RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux denneed04 4.2.0-25-powerpc64-smp #30~14.04.1-Ubuntu SMP Mon Jan 18 16:53:18 UTC 2016 ppc64 Buildd toolchain package versions: launchpad-buildd_137 python-lpbuildd_137 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa7 dpkg-dev_1.17.5ubuntu5.5 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1. Syncing the system clock with the buildd NTP service... 27 Jan 12:18:55 ntpdate[19029]: adjust time server 10.211.37.1 offset -0.000035 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-8903490', '/home/buildd/filecache-default/59b2027bd898a08257bdf6a14dda09a63b60b4fb'] Unpacking chroot for build PACKAGEBUILD-8903490 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-8903490'] Mounting chroot for build PACKAGEBUILD-8903490 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-8903490', 'deb http://ftpmaster.internal/ubuntu xenial main universe', 'deb http://ftpmaster.internal/ubuntu xenial-security main universe', 'deb http://ftpmaster.internal/ubuntu xenial-updates main universe', 'deb http://ftpmaster.internal/ubuntu xenial-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-8903490 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-8903490', 'powerpc'] Updating debian chroot for build PACKAGEBUILD-8903490 Get:1 http://ftpmaster.internal xenial InRelease [227 kB] Get:2 http://ftpmaster.internal xenial-security InRelease [73.5 kB] Get:3 http://ftpmaster.internal xenial-updates InRelease [73.5 kB] Get:4 http://ftpmaster.internal xenial-proposed InRelease [227 kB] Get:5 http://ftpmaster.internal xenial/main powerpc Packages [1442 kB] Get:6 http://ftpmaster.internal xenial/universe powerpc Packages [7036 kB] Get:7 http://ftpmaster.internal xenial/main Translation-en [854 kB] Get:8 http://ftpmaster.internal xenial/universe Translation-en [4825 kB] Get:9 http://ftpmaster.internal xenial-security/main powerpc Packages [28 B] Get:10 http://ftpmaster.internal xenial-security/universe powerpc Packages [28 B] Get:11 http://ftpmaster.internal xenial-security/main Translation-en [28 B] Get:12 http://ftpmaster.internal xenial-security/universe Translation-en [28 B] Get:13 http://ftpmaster.internal xenial-updates/main powerpc Packages [28 B] Get:14 http://ftpmaster.internal xenial-updates/universe powerpc Packages [28 B] Get:15 http://ftpmaster.internal xenial-updates/main Translation-en [28 B] Get:16 http://ftpmaster.internal xenial-updates/universe Translation-en [28 B] Get:17 http://ftpmaster.internal xenial-proposed/main powerpc Packages [31.4 kB] Get:18 http://ftpmaster.internal xenial-proposed/universe powerpc Packages [365 kB] Get:19 http://ftpmaster.internal xenial-proposed/main Translation-en [22.3 kB] Get:20 http://ftpmaster.internal xenial-proposed/universe Translation-en [191 kB] Fetched 15.4 MB in 17s (900 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 libprocps3 udev Use 'apt-get autoremove' to remove them. The following packages will be REMOVED: perl-modules* The following NEW packages will be installed: init-system-helpers libapt-pkg5.0 libisl15 libperl5.22 libprocps4 perl-modules-5.22 The following packages will be upgraded: advancecomp apt apt-transport-https base-files base-passwd binutils bsdutils cpp cpp-5 debconf debianutils diffutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs findutils g++ g++-5 gcc gcc-5 gcc-5-base gnupg gpgv hostname init initscripts libapparmor1 libasan2 libatomic1 libaudit-common libaudit1 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcap2-bin libcc1-0 libcomerr2 libcurl3-gnutls libdbus-1-3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfdisk1 libffi6 libgcc-5-dev libgcc1 libgcrypt20 libgmp10 libgnutls-deb0-28 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn11 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmount1 libmpfr4 libncurses5 libncursesw5 libnih-dbus1 libnih1 libp11-kit0 libpcre3 libpng12-0 librtmp1 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libusb-0.1-4 libuuid1 linux-libc-dev lsb-base make mount multiarch-support ncurses-base ncurses-bin openssl perl perl-base pkg-create-dbgsym pkgbinarymangler procps systemd systemd-sysv sysv-rc sysvinit-utils tar udev util-linux 111 upgraded, 6 newly installed, 1 to remove and 0 not upgraded. Need to get 122 MB of archives. After this operation, 270 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ xenial/main base-files powerpc 9.4ubuntu3 [62.2 kB] Get:2 http://ftpmaster.internal/ubuntu/ xenial/main bsdutils powerpc 1:2.27.1-1ubuntu3 [50.9 kB] Get:3 http://ftpmaster.internal/ubuntu/ xenial/main debianutils powerpc 4.7 [85.1 kB] Get:4 http://ftpmaster.internal/ubuntu/ xenial/main diffutils powerpc 1:3.3-3 [148 kB] Get:5 http://ftpmaster.internal/ubuntu/ xenial/main dpkg powerpc 1.18.4ubuntu1 [2058 kB] Get:6 http://ftpmaster.internal/ubuntu/ xenial/main libc6-dev powerpc 2.21-0ubuntu5 [1793 kB] Get:7 http://ftpmaster.internal/ubuntu/ xenial/main libc-dev-bin powerpc 2.21-0ubuntu5 [61.5 kB] Get:8 http://ftpmaster.internal/ubuntu/ xenial-proposed/main linux-libc-dev powerpc 4.4.0-1.15 [808 kB] Get:9 http://ftpmaster.internal/ubuntu/ xenial/main libcap2 powerpc 1:2.24-12 [12.5 kB] Get:10 http://ftpmaster.internal/ubuntu/ xenial/main libc-bin powerpc 2.21-0ubuntu5 [1272 kB] Get:11 http://ftpmaster.internal/ubuntu/ xenial/main libgomp1 powerpc 5.3.1-7ubuntu1 [51.0 kB] Get:12 http://ftpmaster.internal/ubuntu/ xenial/main libatomic1 powerpc 5.3.1-7ubuntu1 [7184 B] Get:13 http://ftpmaster.internal/ubuntu/ xenial/main libasan2 powerpc 5.3.1-7ubuntu1 [231 kB] Get:14 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5-base powerpc 5.3.1-7ubuntu1 [16.5 kB] Get:15 http://ftpmaster.internal/ubuntu/ xenial/main libgcc1 powerpc 1:5.3.1-7ubuntu1 [27.1 kB] Get:16 http://ftpmaster.internal/ubuntu/ xenial/main libubsan0 powerpc 5.3.1-7ubuntu1 [95.7 kB] Get:17 http://ftpmaster.internal/ubuntu/ xenial/main libisl15 powerpc 0.16.1-1 [428 kB] Get:18 http://ftpmaster.internal/ubuntu/ xenial/main cpp-5 powerpc 5.3.1-7ubuntu1 [26.6 MB] Get:19 http://ftpmaster.internal/ubuntu/ xenial/main libcc1-0 powerpc 5.3.1-7ubuntu1 [40.7 kB] Get:20 http://ftpmaster.internal/ubuntu/ xenial-proposed/main binutils powerpc 2.26-1ubuntu1 [2234 kB] Get:21 http://ftpmaster.internal/ubuntu/ xenial/main g++-5 powerpc 5.3.1-7ubuntu1 [28.7 MB] Get:22 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5 powerpc 5.3.1-7ubuntu1 [26.8 MB] Get:23 http://ftpmaster.internal/ubuntu/ xenial/main libgcc-5-dev powerpc 5.3.1-7ubuntu1 [500 kB] Get:24 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++-5-dev powerpc 5.3.1-7ubuntu1 [1381 kB] Get:25 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++6 powerpc 5.3.1-7ubuntu1 [401 kB] Get:26 http://ftpmaster.internal/ubuntu/ xenial/main libgmp10 powerpc 2:6.1.0+dfsg-2 [199 kB] Get:27 http://ftpmaster.internal/ubuntu/ xenial/main libmpfr4 powerpc 3.1.3-2 [175 kB] Get:28 http://ftpmaster.internal/ubuntu/ xenial/main libc6 powerpc 2.21-0ubuntu5 [5095 kB] Get:29 http://ftpmaster.internal/ubuntu/ xenial/main e2fslibs powerpc 1.42.13-1ubuntu1 [187 kB] Get:30 http://ftpmaster.internal/ubuntu/ xenial/main e2fsprogs powerpc 1.42.13-1ubuntu1 [753 kB] Get:31 http://ftpmaster.internal/ubuntu/ xenial/main findutils powerpc 4.6.0-2 [273 kB] Get:32 http://ftpmaster.internal/ubuntu/ xenial/main hostname powerpc 3.16ubuntu2 [11.3 kB] Get:33 http://ftpmaster.internal/ubuntu/ xenial-proposed/main init-system-helpers all 1.26ubuntu2 [31.2 kB] Get:34 http://ftpmaster.internal/ubuntu/ xenial/main sysvinit-utils powerpc 2.88dsf-59.3ubuntu1 [21.6 kB] Get:35 http://ftpmaster.internal/ubuntu/ xenial/main perl-modules-5.22 all 5.22.1-4 [2648 kB] Get:36 http://ftpmaster.internal/ubuntu/ xenial/main libperl5.22 powerpc 5.22.1-4 [2729 kB] Get:37 http://ftpmaster.internal/ubuntu/ xenial/main perl powerpc 5.22.1-4 [238 kB] Get:38 http://ftpmaster.internal/ubuntu/ xenial/main perl-base powerpc 5.22.1-4 [1166 kB] Get:39 http://ftpmaster.internal/ubuntu/ xenial-proposed/main init powerpc 1.26ubuntu2 [3866 B] Get:40 http://ftpmaster.internal/ubuntu/ xenial/main libsmartcols1 powerpc 2.27.1-1ubuntu3 [57.5 kB] Get:41 http://ftpmaster.internal/ubuntu/ xenial/main libuuid1 powerpc 2.27.1-1ubuntu3 [15.9 kB] Get:42 http://ftpmaster.internal/ubuntu/ xenial/main libblkid1 powerpc 2.27.1-1ubuntu3 [99.5 kB] Get:43 http://ftpmaster.internal/ubuntu/ xenial/main libfdisk1 powerpc 2.27.1-1ubuntu3 [125 kB] Get:44 http://ftpmaster.internal/ubuntu/ xenial/main debconf all 1.5.58ubuntu1 [136 kB] Get:45 http://ftpmaster.internal/ubuntu/ xenial/main sysv-rc all 2.88dsf-59.3ubuntu1 [18.2 kB] Get:46 http://ftpmaster.internal/ubuntu/ xenial/main initscripts powerpc 2.88dsf-59.3ubuntu1 [24.9 kB] Get:47 http://ftpmaster.internal/ubuntu/ xenial/main util-linux powerpc 2.27.1-1ubuntu3 [781 kB] Get:48 http://ftpmaster.internal/ubuntu/ xenial/main libudev1 powerpc 228-4ubuntu1 [52.6 kB] Get:49 http://ftpmaster.internal/ubuntu/ xenial/main udev powerpc 228-4ubuntu1 [945 kB] Get:50 http://ftpmaster.internal/ubuntu/ xenial/main libsystemd0 powerpc 228-4ubuntu1 [182 kB] Get:51 http://ftpmaster.internal/ubuntu/ xenial/main systemd powerpc 228-4ubuntu1 [3144 kB] Get:52 http://ftpmaster.internal/ubuntu/ xenial/main libpcre3 powerpc 2:8.38-1ubuntu1 [197 kB] Get:53 http://ftpmaster.internal/ubuntu/ xenial/main libselinux1 powerpc 2.4-3build1 [50.1 kB] Get:54 http://ftpmaster.internal/ubuntu/ xenial/main libtinfo5 powerpc 6.0+20151024-2ubuntu1 [69.5 kB] Get:55 http://ftpmaster.internal/ubuntu/ xenial/main libncurses5 powerpc 6.0+20151024-2ubuntu1 [80.7 kB] Get:56 http://ftpmaster.internal/ubuntu/ xenial/main libncursesw5 powerpc 6.0+20151024-2ubuntu1 [101 kB] Get:57 http://ftpmaster.internal/ubuntu/ xenial/main libprocps4 powerpc 2:3.3.10-4ubuntu2 [30.1 kB] Get:58 http://ftpmaster.internal/ubuntu/ xenial/main procps powerpc 2:3.3.10-4ubuntu2 [212 kB] Get:59 http://ftpmaster.internal/ubuntu/ xenial/main libapparmor1 powerpc 2.10-0ubuntu11 [26.8 kB] Get:60 http://ftpmaster.internal/ubuntu/ xenial/main libaudit-common all 1:2.4.5-1ubuntu2 [3884 B] Get:61 http://ftpmaster.internal/ubuntu/ xenial/main libaudit1 powerpc 1:2.4.5-1ubuntu2 [34.6 kB] Get:62 http://ftpmaster.internal/ubuntu/ xenial/main libmount1 powerpc 2.27.1-1ubuntu3 [101 kB] Get:63 http://ftpmaster.internal/ubuntu/ xenial/main libseccomp2 powerpc 2.2.3-2ubuntu3 [35.3 kB] Get:64 http://ftpmaster.internal/ubuntu/ xenial/main libcap2-bin powerpc 1:2.24-12 [19.7 kB] Get:65 http://ftpmaster.internal/ubuntu/ xenial/main lsb-base all 9.20160110 [13.5 kB] Get:66 http://ftpmaster.internal/ubuntu/ xenial/main mount powerpc 2.27.1-1ubuntu3 [115 kB] Get:67 http://ftpmaster.internal/ubuntu/ xenial/main ncurses-bin powerpc 6.0+20151024-2ubuntu1 [129 kB] Get:68 http://ftpmaster.internal/ubuntu/ xenial/main tar powerpc 1.28-2.1 [192 kB] Get:69 http://ftpmaster.internal/ubuntu/ xenial/main libapt-pkg5.0 powerpc 1.1.10 [658 kB] Get:70 http://ftpmaster.internal/ubuntu/ xenial/main apt powerpc 1.1.10 [955 kB] Get:71 http://ftpmaster.internal/ubuntu/ xenial/main gpgv powerpc 1.4.19-6ubuntu1 [145 kB] Get:72 http://ftpmaster.internal/ubuntu/ xenial/main libusb-0.1-4 powerpc 2:0.1.12-28 [15.6 kB] Get:73 http://ftpmaster.internal/ubuntu/ xenial/main gnupg powerpc 1.4.19-6ubuntu1 [579 kB] Get:74 http://ftpmaster.internal/ubuntu/ xenial/main libdebconfclient0 powerpc 0.198ubuntu1 [6314 B] Get:75 http://ftpmaster.internal/ubuntu/ xenial/main base-passwd powerpc 3.5.39 [51.1 kB] Get:76 http://ftpmaster.internal/ubuntu/ xenial/main ncurses-base all 6.0+20151024-2ubuntu1 [17.1 kB] Get:77 http://ftpmaster.internal/ubuntu/ xenial/main systemd-sysv powerpc 228-4ubuntu1 [15.5 kB] Get:78 http://ftpmaster.internal/ubuntu/ xenial/main libdbus-1-3 powerpc 1.10.6-1ubuntu1 [143 kB] Get:79 http://ftpmaster.internal/ubuntu/ xenial/main libnih-dbus1 powerpc 1.0.3-4.3ubuntu1 [13.1 kB] Get:80 http://ftpmaster.internal/ubuntu/ xenial/main libnih1 powerpc 1.0.3-4.3ubuntu1 [43.8 kB] Get:81 http://ftpmaster.internal/ubuntu/ xenial/main libcomerr2 powerpc 1.42.13-1ubuntu1 [65.5 kB] Get:82 http://ftpmaster.internal/ubuntu/ xenial/main libdevmapper1.02.1 powerpc 2:1.02.110-1ubuntu3 [120 kB] Get:83 http://ftpmaster.internal/ubuntu/ xenial/main libgpg-error0 powerpc 1.21-1 [33.4 kB] Get:84 http://ftpmaster.internal/ubuntu/ xenial/main libgcrypt20 powerpc 1.6.4-5 [306 kB] Get:85 http://ftpmaster.internal/ubuntu/ xenial/main libsepol1 powerpc 2.4-2 [155 kB] Get:86 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsemanage-common all 2.4-3build1 [6594 B] Get:87 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsemanage1 powerpc 2.4-3build1 [67.8 kB] Get:88 http://ftpmaster.internal/ubuntu/ xenial/main libss2 powerpc 1.42.13-1ubuntu1 [69.6 kB] Get:89 http://ftpmaster.internal/ubuntu/ xenial/main multiarch-support powerpc 2.21-0ubuntu5 [7182 B] Get:90 http://ftpmaster.internal/ubuntu/ xenial/main libffi6 powerpc 3.2.1-4 [17.0 kB] Get:91 http://ftpmaster.internal/ubuntu/ xenial/main libp11-kit0 powerpc 0.23.2-3 [84.8 kB] Get:92 http://ftpmaster.internal/ubuntu/ xenial/main libtasn1-6 powerpc 4.7-3 [39.4 kB] Get:93 http://ftpmaster.internal/ubuntu/ xenial/main libgnutls-deb0-28 powerpc 3.3.20-1ubuntu1 [415 kB] Get:94 http://ftpmaster.internal/ubuntu/ xenial/main libpng12-0 powerpc 1.2.54-1ubuntu1 [110 kB] Get:95 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsqlite3-0 powerpc 3.10.2-1 [348 kB] Get:96 http://ftpmaster.internal/ubuntu/ xenial/main libssl1.0.0 powerpc 1.0.2e-1ubuntu1 [720 kB] Get:97 http://ftpmaster.internal/ubuntu/ xenial/main libgssapi-krb5-2 powerpc 1.13.2+dfsg-4 [102 kB] Get:98 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5-3 powerpc 1.13.2+dfsg-4 [239 kB] Get:99 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5support0 powerpc 1.13.2+dfsg-4 [29.0 kB] Get:100 http://ftpmaster.internal/ubuntu/ xenial/main libk5crypto3 powerpc 1.13.2+dfsg-4 [81.5 kB] Get:101 http://ftpmaster.internal/ubuntu/ xenial/main libkeyutils1 powerpc 1.5.9-8ubuntu1 [9890 B] Get:102 http://ftpmaster.internal/ubuntu/ xenial/main libidn11 powerpc 1.32-3ubuntu1 [42.8 kB] Get:103 http://ftpmaster.internal/ubuntu/ xenial/main libldap-2.4-2 powerpc 2.4.42+dfsg-2ubuntu1 [141 kB] Get:104 http://ftpmaster.internal/ubuntu/ xenial/main librtmp1 powerpc 2.4+20151223.gitfa8646d-1 [50.0 kB] Get:105 http://ftpmaster.internal/ubuntu/ xenial/main libcurl3-gnutls powerpc 7.46.0-1ubuntu1 [166 kB] Get:106 http://ftpmaster.internal/ubuntu/ xenial/main apt-transport-https powerpc 1.1.10 [25.1 kB] Get:107 http://ftpmaster.internal/ubuntu/ xenial/main openssl powerpc 1.0.2e-1ubuntu1 [465 kB] Get:108 http://ftpmaster.internal/ubuntu/ xenial/main advancecomp powerpc 1.20-1 [143 kB] Get:109 http://ftpmaster.internal/ubuntu/ xenial/main cpp powerpc 4:5.2.1-16ubuntu2 [27.6 kB] Get:110 http://ftpmaster.internal/ubuntu/ xenial/main dmsetup powerpc 2:1.02.110-1ubuntu3 [52.6 kB] Get:111 http://ftpmaster.internal/ubuntu/ xenial/main dpkg-dev all 1.18.4ubuntu1 [584 kB] Get:112 http://ftpmaster.internal/ubuntu/ xenial/main libdpkg-perl all 1.18.4ubuntu1 [195 kB] Get:113 http://ftpmaster.internal/ubuntu/ xenial/main make powerpc 4.1-5 [141 kB] Get:114 http://ftpmaster.internal/ubuntu/ xenial/main gcc powerpc 4:5.2.1-16ubuntu2 [5228 B] Get:115 http://ftpmaster.internal/ubuntu/ xenial/main g++ powerpc 4:5.2.1-16ubuntu2 [1512 B] Get:116 http://ftpmaster.internal/ubuntu/ xenial/main pkg-create-dbgsym all 0.70 [9046 B] Get:117 http://ftpmaster.internal/ubuntu/ xenial/main pkgbinarymangler all 129 [43.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 122 MB in 1min 48s (1128 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11511 files and directories currently installed.) Preparing to unpack .../base-files_9.4ubuntu3_powerpc.deb ... Unpacking base-files (9.4ubuntu3) over (7.2ubuntu11) ... Setting up base-files (9.4ubuntu3) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Updating /etc/profile to current default. Updating /etc/nsswitch.conf to current default. Updating /root/.profile to current default. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11513 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.27.1-1ubuntu3_powerpc.deb ... Unpacking bsdutils (1:2.27.1-1ubuntu3) over (1:2.26.2-6ubuntu3) ... Setting up bsdutils (1:2.27.1-1ubuntu3) ... (Reading database ... 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Unpacking libgcc1:powerpc (1:5.3.1-7ubuntu1) over (1:5.2.1-22ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libgcc1:powerpc (1:5.3.1-7ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11523 files and directories currently installed.) Preparing to unpack .../libubsan0_5.3.1-7ubuntu1_powerpc.deb ... Unpacking libubsan0:powerpc (5.3.1-7ubuntu1) over (5.2.1-22ubuntu2) ... 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12087 files and directories currently installed.) Preparing to unpack .../systemd_228-4ubuntu1_powerpc.deb ... Unpacking systemd (228-4ubuntu1) over (225-1ubuntu9) ... Setting up systemd (228-4ubuntu1) ... Installing new version of config file /etc/pam.d/systemd-user ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/system.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removing obsolete conffile /etc/X11/xinit/xinitrc.d/50-systemd-user.sh ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12084 files and directories currently installed.) Preparing to unpack .../libpcre3_2%3a8.38-1ubuntu1_powerpc.deb ... Unpacking libpcre3:powerpc (2:8.38-1ubuntu1) over (2:8.35-7.1ubuntu1) ... 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Setting up libselinux1:powerpc (2.4-3build1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12084 files and directories currently installed.) Preparing to unpack .../libtinfo5_6.0+20151024-2ubuntu1_powerpc.deb ... Unpacking libtinfo5:powerpc (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libtinfo5:powerpc (6.0+20151024-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12084 files and directories currently installed.) Preparing to unpack .../libncurses5_6.0+20151024-2ubuntu1_powerpc.deb ... Unpacking libncurses5:powerpc (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libncurses5:powerpc (6.0+20151024-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12084 files and directories currently installed.) Preparing to unpack .../libncursesw5_6.0+20151024-2ubuntu1_powerpc.deb ... Unpacking libncursesw5:powerpc (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libncursesw5:powerpc (6.0+20151024-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Selecting previously unselected package libprocps4:powerpc. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12084 files and directories currently installed.) Preparing to unpack .../libprocps4_2%3a3.3.10-4ubuntu2_powerpc.deb ... Unpacking libprocps4:powerpc (2:3.3.10-4ubuntu2) ... Preparing to unpack .../procps_2%3a3.3.10-4ubuntu2_powerpc.deb ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Unpacking procps (2:3.3.10-4ubuntu2) over (1:3.3.9-1ubuntu8) ... Preparing to unpack .../libapparmor1_2.10-0ubuntu11_powerpc.deb ... Unpacking libapparmor1:powerpc (2.10-0ubuntu11) over (2.10-0ubuntu6) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libapparmor1:powerpc (2.10-0ubuntu11) ... Processing triggers for systemd (228-4ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12093 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.4.5-1ubuntu2_powerpc.deb ... Unpacking libaudit1:powerpc (1:2.4.5-1ubuntu2) over (1:2.4.2-1ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libaudit1:powerpc (1:2.4.5-1ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12093 files and directories currently installed.) Preparing to unpack .../libmount1_2.27.1-1ubuntu3_powerpc.deb ... Unpacking libmount1:powerpc (2.27.1-1ubuntu3) over (2.26.2-6ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libmount1:powerpc (2.27.1-1ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12093 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.2.3-2ubuntu3_powerpc.deb ... Unpacking libseccomp2:powerpc (2.2.3-2ubuntu3) over (2.2.3-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libseccomp2:powerpc (2.2.3-2ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12093 files and directories currently installed.) Preparing to unpack .../libcap2-bin_1%3a2.24-12_powerpc.deb ... Unpacking libcap2-bin (1:2.24-12) over (1:2.24-9) ... Setting up libcap2-bin (1:2.24-12) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12093 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.0+20151024-2ubuntu1_powerpc.deb ... Unpacking ncurses-bin (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Setting up ncurses-bin (6.0+20151024-2ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12089 files and directories currently installed.) Preparing to unpack .../tar_1.28-2.1_powerpc.deb ... Unpacking tar (1.28-2.1) over (1.27.1-2) ... Setting up tar (1.28-2.1) ... (Reading database ... 