mira 4.9.5-5 source package in Ubuntu

Changelog

mira (4.9.5-5) unstable; urgency=medium

  * Make build reproducible; fix FTBFS on non-'C' locales

 -- Michael R. Crusoe <email address hidden>  Wed, 03 Feb 2016 06:31:56 +0000

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Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
science
Urgency:
Medium Urgency

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Series Pocket Published Component Section
Xenial release universe science

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File Size SHA-256 Checksum
mira_4.9.5-5.dsc 2.4 KiB a9d42bf8022f6f1aa83165e663205eb82fd641b79e6d9431748c0133f119dbbc
mira_4.9.5.orig.tar.bz2 10.0 MiB 07160f9847edcb5109fa9085109f73a18849473fc2afdcda1118faf3c5fc3d77
mira_4.9.5-5.debian.tar.xz 19.2 KiB 6fddf21588f650abc1e3b0300339882fdd34630f80d6beeb4b344a9799776373

Available diffs

No changes file available.

Binary packages built by this source

mira-assembler: Whole Genome Shotgun and EST Sequence Assembler

 The mira genome fragment assembler is a specialised assembler for
 sequencing projects classified as 'hard' due to high number of similar
 repeats. For expressed sequence tags (ESTs) transcripts, miraEST is
 specialised on reconstructing pristine mRNA transcripts while
 detecting and classifying single nucleotide polymorphisms (SNP)
 occurring in different variations thereof.
 .
 The assembler is routinely used for such various tasks as mutation
 detection in different cell types, similarity analysis of transcripts
 between organisms, and pristine assembly of sequences from various
 sources for oligo design in clinical microarray experiments.
 .
 The package provides the following executables:
 Binaries provided:
  * mira: for assembly of genome sequences
  * miramem: estimating memory needed to assemble projects. Realised through
    link to mira.
  * convert_project: for converting project file types into other types
  * caf2fasta, caf2gbf, caf2text, caf2html, gbf2caf and gbf2fasta are some
    frequently used file converters (realised through links to convert_project)
  * scftool: set of tools useful when working with SCF trace files
  * fastatool: set of tools useful when working with FASTA trace files
 .
 Scripts provided:
  * fasta2frag: fragmenting sequences into smaller, overlapping
    subsequences. Useful for simulating shotgun sequences. Can create
    subsequences in both directions (/default) and also paired-end sequences.
  * fastaselect: given a FASTA file (and possibly a FASTA quality file) and
    a file with names of reads, select the sequences from the input FASTA (and
    quality file) and writes them to an output FASTA
  * fastqselect: like fastaselect, only for FASTQ
  * fixACE4consed: Consed has a bug which incapacitates it from reading
    consensus tags in ACE files written by the MIRA assembler (and possibly
    other programs). This script massages an ACE file so that consed can read
    the consensus tags.

mira-assembler-dbgsym: No summary available for mira-assembler-dbgsym in ubuntu yakkety.

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mira-doc: No summary available for mira-doc in ubuntu yakkety.

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mira-examples: files to experiment with the mira assembler

 The mira genome fragment assembler is a specialised assembler for
 sequencing projects classified as 'hard' due to high number of similar
 repeats.
 .
 This package contains a series of files to exploit the functionality
 of mira.