RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux fisher04 4.4.0-18-powerpc64-smp #34~14.04.1-Ubuntu SMP Thu Apr 7 18:53:24 UTC 2016 ppc64 Buildd toolchain package versions: launchpad-buildd_138 python-lpbuildd_138 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa8 dpkg-dev_1.17.5ubuntu5.5 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1. Syncing the system clock with the buildd NTP service... 23 Apr 21:04:35 ntpdate[16399]: adjust time server 10.211.37.1 offset -0.000012 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-9621515', '/home/buildd/filecache-default/9f1060e2bab22ae2edac374e1f3ab0aa330b1d76'] Unpacking chroot for build PACKAGEBUILD-9621515 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-9621515'] Mounting chroot for build PACKAGEBUILD-9621515 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-9621515', 'deb http://ftpmaster.internal/ubuntu yakkety main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-security main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-updates main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-9621515 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-9621515', 'powerpc'] Updating debian chroot for build PACKAGEBUILD-9621515 Get:1 http://ftpmaster.internal/ubuntu yakkety InRelease [231 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety-security InRelease [75.0 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety-updates InRelease [75.0 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety-proposed InRelease [75.0 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main powerpc Packages [1143 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main Translation-en [568 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/universe powerpc Packages [7305 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/universe Translation-en [4355 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety-security/main powerpc Packages [64 B] Get:10 http://ftpmaster.internal/ubuntu yakkety-security/main Translation-en [64 B] Get:11 http://ftpmaster.internal/ubuntu yakkety-security/universe powerpc Packages [64 B] Get:12 http://ftpmaster.internal/ubuntu yakkety-security/universe Translation-en [64 B] Get:13 http://ftpmaster.internal/ubuntu yakkety-updates/main powerpc Packages [64 B] Get:14 http://ftpmaster.internal/ubuntu yakkety-updates/main Translation-en [64 B] Get:15 http://ftpmaster.internal/ubuntu yakkety-updates/universe powerpc Packages [64 B] Get:16 http://ftpmaster.internal/ubuntu yakkety-updates/universe Translation-en [64 B] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc Packages [80.3 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main Translation-en [32.0 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/universe powerpc Packages [167 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety-proposed/universe Translation-en [125 kB] Fetched 14.2 MB in 22s (630 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libpng16-16 The following packages will be upgraded: cpp-5 g++-5 gcc-5 gcc-5-base gcc-6-base initscripts libasan2 libatomic1 libcc1-0 libgcc-5-dev libgcc1 libgomp1 libpng12-0 libsemanage-common libsemanage1 libslang2 libstdc++-5-dev libstdc++6 libubsan0 optipng sysv-rc sysvinit-utils 22 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 66.9 MB of archives. After this operation, 176 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu yakkety/main powerpc sysvinit-utils powerpc 2.88dsf-59.3ubuntu4 [21.3 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety/main powerpc sysv-rc all 2.88dsf-59.3ubuntu4 [18.2 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc gcc-6-base powerpc 6.0.1-2ubuntu12 [15.8 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libgcc1 powerpc 1:6.0.1-2ubuntu12 [27.0 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libsemanage-common all 2.4-3build2 [6558 B] Get:6 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libsemanage1 powerpc 2.4-3build2 [67.7 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libstdc++6 powerpc 6.0.1-2ubuntu12 [409 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main powerpc initscripts powerpc 2.88dsf-59.3ubuntu4 [24.5 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libubsan0 powerpc 6.0.1-2ubuntu12 [104 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc g++-5 powerpc 5.3.1-15ubuntu3 [28.6 MB] Get:11 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc gcc-5 powerpc 5.3.1-15ubuntu3 [8041 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc cpp-5 powerpc 5.3.1-15ubuntu3 [26.6 MB] Get:13 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libcc1-0 powerpc 6.0.1-2ubuntu12 [30.2 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libgomp1 powerpc 6.0.1-2ubuntu12 [69.5 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libatomic1 powerpc 6.0.1-2ubuntu12 [7452 B] Get:16 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libasan2 powerpc 5.3.1-15ubuntu3 [231 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libstdc++-5-dev powerpc 5.3.1-15ubuntu3 [1360 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libgcc-5-dev powerpc 5.3.1-15ubuntu3 [499 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc gcc-5-base powerpc 5.3.1-15ubuntu3 [17.0 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libpng12-0 powerpc 1.2.54-6ubuntu1 [109 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libslang2 powerpc 2.3.0-2ubuntu2 [366 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main powerpc libpng16-16 powerpc 1.6.21-3 [163 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main powerpc optipng powerpc 0.7.6-1build1 [80.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 66.9 MB in 49s (1352 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11963 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.88dsf-59.3ubuntu4_powerpc.deb ... Unpacking sysvinit-utils (2.88dsf-59.3ubuntu4) over (2.88dsf-59.3ubuntu2) ... Setting up sysvinit-utils (2.88dsf-59.3ubuntu4) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11963 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.4-3build2_all.deb ... Unpacking libsemanage-common (2.4-3build2) over (2.3-1build3) ... Setting up libsemanage-common (2.4-3build2) ... Installing new version of config file /etc/selinux/semanage.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11963 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.4-3build2_powerpc.deb ... Unpacking libsemanage1:powerpc (2.4-3build2) over (2.3-1build3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libsemanage1:powerpc (2.4-3build2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11963 files and directories currently installed.) Preparing to unpack .../initscripts_2.88dsf-59.3ubuntu4_powerpc.deb ... Unpacking initscripts (2.88dsf-59.3ubuntu4) over (2.88dsf-59.3ubuntu2) ... Preparing to unpack .../libubsan0_6.0.1-2ubuntu12_powerpc.deb ... Unpacking libubsan0:powerpc (6.0.1-2ubuntu12) over (5.3.1-14ubuntu2) ... Preparing to unpack .../g++-5_5.3.1-15ubuntu3_powerpc.deb ... Unpacking g++-5 (5.3.1-15ubuntu3) over (5.3.1-14ubuntu2) ... Preparing to unpack .../gcc-5_5.3.1-15ubuntu3_powerpc.deb ... Unpacking gcc-5 (5.3.1-15ubuntu3) over (5.3.1-14ubuntu2) ... Preparing to unpack .../cpp-5_5.3.1-15ubuntu3_powerpc.deb ... Unpacking cpp-5 (5.3.1-15ubuntu3) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libcc1-0_6.0.1-2ubuntu12_powerpc.deb ... Unpacking libcc1-0:powerpc (6.0.1-2ubuntu12) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libgomp1_6.0.1-2ubuntu12_powerpc.deb ... Unpacking libgomp1:powerpc (6.0.1-2ubuntu12) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libatomic1_6.0.1-2ubuntu12_powerpc.deb ... Unpacking libatomic1:powerpc (6.0.1-2ubuntu12) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libasan2_5.3.1-15ubuntu3_powerpc.deb ... Unpacking libasan2:powerpc (5.3.1-15ubuntu3) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libstdc++-5-dev_5.3.1-15ubuntu3_powerpc.deb ... Unpacking libstdc++-5-dev:powerpc (5.3.1-15ubuntu3) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libgcc-5-dev_5.3.1-15ubuntu3_powerpc.deb ... Unpacking libgcc-5-dev:powerpc (5.3.1-15ubuntu3) over (5.3.1-14ubuntu2) ... Preparing to unpack .../gcc-5-base_5.3.1-15ubuntu3_powerpc.deb ... Unpacking gcc-5-base:powerpc (5.3.1-15ubuntu3) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libpng12-0_1.2.54-6ubuntu1_powerpc.deb ... Unpacking libpng12-0:powerpc (1.2.54-6ubuntu1) over (1.2.54-1ubuntu1) ... Preparing to unpack .../libslang2_2.3.0-2ubuntu2_powerpc.deb ... Unpacking libslang2:powerpc (2.3.0-2ubuntu2) over (2.3.0-2ubuntu1) ... Selecting previously unselected package libpng16-16:powerpc. Preparing to unpack .../libpng16-16_1.6.21-3_powerpc.deb ... Unpacking libpng16-16:powerpc (1.6.21-3) ... Preparing to unpack .../optipng_0.7.6-1build1_powerpc.deb ... Unpacking optipng (0.7.6-1build1) over (0.7.6-1) ... Processing triggers for systemd (229-4ubuntu4) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up sysv-rc (2.88dsf-59.3ubuntu4) ... Setting up initscripts (2.88dsf-59.3ubuntu4) ... Setting up libubsan0:powerpc (6.0.1-2ubuntu12) ... Setting up gcc-5-base:powerpc (5.3.1-15ubuntu3) ... Setting up cpp-5 (5.3.1-15ubuntu3) ... Setting up libcc1-0:powerpc (6.0.1-2ubuntu12) ... Setting up libgomp1:powerpc (6.0.1-2ubuntu12) ... Setting up libatomic1:powerpc (6.0.1-2ubuntu12) ... Setting up libasan2:powerpc (5.3.1-15ubuntu3) ... Setting up libgcc-5-dev:powerpc (5.3.1-15ubuntu3) ... Setting up gcc-5 (5.3.1-15ubuntu3) ... Setting up libstdc++-5-dev:powerpc (5.3.1-15ubuntu3) ... Setting up g++-5 (5.3.1-15ubuntu3) ... Setting up libpng12-0:powerpc (1.2.54-6ubuntu1) ... Setting up libslang2:powerpc (2.3.0-2ubuntu2) ... Setting up libpng16-16:powerpc (1.6.21-3) ... Setting up optipng (0.7.6-1build1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-9621515', 'powerpc', 'yakkety-proposed', '-c', 'chroot:autobuild', '--arch=powerpc', '--dist=yakkety-proposed', '--purge=never', '--nolog', 'mira_4.9.5-5build1.dsc'] Initiating build PACKAGEBUILD-9621515 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 4.4.0-18-powerpc64-smp #34~14.04.1-Ubuntu SMP Thu Apr 7 18:53:24 UTC 2016 ppc sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on fisher04.