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Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12117 files and directories currently installed.) Preparing to unpack .../gpgv_1.4.19-6ubuntu1_powerpc.deb ... Unpacking gpgv (1.4.19-6ubuntu1) over (1.4.18-7ubuntu1) ... Setting up gpgv (1.4.19-6ubuntu1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12116 files and directories currently installed.) Preparing to unpack .../systemd-sysv_228-4ubuntu1_powerpc.deb ... Unpacking systemd-sysv (228-4ubuntu1) over (225-1ubuntu9) ... Setting up systemd-sysv (228-4ubuntu1) ... (Reading database ... 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Unpacking libnih1:powerpc (1.0.3-4.3ubuntu1) over (1.0.3-4ubuntu27) ... Preparing to unpack .../libcomerr2_1.42.13-1ubuntu1_powerpc.deb ... Unpacking libcomerr2:powerpc (1.42.13-1ubuntu1) over (1.42.12-1ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libcomerr2:powerpc (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12116 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.110-1ubuntu3_powerpc.deb ... Unpacking libdevmapper1.02.1:powerpc (2:1.02.110-1ubuntu3) over (2:1.02.99-1ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libdevmapper1.02.1:powerpc (2:1.02.110-1ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12116 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.21-1_powerpc.deb ... Unpacking libgpg-error0:powerpc (1.21-1) over (1.19-2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libgpg-error0:powerpc (1.21-1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12116 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.6.4-5_powerpc.deb ... Unpacking libgcrypt20:powerpc (1.6.4-5) over (1.6.3-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libgcrypt20:powerpc (1.6.4-5) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12116 files and directories currently installed.) Preparing to unpack .../libsepol1_2.4-2_powerpc.deb ... Unpacking libsepol1:powerpc (2.4-2) over (2.3-2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libsepol1:powerpc (2.4-2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12116 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.4-3build1_all.deb ... Unpacking libsemanage-common (2.4-3build1) over (2.3-1build2) ... Setting up libsemanage-common (2.4-3build1) ... Installing new version of config file /etc/selinux/semanage.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12116 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.4-3build1_powerpc.deb ... Unpacking libsemanage1:powerpc (2.4-3build1) over (2.3-1build2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libsemanage1:powerpc (2.4-3build1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12116 files and directories currently installed.) Preparing to unpack .../libss2_1.42.13-1ubuntu1_powerpc.deb ... Unpacking libss2:powerpc (1.42.13-1ubuntu1) over (1.42.12-1ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libss2:powerpc (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12116 files and directories currently installed.) Preparing to unpack .../multiarch-support_2.21-0ubuntu5_powerpc.deb ... Unpacking multiarch-support (2.21-0ubuntu5) over (2.21-0ubuntu4) ... Setting up multiarch-support (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12116 files and directories currently installed.) Preparing to unpack .../libffi6_3.2.1-4_powerpc.deb ... Unpacking libffi6:powerpc (3.2.1-4) over (3.2.1-3) ... Preparing to unpack .../libp11-kit0_0.23.2-3_powerpc.deb ... Unpacking libp11-kit0:powerpc (0.23.2-3) over (0.23.1-3) ... Preparing to unpack .../libtasn1-6_4.7-3_powerpc.deb ... Unpacking libtasn1-6:powerpc (4.7-3) over (4.5-2) ... Preparing to unpack .../libgnutls-deb0-28_3.3.20-1ubuntu1_powerpc.deb ... Unpacking libgnutls-deb0-28:powerpc (3.3.20-1ubuntu1) over (3.3.15-5ubuntu2) ... Preparing to unpack .../libpng12-0_1.2.54-1ubuntu1_powerpc.deb ... Unpacking libpng12-0:powerpc (1.2.54-1ubuntu1) over (1.2.51-0ubuntu3) ... Preparing to unpack .../libsqlite3-0_3.10.2-1_powerpc.deb ... Unpacking libsqlite3-0:powerpc (3.10.2-1) over (3.8.11.1-1) ... Preparing to unpack .../libssl1.0.0_1.0.2e-1ubuntu1_powerpc.deb ... Unpacking libssl1.0.0:powerpc (1.0.2e-1ubuntu1) over (1.0.2d-0ubuntu1) ... Preparing to unpack .../libgssapi-krb5-2_1.13.2+dfsg-4_powerpc.deb ... Unpacking libgssapi-krb5-2:powerpc (1.13.2+dfsg-4) over (1.13.2+dfsg-2) ... Preparing to unpack .../libkrb5-3_1.13.2+dfsg-4_powerpc.deb ... Unpacking libkrb5-3:powerpc (1.13.2+dfsg-4) over (1.13.2+dfsg-2) ... Preparing to unpack .../libkrb5support0_1.13.2+dfsg-4_powerpc.deb ... Unpacking libkrb5support0:powerpc (1.13.2+dfsg-4) over (1.13.2+dfsg-2) ... Preparing to unpack .../libk5crypto3_1.13.2+dfsg-4_powerpc.deb ... Unpacking libk5crypto3:powerpc (1.13.2+dfsg-4) over (1.13.2+dfsg-2) ... Preparing to unpack .../libkeyutils1_1.5.9-8ubuntu1_powerpc.deb ... Unpacking libkeyutils1:powerpc (1.5.9-8ubuntu1) over (1.5.9-5ubuntu1) ... Preparing to unpack .../libidn11_1.32-3ubuntu1_powerpc.deb ... Unpacking libidn11:powerpc (1.32-3ubuntu1) over (1.28-1ubuntu2) ... Preparing to unpack .../libldap-2.4-2_2.4.42+dfsg-2ubuntu1_powerpc.deb ... Unpacking libldap-2.4-2:powerpc (2.4.42+dfsg-2ubuntu1) over (2.4.41+dfsg-1ubuntu2) ... Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d-1_powerpc.deb ... Unpacking librtmp1:powerpc (2.4+20151223.gitfa8646d-1) over (2.4+20150115.gita107cef-1build1) ... Preparing to unpack .../libcurl3-gnutls_7.46.0-1ubuntu1_powerpc.deb ... Unpacking libcurl3-gnutls:powerpc (7.46.0-1ubuntu1) over (7.43.0-1ubuntu2) ... Preparing to unpack .../apt-transport-https_1.1.10_powerpc.deb ... Unpacking apt-transport-https (1.1.10) over (1.0.10.2ubuntu1) ... Preparing to unpack .../openssl_1.0.2e-1ubuntu1_powerpc.deb ... Unpacking openssl (1.0.2e-1ubuntu1) over (1.0.2d-0ubuntu1) ... Preparing to unpack .../advancecomp_1.20-1_powerpc.deb ... Unpacking advancecomp (1.20-1) over (1.19-1) ... Preparing to unpack .../cpp_4%3a5.2.1-16ubuntu2_powerpc.deb ... Unpacking cpp (4:5.2.1-16ubuntu2) over (4:5.2.1-3ubuntu1) ... Preparing to unpack .../dmsetup_2%3a1.02.110-1ubuntu3_powerpc.deb ... Unpacking dmsetup (2:1.02.110-1ubuntu3) over (2:1.02.99-1ubuntu1) ... Preparing to unpack .../dpkg-dev_1.18.4ubuntu1_all.deb ... Unpacking dpkg-dev (1.18.4ubuntu1) over (1.18.2ubuntu5) ... Preparing to unpack .../libdpkg-perl_1.18.4ubuntu1_all.deb ... Unpacking libdpkg-perl (1.18.4ubuntu1) over (1.18.2ubuntu5) ... Preparing to unpack .../make_4.1-5_powerpc.deb ... Unpacking make (4.1-5) over (4.0-8.2) ... Preparing to unpack .../gcc_4%3a5.2.1-16ubuntu2_powerpc.deb ... Removing old gcc doc directory. Unpacking gcc (4:5.2.1-16ubuntu2) over (4:5.2.1-3ubuntu1) ... Preparing to unpack .../g++_4%3a5.2.1-16ubuntu2_powerpc.deb ... Unpacking g++ (4:5.2.1-16ubuntu2) over (4:5.2.1-3ubuntu1) ... Preparing to unpack .../pkg-create-dbgsym_0.70_all.deb ... Unpacking pkg-create-dbgsym (0.70) over (0.69) ... Preparing to unpack .../pkgbinarymangler_129_all.deb ... Unpacking pkgbinarymangler (129) over (122) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libc-dev-bin (2.21-0ubuntu5) ... Setting up linux-libc-dev:powerpc (4.4.0-1.15) ... Setting up libc6-dev:powerpc (2.21-0ubuntu5) ... Setting up libgomp1:powerpc (5.3.1-7ubuntu1) ... Setting up libatomic1:powerpc (5.3.1-7ubuntu1) ... Setting up libasan2:powerpc (5.3.1-7ubuntu1) ... Setting up libubsan0:powerpc (5.3.1-7ubuntu1) ... Setting up libgmp10:powerpc (2:6.1.0+dfsg-2) ... Setting up libisl15:powerpc (0.16.1-1) ... Setting up libmpfr4:powerpc (3.1.3-2) ... Setting up cpp-5 (5.3.1-7ubuntu1) ... Setting up libcc1-0:powerpc (5.3.1-7ubuntu1) ... Setting up binutils (2.26-1ubuntu1) ... Setting up libgcc-5-dev:powerpc (5.3.1-7ubuntu1) ... Setting up gcc-5 (5.3.1-7ubuntu1) ... Setting up libstdc++-5-dev:powerpc (5.3.1-7ubuntu1) ... Setting up g++-5 (5.3.1-7ubuntu1) ... Setting up perl-modules-5.22 (5.22.1-4) ... Setting up libperl5.22:powerpc (5.22.1-4) ... Setting up perl (5.22.1-4) ... Setting up libprocps4:powerpc (2:3.3.10-4ubuntu2) ... Setting up procps (2:3.3.10-4ubuntu2) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up udev (228-4ubuntu1) ... Installing new version of config file /etc/init.d/udev ... addgroup: The group `input' already exists as a system group. Exiting. Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Removing obsolete conffile /etc/init.d/lvm2 ... Setting up apt (1.1.10) ... Installing new version of config file /etc/apt/apt.conf.d/01-vendor-ubuntu ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... usermod: no changes Setting up libdbus-1-3:powerpc (1.10.6-1ubuntu1) ... Setting up libnih1:powerpc (1.0.3-4.3ubuntu1) ... Setting up libnih-dbus1:powerpc (1.0.3-4.3ubuntu1) ... Setting up libffi6:powerpc (3.2.1-4) ... Setting up libp11-kit0:powerpc (0.23.2-3) ... Setting up libtasn1-6:powerpc (4.7-3) ... Setting up libgnutls-deb0-28:powerpc (3.3.20-1ubuntu1) ... Setting up libpng12-0:powerpc (1.2.54-1ubuntu1) ... Setting up libsqlite3-0:powerpc (3.10.2-1) ... Setting up libssl1.0.0:powerpc (1.0.2e-1ubuntu1) ... Setting up libkrb5support0:powerpc (1.13.2+dfsg-4) ... Setting up libk5crypto3:powerpc (1.13.2+dfsg-4) ... Setting up libkeyutils1:powerpc (1.5.9-8ubuntu1) ... Setting up libkrb5-3:powerpc (1.13.2+dfsg-4) ... Setting up libgssapi-krb5-2:powerpc (1.13.2+dfsg-4) ... Setting up libidn11:powerpc (1.32-3ubuntu1) ... Setting up libldap-2.4-2:powerpc (2.4.42+dfsg-2ubuntu1) ... Setting up librtmp1:powerpc (2.4+20151223.gitfa8646d-1) ... Setting up libcurl3-gnutls:powerpc (7.46.0-1ubuntu1) ... Setting up apt-transport-https (1.1.10) ... Setting up openssl (1.0.2e-1ubuntu1) ... Setting up advancecomp (1.20-1) ... Setting up cpp (4:5.2.1-16ubuntu2) ... Setting up dmsetup (2:1.02.110-1ubuntu3) ... Setting up libdpkg-perl (1.18.4ubuntu1) ... Setting up make (4.1-5) ... Setting up dpkg-dev (1.18.4ubuntu1) ... Setting up gcc (4:5.2.1-16ubuntu2) ... Setting up g++ (4:5.2.1-16ubuntu2) ... Setting up pkg-create-dbgsym (0.70) ... Setting up pkgbinarymangler (129) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Processing triggers for systemd (228-4ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-8903490', 'powerpc', 'xenial-proposed', '-c', 'chroot:autobuild', '--arch=powerpc', '--dist=xenial-proposed', '--purge=never', '--nolog', 'mira_4.9.5-3.dsc'] Initiating build PACKAGEBUILD-8903490 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 4.2.0-25-powerpc64-smp #30~14.04.1-Ubuntu SMP Mon Jan 18 16:53:18 UTC 2016 ppc sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on denneed04.