bla) assembly_buildcontigs.C:80:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush(); } assembly_buildcontigs.C:1332:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush(); } assembly_buildcontigs.C:1251:0: note: this is the location of the previous definition #define CEBUG(bla) assembly_buildcontigs.C:1485:0: warning: "CEBUG" redefined #define CEBUG(bla) assembly_buildcontigs.C:1332:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush(); } assembly_buildcontigs.C:1496:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush(); } assembly_buildcontigs.C:1485:0: note: this is the location of the previous definition #define CEBUG(bla) assembly_buildcontigs.C:1621:0: warning: "CEBUG" redefined #define CEBUG(bla) assembly_buildcontigs.C:1496:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush(); } assembly_buildcontigs.C:2304:0: warning: "VCOUT" redefined #define VCOUT(bla) assembly_buildcontigs.C:2043:0: note: this is the location of the previous definition #define VCOUT(bla) {if(verbose) {cout << bla;} } g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_misc.o assembly_misc.C assembly_misc.C:1871:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} assembly_misc.C:55:0: note: this is the location of the previous definition #define CEBUG(bla) assembly_misc.C:1905:0: warning: "CEBUG" redefined #define CEBUG(bla) assembly_misc.C:1871:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_output.o assembly_output.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_pbcorrect.o assembly_pbcorrect.C assembly_pbcorrect.C:59:0: warning: "CEBUG" redefined #define CEBUG(bla) { if(docebug) {cout << bla; cout.flush();}} assembly_pbcorrect.C:45:0: note: this is the location of the previous definition #define CEBUG(bla) g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_reduceskimhits.o assembly_reduceskimhits.C assembly_reduceskimhits.C:1111:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} assembly_reduceskimhits.C:878:0: note: this is the location of the previous definition #define CEBUG(bla) assembly_reduceskimhits.C:1151:0: warning: "CEBUG" redefined #define CEBUG(bla) assembly_reduceskimhits.C:1111:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} assembly_reduceskimhits.C:2742:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} assembly_reduceskimhits.C:1151:0: note: this is the location of the previous definition #define CEBUG(bla) assembly_reduceskimhits.C:2760:0: warning: "CEBUG" redefined #define CEBUG(bla) assembly_reduceskimhits.C:2742:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} assembly_reduceskimhits.C:2764:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} assembly_reduceskimhits.C:2760:0: note: this is the location of the previous definition #define CEBUG(bla) assembly_reduceskimhits.C:2803:0: warning: "CEBUG" redefined #define CEBUG(bla) assembly_reduceskimhits.C:2764:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} assembly_reduceskimhits.C:2808:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} assembly_reduceskimhits.C:2803:0: note: this is the location of the previous definition #define CEBUG(bla) assembly_reduceskimhits.C:2887:0: warning: "CEBUG" redefined #define CEBUG(bla) assembly_reduceskimhits.C:2808:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_swalign.o assembly_swalign.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_consensus.o contig_consensus.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_covanalysis.o contig_covanalysis.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_edit.o contig_edit.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_featureinfo.o contig_featureinfo.C contig_featureinfo.C:512:0: warning: "CEBUGF2" redefined #define CEBUGF2 contig_featureinfo.C:473:0: note: this is the location of the previous definition #define CEBUGF2(bla) g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_output.o contig_output.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_pairconsistency.o contig_pairconsistency.C contig_pairconsistency.C:313:0: warning: "CEBUG" redefined #define CEBUG(bla) contig_pairconsistency.C:34:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} contig_pairconsistency.C:315:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} contig_pairconsistency.C:313:0: note: this is the location of the previous definition #define CEBUG(bla) contig_pairconsistency.C:399:0: warning: "CEBUG" redefined #define CEBUG(bla) contig_pairconsistency.C:315:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o dataprocessing.o dataprocessing.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o dynamic.o dynamic.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o gbf_parse.o gbf_parse.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o gff_parse.o gff_parse.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o gff_save.o gff_save.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o maf_parse.o maf_parse.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o manifest.o manifest.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o multitag.o multitag.C /bin/bash ../../ylwrap parameters_flexer.ll lex.yy.c parameters_flexer.cc -- flex g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o parameters.o parameters.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o pcrcontainer.o pcrcontainer.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o ppathfinder.o ppathfinder.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o preventinitfiasco.o preventinitfiasco.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o readgrouplib.o readgrouplib.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o readlotstat.o readlotstat.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o readpool.o readpool.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o readpool_io.o readpool_io.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o sam_collect.o sam_collect.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o scaffolder.o scaffolder.C scaffolder.C:203:0: warning: "CEBUG" redefined #define CEBUG(bla) scaffolder.C:84:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush(); } g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o seqtohash.o seqtohash.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o simplebloomfilter.o simplebloomfilter.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o skim_lowbph.o skim_lowbph.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o warnings.o warnings.C rm -f libmiraestass.a ar cru libmiraestass.a estassembly.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiraestass.a g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o parameters_flexer.o parameters_flexer.cc rm -f libmira.a ar cru libmira.a hashstats_sdbg.o hashstats.o skim.o assembly.o contig.o read.o contig_analysis.o ads.o adsfacts.o align.o assembly_info.o assembly_buildcontigs.o assembly_io.o assembly_misc.o assembly_output.o assembly_pbcorrect.o assembly_reduceskimhits.o assembly_swalign.o contig_consensus.o contig_covanalysis.o contig_edit.o contig_featureinfo.o contig_output.o contig_pairconsistency.o dataprocessing.o dynamic.o gbf_parse.o gff_parse.o gff_save.o maf_parse.o manifest.o multitag.o parameters_flexer.o parameters.o pcrcontainer.o ppathfinder.o preventinitfiasco.o readgrouplib.o readlotstat.o readpool.o readpool_io.o sam_collect.o scaffolder.o seqtohash.o simplebloomfilter.o skim_lowbph.o warnings.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmira.a make[6]: Leaving directory '/«PKGBUILDDIR»/src/mira' make[5]: Leaving directory '/«PKGBUILDDIR»/src/mira' Making all in caf make[5]: Entering directory '/«PKGBUILDDIR»/src/caf' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o caf.o caf.C /bin/bash ../../ylwrap caf_flexer.ll lex.yy.c caf_flexer.cc -- flex g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o caf_flexer.o caf_flexer.cc rm -f libmiracaf.a ar cru libmiracaf.a caf.o caf_flexer.