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ mira 4.9.5-5build1 (powerpc) 23 Apr 2016 21:06 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: mira Version: 4.9.5-5build1 Source Version: 4.9.5-5build1 Distribution: yakkety-proposed Machine Architecture: powerpc Host Architecture: powerpc Build Architecture: powerpc I: NOTICE: Log filtering will replace 'build/mira-DAeR7v/mira-4.9.5' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/mira-DAeR7v' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-9621515/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── mira_4.9.5-5build1.dsc exists in .; copying to chroot Check architectures ─────────────────── sh: 1: gcc: not found sbuild: warning: couldn't determine gcc system type, falling back to default (native compilation) Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-HuYrXP/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-HuYrXP/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-HuYrXP/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-HuYrXP/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-HuYrXP/apt_archive ./ Sources [208 B] Get:5 copy:/«BUILDDIR»/resolver-HuYrXP/apt_archive ./ Packages [527 B] Fetched 2854 B in 0s (245 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-HuYrXP/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 776 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-HuYrXP/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [776 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 776 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11971 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_powerpc.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dblatex, dh-autoreconf, autoconf-archive, docbook-xsl, libbz2-dev, libexpat1-dev, perl, flex, vim-common, zlib1g-dev, libboost-thread-dev, libboost-regex-dev, libboost-filesystem-dev, libboost-system-dev, libboost-iostreams-dev Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dblatex, dh-autoreconf, autoconf-archive, docbook-xsl, libbz2-dev, libexpat1-dev, perl, flex, vim-common, zlib1g-dev, libboost-thread-dev, libboost-regex-dev, libboost-filesystem-dev, libboost-system-dev, libboost-iostreams-dev dpkg-deb: building package 'sbuild-build-depends-mira-dummy' in '/«BUILDDIR»/resolver-wWK0FD/apt_archive/sbuild-build-depends-mira-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-wWK0FD/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-wWK0FD/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-wWK0FD/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-wWK0FD/apt_archive ./ Sources [533 B] Get:5 copy:/«BUILDDIR»/resolver-wWK0FD/apt_archive ./ Packages [784 B] Fetched 3436 B in 0s (304 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-wWK0FD/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install mira build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bsdmainutils dblatex debhelper dh-autoreconf dh-strip-nondeterminism docbook-xml docbook-xsl file flex fontconfig-config fonts-dejavu-core gettext gettext-base groff-base icu-devtools intltool-debian libapt-inst2.0 libarchive-zip-perl libasprintf0v5 libavahi-client3 libavahi-common-data libavahi-common3 libboost-atomic1.60-dev libboost-atomic1.60.0 libboost-chrono1.60-dev libboost-chrono1.60.0 libboost-date-time1.60-dev libboost-date-time1.60.0 libboost-filesystem-dev libboost-filesystem1.60-dev libboost-filesystem1.60.0 libboost-iostreams-dev libboost-iostreams1.60-dev libboost-iostreams1.60.0 libboost-regex-dev libboost-regex1.60-dev libboost-regex1.60.0 libboost-serialization1.60-dev libboost-serialization1.60.0 libboost-system-dev libboost-system1.60-dev libboost-system1.60.0 libboost-thread-dev libboost-thread1.60-dev libboost-thread1.60.0 libboost1.60-dev libbz2-dev libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdbus-1-3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfl-dev libfontconfig1 libfreetype6 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libharfbuzz-icu0 libharfbuzz0b libice6 libicu-dev libicu57 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libkpathsea6 liblcms2-2 libmagic1 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpoppler58 libpotrace0 libptexenc1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsm6 libsynctex1 libtexlua52 libtexluajit2 libtiff5 libtimedate-perl libtool libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxslt1.1 libxt6 libzzip-0-13 m4 man-db mime-support po-debconf poppler-data preview-latex-style python python-apt python-apt-common python-minimal python2.7 python2.7-minimal sgml-base sgml-data t1utils tex-common texlive texlive-base texlive-bibtex-extra texlive-binaries texlive-extra-utils texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-luatex texlive-math-extra texlive-pictures ucf vim-common x11-common xdg-utils xml-core xsltproc zlib1g-dev Suggested packages: gnu-standards autoconf-doc wamerican | wordlist whois vacation docbook ghostscript graphicsmagick-imagemagick-compat | imagemagick inkscape latex-cjk-all lmodern opensp pdf-viewer texlive-lang-all texlive-lang-cyrillic texlive-xetex transfig xindy dh-make docbook-dsssl docbook-defguide dbtoepub docbook-xsl-doc-html | docbook-xsl-doc-pdf | docbook-xsl-doc-text | docbook-xsl-doc docbook-xsl-saxon fop libsaxon-java libxalan2-java libxslthl-java xalan bison gettext-doc groff libboost1.60-doc libboost-context1.60-dev libboost-coroutine1.60-dev libboost-exception1.60-dev libboost-graph1.60-dev libboost-graph-parallel1.60-dev libboost-locale1.60-dev libboost-log1.60-dev libboost-math1.60-dev libboost-mpi1.60-dev libboost-mpi-python1.60-dev libboost-program-options1.60-dev libboost-python1.60-dev libboost-random1.60-dev libboost-signals1.60-dev libboost-test1.60-dev libboost-timer1.60-dev libboost-wave1.60-dev libboost1.60-tools-dev libmpfrc++-dev libntl-dev cups-common fonts-droid texlive-lang-cjk icu-doc liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk python-apt-dbg python-apt-doc python2.7-doc binfmt-support sgml-base-doc perlsgml w3-recs libxml2-utils perl-tk gv | postscript-viewer xpdf-reader | pdf-viewer dvipng dvidvi fragmaster purifyeps lacheck chktex latexmk latexdiff python-pygments libfile-which-perl libspreadsheet-parseexcel-perl texlive-pstricks libtcltk-ruby dot2tex prerex vim-gnome-py2 | vim-gtk-py2 | vim-gtk3-py2 | vim-athena-py2 | vim-nox-py2 gvfs-bin Recommended packages: libxml2-utils curl | wget | lynx-cur libasprintf-dev libgettextpo-dev bzip2-doc dbus libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl lsb-release iso-codes lmodern ruby wish libyaml-tiny-perl ghostscript libfile-homedir-perl ruby | ruby-interpreter texlive-fonts-recommended-doc tipa tex-gyre texlive-latex-base-doc texlive-latex-extra-doc prosper texlive-latex-recommended-doc texlive-pictures-doc tk vim | vim-gnome | vim-gtk | vim-gtk3 | vim-athena | vim-nox | vim-tiny libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bsdmainutils dblatex debhelper dh-autoreconf dh-strip-nondeterminism docbook-xml docbook-xsl file flex fontconfig-config fonts-dejavu-core gettext gettext-base groff-base icu-devtools intltool-debian libapt-inst2.0 libarchive-zip-perl libasprintf0v5 libavahi-client3 libavahi-common-data libavahi-common3 libboost-atomic1.60-dev libboost-atomic1.60.0 libboost-chrono1.60-dev libboost-chrono1.60.0 libboost-date-time1.60-dev libboost-date-time1.60.0 libboost-filesystem-dev libboost-filesystem1.60-dev libboost-filesystem1.60.0 libboost-iostreams-dev libboost-iostreams1.60-dev libboost-iostreams1.60.0 libboost-regex-dev libboost-regex1.60-dev libboost-regex1.60.0 libboost-serialization1.60-dev libboost-serialization1.60.0 libboost-system-dev libboost-system1.60-dev libboost-system1.60.0 libboost-thread-dev libboost-thread1.60-dev libboost-thread1.60.0 libboost1.60-dev libbz2-dev libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdbus-1-3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfl-dev libfontconfig1 libfreetype6 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libharfbuzz-icu0 libharfbuzz0b libice6 libicu-dev libicu57 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libkpathsea6 liblcms2-2 libmagic1 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpoppler58 libpotrace0 libptexenc1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsm6 libsynctex1 libtexlua52 libtexluajit2 libtiff5 libtimedate-perl libtool libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxslt1.1 libxt6 libzzip-0-13 m4 man-db mime-support po-debconf poppler-data preview-latex-style python python-apt python-apt-common python-minimal python2.7 python2.7-minimal sbuild-build-depends-mira-dummy sgml-base sgml-data t1utils tex-common texlive texlive-base