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ mira 4.9.5-3 (powerpc) 27 Jan 2016 12:21 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: mira Version: 4.9.5-3 Source Version: 4.9.5-3 Distribution: xenial-proposed Machine Architecture: powerpc Host Architecture: powerpc Build Architecture: powerpc I: NOTICE: Log filtering will replace 'build/mira-YwYuOE/mira-4.9.5' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/mira-YwYuOE' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-8903490/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── mira_4.9.5-3.dsc exists in .; copying to chroot Check architectures ─────────────────── sh: 1: gcc: not found sbuild: warning: couldn't determine gcc system type, falling back to default (native compilation) Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-KMyAR9/apt_archive/sbuild-build-depends-core-dummy.deb'. Get:1 file:/«BUILDDIR»/resolver-KMyAR9/apt_archive ./ InRelease Ign:1 file:/«BUILDDIR»/resolver-KMyAR9/apt_archive ./ InRelease Get:2 file:/«BUILDDIR»/resolver-KMyAR9/apt_archive ./ Release [2119 B] Get:2 file:/«BUILDDIR»/resolver-KMyAR9/apt_archive ./ Release [2119 B] Get:3 file:/«BUILDDIR»/resolver-KMyAR9/apt_archive ./ Release.gpg Ign:3 file:/«BUILDDIR»/resolver-KMyAR9/apt_archive ./ Release.gpg Get:4 file:/«BUILDDIR»/resolver-KMyAR9/apt_archive ./ Sources [208 B] Get:5 file:/«BUILDDIR»/resolver-KMyAR9/apt_archive ./ Packages [530 B] Ign:4 file:/«BUILDDIR»/resolver-KMyAR9/apt_archive ./ Sources Ign:5 file:/«BUILDDIR»/resolver-KMyAR9/apt_archive ./ Packages Get:4 file:/«BUILDDIR»/resolver-KMyAR9/apt_archive ./ Sources [208 B] Get:5 file:/«BUILDDIR»/resolver-KMyAR9/apt_archive ./ Packages [530 B] Reading package lists... W: The repository 'file:/«BUILDDIR»/resolver-KMyAR9/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 libprocps3 udev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/772 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 file:/«BUILDDIR»/resolver-KMyAR9/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [772 B] debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12112 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dblatex, dh-autoreconf, autoconf-archive, docbook-xsl, libboost-all-dev, libbz2-dev, libexpat1-dev, perl, flex, vim-common, zlib1g-dev Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dblatex, dh-autoreconf, autoconf-archive, docbook-xsl, libboost-all-dev, libbz2-dev, libexpat1-dev, perl, flex, vim-common, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-mira-dummy' in '/«BUILDDIR»/resolver-WgnHHZ/apt_archive/sbuild-build-depends-mira-dummy.deb'. Get:1 file:/«BUILDDIR»/resolver-WgnHHZ/apt_archive ./ InRelease Ign:1 file:/«BUILDDIR»/resolver-WgnHHZ/apt_archive ./ InRelease Get:2 file:/«BUILDDIR»/resolver-WgnHHZ/apt_archive ./ Release [2119 B] Get:2 file:/«BUILDDIR»/resolver-WgnHHZ/apt_archive ./ Release [2119 B] Get:3 file:/«BUILDDIR»/resolver-WgnHHZ/apt_archive ./ Release.gpg Ign:3 file:/«BUILDDIR»/resolver-WgnHHZ/apt_archive ./ Release.gpg Get:4 file:/«BUILDDIR»/resolver-WgnHHZ/apt_archive ./ Sources [508 B] Get:5 file:/«BUILDDIR»/resolver-WgnHHZ/apt_archive ./ Packages [757 B] Ign:4 file:/«BUILDDIR»/resolver-WgnHHZ/apt_archive ./ Sources Ign:5 file:/«BUILDDIR»/resolver-WgnHHZ/apt_archive ./ Packages Get:4 file:/«BUILDDIR»/resolver-WgnHHZ/apt_archive ./ Sources [508 B] Get:5 file:/«BUILDDIR»/resolver-WgnHHZ/apt_archive ./ Packages [757 B] Reading package lists... W: The repository 'file:/«BUILDDIR»/resolver-WgnHHZ/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install mira build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 libprocps3 udev Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bsdmainutils dblatex debhelper dh-autoreconf dh-strip-nondeterminism docbook-xml docbook-xsl file flex fontconfig-config fonts-dejavu-core gettext gettext-base groff-base icu-devtools intltool-debian libapt-inst2.0 libarchive-zip-perl libasprintf0v5 libavahi-client3 libavahi-common-data libavahi-common3 libboost-all-dev libboost-atomic-dev libboost-atomic1.58-dev libboost-atomic1.58.0 libboost-chrono-dev libboost-chrono1.58-dev libboost-chrono1.58.0 libboost-context-dev libboost-context1.58-dev libboost-context1.58.0 libboost-coroutine-dev libboost-coroutine1.58-dev libboost-date-time-dev libboost-date-time1.58-dev libboost-date-time1.58.0 libboost-dev libboost-exception-dev libboost-exception1.58-dev libboost-filesystem-dev libboost-filesystem1.58-dev libboost-filesystem1.58.0 libboost-graph-dev libboost-graph-parallel-dev libboost-graph-parallel1.58-dev libboost-graph-parallel1.58.0 libboost-graph1.58-dev libboost-graph1.58.0 libboost-iostreams-dev libboost-iostreams1.58-dev libboost-iostreams1.58.0 libboost-locale-dev libboost-locale1.58-dev libboost-locale1.58.0 libboost-log-dev libboost-log1.58-dev libboost-log1.58.0 libboost-math-dev libboost-math1.58-dev libboost-math1.58.0 libboost-mpi-dev libboost-mpi-python-dev libboost-mpi-python1.58-dev libboost-mpi-python1.58.0 libboost-mpi1.58-dev libboost-mpi1.58.0 libboost-program-options-dev libboost-program-options1.58-dev libboost-program-options1.58.0 libboost-python-dev libboost-python1.58-dev libboost-python1.58.0 libboost-random-dev libboost-random1.58-dev libboost-random1.58.0 libboost-regex-dev libboost-regex1.58-dev libboost-regex1.58.0 libboost-serialization-dev libboost-serialization1.58-dev libboost-serialization1.58.0 libboost-signals-dev libboost-signals1.58-dev libboost-signals1.58.0 libboost-system-dev libboost-system1.58-dev libboost-system1.58.0 libboost-test-dev libboost-test1.58-dev libboost-test1.58.0 libboost-thread-dev libboost-thread1.58-dev libboost-thread1.58.0 libboost-timer-dev libboost-timer1.58-dev libboost-timer1.58.0 libboost-tools-dev libboost-wave-dev libboost-wave1.58-dev libboost-wave1.58.0 libboost1.58-dev libboost1.58-tools-dev libbz2-dev libcr0 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfl-dev libfontconfig1 libfreetype6 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libharfbuzz-icu0 libharfbuzz0b libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libice6 libicu-dev libicu55 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libkpathsea6 liblcms2-2 libltdl-dev libltdl7 libmagic1 libnuma-dev libnuma1 libopenmpi-dev libopenmpi1.6 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpoppler57 libpotrace0 libptexenc1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsm6 libsynctex1 libtexlua52 libtexluajit2 libtiff5 libtimedate-perl libtool libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxslt1.1 libxt6 libzzip-0-13 m4 man-db mime-support mpi-default-bin mpi-default-dev openmpi-bin openmpi-common po-debconf poppler-data preview-latex-style python python-apt python-apt-common python-dev python-minimal python2.7 python2.7-dev python2.7-minimal sgml-base sgml-data t1utils tex-common texlive texlive-base texlive-bibtex-extra texlive-binaries texlive-extra-utils texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-math-extra texlive-pictures ucf vim-common x11-common xdg-utils xml-core xsltproc zlib1g-dev Suggested packages: gnu-standards autoconf-doc wamerican | wordlist whois vacation docbook ghostscript graphicsmagick-imagemagick-compat | imagemagick inkscape latex-cjk-all lmodern opensp pdf-viewer texlive-lang-all texlive-lang-cyrillic texlive-xetex transfig xindy dh-make docbook-dsssl docbook-defguide dbtoepub docbook-xsl-doc-html | docbook-xsl-doc-pdf | docbook-xsl-doc-text | docbook-xsl-doc docbook-xsl-saxon fop libsaxon-java libxalan2-java libxslthl-java xalan bison gettext-doc groff libboost-doc graphviz python3 libboost1.58-doc gccxml libmpfrc++-dev libntl-dev doxygen default-jdk blcr-dkms cups-common fonts-droid texlive-lang-cjk libhwloc-contrib-plugins icu-doc liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser gfortran openmpi-checkpoint libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk python-apt-dbg python-apt-doc python2.7-doc binfmt-support sgml-base-doc perlsgml w3-recs libxml2-utils xpdf-reader | pdf-viewer perl-tk gv | postscript-viewer lacheck dvidvi dvipng purifyeps latexdiff fragmaster latexmk chktex libspreadsheet-parseexcel-perl python-pygments libfile-which-perl texlive-pstricks libtcltk-ruby prerex dot2tex gvfs-bin Recommended packages: libxml2-utils curl | wget | lynx-cur libasprintf-dev libgettextpo-dev bzip2-doc libglib2.0-data shared-mime-info xdg-user-dirs libhwloc-plugins libmail-sendmail-perl lsb-release iso-codes lmodern ruby wish libyaml-tiny-perl libfile-homedir-perl ghostscript ruby | ruby-interpreter tipa texlive-fonts-recommended-doc tex-gyre texlive-latex-base-doc texlive-latex-extra-doc texlive-latex-recommended-doc prosper tk texlive-pictures-doc vim | vim-gnome | vim-gtk | vim-athena | vim-nox | vim-tiny libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bsdmainutils dblatex debhelper dh-autoreconf dh-strip-nondeterminism docbook-xml docbook-xsl file flex fontconfig-config fonts-dejavu-core gettext gettext-base groff-base icu-devtools intltool-debian libapt-inst2.0 libarchive-zip-perl libasprintf0v5 libavahi-client3 libavahi-common-data libavahi-common3 libboost-all-dev libboost-atomic-dev libboost-atomic1.58-dev libboost-atomic1.58.0 libboost-chrono-dev libboost-chrono1.58-dev libboost-chrono1.58.0 libboost-context-dev libboost-context1.58-dev libboost-context1.58.0 libboost-coroutine-dev libboost-coroutine1.58-dev libboost-date-time-dev libboost-date-time1.58-dev libboost-date-time1.58.0 libboost-dev libboost-exception-dev libboost-exception1.58-dev libboost-filesystem-dev libboost-filesystem1.58-dev libboost-filesystem1.58.0 libboost-graph-dev libboost-graph-parallel-dev libboost-graph-parallel1.58-dev libboost-graph-parallel1.58.0 libboost-graph1.58-dev libboost-graph1.58.0 libboost-iostreams-dev libboost-iostreams1.58-dev libboost-iostreams1.58.0 libboost-locale-dev libboost-locale1.58-dev libboost-locale1.58.0 libboost-log-dev libboost-log1.58-dev libboost-log1.58.0 libboost-math-dev libboost-math1.58-dev libboost-math1.58.0 libboost-mpi-dev libboost-mpi-python-dev libboost-mpi-python1.58-dev libboost-mpi-python1.58.0 libboost-mpi1.58-dev libboost-mpi1.58.0 libboost-program-options-dev libboost-program-options1.58-dev libboost-program-options1.58.0 libboost-python-dev libboost-python1.58-dev libboost-python1.58.0 libboost-random-dev libboost-random1.58-dev libboost-random1.58.0 libboost-regex-dev libboost-regex1.58-dev libboost-regex1.58.0 libboost-serialization-dev libboost-serialization1.58-dev libboost-serialization1.58.0 libboost-signals-dev libboost-signals1.58-dev libboost-signals1.58.0 libboost-system-dev libboost-system1.58-dev libboost-system1.58.0 libboost-test-dev libboost-test1.58-dev libboost-test1.58.0 libboost-thread-dev libboost-thread1.58-dev libboost-thread1.58.0 