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiracaf.a make[5]: Leaving directory '/«PKGBUILDDIR»/src/caf' Making all in memorc make[5]: Entering directory '/«PKGBUILDDIR»/src/memorc' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o memorc.o memorc.C memorc.C: In static member function ‘static void MemORC::statistics()’: memorc.C:153:61: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64 {aka long unsigned int}’ [-Wformat=] printf("Current alloc counter : %llu\n", MOC_alloccounter); ^ memorc.C:154:64: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64 {aka long unsigned int}’ [-Wformat=] printf("Total checks performed : %llu\n", MOC_checksperformed); ^ memorc.C:155:65: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘std::map::size_type {aka long unsigned int}’ [-Wformat=] printf("Num. memory blocks : %llu\n", MOC_memblocks.size()); ^ memorc.C:156:65: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘std::map::size_type {aka long unsigned int}’ [-Wformat=] printf("Num. active hot blocks : %llu\n", MOC_hotblocks.size()); ^ memorc.C:157:72: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘std::vector::size_type {aka long unsigned int}’ [-Wformat=] printf("Num. pending hot blocks: %llu\n", MOC_hotaidsrequested.size()); ^ memorc.C:158:60: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘size_t {aka long unsigned int}’ [-Wformat=] printf("Total mem reqested : %llu\n", MOC_reqmemalloc); ^ memorc.C:159:90: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘size_t {aka long unsigned int}’ [-Wformat=] printf("Total mem allocated : %llu (including pads and fences)\n", MOC_totalmemalloc); ^ memorc.C: In static member function ‘static void* MemORC::newMemBlock(size_t)’: memorc.C:225:116: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘size_t {aka long unsigned int}’ [-Wformat=] printf("Used malloc()\nTried to allocate %llu byte.\nSorry, memory allocation failed. Bailing out.\n", totaln); ^ memorc.C: In static member function ‘static void MemORC::deleteMemBlock(void*)’: memorc.C:311:112: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘uint64 {aka long unsigned int}’ [-Wformat=] printf("Nearest memblock above (%d):\t",reinterpret_cast(mbI->first)-reinterpret_cast(usraddr)); ^ memorc.C:318:113: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘uint64 {aka long unsigned int}’ [-Wformat=] printf("Nearest memblock below (-%d):\t",reinterpret_cast(usraddr)-reinterpret_cast(mbI->first)); ^ memorc.C: In static member function ‘static bool MemORC::checkMemBlock(std::map::iterator)’: memorc.C:430:134: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] printf("check: lower fence .0 destroyed at position: %d\tExpected: %x\tGot: %x\n", i*sizeof(int32),MOC_clowfencemagic[0], *fencecptr); ^ memorc.C:433:136: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] printf("check: lower fence .1 destroyed at position: %d\tExpected: %x\tGot: %x\n", i*sizeof(int32)+1,MOC_clowfencemagic[1], *fencecptr); ^ memorc.C:436:136: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] printf("check: lower fence .2 destroyed at position: %d\tExpected: %x\tGot: %x\n", i*sizeof(int32)+2,MOC_clowfencemagic[2], *fencecptr); ^ memorc.C:439:136: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] printf("check: lower fence .3 destroyed at position: %d\tExpected: %x\tGot: %x\n", i*sizeof(int32)+3,MOC_clowfencemagic[3], *fencecptr); ^ memorc.C:500:44: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘size_t {aka long unsigned int}’ [-Wformat=] printf("Size: %llu\n", mbI->second.size); ^ memorc.C:501:50: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64 {aka long unsigned int}’ [-Wformat=] printf("AllocID: %llu\n", mbI->second.allocid); ^ memorc.C: In static member function ‘static void MemORC::printMemBlockInfo(std::map::iterator)’: memorc.C:558:50: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘size_t {aka long unsigned int}’ [-Wformat=] printf("%p\t%llu\t",mbI->first,mbI->second.size); ^ memorc.C:564:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64 {aka long unsigned int}’ [-Wformat=] printf("\t%llu\n",mbI->second.allocid); ^ rm -f libmemorc.a g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o main.o main.C ar cru libmemorc.a memorc.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmemorc.a /bin/bash ../../libtool --tag=CXX --mode=link g++ -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf/ -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib -o main main.o -lmiraerrorhandling -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o main main.o -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf/ -L/usr/lib/x86_64-linux-gnu -L/usr/lib -lmiraerrorhandling -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/x86_64-linux-gnu/libexpat.so -lm -lz -lbz2 -fopenmp -pthread make[5]: Leaving directory '/«PKGBUILDDIR»/src/memorc' Making all in modules make[5]: Entering directory '/«PKGBUILDDIR»/src/modules' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_sigconex.o mod_sigconex.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_scaffold.o mod_scaffold.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_bait.o mod_bait.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_dbgreplay.o mod_dbgreplay.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_diff.o mod_diff.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_mer.o mod_mer.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_mira.o mod_mira.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_convert.o mod_convert.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_memestim.o mod_memestim.C mod_mira.C: In function ‘void miraMain_extractContigs(int, char**)’: mod_mira.C:414:19: warning: ignoring return value of ‘int chdir(const char*)’, declared with attribute warn_unused_result [-Wunused-result] chdir("../.."); ^ mod_mira.C:439:19: warning: ignoring return value of ‘int chdir(const char*)’, declared with attribute warn_unused_result [-Wunused-result] chdir("../.."); ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_tagsnp.o mod_tagsnp.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o misc.o misc.C rm -f libmiramodules.a ar cru libmiramodules.a mod_sigconex.o mod_scaffold.o mod_bait.o mod_dbgreplay.o mod_diff.o mod_mer.o mod_mira.o mod_convert.o mod_memestim.o mod_tagsnp.o misc.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiramodules.a make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules' Making all in support make[5]: Entering directory '/«PKGBUILDDIR»/src/support' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/support' Making all in scripts make[5]: Entering directory '/«PKGBUILDDIR»/src/scripts' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/scripts' Making all in version make[5]: Entering directory '/«PKGBUILDDIR»/src/version' make all-am make[6]: Entering directory '/«PKGBUILDDIR»/src/version' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mversion.o mversion.C rm -f libmiraversion.a ar cru libmiraversion.a mversion.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiraversion.a make[6]: Leaving directory '/«PKGBUILDDIR»/src/version' make[5]: Leaving directory '/«PKGBUILDDIR»/src/version' Making all in progs make[5]: Entering directory '/«PKGBUILDDIR»/src/progs' Making .C out of .xxd compileinfo.itxt make all-am make[6]: Entering directory '/«PKGBUILDDIR»/src/progs' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mira.o mira.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o quirks.o quirks.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o miratest.o miratest.C Making .C out of .xxd compileinfo.itxt g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o compileinfo.itxt.xxd.o compileinfo.itxt.xxd.C In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from ../../src/io/fastq-mira.H:31, from miratest.C:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from ../../src/io/fastq-mira.H:31, from miratest.C:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from ../../src/io/fastq-mira.H:31, from miratest.C:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ /bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib -o miratest miratest.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o miratest miratest.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/x86_64-linux-gnu -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/x86_64-linux-gnu/libexpat.so -lm -lz -lbz2 -fopenmp -pthread /bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib -o mira mira.o quirks.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o mira mira.o quirks.