texlive-bibtex-extra texlive-binaries texlive-extra-utils texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-luatex texlive-math-extra texlive-pictures ucf vim-common x11-common xdg-utils xml-core xsltproc zlib1g-dev 0 upgraded, 150 newly installed, 0 to remove and 0 not upgraded. Need to get 193 MB of archives. After this operation, 707 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-mira-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-wWK0FD/apt_archive ./ sbuild-build-depends-mira-dummy 0.invalid.0 [1028 B] Get:2 http://ftpmaster.internal/ubuntu yakkety/main powerpc libxau6 powerpc 1:1.0.8-1 [8284 B] Get:3 http://ftpmaster.internal/ubuntu yakkety/main powerpc libxdmcp6 powerpc 1:1.1.2-1.1 [10.6 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main powerpc libxcb1 powerpc 1.11.1-1ubuntu1 [35.8 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main powerpc libx11-data all 2:1.6.3-1ubuntu2 [113 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main powerpc libx11-6 powerpc 2:1.6.3-1ubuntu2 [518 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main powerpc libxext6 powerpc 2:1.3.3-1 [26.2 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main powerpc groff-base powerpc 1.22.3-7 [1201 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main powerpc bsdmainutils powerpc 9.0.6ubuntu3 [172 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main powerpc libpipeline1 powerpc 1.4.1-2 [24.2 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main powerpc man-db powerpc 2.7.5-1 [835 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main powerpc sgml-base all 1.26+nmu4ubuntu1 [12.5 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/universe powerpc autoconf-archive all 20150925-1 [637 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main powerpc libsigsegv2 powerpc 2.10-4 [13.7 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main powerpc m4 powerpc 1.4.17-5 [185 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main powerpc libfl-dev powerpc 2.6.0-11 [12.5 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main powerpc flex powerpc 2.6.0-11 [277 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main powerpc x11-common all 1:7.7+13ubuntu3 [22.4 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main powerpc libice6 powerpc 2:1.0.9-1 [34.8 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main powerpc libjpeg-turbo8 powerpc 1.4.2-0ubuntu3 [91.2 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main powerpc liblcms2-2 powerpc 2.6-3ubuntu2 [125 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main powerpc libsm6 powerpc 2:1.2.2-1 [14.2 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main powerpc libunistring0 powerpc 0.9.3-5.2ubuntu1 [254 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main powerpc libxpm4 powerpc 1:3.5.11-1 [30.0 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main powerpc libzzip-0-13 powerpc 0.13.62-3 [23.8 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main powerpc poppler-data all 0.4.7-7 [1495 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main powerpc libpython2.7-minimal powerpc 2.7.11-7ubuntu1 [336 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety/main powerpc python2.7-minimal powerpc 2.7.11-7ubuntu1 [1241 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main powerpc python-minimal powerpc 2.7.11-1 [28.1 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main powerpc mime-support all 3.59ubuntu1 [31.0 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main powerpc libexpat1 powerpc 2.1.0-7 [63.8 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main powerpc libpython2.7-stdlib powerpc 2.7.11-7ubuntu1 [1838 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main powerpc python2.7 powerpc 2.7.11-7ubuntu1 [219 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/main powerpc libpython-stdlib powerpc 2.7.11-1 [7666 B] Get:35 http://ftpmaster.internal/ubuntu yakkety/main powerpc python powerpc 2.7.11-1 [137 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/main powerpc libjbig0 powerpc 2.1-3.1 [25.3 kB] Get:37 http://ftpmaster.internal/ubuntu yakkety/main powerpc libmagic1 powerpc 1:5.25-2ubuntu1 [214 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety/main powerpc file powerpc 1:5.25-2ubuntu1 [21.1 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/main powerpc libapt-inst2.0 powerpc 1.2.10ubuntu1 [56.1 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libboost-iostreams1.60.0 powerpc 1.60.0+dfsg-4build1 [29.4 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/main powerpc ucf all 3.0036 [52.9 kB] Get:42 http://ftpmaster.internal/ubuntu yakkety/main powerpc vim-common powerpc 2:7.4.1689-3ubuntu2 [103 kB] Get:43 http://ftpmaster.internal/ubuntu yakkety/main powerpc libasprintf0v5 powerpc 0.19.7-2ubuntu3 [6592 B] Get:44 http://ftpmaster.internal/ubuntu yakkety/main powerpc gettext-base powerpc 0.19.7-2ubuntu3 [44.9 kB] Get:45 http://ftpmaster.internal/ubuntu yakkety/main powerpc libdbus-1-3 powerpc 1.10.6-1ubuntu3 [143 kB] Get:46 http://ftpmaster.internal/ubuntu yakkety/main powerpc libglib2.0-0 powerpc 2.48.0-1ubuntu4 [964 kB] Get:47 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libicu57 powerpc 57.1-1 [7481 kB] Get:48 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libxml2 powerpc 2.9.3+dfsg1-1build1 [572 kB] Get:49 http://ftpmaster.internal/ubuntu yakkety/main powerpc python-apt-common all 1.1.0~beta1build1 [17.3 kB] Get:50 http://ftpmaster.internal/ubuntu yakkety/main powerpc xml-core all 0.13+nmu2 [23.3 kB] Get:51 http://ftpmaster.internal/ubuntu yakkety/main powerpc autoconf all 2.69-9 [321 kB] Get:52 http://ftpmaster.internal/ubuntu yakkety/main powerpc autotools-dev all 20150820.1 [39.8 kB] Get:53 http://ftpmaster.internal/ubuntu yakkety/main powerpc automake all 1:1.15-4ubuntu1 [510 kB] Get:54 http://ftpmaster.internal/ubuntu yakkety/main powerpc autopoint all 0.19.7-2ubuntu3 [406 kB] Get:55 http://ftpmaster.internal/ubuntu yakkety/main powerpc sgml-data all 2.0.10 [173 kB] Get:56 http://ftpmaster.internal/ubuntu yakkety/main powerpc docbook-xml all 4.5-7.3 [74.4 kB] Get:57 http://ftpmaster.internal/ubuntu yakkety/main powerpc python-apt powerpc 1.1.0~beta1build1 [134 kB] Get:58 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libkpathsea6 powerpc 2015.20160222.37495-1build1 [51.6 kB] Get:59 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libptexenc1 powerpc 2015.20160222.37495-1build1 [33.4 kB] Get:60 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libsynctex1 powerpc 2015.20160222.37495-1build1 [38.6 kB] Get:61 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libtexlua52 powerpc 2015.20160222.37495-1build1 [80.8 kB] Get:62 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libtexluajit2 powerpc 2015.20160222.37495-1build1 [202 kB] Get:63 http://ftpmaster.internal/ubuntu yakkety/main powerpc t1utils powerpc 1.39-2 [48.9 kB] Get:64 http://ftpmaster.internal/ubuntu yakkety/main powerpc fonts-dejavu-core all 2.35-1 [1039 kB] Get:65 http://ftpmaster.internal/ubuntu yakkety/main powerpc fontconfig-config all 2.11.94-0ubuntu1 [49.9 kB] Get:66 http://ftpmaster.internal/ubuntu yakkety/main powerpc libfreetype6 powerpc 2.6.1-0.1ubuntu3 [276 kB] Get:67 http://ftpmaster.internal/ubuntu yakkety/main powerpc libfontconfig1 powerpc 2.11.94-0ubuntu1 [123 kB] Get:68 http://ftpmaster.internal/ubuntu yakkety/main powerpc libgraphite2-3 powerpc 1.3.6-1ubuntu1 [62.7 kB] Get:69 http://ftpmaster.internal/ubuntu yakkety/main powerpc libavahi-common-data powerpc 0.6.32~rc+dfsg-1ubuntu2 [21.7 kB] Get:70 http://ftpmaster.internal/ubuntu yakkety/main powerpc libavahi-common3 powerpc 0.6.32~rc+dfsg-1ubuntu2 [20.6 kB] Get:71 http://ftpmaster.internal/ubuntu yakkety/main powerpc libavahi-client3 powerpc 0.6.32~rc+dfsg-1ubuntu2 [21.7 kB] Get:72 http://ftpmaster.internal/ubuntu yakkety/main powerpc libcups2 powerpc 2.1.3-4 [173 kB] Get:73 http://ftpmaster.internal/ubuntu yakkety/main powerpc libjpeg8 powerpc 8c-2ubuntu8 [2200 B] Get:74 http://ftpmaster.internal/ubuntu yakkety/main powerpc libtiff5 powerpc 4.0.6-1 [131 kB] Get:75 http://ftpmaster.internal/ubuntu yakkety/main powerpc libcupsfilters1 powerpc 1.8.3-2ubuntu4 [75.9 kB] Get:76 http://ftpmaster.internal/ubuntu yakkety/main powerpc libcupsimage2 powerpc 2.1.3-4 [16.1 kB] Get:77 http://ftpmaster.internal/ubuntu yakkety/main powerpc libijs-0.35 powerpc 0.35-12 [14.5 kB] Get:78 http://ftpmaster.internal/ubuntu yakkety/main powerpc libjbig2dec0 powerpc 0.12+20150918-1build1 [50.4 kB] Get:79 http://ftpmaster.internal/ubuntu yakkety/main powerpc libpaper1 powerpc 1.1.24+nmu4ubuntu1 [13.4 kB] Get:80 http://ftpmaster.internal/ubuntu yakkety/main powerpc libgs9-common all 9.18~dfsg~0-0ubuntu5 [2982 kB] Get:81 http://ftpmaster.internal/ubuntu yakkety/main powerpc libgs9 powerpc 9.18~dfsg~0-0ubuntu5 [1796 kB] Get:82 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libharfbuzz0b powerpc 1.0.1-1build3 [124 kB] Get:83 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libharfbuzz-icu0 powerpc 1.0.1-1build3 [5144 B] Get:84 http://ftpmaster.internal/ubuntu yakkety/main powerpc libpixman-1-0 powerpc 0.33.6-1 [148 kB] Get:85 http://ftpmaster.internal/ubuntu yakkety/main powerpc libpoppler58 powerpc 0.41.0-0ubuntu2 [659 kB] Get:86 http://ftpmaster.internal/ubuntu yakkety/main powerpc libpotrace0 powerpc 1.13-2 [17.0 kB] Get:87 http://ftpmaster.internal/ubuntu yakkety/main powerpc libxt6 powerpc 