libboost-timer-dev libboost-timer1.58-dev libboost-timer1.58.0 libboost-tools-dev libboost-wave-dev libboost-wave1.58-dev libboost-wave1.58.0 libboost1.58-dev libboost1.58-tools-dev libbz2-dev libcr0 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfl-dev libfontconfig1 libfreetype6 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libharfbuzz-icu0 libharfbuzz0b libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libice6 libicu-dev libicu55 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libkpathsea6 liblcms2-2 libltdl-dev libltdl7 libmagic1 libnuma-dev libnuma1 libopenmpi-dev libopenmpi1.6 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpoppler57 libpotrace0 libptexenc1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsm6 libsynctex1 libtexlua52 libtexluajit2 libtiff5 libtimedate-perl libtool libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxslt1.1 libxt6 libzzip-0-13 m4 man-db mime-support mpi-default-bin mpi-default-dev openmpi-bin openmpi-common po-debconf poppler-data preview-latex-style python python-apt python-apt-common python-dev python-minimal python2.7 python2.7-dev python2.7-minimal sbuild-build-depends-mira-dummy sgml-base sgml-data t1utils tex-common texlive texlive-base texlive-bibtex-extra texlive-binaries texlive-extra-utils texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-math-extra texlive-pictures ucf vim-common x11-common xdg-utils xml-core xsltproc zlib1g-dev 0 upgraded, 224 newly installed, 0 to remove and 0 not upgraded. Need to get 214 MB/214 MB of archives. After this operation, 766 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-mira-dummy Authentication warning overridden. Get:1 file:/«BUILDDIR»/resolver-WgnHHZ/apt_archive ./ sbuild-build-depends-mira-dummy 0.invalid.0 [1002 B] Get:2 http://ftpmaster.internal/ubuntu xenial/main powerpc libxau6 powerpc 1:1.0.8-1 [8284 B] Get:3 http://ftpmaster.internal/ubuntu xenial/main powerpc libxdmcp6 powerpc 1:1.1.2-1.1 [10.6 kB] Get:4 http://ftpmaster.internal/ubuntu xenial/main powerpc libxcb1 powerpc 1.11.1-1ubuntu1 [35.8 kB] Get:5 http://ftpmaster.internal/ubuntu xenial/main powerpc libx11-data all 2:1.6.3-1ubuntu2 [113 kB] Get:6 http://ftpmaster.internal/ubuntu xenial/main powerpc libx11-6 powerpc 2:1.6.3-1ubuntu2 [518 kB] Get:7 http://ftpmaster.internal/ubuntu xenial/main powerpc libxext6 powerpc 2:1.3.3-1 [26.2 kB] Get:8 http://ftpmaster.internal/ubuntu xenial/main powerpc groff-base powerpc 1.22.3-5 [1206 kB] Get:9 http://ftpmaster.internal/ubuntu xenial/main powerpc bsdmainutils powerpc 9.0.6ubuntu1 [172 kB] Get:10 http://ftpmaster.internal/ubuntu xenial/main powerpc libpipeline1 powerpc 1.4.1-2 [24.2 kB] Get:11 http://ftpmaster.internal/ubuntu xenial/main powerpc man-db powerpc 2.7.5-1 [835 kB] Get:12 http://ftpmaster.internal/ubuntu xenial/main powerpc sgml-base all 1.26+nmu4ubuntu1 [12.5 kB] Get:13 http://ftpmaster.internal/ubuntu xenial/main powerpc autoconf-archive all 20150925-1 [637 kB] Get:14 http://ftpmaster.internal/ubuntu xenial/main powerpc libsigsegv2 powerpc 2.10-4 [13.7 kB] Get:15 http://ftpmaster.internal/ubuntu xenial/main powerpc m4 powerpc 1.4.17-5 [185 kB] Get:16 http://ftpmaster.internal/ubuntu xenial/main powerpc libfl-dev powerpc 2.6.0-3 [12.6 kB] Get:17 http://ftpmaster.internal/ubuntu xenial/main powerpc flex powerpc 2.6.0-3 [277 kB] Get:18 http://ftpmaster.internal/ubuntu xenial/main powerpc fonts-dejavu-core all 2.35-1 [1039 kB] Get:19 http://ftpmaster.internal/ubuntu xenial/main powerpc ucf all 3.0033 [52.9 kB] Get:20 http://ftpmaster.internal/ubuntu xenial/main powerpc fontconfig-config all 2.11.1-0ubuntu6 [48.7 kB] Get:21 http://ftpmaster.internal/ubuntu xenial/main powerpc libexpat1 powerpc 2.1.0-7 [63.8 kB] Get:22 http://ftpmaster.internal/ubuntu xenial/main powerpc libfreetype6 powerpc 2.5.2-4ubuntu2 [271 kB] Get:23 http://ftpmaster.internal/ubuntu xenial/main powerpc libfontconfig1 powerpc 2.11.1-0ubuntu6 [119 kB] Get:24 http://ftpmaster.internal/ubuntu xenial/main powerpc libgraphite2-3 powerpc 1.2.4-3ubuntu1 [49.3 kB] Get:25 http://ftpmaster.internal/ubuntu xenial/main powerpc x11-common all 1:7.7+12ubuntu1 [22.4 kB] Get:26 http://ftpmaster.internal/ubuntu xenial/main powerpc libice6 powerpc 2:1.0.9-1 [34.8 kB] Get:27 http://ftpmaster.internal/ubuntu xenial/main powerpc libjpeg-turbo8 powerpc 1.4.2-0ubuntu2 [91.1 kB] Get:28 http://ftpmaster.internal/ubuntu xenial/main powerpc liblcms2-2 powerpc 2.6-3ubuntu2 [125 kB] Get:29 http://ftpmaster.internal/ubuntu xenial/main powerpc libltdl7 powerpc 2.4.2-1.11 [33.7 kB] Get:30 http://ftpmaster.internal/ubuntu xenial/main powerpc libsm6 powerpc 2:1.2.2-1 [14.2 kB] Get:31 http://ftpmaster.internal/ubuntu xenial/main powerpc libunistring0 powerpc 0.9.3-5.2ubuntu1 [254 kB] Get:32 http://ftpmaster.internal/ubuntu xenial/main powerpc libxpm4 powerpc 1:3.5.11-1 [30.0 kB] Get:33 http://ftpmaster.internal/ubuntu xenial/main powerpc libzzip-0-13 powerpc 0.13.62-3 [23.8 kB] Get:34 http://ftpmaster.internal/ubuntu xenial/main powerpc poppler-data all 0.4.7-7 [1495 kB] Get:35 http://ftpmaster.internal/ubuntu xenial/main powerpc libpython2.7-minimal powerpc 2.7.11-3 [335 kB] Get:36 http://ftpmaster.internal/ubuntu xenial/main powerpc python2.7-minimal powerpc 2.7.11-3 [1244 kB] Get:37 http://ftpmaster.internal/ubuntu xenial/main powerpc python-minimal powerpc 2.7.11-1 [28.1 kB] Get:38 http://ftpmaster.internal/ubuntu xenial/main powerpc mime-support all 3.59ubuntu1 [31.0 kB] Get:39 http://ftpmaster.internal/ubuntu xenial/main powerpc libpython2.7-stdlib powerpc 2.7.11-3 [1859 kB] Get:40 http://ftpmaster.internal/ubuntu xenial/main powerpc python2.7 powerpc 2.7.11-3 [217 kB] Get:41 http://ftpmaster.internal/ubuntu xenial/main powerpc libpython-stdlib powerpc 2.7.11-1 [7666 B] Get:42 http://ftpmaster.internal/ubuntu xenial/main powerpc python powerpc 2.7.11-1 [137 kB] Get:43 http://ftpmaster.internal/ubuntu xenial/main powerpc libjbig0 powerpc 2.1-3.1 [25.3 kB] Get:44 http://ftpmaster.internal/ubuntu xenial/main powerpc libmagic1 powerpc 1:5.25-2ubuntu1 [214 kB] Get:45 http://ftpmaster.internal/ubuntu xenial/main powerpc file powerpc 1:5.25-2ubuntu1 [21.1 kB] Get:46 http://ftpmaster.internal/ubuntu xenial/main powerpc libapt-inst2.0 powerpc 1.1.10 [56.0 kB] Get:47 http://ftpmaster.internal/ubuntu xenial/main powerpc vim-common powerpc 2:7.4.826-1ubuntu3 [102 kB] Get:48 http://ftpmaster.internal/ubuntu xenial/main powerpc libasprintf0v5 powerpc 0.19.6-1ubuntu1 [7078 B] Get:49 http://ftpmaster.internal/ubuntu xenial/main powerpc gettext-base powerpc 0.19.6-1ubuntu1 [45.4 kB] Get:50 http://ftpmaster.internal/ubuntu xenial/main powerpc libglib2.0-0 powerpc 2.47.5-1 [966 kB] Get:51 http://ftpmaster.internal/ubuntu xenial-proposed/main powerpc libicu55 powerpc 55.1-7 [7454 kB] Get:52 http://ftpmaster.internal/ubuntu xenial/main powerpc libnuma1 powerpc 2.0.10-1ubuntu7 [19.3 kB] Get:53 http://ftpmaster.internal/ubuntu xenial-proposed/main powerpc libxml2 powerpc 2.9.3+dfsg1-1 [573 kB] Get:54 http://ftpmaster.internal/ubuntu xenial/main powerpc python-apt-common all 1.1.0~beta1build1 [17.3 kB] Get:55 http://ftpmaster.internal/ubuntu xenial/main powerpc xml-core all 0.13+nmu2 [23.3 kB] Get:56 http://ftpmaster.internal/ubuntu xenial/main powerpc autoconf all 2.69-9 [321 kB] Get:57 http://ftpmaster.internal/ubuntu xenial/main powerpc autotools-dev all 20150820.1 [39.8 kB] Get:58 http://ftpmaster.internal/ubuntu xenial/main powerpc automake all 1:1.15-1ubuntu1 [511 kB] Get:59 http://ftpmaster.internal/ubuntu xenial/main powerpc autopoint all 0.19.6-1ubuntu1 [404 kB] Get:60 http://ftpmaster.internal/ubuntu xenial/main powerpc sgml-data all 2.0.10 [173 kB] Get:61 http://ftpmaster.internal/ubuntu xenial/main powerpc docbook-xml all 4.5-7.3 [74.4 kB] Get:62 http://ftpmaster.internal/ubuntu xenial/main powerpc python-apt powerpc 1.1.0~beta1build1 [134 kB] Get:63 http://ftpmaster.internal/ubuntu xenial/main powerpc tex-common all 6.04 [545 kB] Get:64 http://ftpmaster.internal/ubuntu xenial/main powerpc xdg-utils all 1.1.0~rc3+git20150907-1ubuntu3 [58.1 kB] Get:65 http://ftpmaster.internal/ubuntu xenial/main powerpc libkpathsea6 powerpc 2015.20150524.37493-7build4 [51.3 kB] Get:66 http://ftpmaster.internal/ubuntu xenial/main powerpc libptexenc1 powerpc 2015.20150524.37493-7build4 [33.4 kB] Get:67 http://ftpmaster.internal/ubuntu xenial/main powerpc libsynctex1 powerpc 2015.20150524.37493-7build4 [38.1 kB] Get:68 http://ftpmaster.internal/ubuntu xenial/main powerpc libtexlua52 powerpc 2015.20150524.37493-7build4 [80.3 kB] Get:69 http://ftpmaster.internal/ubuntu xenial/main powerpc libtexluajit2 powerpc 2015.20150524.37493-7build4 [202 kB] Get:70 http://ftpmaster.internal/ubuntu xenial/main powerpc t1utils powerpc 1.39-2 [48.9 kB] Get:71 http://ftpmaster.internal/ubuntu xenial/main powerpc libavahi-common-data powerpc 0.6.32~rc+dfsg-1ubuntu2 [21.7 kB] Get:72 http://ftpmaster.internal/ubuntu xenial/main powerpc libavahi-common3 powerpc 0.6.32~rc+dfsg-1ubuntu2 [20.6 kB] Get:73 http://ftpmaster.internal/ubuntu xenial/main powerpc libavahi-client3 powerpc 0.6.32~rc+dfsg-1ubuntu2 [21.7 kB] Get:74 http://ftpmaster.internal/ubuntu xenial/main powerpc libcups2 powerpc 2.1.2-2 [174 kB] Get:75 http://ftpmaster.internal/ubuntu xenial/main powerpc libjpeg8 powerpc 8c-2ubuntu8 [2200 B] Get:76 http://ftpmaster.internal/ubuntu xenial/main powerpc libtiff5 powerpc 4.0.6-1 [131 kB] Get:77 http://ftpmaster.internal/ubuntu xenial/main powerpc libcupsfilters1 powerpc 1.8.1-1 [76.6 kB] Get:78 http://ftpmaster.internal/ubuntu xenial/main powerpc libcupsimage2 powerpc 2.1.2-2 [16.1 kB] Get:79 http://ftpmaster.internal/ubuntu xenial/main powerpc libijs-0.35 powerpc 0.35-11 [14.6 kB] Get:80 http://ftpmaster.internal/ubuntu xenial/main powerpc libjbig2dec0 powerpc 0.12+20150918-1 [50.4 kB] Get:81 http://ftpmaster.internal/ubuntu xenial/main powerpc libpaper1 powerpc 1.1.24+nmu4ubuntu1 [13.4 kB] Get:82 http://ftpmaster.internal/ubuntu xenial/main powerpc libgs9-common all 9.16~dfsg~0-0ubuntu3 [2938 kB] Get:83 http://ftpmaster.internal/ubuntu xenial/main powerpc libgs9 powerpc 9.16~dfsg~0-0ubuntu3 [1801 kB] Get:84 http://ftpmaster.internal/ubuntu xenial/main powerpc libharfbuzz0b powerpc 1.0.1-1build2 [124 kB] Get:85 http://ftpmaster.internal/ubuntu xenial/main powerpc libharfbuzz-icu0 powerpc 1.0.1-1build2 [5238 B] Get:86 http://ftpmaster.internal/ubuntu xenial/main powerpc libpixman-1-0 powerpc 0.33.6-1 [148 kB] Get:87 http://ftpmaster.internal/ubuntu xenial/main powerpc libpoppler57 powerpc 0.38.0-0ubuntu1 [660 kB] Get:88 