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/x86_64-linux-gnu -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/x86_64-linux-gnu/libexpat.so -lm -lz -lbz2 -fopenmp -pthread make[6]: Leaving directory '/«PKGBUILDDIR»/src/progs' make[5]: Leaving directory '/«PKGBUILDDIR»/src/progs' Making all in other make[5]: Entering directory '/«PKGBUILDDIR»/src/other' Making all in sls make[6]: Entering directory '/«PKGBUILDDIR»/src/other/sls' Making all in mira-createsls make[7]: Entering directory '/«PKGBUILDDIR»/src/other/sls/mira-createsls' Making all in bin make[8]: Entering directory '/«PKGBUILDDIR»/src/other/sls/mira-createsls/bin' make[8]: Nothing to be done for 'all'. make[8]: Leaving directory '/«PKGBUILDDIR»/src/other/sls/mira-createsls/bin' make[8]: Entering directory '/«PKGBUILDDIR»/src/other/sls/mira-createsls' make[8]: Nothing to be done for 'all-am'. make[8]: Leaving directory '/«PKGBUILDDIR»/src/other/sls/mira-createsls' make[7]: Leaving directory '/«PKGBUILDDIR»/src/other/sls/mira-createsls' make[7]: Entering directory '/«PKGBUILDDIR»/src/other/sls' make[7]: Nothing to be done for 'all-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/other/sls' make[6]: Leaving directory '/«PKGBUILDDIR»/src/other/sls' make[6]: Entering directory '/«PKGBUILDDIR»/src/other' make[6]: Nothing to be done for 'all-am'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/other' make[5]: Leaving directory '/«PKGBUILDDIR»/src/other' make[5]: Entering directory '/«PKGBUILDDIR»/src' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/«PKGBUILDDIR»/src' make[4]: Leaving directory '/«PKGBUILDDIR»/src' make[4]: Entering directory '/«PKGBUILDDIR»' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/«PKGBUILDDIR»' make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_build --sourcedir=doc cd doc make -j4 make[2]: Entering directory '/«PKGBUILDDIR»/doc' Making all in docbook make[3]: Entering directory '/«PKGBUILDDIR»/doc/docbook' Making .html out of _part.xml chap_mirautils_part.html Making .html out of _part.xml chap_bitsandpieces_part.html Making .html out of _part.xml chap_est_part.html Making versionfile Making .html out of _part.xml chap_faq_part.html ERROR: xref linking to chap_dataprep has no generated link text. Error: no ID for constraint linkend: "chap_dataprep". ERROR: xref linking to chap_denovo has no generated link text. Error: no ID for constraint linkend: "chap_denovo". ERROR: xref linking to chap_results has no generated link text. Error: no ID for constraint linkend: "chap_results". ERROR: xref linking to sect_res_looking_at_results has no generated link text. Error: no ID for constraint linkend: "sect_res_looking_at_results". ERROR: xref linking to sect_res_first_look:the_assembly_info has no generated link text. Error: no ID for constraint linkend: "sect_res_first_look:the_assembly_info". ERROR: xref linking to sect_res_converting_results has no generated link text. Error: no ID for constraint linkend: "sect_res_converting_results". ERROR: xref linking to sect_res_filtering_of_results has no generated link text. Error: no ID for constraint linkend: "sect_res_filtering_of_results". ERROR: xref linking to sect_res_places_of_importance_in_a_de_novo_assembly has no generated link text. Error: no ID for constraint linkend: "sect_res_places_of_importance_in_a_de_novo_assembly". ERROR: xref linking to chap_reference has no generated link text. Error: no ID for constraint linkend: "chap_reference". ERROR: xref linking to sect_ref_manifest_basics has no generated link text. Error: no ID for constraint linkend: "sect_ref_manifest_basics". ERROR: xref linking to sect_ref_manifest_readgroups has no generated link text. Error: no ID for constraint linkend: "sect_ref_manifest_readgroups". ERROR: xref linking to sect_ref_manifest_parameters has no generated link text. Error: no ID for constraint linkend: "sect_ref_manifest_parameters". Making .html out of _part.xml chap_hard_part.html Making .html out of _part.xml chap_logfiles_part.html Making .html out of _part.xml chap_maf_part.html Making .html out of _part.xml chap_reference_part.html Making .html out of _part.xml chap_installation_part.html Making .html out of _part.xml chap_intro_part.html Making .html out of _part.xml chap_results_part.html Making .html out of _part.xml chap_sra_part.html Making .html out of _part.xml chap_seqadvice_part.html Element emph in namespace '' encountered in note, but no template matches. Making .html out of _part.xml chap_bonus_part.html Making .html out of _part.xml chap_preface_part.html xsltproc --nonet --xinclude --output DefinitiveGuideToMIRA.html ../../doc/docbook/book.xsl ../../doc/docbook/book_definitiveguide.xml xsltproc --nonet --xinclude --output 3rdparty_MIRA.html ../../doc/docbook/book.xsl ../../doc/docbook/book_3rdparty.xml dblatex --xslt-opts=--nonet --output=DefinitiveGuideToMIRA.pdf ../../doc/docbook/book_definitiveguide.xml dblatex --xslt-opts=--nonet --output=3rdparty_MIRA.pdf ../../doc/docbook/book_3rdparty.xml Build the book set list... Build the book set list... Element emph in namespace '' encountered in note, but no template matches. Build the listings... XSLT stylesheets DocBook - LaTeX 2e (0.3.7-1) =================================================== No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. Build book_3rdparty.pdf Build the listings... '3rdparty_MIRA.pdf' successfully built XSLT stylesheets DocBook - LaTeX 2e (0.3.7-1) =================================================== No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen No template matches emph in note. No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. Build book_definitiveguide.pdf 'DefinitiveGuideToMIRA.pdf' successfully built make[3]: Leaving directory '/«PKGBUILDDIR»/doc/docbook' make[3]: Entering directory '/«PKGBUILDDIR»/doc' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/doc' make[2]: Leaving directory '/«PKGBUILDDIR»/doc' cd /«PKGBUILDDIR» make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/«PKGBUILDDIR»' make check make[2]: Entering directory '/«PKGBUILDDIR»' make check-recursive make[3]: Entering directory '/«PKGBUILDDIR»' Making check in man make[4]: Entering directory '/«PKGBUILDDIR»/man' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/«PKGBUILDDIR»/man' Making check in src make[4]: Entering directory '/«PKGBUILDDIR»/src' Making check in debuggersupport make[5]: Entering directory '/«PKGBUILDDIR»/src/debuggersupport' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/debuggersupport' Making check in io make[5]: Entering directory '/«PKGBUILDDIR»/src/io' make check-am make[6]: Entering directory '/«PKGBUILDDIR»/src/io' make[6]: Nothing to be done for 'check-am'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/io' make[5]: Leaving directory '/«PKGBUILDDIR»/src/io' Making check in stdinc make[5]: Entering directory '/«PKGBUILDDIR»/src/stdinc' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/stdinc' Making check in errorhandling make[5]: Entering directory '/«PKGBUILDDIR»/src/errorhandling' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/errorhandling' Making check in util make[5]: Entering directory '/«PKGBUILDDIR»/src/util' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/util' Making check in mira make[5]: Entering directory '/«PKGBUILDDIR»/src/mira' make check-am make[6]: Entering directory '/«PKGBUILDDIR»/src/mira' make[6]: Nothing to be done for 'check-am'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/mira' make[5]: Leaving directory '/«PKGBUILDDIR»/src/mira' Making check in caf make[5]: Entering directory '/«PKGBUILDDIR»/src/caf' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/caf' Making check in memorc make[5]: Entering directory '/«PKGBUILDDIR»/src/memorc' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/memorc' Making check in modules make[5]: Entering directory '/«PKGBUILDDIR»/src/modules' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules' Making check in support make[5]: Entering directory '/«PKGBUILDDIR»/src/support' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/support' Making check in scripts make[5]: Entering directory '/«PKGBUILDDIR»/src/scripts' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/scripts' Making check in version make[5]: Entering directory '/«PKGBUILDDIR»/src/version' make check-am make[6]: Entering directory '/«PKGBUILDDIR»/src/version' make[6]: Leaving directory '/«PKGBUILDDIR»/src/version' make[5]: Leaving directory '/«PKGBUILDDIR»/src/version' Making check in progs make[5]: Entering directory '/«PKGBUILDDIR»/src/progs' Making .C out of .xxd compileinfo.itxt make check-am make[6]: Entering directory '/«PKGBUILDDIR»/src/progs' Making .C out of .xxd compileinfo.itxt g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o compileinfo.itxt.xxd.o compileinfo.itxt.xxd.C /bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib -o mira mira.o quirks.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o mira mira.o quirks.