1:1.1.5-0ubuntu1 [133 kB] Get:88 http://ftpmaster.internal/ubuntu yakkety/main powerpc libxmu6 powerpc 2:1.1.2-2 [40.3 kB] Get:89 http://ftpmaster.internal/ubuntu yakkety/main powerpc libxaw7 powerpc 2:1.0.13-1 [146 kB] Get:90 http://ftpmaster.internal/ubuntu yakkety/main powerpc libxi6 powerpc 2:1.7.6-1 [26.6 kB] Get:91 http://ftpmaster.internal/ubuntu yakkety/main powerpc tex-common all 6.04 [545 kB] Get:92 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc texlive-binaries powerpc 2015.20160222.37495-1build1 [7109 kB] Get:93 http://ftpmaster.internal/ubuntu yakkety/main powerpc libpaper-utils powerpc 1.1.24+nmu4ubuntu1 [8146 B] Get:94 http://ftpmaster.internal/ubuntu yakkety/main powerpc xdg-utils all 1.1.1-1ubuntu1 [59.9 kB] Get:95 http://ftpmaster.internal/ubuntu yakkety/main powerpc texlive-base all 2015.20160320-1 [18.2 MB] Get:96 http://ftpmaster.internal/ubuntu yakkety/main powerpc texlive-latex-base all 2015.20160320-1 [849 kB] Get:97 http://ftpmaster.internal/ubuntu yakkety/main powerpc texlive-latex-recommended all 2015.20160320-1 [13.0 MB] Get:98 http://ftpmaster.internal/ubuntu yakkety/universe powerpc texlive-fonts-recommended all 2015.20160320-1 [5695 kB] Get:99 http://ftpmaster.internal/ubuntu yakkety/universe powerpc texlive all 2015.20160320-1 [14.3 kB] Get:100 http://ftpmaster.internal/ubuntu yakkety/universe powerpc texlive-bibtex-extra all 2015.20160320-1 [38.0 MB] Get:101 http://ftpmaster.internal/ubuntu yakkety/main powerpc texlive-extra-utils all 2015.20160320-1 [11.9 MB] Get:102 http://ftpmaster.internal/ubuntu yakkety/main powerpc texlive-pictures all 2015.20160320-1 [3737 kB] Get:103 http://ftpmaster.internal/ubuntu yakkety/main powerpc preview-latex-style all 11.88-1.1ubuntu1 [184 kB] Get:104 http://ftpmaster.internal/ubuntu yakkety/universe powerpc texlive-latex-extra all 2015.20160320-1 [10.3 MB] Get:105 http://ftpmaster.internal/ubuntu yakkety/main powerpc libjs-jquery all 1.11.3+dfsg-4 [161 kB] Get:106 http://ftpmaster.internal/ubuntu yakkety/universe powerpc texlive-luatex all 2015.20160320-1 [7155 kB] Get:107 http://ftpmaster.internal/ubuntu yakkety/universe powerpc texlive-math-extra all 2015.20160320-1 [17.7 MB] Get:108 http://ftpmaster.internal/ubuntu yakkety/main powerpc libxslt1.1 powerpc 1.1.28-2.1 [128 kB] Get:109 http://ftpmaster.internal/ubuntu yakkety/main powerpc xsltproc powerpc 1.1.28-2.1 [13.1 kB] Get:110 http://ftpmaster.internal/ubuntu yakkety/universe powerpc dblatex all 0.3.7-1 [1452 kB] Get:111 http://ftpmaster.internal/ubuntu yakkety/main powerpc libcroco3 powerpc 0.6.11-1 [69.3 kB] Get:112 http://ftpmaster.internal/ubuntu yakkety/main powerpc gettext powerpc 0.19.7-2ubuntu3 [1013 kB] Get:113 http://ftpmaster.internal/ubuntu yakkety/main powerpc intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:114 http://ftpmaster.internal/ubuntu yakkety/main powerpc po-debconf all 1.0.19 [234 kB] Get:115 http://ftpmaster.internal/ubuntu yakkety/main powerpc libarchive-zip-perl all 1.56-2 [84.1 kB] Get:116 http://ftpmaster.internal/ubuntu yakkety/main powerpc libfile-stripnondeterminism-perl all 0.015-1 [10.3 kB] Get:117 http://ftpmaster.internal/ubuntu yakkety/main powerpc libtimedate-perl all 2.3000-2 [37.5 kB] Get:118 http://ftpmaster.internal/ubuntu yakkety/main powerpc dh-strip-nondeterminism all 0.015-1 [4864 B] Get:119 http://ftpmaster.internal/ubuntu yakkety/main powerpc libtool all 2.4.6-0.1 [193 kB] Get:120 http://ftpmaster.internal/ubuntu yakkety/main powerpc dh-autoreconf all 12 [15.8 kB] Get:121 http://ftpmaster.internal/ubuntu yakkety/main powerpc debhelper all 9.20160403ubuntu1 [711 kB] Get:122 http://ftpmaster.internal/ubuntu yakkety/main powerpc docbook-xsl all 1.79.1+dfsg-1 [1077 kB] Get:123 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc icu-devtools powerpc 57.1-1 [154 kB] Get:124 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libboost1.60-dev powerpc 1.60.0+dfsg-4build1 [6430 kB] Get:125 http://ftpmaster.internal/ubuntu yakkety-proposed/universe powerpc libboost-atomic1.60.0 powerpc 1.60.0+dfsg-4build1 [8174 B] Get:126 http://ftpmaster.internal/ubuntu yakkety-proposed/universe powerpc libboost-atomic1.60-dev powerpc 1.60.0+dfsg-4build1 [5140 B] Get:127 http://ftpmaster.internal/ubuntu yakkety-proposed/universe powerpc libboost-system1.60.0 powerpc 1.60.0+dfsg-4build1 [10.2 kB] Get:128 http://ftpmaster.internal/ubuntu yakkety-proposed/universe powerpc libboost-chrono1.60.0 powerpc 1.60.0+dfsg-4build1 [13.3 kB] Get:129 http://ftpmaster.internal/ubuntu yakkety-proposed/universe powerpc libboost-chrono1.60-dev powerpc 1.60.0+dfsg-4build1 [14.6 kB] Get:130 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libboost-date-time1.60.0 powerpc 1.60.0+dfsg-4build1 [21.1 kB] Get:131 http://ftpmaster.internal/ubuntu yakkety-proposed/universe powerpc libboost-serialization1.60.0 powerpc 1.60.0+dfsg-4build1 [91.0 kB] Get:132 http://ftpmaster.internal/ubuntu yakkety-proposed/universe powerpc libboost-serialization1.60-dev powerpc 1.60.0+dfsg-4build1 [130 kB] Get:133 http://ftpmaster.internal/ubuntu yakkety-proposed/universe powerpc libboost-date-time1.60-dev powerpc 1.60.0+dfsg-4build1 [26.5 kB] Get:134 http://ftpmaster.internal/ubuntu yakkety-proposed/universe powerpc libboost-filesystem1.60.0 powerpc 1.60.0+dfsg-4build1 [38.3 kB] Get:135 http://ftpmaster.internal/ubuntu yakkety-proposed/universe powerpc libboost-system1.60-dev powerpc 1.60.0+dfsg-4build1 [9190 B] Get:136 http://ftpmaster.internal/ubuntu yakkety-proposed/universe powerpc libboost-filesystem1.60-dev powerpc 1.60.0+dfsg-4build1 [47.0 kB] Get:137 http://ftpmaster.internal/ubuntu yakkety-proposed/universe powerpc libboost-filesystem-dev powerpc 1.60.0.0ubuntu1 [2824 B] Get:138 http://ftpmaster.internal/ubuntu yakkety-proposed/universe powerpc libboost-regex1.60.0 powerpc 1.60.0+dfsg-4build1 [237 kB] Get:139 http://ftpmaster.internal/ubuntu yakkety-proposed/main powerpc libicu-dev powerpc 57.1-1 [15.5 MB] Get:140 http://ftpmaster.internal/ubuntu yakkety-proposed/universe powerpc libboost-regex1.60-dev powerpc 1.60.0+dfsg-4build1 [277 kB] Get:141 http://ftpmaster.internal/ubuntu yakkety-proposed/universe powerpc libboost-iostreams1.60-dev powerpc 1.60.0+dfsg-4build1 [34.0 kB] Get:142 http://ftpmaster.internal/ubuntu yakkety-proposed/universe powerpc libboost-iostreams-dev powerpc 1.60.0.0ubuntu1 [2776 B] Get:143 http://ftpmaster.internal/ubuntu yakkety-proposed/universe powerpc libboost-regex-dev powerpc 1.60.0.0ubuntu1 [3048 B] Get:144 http://ftpmaster.internal/ubuntu yakkety-proposed/universe powerpc libboost-system-dev powerpc 1.60.0.0ubuntu1 [2930 B] Get:145 http://ftpmaster.internal/ubuntu yakkety-proposed/universe powerpc libboost-thread1.60.0 powerpc 1.60.0+dfsg-4build1 [45.8 kB] Get:146 http://ftpmaster.internal/ubuntu yakkety-proposed/universe powerpc libboost-thread1.60-dev powerpc 1.60.0+dfsg-4build1 [47.1 kB] Get:147 http://ftpmaster.internal/ubuntu yakkety-proposed/universe powerpc libboost-thread-dev powerpc 1.60.0.0ubuntu1 [2816 B] Get:148 http://ftpmaster.internal/ubuntu yakkety/main powerpc libbz2-dev powerpc 1.0.6-8 [30.5 kB] Get:149 http://ftpmaster.internal/ubuntu yakkety/main powerpc libexpat1-dev powerpc 2.1.0-7 [114 kB] Get:150 http://ftpmaster.internal/ubuntu yakkety/main powerpc zlib1g-dev powerpc 1:1.2.8.dfsg-2ubuntu4 [163 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 193 MB in 2min 28s (1299 kB/s) Selecting previously unselected package libxau6:powerpc. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11971 files and directories currently installed.) Preparing to unpack .../libxau6_1%3a1.0.8-1_powerpc.deb ... Unpacking libxau6:powerpc (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:powerpc. Preparing to unpack .../libxdmcp6_1%3a1.1.2-1.1_powerpc.deb ... Unpacking libxdmcp6:powerpc (1:1.1.2-1.1) ... Selecting previously unselected package libxcb1:powerpc. 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Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:powerpc (1.4.1-2) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up sgml-base (1.26+nmu4ubuntu1) ... Setting up autoconf-archive (20150925-1) ... Setting up libsigsegv2:powerpc (2.10-4) ... Setting up m4 (1.4.17-5) ... Setting up libfl-dev:powerpc (2.6.0-11) ... Setting up flex (2.6.0-11) ... Setting up x11-common (1:7.7+13ubuntu3) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:powerpc (2:1.0.9-1) ... Setting up libjpeg-turbo8:powerpc (1.4.2-0ubuntu3) ... Setting up liblcms2-2:powerpc (2.6-3ubuntu2) ... 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Setting up libglib2.0-0:powerpc (2.48.0-1ubuntu4) ... No schema files found: doing nothing. Setting up libicu57:powerpc (57.1-1) ... Setting up libxml2:powerpc (2.9.3+dfsg1-1build1) ... Setting up python-apt-common (1.1.0~beta1build1) ... Setting up xml-core (0.13+nmu2) ... Setting up autoconf (2.69-9) ... Setting up autotools-dev (20150820.1) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up autopoint (0.19.7-2ubuntu3) ... Setting up python-apt (1.1.0~beta1build1) ... Setting up libkpathsea6:powerpc (2015.20160222.37495-1build1) ... Setting up libptexenc1:powerpc (2015.20160222.37495-1build1) ... Setting up libsynctex1:powerpc (2015.20160222.37495-1build1) ... Setting up libtexlua52:powerpc (2015.20160222.37495-1build1) ... Setting up libtexluajit2:powerpc (2015.20160222.37495-1build1) ... Setting up t1utils (1.39-2) ... Setting up fonts-dejavu-core (2.35-1) ... 