http://ftpmaster.internal/ubuntu xenial/main powerpc libpotrace0 powerpc 1.13-2 [17.0 kB] Get:89 http://ftpmaster.internal/ubuntu xenial/main powerpc libxt6 powerpc 1:1.1.5-0ubuntu1 [133 kB] Get:90 http://ftpmaster.internal/ubuntu xenial/main powerpc libxmu6 powerpc 2:1.1.2-2 [40.3 kB] Get:91 http://ftpmaster.internal/ubuntu xenial/main powerpc libxaw7 powerpc 2:1.0.13-1 [146 kB] Get:92 http://ftpmaster.internal/ubuntu xenial/main powerpc libxi6 powerpc 2:1.7.6-1 [26.6 kB] Get:93 http://ftpmaster.internal/ubuntu xenial/main powerpc texlive-binaries powerpc 2015.20150524.37493-7build4 [8663 kB] Get:94 http://ftpmaster.internal/ubuntu xenial/main powerpc libpaper-utils powerpc 1.1.24+nmu4ubuntu1 [8146 B] Get:95 http://ftpmaster.internal/ubuntu xenial/main powerpc texlive-base all 2015.20160117-1 [18.2 MB] Get:96 http://ftpmaster.internal/ubuntu xenial/main powerpc texlive-latex-base all 2015.20160117-1 [875 kB] Get:97 http://ftpmaster.internal/ubuntu xenial/main powerpc texlive-fonts-recommended all 2015.20160117-1 [5696 kB] Get:98 http://ftpmaster.internal/ubuntu xenial/main powerpc texlive-latex-recommended all 2015.20160117-1 [12.7 MB] Get:99 http://ftpmaster.internal/ubuntu xenial/main powerpc texlive all 2015.20160117-1 [14.3 kB] Get:100 http://ftpmaster.internal/ubuntu xenial/main powerpc texlive-bibtex-extra all 2015.20160117-1 [37.3 MB] Get:101 http://ftpmaster.internal/ubuntu xenial/main powerpc texlive-extra-utils all 2015.20160117-1 [11.9 MB] Get:102 http://ftpmaster.internal/ubuntu xenial/main powerpc texlive-pictures all 2015.20160117-1 [3161 kB] Get:103 http://ftpmaster.internal/ubuntu xenial/main powerpc preview-latex-style all 11.88-1.1ubuntu1 [184 kB] Get:104 http://ftpmaster.internal/ubuntu xenial/main powerpc texlive-latex-extra all 2015.20160117-1 [10.2 MB] Get:105 http://ftpmaster.internal/ubuntu xenial/main powerpc texlive-math-extra all 2015.20160117-1 [16.5 MB] Get:106 http://ftpmaster.internal/ubuntu xenial/main powerpc libxslt1.1 powerpc 1.1.28-2.1 [128 kB] Get:107 http://ftpmaster.internal/ubuntu xenial/main powerpc xsltproc powerpc 1.1.28-2.1 [13.1 kB] Get:108 http://ftpmaster.internal/ubuntu xenial/main powerpc dblatex all 0.3.7-1 [1452 kB] Get:109 http://ftpmaster.internal/ubuntu xenial/main powerpc libcroco3 powerpc 0.6.11-1 [69.3 kB] Get:110 http://ftpmaster.internal/ubuntu xenial/main powerpc gettext powerpc 0.19.6-1ubuntu1 [1004 kB] Get:111 http://ftpmaster.internal/ubuntu xenial/main powerpc intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:112 http://ftpmaster.internal/ubuntu xenial/main powerpc po-debconf all 1.0.19 [234 kB] Get:113 http://ftpmaster.internal/ubuntu xenial/main powerpc libarchive-zip-perl all 1.56-2 [84.1 kB] Get:114 http://ftpmaster.internal/ubuntu xenial/main powerpc libfile-stripnondeterminism-perl all 0.014-1 [10.1 kB] Get:115 http://ftpmaster.internal/ubuntu xenial/main powerpc libtimedate-perl all 2.3000-2 [37.5 kB] Get:116 http://ftpmaster.internal/ubuntu xenial/main powerpc dh-strip-nondeterminism all 0.014-1 [5596 B] Get:117 http://ftpmaster.internal/ubuntu xenial/main powerpc debhelper all 9.20160115ubuntu2 [740 kB] Get:118 http://ftpmaster.internal/ubuntu xenial/main powerpc libtool all 2.4.2-1.11 [180 kB] Get:119 http://ftpmaster.internal/ubuntu xenial/main powerpc dh-autoreconf all 10 [15.3 kB] Get:120 http://ftpmaster.internal/ubuntu xenial/main powerpc docbook-xsl all 1.79.1+dfsg-1 [1077 kB] Get:121 http://ftpmaster.internal/ubuntu xenial-proposed/main powerpc icu-devtools powerpc 55.1-7 [159 kB] Get:122 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [6233 kB] Get:123 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-dev powerpc 1.58.0.1 [3202 B] Get:124 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost1.58-tools-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [1066 kB] Get:125 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-tools-dev powerpc 1.58.0.1 [3032 B] Get:126 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-atomic1.58.0 powerpc 1.58.0+dfsg-4.1ubuntu1 [7452 B] Get:127 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-atomic1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [5098 B] Get:128 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-atomic-dev powerpc 1.58.0.1 [3166 B] Get:129 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-system1.58.0 powerpc 1.58.0+dfsg-4.1ubuntu1 [9452 B] Get:130 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-chrono1.58.0 powerpc 1.58.0+dfsg-4.1ubuntu1 [13.3 kB] Get:131 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-chrono1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [15.0 kB] Get:132 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-chrono-dev powerpc 1.58.0.1 [3484 B] Get:133 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-thread1.58.0 powerpc 1.58.0+dfsg-4.1ubuntu1 [44.8 kB] Get:134 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-context1.58.0 powerpc 1.58.0+dfsg-4.1ubuntu1 [18.0 kB] Get:135 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-context1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [18.1 kB] Get:136 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-context-dev powerpc 1.58.0.1 [3058 B] Get:137 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-coroutine1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [19.7 kB] Get:138 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-coroutine-dev powerpc 1.58.0.1 [3140 B] Get:139 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-date-time1.58.0 powerpc 1.58.0+dfsg-4.1ubuntu1 [20.2 kB] Get:140 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-serialization1.58.0 powerpc 1.58.0+dfsg-4.1ubuntu1 [108 kB] Get:141 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-serialization1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [130 kB] Get:142 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-date-time1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [26.2 kB] Get:143 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-date-time-dev powerpc 1.58.0.1 [2862 B] Get:144 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-exception1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [4470 B] Get:145 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-exception-dev powerpc 1.58.0.1 [2854 B] Get:146 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-filesystem1.58.0 powerpc 1.58.0+dfsg-4.1ubuntu1 [37.6 kB] Get:147 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-system1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [9208 B] Get:148 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-filesystem1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [46.4 kB] Get:149 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-filesystem-dev powerpc 1.58.0.1 [2896 B] Get:150 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-regex1.58.0 powerpc 1.58.0+dfsg-4.1ubuntu1 [233 kB] Get:151 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-graph1.58.0 powerpc 1.58.0+dfsg-4.1ubuntu1 [90.1 kB] Get:152 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-test1.58.0 powerpc 1.58.0+dfsg-4.1ubuntu1 [165 kB] Get:153 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-test1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [201 kB] Get:154 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-graph1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [96.0 kB] Get:155 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-graph-dev powerpc 1.58.0.1 [2956 B] Get:156 http://ftpmaster.internal/ubuntu xenial/universe powerpc libcr0 powerpc 0.8.5-2.2 [17.6 kB] Get:157 http://ftpmaster.internal/ubuntu xenial/universe powerpc libhwloc5 powerpc 1.11.2-2 [84.8 kB] Get:158 http://ftpmaster.internal/ubuntu xenial/main powerpc libibverbs1 powerpc 1.1.8-1.1ubuntu1 [23.3 kB] Get:159 http://ftpmaster.internal/ubuntu xenial/universe powerpc libopenmpi1.6 powerpc 1.6.5-11 [1199 kB] Get:160 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-mpi1.58.0 powerpc 1.58.0+dfsg-4.1ubuntu1 [47.2 kB] Get:161 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-graph-parallel1.58.0 powerpc 1.58.0+dfsg-4.1ubuntu1 [68.0 kB] Get:162 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-graph-parallel1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [69.9 kB] Get:163 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-graph-parallel-dev powerpc 1.58.0.1 [2996 B] Get:164 http://ftpmaster.internal/ubuntu xenial-proposed/main powerpc libicu-dev powerpc 55.1-7 [8362 kB] Get:165 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-regex1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [272 kB] Get:166 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-iostreams1.58.0 powerpc 1.58.0+dfsg-4.1ubuntu1 [28.8 kB] Get:167 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-iostreams1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [33.9 kB] Get:168 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-iostreams-dev powerpc 1.58.0.1 [2850 B] Get:169 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-locale1.58.0 powerpc 1.58.0+dfsg-4.1ubuntu1 [226 kB] Get:170 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-locale1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [305 kB] Get:171 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-locale-dev powerpc 1.58.0.1 [3196 B] Get:172 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-log1.58.0 powerpc 1.58.0+dfsg-4.1ubuntu1 [380 kB] Get:173 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-thread1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [46.3 kB] Get:174 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-log1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [472 kB] Get:175 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-log-dev powerpc 1.58.0.1 [3050 B] Get:176 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-math1.58.0 powerpc 1.58.0+dfsg-4.1ubuntu1 [328 kB] Get:177 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-math1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [725 kB] Get:178 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-math-dev powerpc 1.58.0.1 [3060 B] Get:179 http://ftpmaster.internal/ubuntu xenial/universe powerpc openmpi-common all 1.6.5-11 [101 kB] Get:180 http://ftpmaster.internal/ubuntu xenial/main powerpc libibverbs-dev powerpc 1.1.8-1.1ubuntu1 [75.8 kB] Get:181 http://ftpmaster.internal/ubuntu xenial/main powerpc libnuma-dev powerpc 2.0.10-1ubuntu7 [30.2 kB] Get:182 http://ftpmaster.internal/ubuntu xenial/main powerpc libltdl-dev powerpc 2.4.2-1.11 [157 kB] Get:183 