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/x86_64-linux-gnu -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/x86_64-linux-gnu/libexpat.so -lm -lz -lbz2 -fopenmp -pthread /bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib -o miratest miratest.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o miratest miratest.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/x86_64-linux-gnu -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/x86_64-linux-gnu/libexpat.so -lm -lz -lbz2 -fopenmp -pthread make[6]: Leaving directory '/«PKGBUILDDIR»/src/progs' make[5]: Leaving directory '/«PKGBUILDDIR»/src/progs' Making check in other make[5]: Entering directory '/«PKGBUILDDIR»/src/other' Making check in sls make[6]: Entering directory '/«PKGBUILDDIR»/src/other/sls' Making check in mira-createsls make[7]: Entering directory '/«PKGBUILDDIR»/src/other/sls/mira-createsls' Making check in bin make[8]: Entering directory '/«PKGBUILDDIR»/src/other/sls/mira-createsls/bin' make[8]: Nothing to be done for 'check'. make[8]: Leaving directory '/«PKGBUILDDIR»/src/other/sls/mira-createsls/bin' make[8]: Entering directory '/«PKGBUILDDIR»/src/other/sls/mira-createsls' make[8]: Nothing to be done for 'check-am'. make[8]: Leaving directory '/«PKGBUILDDIR»/src/other/sls/mira-createsls' make[7]: Leaving directory '/«PKGBUILDDIR»/src/other/sls/mira-createsls' make[7]: Entering directory '/«PKGBUILDDIR»/src/other/sls' make[7]: Nothing to be done for 'check-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/other/sls' make[6]: Leaving directory '/«PKGBUILDDIR»/src/other/sls' make[6]: Entering directory '/«PKGBUILDDIR»/src/other' make[6]: Nothing to be done for 'check-am'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/other' make[5]: Leaving directory '/«PKGBUILDDIR»/src/other' make[5]: Entering directory '/«PKGBUILDDIR»/src' make[5]: Nothing to be done for 'check-am'. make[5]: Leaving directory '/«PKGBUILDDIR»/src' make[4]: Leaving directory '/«PKGBUILDDIR»/src' make[4]: Entering directory '/«PKGBUILDDIR»' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/«PKGBUILDDIR»' make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' fakeroot debian/rules binary dh binary --with autoreconf --parallel dh_testroot -O--parallel dh_prep -O--parallel rm -f debian/mira-assembler.substvars rm -f debian/mira-assembler.*.debhelper rm -rf debian/mira-assembler/ rm -f debian/mira-rfam-12s-rrna.substvars rm -f debian/mira-rfam-12s-rrna.*.debhelper rm -rf debian/mira-rfam-12s-rrna/ rm -f debian/mira-doc.substvars rm -f debian/mira-doc.*.debhelper rm -rf debian/mira-doc/ dh_installdirs -O--parallel install -d debian/mira-assembler install -d debian/mira-assembler/usr/bin install -d debian/mira-rfam-12s-rrna install -d debian/mira-doc debian/rules override_dh_auto_install-arch make[1]: Entering directory '/«PKGBUILDDIR»' make install DESTDIR=/«PKGBUILDDIR»/debian/mira-assembler make[2]: Entering directory '/«PKGBUILDDIR»' make install-recursive make[3]: Entering directory '/«PKGBUILDDIR»' Making install in man make[4]: Entering directory '/«PKGBUILDDIR»/man' make[5]: Entering directory '/«PKGBUILDDIR»/man' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/«PKGBUILDDIR»/debian/mira-assembler/usr/share/man/man1' /usr/bin/install -c -m 644 mirabait.1 miradiff.1 miramer.1 mira.1 miraconvert.1 miramem.1 '/«PKGBUILDDIR»/debian/mira-assembler/usr/share/man/man1' make[5]: Leaving directory '/«PKGBUILDDIR»/man' make[4]: Leaving directory '/«PKGBUILDDIR»/man' Making install in src make[4]: Entering directory '/«PKGBUILDDIR»/src' Making install in debuggersupport make[5]: Entering directory '/«PKGBUILDDIR»/src/debuggersupport' make[6]: Entering directory '/«PKGBUILDDIR»/src/debuggersupport' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/debuggersupport' make[5]: Leaving directory '/«PKGBUILDDIR»/src/debuggersupport' Making install in io make[5]: Entering directory '/«PKGBUILDDIR»/src/io' make install-am make[6]: Entering directory '/«PKGBUILDDIR»/src/io' make[7]: Entering directory '/«PKGBUILDDIR»/src/io' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/io' make[6]: Leaving directory '/«PKGBUILDDIR»/src/io' make[5]: Leaving directory '/«PKGBUILDDIR»/src/io' Making install in stdinc make[5]: Entering directory '/«PKGBUILDDIR»/src/stdinc' make[6]: Entering directory '/«PKGBUILDDIR»/src/stdinc' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/stdinc' make[5]: Leaving directory '/«PKGBUILDDIR»/src/stdinc' Making install in errorhandling make[5]: Entering directory '/«PKGBUILDDIR»/src/errorhandling' make[6]: Entering directory '/«PKGBUILDDIR»/src/errorhandling' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/errorhandling' make[5]: Leaving directory '/«PKGBUILDDIR»/src/errorhandling' Making install in util make[5]: Entering directory '/«PKGBUILDDIR»/src/util' make[6]: Entering directory '/«PKGBUILDDIR»/src/util' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/util' make[5]: Leaving directory '/«PKGBUILDDIR»/src/util' Making install in mira make[5]: Entering directory '/«PKGBUILDDIR»/src/mira' make install-am make[6]: Entering directory '/«PKGBUILDDIR»/src/mira' make[7]: Entering directory '/«PKGBUILDDIR»/src/mira' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/mira' make[6]: Leaving directory '/«PKGBUILDDIR»/src/mira' make[5]: Leaving directory '/«PKGBUILDDIR»/src/mira' Making install in caf make[5]: Entering directory '/«PKGBUILDDIR»/src/caf' make[6]: Entering directory '/«PKGBUILDDIR»/src/caf' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/caf' make[5]: Leaving directory '/«PKGBUILDDIR»/src/caf' Making install in memorc make[5]: Entering directory '/«PKGBUILDDIR»/src/memorc' make[6]: Entering directory '/«PKGBUILDDIR»/src/memorc' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/memorc' make[5]: Leaving directory '/«PKGBUILDDIR»/src/memorc' Making install in modules make[5]: Entering directory '/«PKGBUILDDIR»/src/modules' make[6]: Entering directory '/«PKGBUILDDIR»/src/modules' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/modules' make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules' Making install in support make[5]: Entering directory '/«PKGBUILDDIR»/src/support' make[6]: Entering directory '/«PKGBUILDDIR»/src/support' make[6]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/«PKGBUILDDIR»/debian/mira-assembler/usr/share/mira/support_3rdparty_tools' /usr/bin/install -c -m 644 consedrc.13.0 consedtaglib.txt GTAGDB README '/«PKGBUILDDIR»/debian/mira-assembler/usr/share/mira/support_3rdparty_tools' make[6]: Leaving directory '/«PKGBUILDDIR»/src/support' make[5]: Leaving directory '/«PKGBUILDDIR»/src/support' Making install in scripts make[5]: Entering directory '/«PKGBUILDDIR»/src/scripts' make[6]: Entering directory '/«PKGBUILDDIR»/src/scripts' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/scripts' make[5]: Leaving directory '/«PKGBUILDDIR»/src/scripts' Making install in version make[5]: Entering directory '/«PKGBUILDDIR»/src/version' make install-am make[6]: Entering directory '/«PKGBUILDDIR»/src/version' make[7]: Entering directory '/«PKGBUILDDIR»/src/version' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/version' make[6]: Leaving directory '/«PKGBUILDDIR»/src/version' make[5]: Leaving directory '/«PKGBUILDDIR»/src/version' Making install in progs make[5]: Entering directory '/«PKGBUILDDIR»/src/progs' Making .C out of .xxd compileinfo.itxt make install-am make[6]: Entering directory '/«PKGBUILDDIR»/src/progs' Making .C out of .xxd compileinfo.itxt g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o compileinfo.itxt.xxd.o compileinfo.itxt.xxd.C /bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib -o mira mira.o quirks.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o mira mira.o quirks.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/x86_64-linux-gnu -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/x86_64-linux-gnu/libexpat.so -lm -lz -lbz2 -fopenmp -pthread /bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/x86_64-linux-gnu -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib -o miratest miratest.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o miratest miratest.