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Creating config file /etc/papersize with new version Setting up libgs9-common (9.18~dfsg~0-0ubuntu5) ... update-alternatives: using /usr/share/ghostscript/9.18 to provide /usr/share/ghostscript/current (ghostscript-current) in auto mode Setting up libgs9:powerpc (9.18~dfsg~0-0ubuntu5) ... Setting up libharfbuzz0b:powerpc (1.0.1-1build3) ... Setting up libharfbuzz-icu0:powerpc (1.0.1-1build3) ... Setting up libpixman-1-0:powerpc (0.33.6-1) ... Setting up libpoppler58:powerpc (0.41.0-0ubuntu2) ... Setting up libpotrace0 (1.13-2) ... Setting up libxt6:powerpc (1:1.1.5-0ubuntu1) ... Setting up libxmu6:powerpc (2:1.1.2-2) ... Setting up libxaw7:powerpc (2:1.0.13-1) ... Setting up libxi6:powerpc (2:1.7.6-1) ... Setting up tex-common (6.04) ... update-language: texlive-base not installed and configured, doing nothing! Setting up texlive-binaries (2015.20160222.37495-1build1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ... Setting up xdg-utils (1.1.1-1ubuntu1) ... Setting up preview-latex-style (11.88-1.1ubuntu1) ... Setting up libjs-jquery (1.11.3+dfsg-4) ... Setting up libxslt1.1:powerpc (1.1.28-2.1) ... Setting up xsltproc (1.1.28-2.1) ... Setting up libcroco3:powerpc (0.6.11-1) ... Setting up gettext (0.19.7-2ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.19) ... Setting up libarchive-zip-perl (1.56-2) ... Setting up libfile-stripnondeterminism-perl (0.015-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libtool (2.4.6-0.1) ... Setting up icu-devtools (57.1-1) ... Setting up libboost1.60-dev:powerpc (1.60.0+dfsg-4build1) ... Setting up libboost-atomic1.60.0:powerpc (1.60.0+dfsg-4build1) ... Setting up libboost-atomic1.60-dev:powerpc (1.60.0+dfsg-4build1) ... Setting up libboost-system1.60.0:powerpc (1.60.0+dfsg-4build1) ... Setting up libboost-chrono1.60.0:powerpc (1.60.0+dfsg-4build1) ... Setting up libboost-chrono1.60-dev:powerpc (1.60.0+dfsg-4build1) ... Setting up libboost-date-time1.60.0:powerpc (1.60.0+dfsg-4build1) ... Setting up libboost-serialization1.60.0:powerpc (1.60.0+dfsg-4build1) ... Setting up libboost-serialization1.60-dev:powerpc (1.60.0+dfsg-4build1) ... Setting up libboost-date-time1.60-dev:powerpc (1.60.0+dfsg-4build1) ... Setting up libboost-filesystem1.60.0:powerpc (1.60.0+dfsg-4build1) ... Setting up libboost-system1.60-dev:powerpc (1.60.0+dfsg-4build1) ... Setting up libboost-filesystem1.60-dev:powerpc (1.60.0+dfsg-4build1) ... Setting up libboost-filesystem-dev:powerpc (1.60.0.0ubuntu1) ... Setting up libboost-regex1.60.0:powerpc (1.60.0+dfsg-4build1) ... Setting up libicu-dev (57.1-1) ... Setting up libboost-regex1.60-dev:powerpc (1.60.0+dfsg-4build1) ... Setting up libboost-iostreams1.60-dev:powerpc (1.60.0+dfsg-4build1) ... Setting up libboost-iostreams-dev:powerpc (1.60.0.0ubuntu1) ... Setting up libboost-regex-dev:powerpc (1.60.0.0ubuntu1) ... Setting up libboost-system-dev:powerpc (1.60.0.0ubuntu1) ... Setting up libboost-thread1.60.0:powerpc (1.60.0+dfsg-4build1) ... Setting up libboost-thread1.60-dev:powerpc (1.60.0+dfsg-4build1) ... Setting up libboost-thread-dev:powerpc (1.60.0.0ubuntu1) ... Setting up libbz2-dev:powerpc (1.0.6-8) ... Setting up libexpat1-dev:powerpc (2.1.0-7) ... Setting up zlib1g-dev:powerpc (1:1.2.8.dfsg-2ubuntu4) ... Processing triggers for sgml-base (1.26+nmu4ubuntu1) ... Setting up sgml-data (2.0.10) ... Setting up docbook-xsl (1.79.1+dfsg-1) ... Processing triggers for tex-common (6.04) ... update-language: texlive-base not installed and configured, doing nothing! texlive-base is not ready, skipping fmtutil-sys --all call Setting up texlive-base (2015.20160320-1) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Processing triggers for sgml-base (1.26+nmu4ubuntu1) ... Setting up docbook-xml (4.5-7.3) ... Processing triggers for tex-common (6.04) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up texlive-fonts-recommended (2015.20160320-1) ... Setting up texlive-luatex (2015.20160320-1) ... Setting up texlive-latex-base (2015.20160320-1) ... Processing triggers for tex-common (6.04) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up texlive-bibtex-extra (2015.20160320-1) ... Setting up texlive-extra-utils (2015.20160320-1) ... Setting up texlive-math-extra (2015.20160320-1) ... Setting up texlive-latex-recommended (2015.20160320-1) ... Setting up texlive (2015.20160320-1) ... Setting up texlive-pictures (2015.20160320-1) ... Processing triggers for tex-common (6.04) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up texlive-latex-extra (2015.20160320-1) ... Processing triggers for tex-common (6.04) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Processing triggers for sgml-base (1.26+nmu4ubuntu1) ... Setting up dblatex (0.3.7-1) ... Setting up dh-strip-nondeterminism (0.015-1) ... Setting up debhelper (9.20160403ubuntu1) ... Setting up dh-autoreconf (12) ... Setting up sbuild-build-depends-mira-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Processing triggers for systemd (229-4ubuntu4) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 4.4.0-18-powerpc64-smp powerpc (ppc) Toolchain package versions: binutils_2.26-8ubuntu2 dpkg-dev_1.18.4ubuntu1 g++-5_5.3.1-15ubuntu3 gcc-5_5.3.1-15ubuntu3 libc6-dev_2.23-0ubuntu3 libstdc++-5-dev_5.3.1-15ubuntu3 libstdc++6_6.0.1-2ubuntu12 linux-libc-dev_4.4.0-21.37 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.2.10ubuntu1 apt-transport-https_1.2.10ubuntu1 autoconf_2.69-9 autoconf-archive_20150925-1 automake_1:1.15-4ubuntu1 autopoint_0.19.7-2ubuntu3 autotools-dev_20150820.1 base-files_9.6ubuntu1 base-passwd_3.5.39 bash_4.3-14ubuntu1 binutils_2.26-8ubuntu2 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.27.1-6ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20160104ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:5.3.1-1ubuntu1 cpp-5_5.3.1-15ubuntu3 dash_0.5.8-2.1ubuntu2 dblatex_0.3.7-1 debconf_1.5.58ubuntu1 debhelper_9.20160403ubuntu1 debianutils_4.7 dh-autoreconf_12 dh-strip-nondeterminism_0.015-1 diffutils_1:3.3-3 dmsetup_2:1.02.110-1ubuntu10 docbook-xml_4.5-7.3 docbook-xsl_1.79.1+dfsg-1 dpkg_1.18.4ubuntu1 dpkg-dev_1.18.4ubuntu1 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.6.0+git+20160126-2 flex_2.6.0-11 fontconfig-config_2.11.94-0ubuntu1 fonts-dejavu-core_2.35-1 g++_4:5.3.1-1ubuntu1 g++-5_5.3.1-15ubuntu3 gcc_4:5.3.1-1ubuntu1 gcc-5_5.3.1-15ubuntu3 gcc-5-base_5.3.1-15ubuntu3 gcc-6-base_6.0.1-2ubuntu12 gettext_0.19.7-2ubuntu3 gettext-base_0.19.7-2ubuntu3 gnupg_1.4.20-1ubuntu3 gpgv_1.4.20-1ubuntu3 grep_2.24-1 groff-base_1.22.3-7 gzip_1.6-4ubuntu1 hostname_3.16ubuntu2 icu-devtools_57.1-1 init_1.29ubuntu1 init-system-helpers_1.29ubuntu1 initscripts_2.88dsf-59.3ubuntu4 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 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libboost-iostreams1.60.0_1.60.0+dfsg-4build1 libboost-regex-dev_1.60.0.0ubuntu1 libboost-regex1.60-dev_1.60.0+dfsg-4build1 libboost-regex1.60.0_1.60.0+dfsg-4build1 libboost-serialization1.60-dev_1.60.0+dfsg-4build1 libboost-serialization1.60.0_1.60.0+dfsg-4build1 libboost-system-dev_1.60.0.0ubuntu1 libboost-system1.60-dev_1.60.0+dfsg-4build1 libboost-system1.60.0_1.60.0+dfsg-4build1 libboost-thread-dev_1.60.0.0ubuntu1 libboost-thread1.60-dev_1.60.0+dfsg-4build1 libboost-thread1.60.0_1.60.0+dfsg-4build1 libboost1.60-dev_1.60.0+dfsg-4build1 libbz2-1.0_1.0.6-8 libbz2-dev_1.0.6-8 libc-bin_2.23-0ubuntu3 libc-dev-bin_2.23-0ubuntu3 libc6_2.23-0ubuntu3 libc6-dev_2.23-0ubuntu3 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_6.0.1-2ubuntu12 libcomerr2_1.42.13-1ubuntu1 libcroco3_0.6.11-1 libcryptsetup4_2:1.6.6-5ubuntu2 libcups2_2.1.3-4 libcupsfilters1_1.8.3-2ubuntu4 libcupsimage2_2.1.3-4 libcurl3-gnutls_7.47.0-1ubuntu2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1ubuntu3 libdebconfclient0_0.198ubuntu1 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libicu-dev_57.1-1 libicu57_57.1-1 libidn11_1.32-3ubuntu1 libijs-0.35_0.35-12 libisl15_0.16.1-1 libjbig0_2.1-3.1 libjbig2dec0_0.12+20150918-1build1 libjpeg-turbo8_1.4.2-0ubuntu3 libjpeg8_8c-2ubuntu8 libjs-jquery_1.11.3+dfsg-4 libk5crypto3_1.13.2+dfsg-5 libkeyutils1_1.5.9-8ubuntu1 libkmod2_22-1ubuntu4 libkpathsea6_2015.20160222.37495-1build1 libkrb5-26-heimdal_1.7~git20150920+dfsg-4ubuntu1 libkrb5-3_1.13.2+dfsg-5 libkrb5support0_1.13.2+dfsg-5 liblcms2-2_2.6-3ubuntu2 libldap-2.4-2_2.4.42+dfsg-2ubuntu3 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.25-2ubuntu1 libmount1_2.27.1-6ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.4-1 libncurses5_6.0+20160213-1ubuntu1 libncursesw5_6.0+20160213-1ubuntu1 libnettle6_3.2-1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpaper-utils_1.1.24+nmu4ubuntu1 libpaper1_1.1.24+nmu4ubuntu1 libpcre3_2:8.38-3.1 libperl5.22_5.22.1-9 libpipeline1_1.4.1-2 libpixman-1-0_0.33.6-1 libpng12-0_1.2.54-6ubuntu1 libpng16-16_1.6.21-3 libpoppler58_0.41.0-0ubuntu2 libpotrace0_1.13-2 libprocps4_2:3.3.10-4ubuntu2 libptexenc1_2015.20160222.37495-1build1 libpython-stdlib_2.7.11-1 libpython2.7-minimal_2.7.11-7ubuntu1 libpython2.7-stdlib_2.7.11-7ubuntu1 libreadline6_6.3-8ubuntu2 libroken18-heimdal_1.7~git20150920+dfsg-4ubuntu1 librtmp1_2.4+20151223.gitfa8646d-1build1 libsasl2-2_2.1.26.dfsg1-14build1 libsasl2-modules-db_2.1.26.dfsg1-14build1 libseccomp2_2.2.3-3ubuntu3 libselinux1_2.4-3build2 libsemanage-common_2.4-3build2 libsemanage1_2.4-3build2 libsepol1_2.4-2 libsigsegv2_2.10-4 libslang2_2.3.0-2ubuntu2 libsm6_2:1.2.2-1 libsmartcols1_2.27.1-6ubuntu3 