http://ftpmaster.internal/ubuntu xenial/universe powerpc libhwloc-dev powerpc 1.11.2-2 [142 kB] Get:184 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powerpc 1.58.0+dfsg-4.1ubuntu1 [23.3 kB] Get:193 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-mpi-python-dev powerpc 1.58.0.1 [2982 B] Get:194 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-program-options1.58.0 powerpc 1.58.0+dfsg-4.1ubuntu1 [127 kB] Get:195 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-program-options1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [154 kB] Get:196 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-program-options-dev powerpc 1.58.0.1 [2878 B] Get:197 http://ftpmaster.internal/ubuntu xenial/main powerpc libpython2.7 powerpc 2.7.11-3 [906 kB] Get:198 http://ftpmaster.internal/ubuntu xenial/main powerpc libexpat1-dev powerpc 2.1.0-7 [114 kB] Get:199 http://ftpmaster.internal/ubuntu xenial/main powerpc libpython2.7-dev powerpc 2.7.11-3 [27.3 MB] Get:200 http://ftpmaster.internal/ubuntu xenial/main powerpc libpython-dev powerpc 2.7.11-1 [7730 B] Get:201 http://ftpmaster.internal/ubuntu xenial/main powerpc python2.7-dev powerpc 2.7.11-3 [277 kB] Get:202 http://ftpmaster.internal/ubuntu xenial/main powerpc python-dev powerpc 2.7.11-1 [1172 B] Get:203 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-python1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [146 kB] Get:204 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-python-dev powerpc 1.58.0.1 [3242 B] Get:205 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-random1.58.0 powerpc 1.58.0+dfsg-4.1ubuntu1 [11.4 kB] Get:206 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-random1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [10.7 kB] Get:207 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-random-dev powerpc 1.58.0.1 [2862 B] Get:208 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-regex-dev powerpc 1.58.0.1 [3116 B] Get:209 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-serialization-dev powerpc 1.58.0.1 [3090 B] Get:210 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-signals1.58.0 powerpc 1.58.0+dfsg-4.1ubuntu1 [30.9 kB] Get:211 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-signals1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [32.9 kB] Get:212 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-signals-dev powerpc 1.58.0.1 [2926 B] Get:213 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-system-dev powerpc 1.58.0.1 [3004 B] Get:214 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-test-dev powerpc 1.58.0.1 [2896 B] Get:215 http://ftpmaster.internal/ubuntu xenial/main powerpc libboost-thread-dev powerpc 1.58.0.1 [2888 B] Get:216 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-timer1.58.0 powerpc 1.58.0+dfsg-4.1ubuntu1 [10.8 kB] Get:217 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-timer1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [10.9 kB] Get:218 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-timer-dev powerpc 1.58.0.1 [2978 B] Get:219 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-wave1.58.0 powerpc 1.58.0+dfsg-4.1ubuntu1 [168 kB] Get:220 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-wave1.58-dev powerpc 1.58.0+dfsg-4.1ubuntu1 [220 kB] Get:221 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-wave-dev powerpc 1.58.0.1 [2896 B] Get:222 http://ftpmaster.internal/ubuntu xenial/universe powerpc libboost-all-dev powerpc 1.58.0.1 [2222 B] Get:223 http://ftpmaster.internal/ubuntu xenial/main powerpc libbz2-dev powerpc 1.0.6-8 [30.5 kB] Get:224 http://ftpmaster.internal/ubuntu xenial/main powerpc zlib1g-dev powerpc 1:1.2.8.dfsg-2ubuntu4 [163 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 214 MB in 2min 18s (1538 kB/s) Selecting previously unselected package libxau6:powerpc. 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Creating config file /etc/papersize with new version Setting up libgs9-common (9.16~dfsg~0-0ubuntu3) ... update-alternatives: using /usr/share/ghostscript/9.16 to provide /usr/share/ghostscript/current (ghostscript-current) in auto mode Setting up libgs9 (9.16~dfsg~0-0ubuntu3) ... Setting up libharfbuzz0b:powerpc (1.0.1-1build2) ... Setting up libharfbuzz-icu0:powerpc (1.0.1-1build2) ... Setting up libpixman-1-0:powerpc (0.33.6-1) ... Setting up libpoppler57:powerpc (0.38.0-0ubuntu1) ... Setting up libpotrace0 (1.13-2) ... Setting up libxt6:powerpc (1:1.1.5-0ubuntu1) ... Setting up libxmu6:powerpc (2:1.1.2-2) ... Setting up libxaw7:powerpc (2:1.0.13-1) ... Setting up libxi6:powerpc (2:1.7.6-1) ... Setting up texlive-binaries (2015.20150524.37493-7build4) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ... Setting up preview-latex-style (11.88-1.1ubuntu1) ... Setting up libxslt1.1:powerpc (1.1.28-2.1) ... Setting up xsltproc (1.1.28-2.1) ... Setting up libcroco3:powerpc (0.6.11-1) ... Setting up gettext (0.19.6-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.19) ... Setting up libarchive-zip-perl (1.56-2) ... Setting up libfile-stripnondeterminism-perl (0.014-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libtool (2.4.2-1.11) ... Setting up icu-devtools (55.1-7) ... Setting up libboost1.58-dev:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-dev:powerpc (1.58.0.1) ... 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Setting up libboost-date-time1.58.0:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-serialization1.58.0:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-serialization1.58-dev:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-date-time1.58-dev:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-date-time-dev:powerpc (1.58.0.1) ... Setting up libboost-exception1.58-dev:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-exception-dev:powerpc (1.58.0.1) ... Setting up libboost-filesystem1.58.0:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-system1.58-dev:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-filesystem1.58-dev:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-filesystem-dev:powerpc (1.58.0.1) ... Setting up libboost-regex1.58.0:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-graph1.58.0:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-test1.58.0:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-test1.58-dev:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-graph1.58-dev:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-graph-dev:powerpc (1.58.0.1) ... Setting up libcr0 (0.8.5-2.2) ... Setting up libhwloc5:powerpc (1.11.2-2) ... Setting up libibverbs1 (1.1.8-1.1ubuntu1) ... Setting up libopenmpi1.6 (1.6.5-11) ... Setting up libboost-mpi1.58.0 (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-graph-parallel1.58.0 (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-graph-parallel1.58-dev (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-graph-parallel-dev (1.58.0.1) ... Setting up libicu-dev:powerpc (55.1-7) ... Setting up libboost-regex1.58-dev:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-iostreams1.58.0:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-iostreams1.58-dev:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-iostreams-dev:powerpc (1.58.0.1) ... Setting up libboost-locale1.58.0:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-locale1.58-dev:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-locale-dev:powerpc (1.58.0.1) ... Setting up libboost-log1.58.0 (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-thread1.58-dev:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-log1.58-dev (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-log-dev (1.58.0.1) ... Setting up libboost-math1.58.0:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-math1.58-dev:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-math-dev:powerpc (1.58.0.1) ... Setting up openmpi-common (1.6.5-11) ... Setting up libibverbs-dev (1.1.8-1.1ubuntu1) ... Setting up libnuma-dev:powerpc (2.0.10-1ubuntu7) ... Setting up libltdl-dev:powerpc (2.4.2-1.11) ... Setting up libhwloc-dev:powerpc (1.11.2-2) ... Setting up libopenmpi-dev (1.6.5-11) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up mpi-default-dev (1.0.2+nmu2) ... Setting up libboost-mpi1.58-dev (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-mpi-dev (1.58.0.1) ... Setting up libboost-python1.58.0 (1.58.0+dfsg-4.1ubuntu1) ... Setting up openmpi-bin (1.6.5-11) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode Setting up mpi-default-bin (1.0.2+nmu2) ... Setting up libboost-mpi-python1.58.0 (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-mpi-python1.58-dev (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-mpi-python-dev (1.58.0.1) ... Setting up libboost-program-options1.58.0:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-program-options1.58-dev:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-program-options-dev:powerpc (1.58.0.1) ... Setting up libpython2.7:powerpc (2.7.11-3) ... Setting up libexpat1-dev:powerpc (2.1.0-7) ... Setting up libpython2.7-dev:powerpc (2.7.11-3) ... Setting up libpython-dev:powerpc (2.7.11-1) ... Setting up python2.7-dev (2.7.11-3) ... Setting up python-dev (2.7.11-1) ... Setting up libboost-python1.58-dev (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-python-dev (1.58.0.1) ... Setting up libboost-random1.58.0:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-random1.58-dev:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-random-dev:powerpc (1.58.0.1) ... Setting up libboost-regex-dev:powerpc (1.58.0.1) ... Setting up libboost-serialization-dev:powerpc (1.58.0.1) ... Setting up libboost-signals1.58.0:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-signals1.58-dev:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-signals-dev:powerpc (1.58.0.1) ... Setting up libboost-system-dev:powerpc (1.58.0.1) ... Setting up libboost-test-dev:powerpc (1.58.0.1) ... Setting up libboost-thread-dev:powerpc (1.58.0.1) ... Setting up libboost-timer1.58.0:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-timer1.58-dev:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-timer-dev:powerpc (1.58.0.1) ... Setting up libboost-wave1.58.0:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-wave1.58-dev:powerpc (1.58.0+dfsg-4.1ubuntu1) ... Setting up libboost-wave-dev:powerpc (1.58.0.1) ... Setting up libboost-all-dev (1.58.0.1) ... Setting up libbz2-dev:powerpc (1.0.6-8) ... Setting up zlib1g-dev:powerpc (1:1.2.8.dfsg-2ubuntu4) ... Processing triggers for sgml-base (1.26+nmu4ubuntu1) ... Setting