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/x86_64-linux-gnu -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/x86_64-linux-gnu/libexpat.so -lm -lz -lbz2 -fopenmp -pthread make[7]: Entering directory '/«PKGBUILDDIR»/src/progs' Making .C out of .xxd compileinfo.itxt /bin/mkdir -p '/«PKGBUILDDIR»/debian/mira-assembler/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c mira '/«PKGBUILDDIR»/debian/mira-assembler/usr/bin' libtool: install: /usr/bin/install -c mira /«PKGBUILDDIR»/debian/mira-assembler/usr/bin/mira make install-exec-hook make[8]: Entering directory '/«PKGBUILDDIR»/src/progs' cd /«PKGBUILDDIR»/debian/mira-assembler/usr/bin && \ rm -f miramem && \ ln -s mira miramem && \ rm -f mirabait && \ ln -s mira mirabait &&\ rm -f miraconvert && \ ln -s mira miraconvert && \ rm -f miramer && \ ln -s mira miramer make[8]: Leaving directory '/«PKGBUILDDIR»/src/progs' make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/progs' make[6]: Leaving directory '/«PKGBUILDDIR»/src/progs' make[5]: Leaving directory '/«PKGBUILDDIR»/src/progs' Making install in other make[5]: Entering directory '/«PKGBUILDDIR»/src/other' Making install in sls make[6]: Entering directory '/«PKGBUILDDIR»/src/other/sls' Making install in mira-createsls make[7]: Entering directory '/«PKGBUILDDIR»/src/other/sls/mira-createsls' Making install in bin make[8]: Entering directory '/«PKGBUILDDIR»/src/other/sls/mira-createsls/bin' make[9]: Entering directory '/«PKGBUILDDIR»/src/other/sls/mira-createsls/bin' make[9]: Nothing to be done for 'install-exec-am'. make[9]: Nothing to be done for 'install-data-am'. make[9]: Leaving directory '/«PKGBUILDDIR»/src/other/sls/mira-createsls/bin' make[8]: Leaving directory '/«PKGBUILDDIR»/src/other/sls/mira-createsls/bin' make[8]: Entering directory '/«PKGBUILDDIR»/src/other/sls/mira-createsls' make[9]: Entering directory '/«PKGBUILDDIR»/src/other/sls/mira-createsls' make[9]: Nothing to be done for 'install-exec-am'. make[9]: Nothing to be done for 'install-data-am'. make[9]: Leaving directory '/«PKGBUILDDIR»/src/other/sls/mira-createsls' make[8]: Leaving directory '/«PKGBUILDDIR»/src/other/sls/mira-createsls' make[7]: Leaving directory '/«PKGBUILDDIR»/src/other/sls/mira-createsls' make[7]: Entering directory '/«PKGBUILDDIR»/src/other/sls' make[8]: Entering directory '/«PKGBUILDDIR»/src/other/sls' make[8]: Nothing to be done for 'install-exec-am'. make[8]: Nothing to be done for 'install-data-am'. make[8]: Leaving directory '/«PKGBUILDDIR»/src/other/sls' make[7]: Leaving directory '/«PKGBUILDDIR»/src/other/sls' make[6]: Leaving directory '/«PKGBUILDDIR»/src/other/sls' make[6]: Entering directory '/«PKGBUILDDIR»/src/other' make[7]: Entering directory '/«PKGBUILDDIR»/src/other' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/other' make[6]: Leaving directory '/«PKGBUILDDIR»/src/other' make[5]: Leaving directory '/«PKGBUILDDIR»/src/other' make[5]: Entering directory '/«PKGBUILDDIR»/src' make[6]: Entering directory '/«PKGBUILDDIR»/src' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/«PKGBUILDDIR»/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src' make[4]: Leaving directory '/«PKGBUILDDIR»/src' make[4]: Entering directory '/«PKGBUILDDIR»' make[5]: Entering directory '/«PKGBUILDDIR»' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/«PKGBUILDDIR»' make[4]: Leaving directory '/«PKGBUILDDIR»' make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_auto_install-indep make[1]: Entering directory '/«PKGBUILDDIR»' #There is no installation target for the docs mkdir -p /«PKGBUILDDIR»/debian/tmp/usr/share/doc/mira-assembler cp -r -t /«PKGBUILDDIR»/debian/tmp/usr/share/doc/mira-assembler doc/docbook/bookfigures doc/docbook/images \ doc/docbook/doccss doc/docbook/DefinitiveGuideToMIRA.html || true make[1]: Leaving directory '/«PKGBUILDDIR»' dh_install -O--parallel install -d debian/mira-rfam-12s-rrna/usr/share/mira/ cp --reflink=auto -a ./src/other/sls/rfam_rrna-21-12.sls.gz debian/mira-rfam-12s-rrna/usr/share/mira// cp --reflink=auto -a ./src/other/sls/mira-install-sls-rrna.sh debian/mira-rfam-12s-rrna/usr/share/mira// install -d debian/mira-doc///usr/share cp --reflink=auto -a debian/tmp//usr/share/doc/ debian/mira-doc///usr/share/ dh_installdocs -O--parallel install -d debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a NEWS debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a README debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a THANKS debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a HELP_WANTED debian/mira-assembler/usr/share/doc/mira-assembler chown -R 0:0 debian/mira-assembler/usr/share/doc chmod -R go=rX debian/mira-assembler/usr/share/doc chmod -R u\+rw debian/mira-assembler/usr/share/doc install -p -m0644 debian/copyright debian/mira-assembler/usr/share/doc/mira-assembler/copyright install -d debian/mira-rfam-12s-rrna/usr/share/doc/mira-rfam-12s-rrna install -p -m0644 debian/copyright debian/mira-rfam-12s-rrna/usr/share/doc/mira-rfam-12s-rrna/copyright install -d debian/mira-doc/usr/share/doc/mira-doc install -p -m0644 debian/mira-doc.README.Debian debian/mira-doc/usr/share/doc/mira-doc/README.Debian install -p -m0644 debian/copyright debian/mira-doc/usr/share/doc/mira-doc/copyright install -d debian/mira-doc/usr/share/doc-base/ install -p -m0644 debian/mira-doc.doc-base debian/mira-doc/usr/share/doc-base/mira-manual debian/rules override_dh_installchangelogs make[1]: Entering directory '/«PKGBUILDDIR»' dh_installchangelogs src/mira/CHANGES.txt install -p -m0644 debian/changelog debian/mira-assembler/usr/share/doc/mira-assembler/changelog.Debian install -p -m0644 src/mira/CHANGES.txt debian/mira-assembler/usr/share/doc/mira-assembler/changelog install -p -m0644 debian/changelog debian/mira-rfam-12s-rrna/usr/share/doc/mira-rfam-12s-rrna/changelog.Debian install -p -m0644 src/mira/CHANGES.txt debian/mira-rfam-12s-rrna/usr/share/doc/mira-rfam-12s-rrna/changelog install -p -m0644 debian/changelog debian/mira-doc/usr/share/doc/mira-doc/changelog.Debian install -p -m0644 src/mira/CHANGES.txt debian/mira-doc/usr/share/doc/mira-doc/changelog make[1]: Leaving directory '/«PKGBUILDDIR»' dh_installman -O--parallel man --recode UTF-8 ./miramem\.1 > miramem\.1\.new chmod 644 miramem.1.new mv -f miramem.1.new miramem.1 man --recode UTF-8 ./miraconvert\.1 > miraconvert\.1\.new chmod 644 miraconvert.1.new mv -f miraconvert.1.new miraconvert.1 man --recode UTF-8 ./miramer\.1 > miramer\.1\.new chmod 644 miramer.1.new mv -f miramer.1.new miramer.1 man --recode UTF-8 ./mirabait\.1 > mirabait\.1\.new chmod 644 mirabait.1.new mv -f mirabait.1.new mirabait.1 man --recode UTF-8 ./miradiff\.1 > miradiff\.1\.new chmod 644 miradiff.1.new mv -f miradiff.1.new miradiff.1 man --recode UTF-8 ./mira\.1 > mira\.1\.new chmod 644 mira.1.new mv -f mira.1.new mira.1 dh_lintian -O--parallel install -d debian/mira-assembler/usr/share/lintian/overrides install -p -m0644 debian/mira-assembler.lintian-overrides debian/mira-assembler/usr/share/lintian/overrides/mira-assembler install -d debian/mira-rfam-12s-rrna/usr/share/lintian/overrides install -p -m0644 debian/mira-rfam-12s-rrna.lintian-overrides debian/mira-rfam-12s-rrna/usr/share/lintian/overrides/mira-rfam-12s-rrna dh_perl -O--parallel dh_link -O--parallel rm -f debian/mira-assembler/usr/bin/miraconvert ln -sf mira debian/mira-assembler/usr/bin/miraconvert rm -f debian/mira-assembler/usr/bin/miramer ln -sf mira debian/mira-assembler/usr/bin/miramer rm -f debian/mira-assembler/usr/bin/mirabait ln -sf mira debian/mira-assembler/usr/bin/mirabait rm -f debian/mira-assembler/usr/bin/miramem ln -sf mira debian/mira-assembler/usr/bin/miramem dh_strip_nondeterminism -O--parallel dh_compress -O--parallel cd debian/mira-assembler chmod a-x usr/share/doc/mira-assembler/NEWS usr/share/doc/mira-assembler/changelog usr/share/doc/mira-assembler/changelog.Debian usr/share/man/man1/mira.1 usr/share/man/man1/mirabait.1 usr/share/man/man1/miraconvert.1 usr/share/man/man1/miradiff.1 usr/share/man/man1/miramem.1 usr/share/man/man1/miramer.1 gzip -9nf usr/share/doc/mira-assembler/NEWS usr/share/doc/mira-assembler/changelog usr/share/doc/mira-assembler/changelog.Debian usr/share/man/man1/mira.1 usr/share/man/man1/mirabait.1 usr/share/man/man1/miraconvert.1 usr/share/man/man1/miradiff.1 usr/share/man/man1/miramem.1 usr/share/man/man1/miramer.1 cd '/«PKGBUILDDIR»' cd debian/mira-rfam-12s-rrna chmod a-x usr/share/doc/mira-rfam-12s-rrna/changelog usr/share/doc/mira-rfam-12s-rrna/changelog.Debian gzip -9nf usr/share/doc/mira-rfam-12s-rrna/changelog usr/share/doc/mira-rfam-12s-rrna/changelog.Debian cd '/«PKGBUILDDIR»' cd debian/mira-doc chmod a-x usr/share/doc/mira-doc/changelog usr/share/doc/mira-doc/changelog.Debian gzip -9nf usr/share/doc/mira-doc/changelog usr/share/doc/mira-doc/changelog.Debian