libsqlite3-0_3.11.0-1ubuntu1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2g-1ubuntu4 libstdc++-5-dev_5.3.1-15ubuntu3 libstdc++6_6.0.1-2ubuntu12 libsynctex1_2015.20160222.37495-1build1 libsystemd0_229-4ubuntu4 libtasn1-6_4.7-3 libtexlua52_2015.20160222.37495-1build1 libtexluajit2_2015.20160222.37495-1build1 libtiff5_4.0.6-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160213-1ubuntu1 libtool_2.4.6-0.1 libubsan0_6.0.1-2ubuntu12 libudev1_229-4ubuntu4 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-6ubuntu3 libwind0-heimdal_1.7~git20150920+dfsg-4ubuntu1 libx11-6_2:1.6.3-1ubuntu2 libx11-data_2:1.6.3-1ubuntu2 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1 libxcb1_1.11.1-1ubuntu1 libxdmcp6_1:1.1.2-1.1 libxext6_2:1.3.3-1 libxi6_2:1.7.6-1 libxml2_2.9.3+dfsg1-1build1 libxmu6_2:1.1.2-2 libxpm4_1:3.5.11-1 libxslt1.1_1.1.28-2.1 libxt6_1:1.1.5-0ubuntu1 libzzip-0-13_0.13.62-3 linux-libc-dev_4.4.0-21.37 lockfile-progs_0.1.17 login_1:4.2-3.1ubuntu5 lsb-base_9.20160110 m4_1.4.17-5 make_4.1-6 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mime-support_3.59ubuntu1 mount_2.27.1-6ubuntu3 multiarch-support_2.23-0ubuntu3 ncurses-base_6.0+20160213-1ubuntu1 ncurses-bin_6.0+20160213-1ubuntu1 openssl_1.0.2g-1ubuntu4 optipng_0.7.6-1build1 passwd_1:4.2-3.1ubuntu5 patch_2.7.5-1 perl_5.22.1-9 perl-base_5.22.1-9 perl-modules-5.22_5.22.1-9 pkg-create-dbgsym_0.72 pkgbinarymangler_129 po-debconf_1.0.19 policyrcd-script-zg2_0.1-2 poppler-data_0.4.7-7 preview-latex-style_11.88-1.1ubuntu1 procps_2:3.3.10-4ubuntu2 python_2.7.11-1 python-apt_1.1.0~beta1build1 python-apt-common_1.1.0~beta1build1 python-minimal_2.7.11-1 python2.7_2.7.11-7ubuntu1 python2.7-minimal_2.7.11-7ubuntu1 readline-common_6.3-8ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mira-dummy_0.invalid.0 sed_4.2.2-7 sensible-utils_0.0.9 sgml-base_1.26+nmu4ubuntu1 sgml-data_2.0.10 systemd_229-4ubuntu4 systemd-sysv_229-4ubuntu4 sysv-rc_2.88dsf-59.3ubuntu4 sysvinit-utils_2.88dsf-59.3ubuntu4 t1utils_1.39-2 tar_1.28-2.1 tex-common_6.04 texlive_2015.20160320-1 texlive-base_2015.20160320-1 texlive-bibtex-extra_2015.20160320-1 texlive-binaries_2015.20160222.37495-1build1 texlive-extra-utils_2015.20160320-1 texlive-fonts-recommended_2015.20160320-1 texlive-latex-base_2015.20160320-1 texlive-latex-extra_2015.20160320-1 texlive-latex-recommended_2015.20160320-1 texlive-luatex_2015.20160320-1 texlive-math-extra_2015.20160320-1 texlive-pictures_2015.20160320-1 tzdata_2016d-0ubuntu0.16.04 ubuntu-keyring_2012.05.19 ucf_3.0036 util-linux_2.27.1-6ubuntu3 vim-common_2:7.4.1689-3ubuntu2 x11-common_1:7.7+13ubuntu3 xdg-utils_1.1.1-1ubuntu1 xml-core_0.13+nmu2 xsltproc_1.1.28-2.1 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu4 zlib1g-dev_1:1.2.8.dfsg-2ubuntu4 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Sat Apr 23 19:25:44 2016 UTC using RSA key ID 778FA6F5 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./mira_4.9.5-5build1.dsc dpkg-source: info: extracting mira in mira-4.9.5 dpkg-source: info: unpacking mira_4.9.5.orig.tar.bz2 dpkg-source: info: unpacking mira_4.9.5-5build1.debian.tar.xz dpkg-source: info: applying make-reproducible dpkg-source: info: applying fix_strange_link_issue.patch dpkg-source: info: applying spelling.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=8 HOME=/home/buildd LANG=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package mira dpkg-buildpackage: source version 4.9.5-5build1 dpkg-buildpackage: source distribution yakkety dpkg-source --before-build mira-4.9.5 dpkg-buildpackage: host architecture powerpc fakeroot debian/rules clean dh clean --with autoreconf dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/«PKGBUILDDIR»' ( cd doc ; make clean ) || true make[2]: Entering directory '/«PKGBUILDDIR»/doc' cd .. && make am--refresh make[3]: *** No rule to make target 'am--refresh'. Stop. make[3]: Entering directory '/«PKGBUILDDIR»' make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: *** [../aclocal.m4] Error 2 Makefile:266: recipe for target '../aclocal.m4' failed make[2]: Leaving directory '/«PKGBUILDDIR»/doc' dh_auto_clean find * -name Makefile -exec rm '{}' ';' find * -name '*.xxd.H' -exec rm '{}' ';' find * -name '*.par.H' -exec rm '{}' ';' find * -name 'compileinfo.*' -exec rm '{}' ';' make[1]: Leaving directory '/«PKGBUILDDIR»' dh_autoreconf_clean debian/rules override_dh_clean make[1]: Entering directory '/«PKGBUILDDIR»' dh_clean rm -f debian/debhelper-build-stamp rm -f debian/mira-assembler.substvars rm -f debian/mira-assembler.*.debhelper rm -rf debian/mira-assembler/ rm -f debian/mira-examples.substvars rm -f debian/mira-examples.*.debhelper rm -rf debian/mira-examples/ rm -f debian/mira-doc.substvars rm -f debian/mira-doc.*.debhelper rm -rf debian/mira-doc/ rm -rf debian/.debhelper/ rm -f debian/*.debhelper.log rm -f debian/files rm -f -- src/io/so.obo.xxd find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f *-stamp rm -rf lib make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules build-arch dh build-arch --with autoreconf dh_testdir -a dh_update_autotools_config -a install -d debian/.debhelper/bucket/files cp -an --reflink=auto config.guess debian/.debhelper/bucket/files/9be3de218833c076786b919dc34aab691611f4cd73316e7705f2673e2c41921b.tmp mv -f debian/.debhelper/bucket/files/9be3de218833c076786b919dc34aab691611f4cd73316e7705f2673e2c41921b.tmp debian/.debhelper/bucket/files/9be3de218833c076786b919dc34aab691611f4cd73316e7705f2673e2c41921b cp -f /usr/share/misc/config.guess ./config.guess cp -an --reflink=auto config.sub debian/.debhelper/bucket/files/e308ae7f7f524bd790f8d4457c7c0a30f8403ffff4dd0b7d4388daca24275db4.tmp mv -f debian/.debhelper/bucket/files/e308ae7f7f524bd790f8d4457c7c0a30f8403ffff4dd0b7d4388daca24275db4.tmp debian/.debhelper/bucket/files/e308ae7f7f524bd790f8d4457c7c0a30f8403ffff4dd0b7d4388daca24275db4 cp -f /usr/share/misc/config.sub ./config.sub dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} \; > debian/autoreconf.before autoreconf -f -i libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:102: installing './compile' configure.ac:9: installing './missing' doc/docbook/Makefile.am:22: warning: '%'-style pattern rules are a GNU make extension src/caf/Makefile.am: installing './depcomp' src/io/Makefile.am:12: warning: '%'-style pattern rules are a GNU make extension src/mira/Makefile.am:10: warning: '%'-style pattern rules are a GNU make extension find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} \; > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/«PKGBUILDDIR»' mkdir lib ln -s /usr/lib/libtcmalloc_minimal.so.4 lib/libtcmalloc_minimal.so #dh_auto_configure dh_auto_configure -- --with-boost-libdir=/usr/lib/powerpc-linux-gnu ./configure --build=powerpc-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/powerpc-linux-gnu --libexecdir=\${prefix}/lib/powerpc-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --with-boost-libdir=/usr/lib/powerpc-linux-gnu configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '2001' is supported by ustar format... yes checking whether GID '2501' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking for a sed that does not truncate output... /bin/sed checking whether to add --prefix as include path... yes +++++++++++++++++++++++++++++++++++++ systemuname: Linux CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include CXXFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none +++++++++++++++++++++++++++++++++++++ systemuname: Linux CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include CXXFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for int64_t... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking whether long has 64bit... no checking whether enabling 64bit compilation support... no checking build system type... powerpc-unknown-linux-gnu checking for compiler optimisation settings... -O3 -funroll-loops +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking host system type... powerpc-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert powerpc-unknown-linux-gnu file names to powerpc-unknown-linux-gnu format... func_convert_file_noop checking how to convert powerpc-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether make sets $(MAKE)... (cached) yes checking whether ln -s works... yes checking for flex... yes checking for flex... flex checking lex output file root... lex.yy checking lex library... -lfl checking whether yytext is a pointer... yes checking for flex++... yes checking for xxd... yes checking for ANSI C header files... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for C/C++ restrict keyword... __restrict checking whether struct tm is in sys/time.h or time.h... time.h checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking whether lstat correctly handles trailing slash... yes checking whether stat accepts an empty string... no checking for strftime... yes checking for floor... no checking for memset... yes checking for pow... no checking for sqrt... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for _LARGEFILE_SOURCE value needed for large files... no checking for isblank... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking for boostlib >= 1.48.0... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -I/usr/include BOOST LDFLAGS: -L/usr/lib/powerpc-linux-gnu ac_boost_path: ac_boost_lib_path: /usr/lib/powerpc-linux-gnu CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -I/usr/include BOOST LDFLAGS: -L/usr/lib/powerpc-linux-gnu CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/powerpc-linux-gnu CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking whether the Boost::Thread library is available... yes checking for exit in -lboost_thread... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/powerpc-linux-gnu ac_boost_path: ac_boost_lib_path: /usr/lib/powerpc-linux-gnu BOOST_THREAD_LIB: -lboost_thread CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/powerpc-linux-gnu CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/powerpc-linux-gnu ac_boost_path: ac_boost_lib_path: /usr/lib/powerpc-linux-gnu BOOST_THREAD_LIB: -lboost_thread CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/powerpc-linux-gnu CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/powerpc-linux-gnu LIBS now: -lboost_thread +++++++++++++++++++++++++++++++++++++ checking whether the Boost::Regex library is available... yes checking for exit in -lboost_regex... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/powerpc-linux-gnu ac_boost_path: ac_boost_lib_path: /usr/lib/powerpc-linux-gnu BOOST_REGEX_LIB: -lboost_regex CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/powerpc-linux-gnu CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex +++++++++++++++++++++++++++++++++++++ checking whether the Boost::System library is available... yes checking for exit in -lboost_system... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/powerpc-linux-gnu ac_boost_path: ac_boost_lib_path: /usr/lib/powerpc-linux-gnu BOOST_SYSTEM_LIB: -lboost_system CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/powerpc-linux-gnu CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex -lboost_system +++++++++++++++++++++++++++++++++++++ checking whether the Boost::Filesystem library is available... yes checking for exit in -lboost_filesystem... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/powerpc-linux-gnu ac_boost_path: ac_boost_lib_path: /usr/lib/powerpc-linux-gnu BOOST_FILESYSTEM_LIB: -lboost_filesystem CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/powerpc-linux-gnu CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem +++++++++++++++++++++++++++++++++++++ checking whether the Boost::IOStreams library is available... yes checking for exit in -lboost_iostreams... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/powerpc-linux-gnu ac_boost_path: ac_boost_lib_path: /usr/lib/powerpc-linux-gnu BOOST_IOSTREAMS_LIB: -lboost_iostreams CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/powerpc-linux-gnu CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams +++++++++++++++++++++++++++++++++++++ checking for clock_gettime in -lrt... yes +++++++++++++++++++++++++++++++++++++ Need to specifically use rt library LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt +++++++++++++++++++++++++++++++++++++ checking for Expat XML Parser headers in /usr/include... found checking for Expat XML Parser libraries... found checking for Expat XML Parser... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -I/usr/include CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/powerpc-linux-gnu -L/usr/lib LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat +++++++++++++++++++++++++++++++++++++ checking if zlib is wanted... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -I/usr/include CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/powerpc-linux-gnu -L/usr/lib LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz +++++++++++++++++++++++++++++++++++++ checking for gzoffset in -lz... yes checking for BZ2_bzRead in -lbz2... yes checking for flex version compatible with MIRA... yes checking for profiling settings... no checking for purify... no checking whether mira should compile in public quiet mode... yes checking whether mira should compile with bound tracking... yes checking whether mira should compile with bug tracking... yes checking whether mira should compile with extended bug tracking... no checking whether mira should compile with function trace... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/stdinc/Makefile config.status: creating src/debuggersupport/Makefile config.status: creating src/memorc/Makefile config.status: creating src/errorhandling/Makefile config.status: creating src/util/Makefile config.status: creating src/io/Makefile config.status: creating src/mira/Makefile config.status: creating src/caf/Makefile config.status: creating src/support/Makefile config.status: creating src/scripts/Makefile config.status: creating src/modules/Makefile config.status: creating src/progs/Makefile config.status: creating doc/Makefile config.status: creating doc/docbook/Makefile config.status: creating distribution/Makefile config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode -------------------------------------------------------------------------------- Summary of MIRA configuration -------------------------------------------------------------------------------- Building version ................................. 4.9.5_2_linux-gnu_powerpc_32_dynamic We are building on ............................... Linux CPU supports 64 bit? ............................. no Compiler family .................................. gcc Compiler optimisation flags used ................. -O3 -funroll-loops Building completely static? ...................... no BOOST expected to compile and link? .............. yes Linking with TCmalloc library? ................... no Have complete zlib support? ...................... yes Can MIRA be built on this system? ................ yes Using CFLAGS : -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -I/usr/include -Werror=uninitialized -Werror=return-type Using CXXFLAGS : -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 Using LDFLAGS : -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/powerpc-linux-gnu -L/usr/lib Using LIBS : -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 Looks good, we do not expect compilation problems. -------------------------------------------------------------------------------- Type 'make' to make the binaries and then 'make install' to install them. make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_auto_build make[1]: Entering directory '/«PKGBUILDDIR»' # some *.cc files are created by old flex version which breaks the build # see bug #812681 find -name '*.ll' | sed -e 's/[.]ll$/.cc/' | xargs rm dh_auto_build --parallel make -j8 make[2]: Entering directory '/«PKGBUILDDIR»' make all-recursive make[3]: Entering directory '/«PKGBUILDDIR»' Making all in src make[4]: Entering directory '/«PKGBUILDDIR»/src' make all-recursive make[5]: Entering directory '/«PKGBUILDDIR»/src' Making all in debuggersupport make[6]: Entering directory '/«PKGBUILDDIR»/src/debuggersupport' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o dbgsupport.o dbgsupport.C rm -f libmiradebuggersupport.a ar cru libmiradebuggersupport.a dbgsupport.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiradebuggersupport.a make[6]: Leaving directory '/«PKGBUILDDIR»/src/debuggersupport' Making all in io make[6]: Entering directory '/«PKGBUILDDIR»/src/io' Making .H out of .xxd mira_ft_set.xxd.H Making .H out of .xxd gap4_ft_so_map.xxd.H Making .H out of .xxd oldso2so.xxd.H Making .H out of .xxd so2xgap4map.xxd.H Reducing so.obo for smaller so.obo.xxd Making .H out of .xxd so.obo.xxd.H make all-am make[7]: Entering directory '/«PKGBUILDDIR»/src/io' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o annotationmappings.o annotationmappings.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o exp.o exp.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o generalio.o generalio.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o fasta.o fasta.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o fastq-mira.o fastq-mira.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o phd.o phd.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o scf.o scf.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o ncbiinfoxml.o ncbiinfoxml.C /bin/bash ../../ylwrap exp_flexer.ll lex.yy.c exp_flexer.cc -- flex g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o exp_flexer.o exp_flexer.cc In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from ../../src/io/fastq-mira.H:31, from fastq-mira.C:26: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from ../../src/io/fastq-mira.H:31, from fastq-mira.C:26: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from ../../src/io/fastq-mira.H:31, from fastq-mira.C:26: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ rm -f libmirafio.a ar cru libmirafio.a annotationmappings.o exp.o generalio.o fasta.o fastq-mira.o phd.o scf.o ncbiinfoxml.o exp_flexer.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmirafio.a make[7]: Leaving directory '/«PKGBUILDDIR»/src/io' make[6]: Leaving directory '/«PKGBUILDDIR»/src/io' Making all in stdinc make[6]: Entering directory '/«PKGBUILDDIR»/src/stdinc' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/stdinc' Making all in errorhandling make[6]: Entering directory '/«PKGBUILDDIR»/src/errorhandling' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o errorhandling.o errorhandling.C rm -f libmiraerrorhandling.a ar cru libmiraerrorhandling.a errorhandling.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiraerrorhandling.a make[6]: Leaving directory '/«PKGBUILDDIR»/src/errorhandling' Making all in util make[6]: Entering directory '/«PKGBUILDDIR»/src/util' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o machineinfo.o machineinfo.