cd '/«PKGBUILDDIR»' dh_fixperms -O--parallel find debian/mira-assembler -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/mira-assembler ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/mira-assembler/usr/share/doc -type f ! -regex 'debian/mira-assembler/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 0755 find debian/mira-assembler/usr/share/man debian/mira-assembler/usr/man/ debian/mira-assembler/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler/usr/lib/x86_64-linux-gnu/perl5/5.22 debian/mira-assembler/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/mira-assembler -perm -5 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x find debian/mira-assembler/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w find debian/mira-assembler/usr/share/lintian/overrides -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-rfam-12s-rrna -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/mira-rfam-12s-rrna ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/mira-rfam-12s-rrna/usr/share/doc -type f ! -regex 'debian/mira-rfam-12s-rrna/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-rfam-12s-rrna/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 0755 find debian/mira-rfam-12s-rrna/usr/share/man debian/mira-rfam-12s-rrna/usr/man/ debian/mira-rfam-12s-rrna/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-rfam-12s-rrna/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-rfam-12s-rrna/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-rfam-12s-rrna/usr/lib/x86_64-linux-gnu/perl5/5.22 debian/mira-rfam-12s-rrna/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/mira-rfam-12s-rrna -perm -5 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-rfam-12s-rrna/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w find debian/mira-rfam-12s-rrna/usr/share/lintian/overrides -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-doc -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/mira-doc ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/mira-doc/usr/share/doc -type f ! -regex 'debian/mira-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-doc/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 0755 find debian/mira-doc/usr/share/man debian/mira-doc/usr/man/ debian/mira-doc/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-doc/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-doc/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-doc/usr/lib/x86_64-linux-gnu/perl5/5.22 debian/mira-doc/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/mira-doc -perm -5 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-doc/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w dh_strip -O--parallel dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: mira-assembler dh_strip debug symbol extraction: packages to act on: mira-assembler dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol strip --remove-section=.comment --remove-section=.note debian/mira-assembler/usr/bin/mira dh_makeshlibs -O--parallel rm -f debian/mira-assembler/DEBIAN/shlibs rm -f debian/mira-rfam-12s-rrna/DEBIAN/shlibs rm -f debian/mira-doc/DEBIAN/shlibs dh_shlibdeps -O--parallel install -d debian/mira-assembler/DEBIAN dpkg-shlibdeps -Tdebian/mira-assembler.substvars debian/mira-assembler/usr/bin/mira install -d debian/mira-rfam-12s-rrna/DEBIAN install -d debian/mira-doc/DEBIAN dh_installdeb -O--parallel sed s/#DEBHELPER#// < debian/mira-rfam-12s-rrna.postinst > debian/mira-rfam-12s-rrna/DEBIAN/postinst chown 0:0 debian/mira-rfam-12s-rrna/DEBIAN/postinst chmod 0755 debian/mira-rfam-12s-rrna/DEBIAN/postinst sed s/#DEBHELPER#// < debian/mira-rfam-12s-rrna.postrm > debian/mira-rfam-12s-rrna/DEBIAN/postrm chown 0:0 debian/mira-rfam-12s-rrna/DEBIAN/postrm chmod 0755 debian/mira-rfam-12s-rrna/DEBIAN/postrm dh_gencontrol -O--parallel echo misc:Depends= >> debian/mira-assembler.substvars echo misc:Pre-Depends= >> debian/mira-assembler.substvars dpkg-gencontrol -pmira-assembler -ldebian/changelog -Tdebian/mira-assembler.substvars -Pdebian/mira-assembler dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe chmod 0644 debian/mira-assembler/DEBIAN/control chown 0:0 debian/mira-assembler/DEBIAN/control echo misc:Depends= >> debian/mira-rfam-12s-rrna.substvars echo misc:Pre-Depends= >> debian/mira-rfam-12s-rrna.substvars dpkg-gencontrol -pmira-rfam-12s-rrna -ldebian/changelog -Tdebian/mira-rfam-12s-rrna.substvars -Pdebian/mira-rfam-12s-rrna dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe chmod 0644 debian/mira-rfam-12s-rrna/DEBIAN/control chown 0:0 debian/mira-rfam-12s-rrna/DEBIAN/control echo misc:Depends= >> debian/mira-doc.substvars echo misc:Pre-Depends= >> debian/mira-doc.substvars dpkg-gencontrol -pmira-doc -ldebian/changelog -Tdebian/mira-doc.substvars -Pdebian/mira-doc dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe chmod 0644 debian/mira-doc/DEBIAN/control chown 0:0 debian/mira-doc/DEBIAN/control dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform amd64: mira-assembler dh_gencontrol debug symbol wrapper: packages to act on: mira-assembler dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package mira-assembler (pkgdir debian/mira-assembler, ddeb package dir debian/mira-assembler-dbgsym) dh_gencontrol debug symbol wrapper: building mira-assembler-dbgsym_4.9.6-1build1_amd64.ddeb dpkg-deb: building package 'mira-assembler-dbgsym' in '../mira-assembler-dbgsym_4.9.6-1build1_amd64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile mira-assembler-dbgsym_4.9.6-1build1_amd64.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -O--parallel (cd debian/mira-assembler >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 0644 debian/mira-assembler/DEBIAN/md5sums chown 0:0 debian/mira-assembler/DEBIAN/md5sums (cd debian/mira-rfam-12s-rrna >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 0644 debian/mira-rfam-12s-rrna/DEBIAN/md5sums chown 0:0 debian/mira-rfam-12s-rrna/DEBIAN/md5sums (cd debian/mira-doc >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 0644 debian/mira-doc/DEBIAN/md5sums chown 0:0 debian/mira-doc/DEBIAN/md5sums debian/rules override_dh_builddeb make[1]: Entering directory '/«PKGBUILDDIR»' dh_builddeb -- -Z xz dpkg-deb -Z xz --build debian/mira-assembler .. dpkg-deb -Z xz --build debian/mira-rfam-12s-rrna .. dpkg-deb -Z xz --build debian/mira-doc .. INFO: pkgstriptranslations version 130 INFO: pkgstriptranslations version 130 INFO: pkgstriptranslations version 130 pkgstriptranslations: processing mira-rfam-12s-rrna (in debian/mira-rfam-12s-rrna); do_strip: , oemstrip: pkgstriptranslations: processing mira-assembler (in debian/mira-assembler); do_strip: , oemstrip: pkgstriptranslations: processing mira-doc (in debian/mira-doc); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/mira-rfam-12s-rrna/DEBIAN/control, package mira-rfam-12s-rrna, directory debian/mira-rfam-12s-rrna .. removing usr/share/doc/mira-rfam-12s-rrna/changelog.gz INFO: pkgstripfiles: waiting for lock (mira-rfam-12s-rrna) ... INFO: pkgstripfiles: waiting for lock (mira-rfam-12s-rrna) ... INFO: pkgstripfiles: waiting for lock (mira-rfam-12s-rrna) ... INFO: pkgstripfiles: waiting for lock (mira-rfam-12s-rrna) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/mira-doc/DEBIAN/control, package mira-doc, directory debian/mira-doc .. removing usr/share/doc/mira-doc/changelog.gz INFO: pkgstripfiles: waiting for lock (mira-doc) ... INFO: pkgstripfiles: waiting for lock (mira-rfam-12s-rrna) ... INFO: pkgstripfiles: waiting for lock (mira-doc) ... INFO: pkgstripfiles: waiting for lock (mira-rfam-12s-rrna) ... INFO: pkgstripfiles: waiting for lock (mira-doc) ... INFO: pkgstripfiles: waiting for lock (mira-rfam-12s-rrna) ... INFO: pkgstripfiles: waiting for lock (mira-doc) ... INFO: pkgstripfiles: waiting for lock (mira-rfam-12s-rrna) ... INFO: pkgstripfiles: waiting for lock (mira-doc) ... INFO: pkgstripfiles: waiting for lock (mira-rfam-12s-rrna) ... INFO: pkgstripfiles: waiting for lock (mira-doc) ... INFO: pkgstripfiles: waiting for lock (mira-rfam-12s-rrna) ... INFO: pkgstripfiles: waiting for lock (mira-doc) ... INFO: pkgstripfiles: waiting for lock (mira-rfam-12s-rrna) ... INFO: pkgstripfiles: waiting for lock (mira-doc) ... INFO: pkgstripfiles: waiting for lock (mira-rfam-12s-rrna) ... INFO: pkgstripfiles: waiting for lock (mira-doc) ... INFO: pkgstripfiles: waiting for lock (mira-rfam-12s-rrna) ... INFO: pkgstripfiles: waiting for lock (mira-doc) ... INFO: pkgstripfiles: waiting for lock (mira-rfam-12s-rrna) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/mira-assembler/DEBIAN/control, package mira-assembler, directory debian/mira-assembler .. removing usr/share/doc/mira-assembler/changelog.gz pkgstripfiles: Truncating usr/share/doc/mira-assembler/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package mira-assembler ... pkgstripfiles: No PNG files. dpkg-deb: building package 'mira-assembler' in '../mira-assembler_4.9.6-1build1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (mira-doc) ... pkgstripfiles: Truncating usr/share/doc/mira-rfam-12s-rrna/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package mira-rfam-12s-rrna ... pkgstripfiles: No PNG files. dpkg-deb: building package 'mira-rfam-12s-rrna' in '../mira-rfam-12s-rrna_4.9.6-1build1_all.deb'. pkgstripfiles: Truncating usr/share/doc/mira-doc/changelog.Debian.gz to topmost ten records pkgstripfiles: Disabled PNG optimization for -doc package mira-doc (to save build time) dpkg-deb: building package 'mira-doc' in '../mira-doc_4.9.6-1build1_all.deb'. make[1]: Leaving directory '/«PKGBUILDDIR»' dpkg-genchanges --build=any,all -mLaunchpad Build Daemon >../mira_4.9.6-1build1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build mira-4.9.6 dpkg-buildpackage: info: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20160804-1059 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ mira_4.9.6-1build1_amd64.changes: ───────────────────────────────── Format: 1.8 Date: Thu, 04 Aug 2016 08:25:56 +0000 Source: mira Binary: mira-assembler mira-rfam-12s-rrna mira-doc Architecture: amd64 all Version: 4.9.6-1build1 Distribution: yakkety-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: mira-assembler - Whole Genome Shotgun and EST Sequence Assembler mira-doc - documentation for the mira assembler mira-rfam-12s-rrna - extract of RFAM 12 rRNA database Changes: mira (4.9.6-1build1) yakkety; urgency=medium . * No-change rebuild for boost soname change. Checksums-Sha1: cd5f07c035bb2b56888798d773794cc1c5eca024 16661140 mira-assembler-dbgsym_4.9.6-1build1_amd64.ddeb 5ca9adcfd2af96b5e390271069592d1b35e61d31 2278676 mira-assembler_4.9.6-1build1_amd64.deb 4990e1f8ac3e519f1a845baa59d9d7c70953f7fd 2785550 mira-doc_4.9.6-1build1_all.deb dcfe183e58a1d4a809735f7394ad413cc7e09a72 10427688 mira-rfam-12s-rrna_4.9.6-1build1_all.deb Checksums-Sha256: 31f4cb1d7bd216d1ae8ffe5153deac64f1f35a147aaf2557051934eb9820e8b6 16661140 mira-assembler-dbgsym_4.9.6-1build1_amd64.ddeb bbf641763d0352dbc3599c7c09783995b85b956fa8d503e124913645c6c779ab 2278676 mira-assembler_4.9.6-1build1_amd64.deb 6ed9756249f900ae9e645e3222a38ab2c3be3b009d92816eb64caf3dfb3822eb 2785550 mira-doc_4.9.6-1build1_all.deb 7a12f79b5d343bf3501884d3fc1ca67155074f05542847b3068933ffd5b42101 10427688 mira-rfam-12s-rrna_4.9.6-1build1_all.deb Files: fa6c5b18cfd747b63ba41b14c0ed5a8e 16661140 science extra mira-assembler-dbgsym_4.9.6-1build1_amd64.ddeb cdbba5a8573a124804207554a37eb1be 2278676 science optional mira-assembler_4.9.6-1build1_amd64.deb 6c80a1e75a3d8ef68fc690a9ac342b10 2785550 doc optional mira-doc_4.9.6-1build1_all.deb 7ad542ecf7206fe4e4089aa8b4fbb6d7 10427688 science optional mira-rfam-12s-rrna_4.9.6-1build1_all.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ mira-assembler_4.9.6-1build1_amd64.deb ────────────────────────────────────── new debian package, version 2.0. size 2278676 bytes: control archive=1716 bytes. 1719 bytes, 33 lines control 1298 bytes, 18 lines md5sums Package: mira-assembler Source: mira Version: 4.9.6-1build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 7317 Depends: libboost-filesystem1.61.0, libboost-regex1.61.0, libboost-system1.61.0, libboost-thread1.61.0, libc6 (>= 2.14), libexpat1 (>= 2.0.1), libgcc1 (>= 1:3.0), libgomp1 (>= 4.9), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.6) Recommends: mira-rfam-12s-rrna Suggests: mira-doc Section: science Priority: optional Homepage: http://chevreux.org/projects_mira.html Description: Whole Genome Shotgun and EST Sequence Assembler The mira genome fragment assembler is a specialised assembler for sequencing projects classified as 'hard' due to high number of similar repeats. For expressed sequence tags (ESTs) transcripts, miraEST is specialised on reconstructing pristine mRNA transcripts while detecting and classifying single nucleotide polymorphisms (SNP) occurring in different variations thereof. . The assembler is routinely used for such various tasks as mutation detection in different cell types, similarity analysis of transcripts between organisms, and pristine assembly of sequences from various sources for oligo design in clinical microarray experiments. . The package provides the following executables: Binaries provided: * mira: for assembly of genome sequences * miramem: estimating memory needed to assemble projects. * mirabait: a "grep" like tool to select reads with kmers up to 256 bases. * miraconvert: is a tool to convert, extract and sometimes recalculate all kinds of data related to sequence assembly files. drwxr-xr-x root/root 0 2016-08-04 08:25 ./ drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/ drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/bin/ -rwxr-xr-x root/root 7425576 2016-08-04 08:25 ./usr/bin/mira lrwxrwxrwx root/root 0 2016-08-04 08:25 ./usr/bin/mirabait -> mira lrwxrwxrwx root/root 0 2016-08-04 08:25 ./usr/bin/miraconvert -> mira lrwxrwxrwx root/root 0 2016-08-04 08:25 ./usr/bin/miramem -> mira lrwxrwxrwx root/root 0 2016-08-04 08:25 ./usr/bin/miramer -> mira drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/ drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/doc/mira-assembler/ -rw-r--r-- root/root 1384 2016-05-01 15:18 ./usr/share/doc/mira-assembler/HELP_WANTED -rw-r--r-- root/root 263 2016-05-01 15:18 ./usr/share/doc/mira-assembler/NEWS.gz -rw-r--r-- root/root 2691 2016-05-01 15:18 ./usr/share/doc/mira-assembler/README -rw-r--r-- root/root 3929 2016-05-01 15:18 ./usr/share/doc/mira-assembler/THANKS -rw-r--r-- root/root 1212 2016-08-04 08:25 ./usr/share/doc/mira-assembler/changelog.Debian.gz -rw-r--r-- root/root 2400 2016-05-05 05:34 ./usr/share/doc/mira-assembler/copyright drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/lintian/ drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 147 2016-05-05 05:34 ./usr/share/lintian/overrides/mira-assembler drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/man/ drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/man/man1/ -rw-r--r-- root/root 1140 2016-08-04 08:25 ./usr/share/man/man1/mira.1.gz -rw-r--r-- root/root 2649 2016-08-04 08:25 ./usr/share/man/man1/mirabait.1.gz -rw-r--r-- root/root 3577 2016-08-04 08:25 ./usr/share/man/man1/miraconvert.1.gz -rw-r--r-- root/root 568 2016-08-04 08:25 ./usr/share/man/man1/miradiff.1.gz -rw-r--r-- root/root 761 2016-08-04 08:25 ./usr/share/man/man1/miramem.1.gz -rw-r--r-- root/root 566 2016-08-04 08:25 ./usr/share/man/man1/miramer.1.gz drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/mira/ drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/mira/support_3rdparty_tools/ -rw-r--r-- root/root 2571 2016-08-04 08:25 ./usr/share/mira/support_3rdparty_tools/GTAGDB -rw-r--r-- root/root 735 2016-08-04 08:25 ./usr/share/mira/support_3rdparty_tools/README -rw-r--r-- root/root 58 2016-08-04 08:25 ./usr/share/mira/support_3rdparty_tools/consedrc.13.0 -rw-r--r-- root/root 762 2016-08-04 08:25 ./usr/share/mira/support_3rdparty_tools/consedtaglib.txt mira-doc_4.9.6-1build1_all.deb ────────────────────────────── new debian package, version 2.0. size 2785550 bytes: control archive=2325 bytes. 