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o fileanddisk.o fileanddisk.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o misc.o misc.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o dptools.o dptools.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o fmttext.o fmttext.C rm -f libmirafmttext.a ar cru libmirafmttext.a fmttext.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmirafmttext.a fileanddisk.C:838:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush(); } ^ fileanddisk.C:50:0: note: this is the location of the previous definition #define CEBUG(bla) ^ fileanddisk.C:943:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ fileanddisk.C:838:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush(); } ^ rm -f libmiradptools.a ar cru libmiradptools.a dptools.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiradptools.a fileanddisk.C: In function ‘int64 myGZRead(gzFile_s*&, void*, uint64)’: fileanddisk.C:171:28: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] strerror_r(errno,buf,1024); ^ rm -f libmirautil.a ar cru libmirautil.a machineinfo.o fileanddisk.o misc.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmirautil.a make[6]: Leaving directory '/«PKGBUILDDIR»/src/util' Making all in mira make[6]: Entering directory '/«PKGBUILDDIR»/src/mira' Making .H out of .xxd adaptorsforclip.454.xxd.H Making .H out of .xxd adaptorsforclip.iontor.xxd.H Making .H out of .xxd adaptorsregex.solexa.xxd.H Making .H out of .xxd adaptorsforclip.solexa.xxd.H Making .H out of .xxd seqforfilter_phix174.solexa.xxd.H Making .H out of .xxd adaptorsregex.iontor.xxd.H make all-am make[7]: Entering directory '/«PKGBUILDDIR»/src/mira' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o estassembly.o estassembly.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o hashstats_sdbg.o hashstats_sdbg.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o hashstats.o hashstats.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o skim.o skim.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly.o assembly.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o contig.o contig.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o read.o read.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o contig_analysis.o contig_analysis.C hashstats.C:922:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} ^ hashstats.C:78:0: note: this is the location of the previous definition #define CEBUG(bla) ^ hashstats.C:1031:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ hashstats.C:922:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} ^ read.C: In member function ‘void Read::dumpAsReadname(std::ostream&)’: read.C:1262:33: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function ‘void Read::dumpAsFASTA(std::ostream&, bool, bool, bool)’: read.C:1293:33: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function ‘void Read::dumpAsFASTQ(std::ostream&, bool, bool, bool)’: read.C:1377:33: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function ‘void Read::dumpAsFASTAQual(std::ostream&, bool, bool, bool)’: read.C:1478:33: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function ‘void Read::dumpAsCAF(std::ostream&)’: read.C:1550:33: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function ‘void Read::dumpAsMAF(std::ostream&)’: read.C:1968:33: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Read*’ [-Wformat=] sprintf(buffer, "%x", this) ; ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o ads.o ads.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o adsfacts.o adsfacts.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o align.o align.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_info.o assembly_info.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_buildcontigs.o assembly_buildcontigs.C assembly_buildcontigs.C:75:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush(); } ^ assembly_buildcontigs.C:50:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_buildcontigs.C:1238:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_buildcontigs.C:75:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush(); } ^ assembly_buildcontigs.C:1282:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush(); } ^ assembly_buildcontigs.C:1238:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_buildcontigs.C:1436:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_buildcontigs.C:1282:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush(); } ^ assembly_buildcontigs.C:1447:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush(); } ^ assembly_buildcontigs.C:1436:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_buildcontigs.C:1572:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_buildcontigs.C:1447:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush(); } ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_io.o assembly_io.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_misc.o assembly_misc.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_output.o assembly_output.C assembly_misc.C:1882:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_misc.C:52:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_misc.C:1916:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_misc.C:1882:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_pbcorrect.o assembly_pbcorrect.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_reduceskimhits.o assembly_reduceskimhits.C assembly_pbcorrect.C:58:0: warning: "CEBUG" redefined #define CEBUG(bla) { if(docebug) {cout << bla; cout.flush();}} ^ assembly_pbcorrect.C:44:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_reduceskimhits.C:1117:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_reduceskimhits.C:882:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_reduceskimhits.C:1157:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_reduceskimhits.C:1117:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_reduceskimhits.C:2784:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_reduceskimhits.C:1157:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_reduceskimhits.C:2803:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_reduceskimhits.C:2784:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_reduceskimhits.C:2807:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_reduceskimhits.C:2803:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_reduceskimhits.C:2847:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_reduceskimhits.C:2807:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_reduceskimhits.C:2852:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_reduceskimhits.C:2847:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_reduceskimhits.C:2932:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_reduceskimhits.C:2852:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_swalign.o assembly_swalign.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o contig_consensus.o contig_consensus.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o contig_covanalysis.o contig_covanalysis.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o contig_edit.o contig_edit.C contig_consensus.C: In member function ‘void Contig::makeIntelligentConsensus(std::__cxx11::string&, std::vector&, std::vector*, int32, int32, int32, int32, base_quality_t, char, bool, bool, bool)’: contig_consensus.C:2144:22: error: ‘accumulate’ is not a member of ‘std’ auto sumcounts=std::accumulate(countsofpossiblebases.begin(),countsofpossiblebases.end(),0); ^ Makefile:632: recipe for target 'contig_consensus.o' failed make[7]: *** [contig_consensus.o] Error 1 make[7]: *** Waiting for unfinished jobs.... make[7]: Leaving directory '/«PKGBUILDDIR»/src/mira' Makefile:525: recipe for target 'all' failed make[6]: *** [all] Error 2 make[6]: Leaving directory '/«PKGBUILDDIR»/src/mira' Makefile:402: recipe for target 'all-recursive' failed make[5]: *** [all-recursive] Error 1 make[5]: Leaving directory '/«PKGBUILDDIR»/src' Makefile:356: recipe for target 'all' failed make[4]: *** [all] Error 2 make[4]: Leaving directory '/«PKGBUILDDIR»/src' Makefile:414: recipe for target 'all-recursive' failed make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory '/«PKGBUILDDIR»' Makefile:361: recipe for target 'all' failed make[2]: *** [all] Error 2 make[2]: Leaving directory '/«PKGBUILDDIR»' dh_auto_build: make -j8 returned exit code 2 debian/rules:54: recipe for target 'override_dh_auto_build' failed make[1]: *** [override_dh_auto_build] Error 2 make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules:16: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20160423-2111 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: powerpc Build-Space: 148100 Build-Time: 84 Distribution: yakkety-proposed Fail-Stage: build Host Architecture: powerpc Install-Time: 211 Job: mira_4.9.5-5build1.dsc Machine Architecture: powerpc Package: mira Package-Time: 299 Source-Version: 4.9.5-5build1 Space: 148100 Status: attempted Version: 4.9.5-5build1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20160423-2111 Build needed 00:04:59, 148100k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-9621515'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-9621515/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-9621515'] Unmounting chroot for build PACKAGEBUILD-9621515... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-9621515'] Removing build PACKAGEBUILD-9621515