622 bytes, 17 lines control 5377 bytes, 56 lines md5sums Package: mira-doc Source: mira Version: 4.9.6-1build1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 3830 Suggests: mira-assembler Section: doc Priority: optional Homepage: http://chevreux.org/projects_mira.html Description: documentation for the mira assembler The mira genome fragment assembler is a specialised assembler for sequencing projects classified as 'hard' due to high number of similar repeats. . This package contains an HTML book introducing to mira. drwxr-xr-x root/root 0 2016-08-04 08:25 ./ drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/ drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/ drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/doc-base/ -rw-r--r-- root/root 320 2016-05-05 05:34 ./usr/share/doc-base/mira-manual drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/doc/mira-assembler/ -rw-r--r-- root/root 867719 2016-08-04 08:25 ./usr/share/doc/mira-assembler/DefinitiveGuideToMIRA.html drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/ -rw-r--r-- root/root 50839 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/454_autoedit1.png -rw-r--r-- root/root 47236 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/454_autoedit2.png -rw-r--r-- root/root 44224 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/454_stacks_join.png -rw-r--r-- root/root 148931 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/454san_stmu_hybdenovo.png -rw-r--r-- root/root 43070 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/454sxa_hybdenovo.png -rw-r--r-- root/root 44562 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/454sxa_stms_hybdenovo.png -rw-r--r-- root/root 76376 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/gcb99_edit.png -rw-r--r-- root/root 115183 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/gcb99_replocator.png -rw-r--r-- root/root 29794 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/haf2_end_nomoredata.png -rw-r--r-- root/root 49602 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/haf2_haf5_clearshortrepeat.png -rw-r--r-- root/root 21150 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/haf5_haf2_contigcoverage.png -rw-r--r-- root/root 21611 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/haf5_haf2_contigcoverage_ovals.png -rw-r--r-- root/root 48961 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/haf5_repend_rrna.png -rw-r--r-- root/root 55878 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/haf_danger_join_notok.png -rw-r--r-- root/root 47555 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/haf_danger_join_ok.png -rw-r--r-- root/root 98082 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/ion_dh10bdirdepindel.png -rw-r--r-- root/root 100920 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/ion_dh10bgoodB13.png -rw-r--r-- root/root 143530 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/iontor_indelhpexample.png -rw-r--r-- root/root 67304 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/pb_c227-11-clcr_res.png -rw-r--r-- root/root 20985 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/pb_elasticdarkinserts01.png -rw-r--r-- root/root 21030 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/pb_elasticdarkinserts02.png -rw-r--r-- root/root 18636 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/pb_elasticdarkinserts03.png -rw-r--r-- root/root 22400 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/pb_elasticdarkinserts04.png -rw-r--r-- root/root 80496 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/results_mira2other.png -rw-r--r-- root/root 60664 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/results_miraconvert.png -rw-r--r-- root/root 30223 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/san_autoedit1.png -rw-r--r-- root/root 29634 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/san_autoedit2.png -rw-r--r-- root/root 52055 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/srmc_in_454sxahyb_1stpass.png -rw-r--r-- root/root 44833 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/srmc_in_454sxahyb_lastpass1.png -rw-r--r-- root/root 46329 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/srmc_in_454sxahyb_lastpass2.png -rw-r--r-- root/root 93548 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/sxa_cer_reads1.png -rw-r--r-- root/root 322771 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/sxa_cer_reads2.png -rw-r--r-- root/root 86120 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/sxa_gcbias_bias2009.png -rw-r--r-- root/root 204136 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/sxa_gcbias_comp20082009.png -rw-r--r-- root/root 68271 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/sxa_gcbias_nobias2008.png -rw-r--r-- root/root 41279 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/sxa_mcvc_lenski.png -rw-r--r-- root/root 42053 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/sxa_sroc_lenski1.png -rw-r--r-- root/root 42520 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/sxa_sroc_lenski2.png -rw-r--r-- root/root 44772 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/sxa_unsc_ggc1_lenski.png -rw-r--r-- root/root 45101 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/sxa_unsc_ggc2_lenski.png -rw-r--r-- root/root 43706 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/sxa_unsc_ggc3_lenski.png -rw-r--r-- root/root 42358 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/sxa_unsc_ggc4_lenski.png -rw-r--r-- root/root 44964 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/sxa_unsc_ggcxg1_lenski.png -rw-r--r-- root/root 42961 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/sxa_unsc_ggcxg2_lenski.png -rw-r--r-- root/root 46216 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/sxa_wrmcsrmc_hiding_lenski1.png -rw-r--r-- root/root 44994 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/sxa_xmastree_lenski1.png -rw-r--r-- root/root 46997 2016-08-04 08:25 ./usr/share/doc/mira-assembler/bookfigures/sxa_xmastree_lenski2.png drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/doc/mira-assembler/doccss/ -rw-r--r-- root/root 431 2016-08-04 08:25 ./usr/share/doc/mira-assembler/doccss/miradocstyle.css drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/doc/mira-assembler/images/ -rw-r--r-- root/root 427 2016-08-04 08:25 ./usr/share/doc/mira-assembler/images/README.txt -rw-r--r-- root/root 4144 2016-08-04 08:25 ./usr/share/doc/mira-assembler/images/note.png -rw-r--r-- root/root 3452 2016-08-04 08:25 ./usr/share/doc/mira-assembler/images/warning.png drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/doc/mira-doc/ -rw-r--r-- root/root 186 2016-05-05 05:34 ./usr/share/doc/mira-doc/README.Debian -rw-r--r-- root/root 1209 2016-08-04 08:25 ./usr/share/doc/mira-doc/changelog.Debian.gz -rw-r--r-- root/root 2400 2016-05-05 05:34 ./usr/share/doc/mira-doc/copyright mira-rfam-12s-rrna_4.9.6-1build1_all.deb ──────────────────────────────────────── new debian package, version 2.0. size 10427688 bytes: control archive=948 bytes. 740 bytes, 19 lines control 391 bytes, 5 lines md5sums 214 bytes, 10 lines * postinst #!/bin/bash 50 bytes, 7 lines * postrm #!/bin/bash Package: mira-rfam-12s-rrna Source: mira Version: 4.9.6-1build1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 10211 Pre-Depends: mira-assembler Suggests: mira-doc Section: science Priority: optional Homepage: http://chevreux.org/projects_mira.html Description: extract of RFAM 12 rRNA database The mira genome fragment assembler is a specialised assembler for sequencing projects classified as 'hard' due to high number of similar repeats. . This package contains data to enable MIRA and MIRABAIT to search for rRNA and rDNA. This data set contains an excerpt of the RFAM database. drwxr-xr-x root/root 0 2016-08-04 08:25 ./ drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/ drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/ drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/doc/mira-rfam-12s-rrna/ -rw-r--r-- root/root 1215 2016-08-04 08:25 ./usr/share/doc/mira-rfam-12s-rrna/changelog.Debian.gz -rw-r--r-- root/root 2400 2016-05-05 05:34 ./usr/share/doc/mira-rfam-12s-rrna/copyright drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/lintian/ drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 119 2016-05-05 05:34 ./usr/share/lintian/overrides/mira-rfam-12s-rrna drwxr-xr-x root/root 0 2016-08-04 08:25 ./usr/share/mira/ -rwxr-xr-x root/root 2548 2016-05-01 15:18 ./usr/share/mira/mira-install-sls-rrna.sh -rw-r--r-- root/root 10421035 2016-08-04 08:25 ./usr/share/mira/rfam_rrna-21-12.sls.gz ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 719232 Build-Time: 741 Distribution: yakkety-proposed Host Architecture: amd64 Install-Time: 208 Job: mira_4.9.6-1build1.dsc Machine Architecture: amd64 Package: mira Package-Time: 953 Source-Version: 4.9.6-1build1 Space: 719232 Status: successful Version: 4.9.6-1build1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20160804-1059 Build needed 00:15:53, 719232k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-10560653'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-10560653/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-10560653'] Unmounting chroot for build PACKAGEBUILD-10560653... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-10560653'] Removing build PACKAGEBUILD-10560653