up sgml-data (2.0.10) ... Setting up docbook-xsl (1.79.1+dfsg-1) ... Processing triggers for tex-common (6.04) ... update-language: texlive-base not installed and configured, doing nothing! texlive-base is not ready, skipping fmtutil-sys --all call Setting up texlive-base (2015.20160117-1) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Processing triggers for sgml-base (1.26+nmu4ubuntu1) ... Setting up docbook-xml (4.5-7.3) ... Processing triggers for tex-common (6.04) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up texlive-fonts-recommended (2015.20160117-1) ... Setting up texlive-latex-base (2015.20160117-1) ... Processing triggers for tex-common (6.04) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up texlive-bibtex-extra (2015.20160117-1) ... Setting up texlive-extra-utils (2015.20160117-1) ... Setting up texlive-math-extra (2015.20160117-1) ... Setting up texlive-latex-recommended (2015.20160117-1) ... Setting up texlive (2015.20160117-1) ... Setting up texlive-pictures (2015.20160117-1) ... Processing triggers for tex-common (6.04) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up texlive-latex-extra (2015.20160117-1) ... Processing triggers for tex-common (6.04) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Processing triggers for sgml-base (1.26+nmu4ubuntu1) ... Setting up dblatex (0.3.7-1) ... Setting up dh-strip-nondeterminism (0.014-1) ... Setting up debhelper (9.20160115ubuntu2) ... Setting up dh-autoreconf (10) ... Setting up sbuild-build-depends-mira-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Processing triggers for systemd (228-4ubuntu1) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 4.2.0-25-powerpc64-smp powerpc (ppc) Toolchain package versions: binutils_2.26-1ubuntu1 dpkg-dev_1.18.4ubuntu1 g++-5_5.3.1-7ubuntu1 gcc-5_5.3.1-7ubuntu1 libc6-dev_2.21-0ubuntu5 libstdc++-5-dev_5.3.1-7ubuntu1 libstdc++6_5.3.1-7ubuntu1 linux-libc-dev_4.4.0-1.15 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.1.10 apt-transport-https_1.1.10 autoconf_2.69-9 autoconf-archive_20150925-1 automake_1:1.15-1ubuntu1 autopoint_0.19.6-1ubuntu1 autotools-dev_20150820.1 base-files_9.4ubuntu3 base-passwd_3.5.39 bash_4.3-14ubuntu1 binutils_2.26-1ubuntu1 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.27.1-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 coreutils_8.23-4ubuntu2 cpp_4:5.2.1-16ubuntu2 cpp-5_5.3.1-7ubuntu1 dash_0.5.7-4ubuntu2 dblatex_0.3.7-1 debconf_1.5.58ubuntu1 debhelper_9.20160115ubuntu2 debianutils_4.7 dh-autoreconf_10 dh-strip-nondeterminism_0.014-1 diffutils_1:3.3-3 dmsetup_2:1.02.110-1ubuntu3 docbook-xml_4.5-7.3 docbook-xsl_1.79.1+dfsg-1 dpkg_1.18.4ubuntu1 dpkg-dev_1.18.4ubuntu1 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.6.0-2 flex_2.6.0-3 fontconfig-config_2.11.1-0ubuntu6 fonts-dejavu-core_2.35-1 g++_4:5.2.1-16ubuntu2 g++-5_5.3.1-7ubuntu1 gcc_4:5.2.1-16ubuntu2 gcc-5_5.3.1-7ubuntu1 gcc-5-base_5.3.1-7ubuntu1 gettext_0.19.6-1ubuntu1 gettext-base_0.19.6-1ubuntu1 gnupg_1.4.19-6ubuntu1 gpgv_1.4.19-6ubuntu1 grep_2.21-2 groff-base_1.22.3-5 gzip_1.6-4ubuntu1 hostname_3.16ubuntu2 icu-devtools_55.1-7 init_1.26ubuntu2 init-system-helpers_1.26ubuntu2 initscripts_2.88dsf-59.3ubuntu1 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-2 libapparmor1_2.10-0ubuntu11 libapt-inst2.0_1.1.10 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libboost-date-time1.58.0_1.58.0+dfsg-4.1ubuntu1 libboost-dev_1.58.0.1 libboost-exception-dev_1.58.0.1 libboost-exception1.58-dev_1.58.0+dfsg-4.1ubuntu1 libboost-filesystem-dev_1.58.0.1 libboost-filesystem1.58-dev_1.58.0+dfsg-4.1ubuntu1 libboost-filesystem1.58.0_1.58.0+dfsg-4.1ubuntu1 libboost-graph-dev_1.58.0.1 libboost-graph-parallel-dev_1.58.0.1 libboost-graph-parallel1.58-dev_1.58.0+dfsg-4.1ubuntu1 libboost-graph-parallel1.58.0_1.58.0+dfsg-4.1ubuntu1 libboost-graph1.58-dev_1.58.0+dfsg-4.1ubuntu1 libboost-graph1.58.0_1.58.0+dfsg-4.1ubuntu1 libboost-iostreams-dev_1.58.0.1 libboost-iostreams1.58-dev_1.58.0+dfsg-4.1ubuntu1 libboost-iostreams1.58.0_1.58.0+dfsg-4.1ubuntu1 libboost-locale-dev_1.58.0.1 libboost-locale1.58-dev_1.58.0+dfsg-4.1ubuntu1 libboost-locale1.58.0_1.58.0+dfsg-4.1ubuntu1 libboost-log-dev_1.58.0.1 libboost-log1.58-dev_1.58.0+dfsg-4.1ubuntu1 libboost-log1.58.0_1.58.0+dfsg-4.1ubuntu1 libboost-math-dev_1.58.0.1 libboost-math1.58-dev_1.58.0+dfsg-4.1ubuntu1 libboost-math1.58.0_1.58.0+dfsg-4.1ubuntu1 libboost-mpi-dev_1.58.0.1 libboost-mpi-python-dev_1.58.0.1 libboost-mpi-python1.58-dev_1.58.0+dfsg-4.1ubuntu1 libboost-mpi-python1.58.0_1.58.0+dfsg-4.1ubuntu1 libboost-mpi1.58-dev_1.58.0+dfsg-4.1ubuntu1 libboost-mpi1.58.0_1.58.0+dfsg-4.1ubuntu1 libboost-program-options-dev_1.58.0.1 libboost-program-options1.58-dev_1.58.0+dfsg-4.1ubuntu1 libboost-program-options1.58.0_1.58.0+dfsg-4.1ubuntu1 libboost-python-dev_1.58.0.1 libboost-python1.58-dev_1.58.0+dfsg-4.1ubuntu1 libboost-python1.58.0_1.58.0+dfsg-4.1ubuntu1 libboost-random-dev_1.58.0.1 libboost-random1.58-dev_1.58.0+dfsg-4.1ubuntu1 libboost-random1.58.0_1.58.0+dfsg-4.1ubuntu1 libboost-regex-dev_1.58.0.1 libboost-regex1.58-dev_1.58.0+dfsg-4.1ubuntu1 libboost-regex1.58.0_1.58.0+dfsg-4.1ubuntu1 libboost-serialization-dev_1.58.0.1 libboost-serialization1.58-dev_1.58.0+dfsg-4.1ubuntu1 libboost-serialization1.58.0_1.58.0+dfsg-4.1ubuntu1 libboost-signals-dev_1.58.0.1 libboost-signals1.58-dev_1.58.0+dfsg-4.1ubuntu1 libboost-signals1.58.0_1.58.0+dfsg-4.1ubuntu1 libboost-system-dev_1.58.0.1 libboost-system1.58-dev_1.58.0+dfsg-4.1ubuntu1 libboost-system1.58.0_1.58.0+dfsg-4.1ubuntu1 libboost-test-dev_1.58.0.1 libboost-test1.58-dev_1.58.0+dfsg-4.1ubuntu1 libboost-test1.58.0_1.58.0+dfsg-4.1ubuntu1 libboost-thread-dev_1.58.0.1 libboost-thread1.58-dev_1.58.0+dfsg-4.1ubuntu1 libboost-thread1.58.0_1.58.0+dfsg-4.1ubuntu1 libboost-timer-dev_1.58.0.1 libboost-timer1.58-dev_1.58.0+dfsg-4.1ubuntu1 libboost-timer1.58.0_1.58.0+dfsg-4.1ubuntu1 libboost-tools-dev_1.58.0.1 libboost-wave-dev_1.58.0.1 libboost-wave1.58-dev_1.58.0+dfsg-4.1ubuntu1 libboost-wave1.58.0_1.58.0+dfsg-4.1ubuntu1 libboost1.58-dev_1.58.0+dfsg-4.1ubuntu1 libboost1.58-tools-dev_1.58.0+dfsg-4.1ubuntu1 libbz2-1.0_1.0.6-8 libbz2-dev_1.0.6-8 libc-bin_2.21-0ubuntu5 libc-dev-bin_2.21-0ubuntu5 libc6_2.21-0ubuntu5 libc6-dev_2.21-0ubuntu5 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-7ubuntu1 libcomerr2_1.42.13-1ubuntu1 libcr0_0.8.5-2.2 libcroco3_0.6.11-1 libcryptsetup4_2:1.6.6-5ubuntu2 libcups2_2.1.2-2 libcupsfilters1_1.8.1-1 libcupsimage2_2.1.2-2 libcurl3-gnutls_7.46.0-1ubuntu1 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1ubuntu1 libdebconfclient0_0.198ubuntu1 libdevmapper1.02.1_2:1.02.110-1ubuntu3 libdpkg-perl_1.18.4ubuntu1 libexpat1_2.1.0-7 libexpat1-dev_2.1.0-7 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.27.1-1ubuntu3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.014-1 libfl-dev_2.6.0-3 libfontconfig1_2.11.1-0ubuntu6 libfreetype6_2.5.2-4ubuntu2 libgcc-5-dev_5.3.1-7ubuntu1 libgcc1_1:5.3.1-7ubuntu1 libgcrypt20_1.6.4-5 libgdbm3_1.8.3-13.1 libglib2.0-0_2.47.5-1 libgmp10_2:6.1.0+dfsg-2 libgnutls-deb0-28_3.3.20-1ubuntu1 libgomp1_5.3.1-7ubuntu1 libgpg-error0_1.21-1 libgraphite2-3_1.2.4-3ubuntu1 libgs9_9.16~dfsg~0-0ubuntu3 libgs9-common_9.16~dfsg~0-0ubuntu3 libgssapi-krb5-2_1.13.2+dfsg-4 libgssapi3-heimdal_1.6~rc2+dfsg-10ubuntu1 libharfbuzz-icu0_1.0.1-1build2 libharfbuzz0b_1.0.1-1build2 libhcrypto4-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimbase1-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimntlm0-heimdal_1.6~rc2+dfsg-10ubuntu1 libhogweed4_3.1.1-4 libhwloc-dev_1.11.2-2 libhwloc5_1.11.2-2 libhx509-5-heimdal_1.6~rc2+dfsg-10ubuntu1 libibverbs-dev_1.1.8-1.1ubuntu1 libibverbs1_1.1.8-1.1ubuntu1 libice6_2:1.0.9-1 libicu-dev_55.1-7 libicu55_55.1-7 libidn11_1.32-3ubuntu1 libijs-0.35_0.35-11 libisl13_0.14-2 libisl15_0.16.1-1 libjbig0_2.1-3.1 libjbig2dec0_0.12+20150918-1 libjpeg-turbo8_1.4.2-0ubuntu2 libjpeg8_8c-2ubuntu8 libk5crypto3_1.13.2+dfsg-4 libkeyutils1_1.5.9-8ubuntu1 libkmod2_21-1ubuntu1 libkpathsea6_2015.20150524.37493-7build4 libkrb5-26-heimdal_1.6~rc2+dfsg-10ubuntu1 libkrb5-3_1.13.2+dfsg-4 libkrb5support0_1.13.2+dfsg-4 liblcms2-2_2.6-3ubuntu2 libldap-2.4-2_2.4.42+dfsg-2ubuntu1 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 libltdl-dev_2.4.2-1.11 libltdl7_2.4.2-1.11 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.25-2ubuntu1 libmount1_2.27.1-1ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.3-2 libncurses5_6.0+20151024-2ubuntu1 libncursesw5_6.0+20151024-2ubuntu1 libnettle6_3.1.1-4 libnih-dbus1_1.0.3-4.3ubuntu1 libnih1_1.0.3-4.3ubuntu1 libnuma-dev_2.0.10-1ubuntu7 libnuma1_2.0.10-1ubuntu7 libopenmpi-dev_1.6.5-11 libopenmpi1.6_1.6.5-11 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.1ubuntu3 libpam-modules-bin_1.1.8-3.1ubuntu3 libpam-runtime_1.1.8-3.1ubuntu3 libpam0g_1.1.8-3.1ubuntu3 libpaper-utils_1.1.24+nmu4ubuntu1 libpaper1_1.1.24+nmu4ubuntu1 libpcre3_2:8.38-1ubuntu1 libperl5.22_5.22.1-4 libpipeline1_1.4.1-2 libpixman-1-0_0.33.6-1 libpng12-0_1.2.54-1ubuntu1 libpoppler57_0.38.0-0ubuntu1 libpotrace0_1.13-2 libprocps3_1:3.3.9-1ubuntu8 libprocps4_2:3.3.10-4ubuntu2 libptexenc1_2015.20150524.37493-7build4 libpython-dev_2.7.11-1 libpython-stdlib_2.7.11-1 libpython2.7_2.7.11-3 libpython2.7-dev_2.7.11-3 libpython2.7-minimal_2.7.11-3 libpython2.7-stdlib_2.7.11-3 libreadline6_6.3-8ubuntu1 libroken18-heimdal_1.6~rc2+dfsg-10ubuntu1 librtmp1_2.4+20151223.gitfa8646d-1 libsasl2-2_2.1.26.dfsg1-14 libsasl2-modules-db_2.1.26.dfsg1-14 libseccomp2_2.2.3-2ubuntu3 libselinux1_2.4-3build1 libsemanage-common_2.4-3build1 libsemanage1_2.4-3build1 libsepol1_2.4-2 libsigsegv2_2.10-4 libslang2_2.3.0-2ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.27.1-1ubuntu3 libsqlite3-0_3.10.2-1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2e-1ubuntu1 libstdc++-5-dev_5.3.1-7ubuntu1 libstdc++6_5.3.1-7ubuntu1 libsynctex1_2015.20150524.37493-7build4 libsystemd0_228-4ubuntu1 libtasn1-6_4.7-3 libtexlua52_2015.20150524.37493-7build4 libtexluajit2_2015.20150524.37493-7build4 libtiff5_4.0.6-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20151024-2ubuntu1 libtool_2.4.2-1.11 libubsan0_5.3.1-7ubuntu1 libudev1_228-4ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-1ubuntu3 libwind0-heimdal_1.6~rc2+dfsg-10ubuntu1 libx11-6_2:1.6.3-1ubuntu2 libx11-data_2:1.6.3-1ubuntu2 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1 libxcb1_1.11.1-1ubuntu1 libxdmcp6_1:1.1.2-1.1 libxext6_2:1.3.3-1 libxi6_2:1.7.6-1 libxml2_2.9.3+dfsg1-1 libxmu6_2:1.1.2-2 libxpm4_1:3.5.11-1 libxslt1.1_1.1.28-2.1 libxt6_1:1.1.5-0ubuntu1 libzzip-0-13_0.13.62-3 linux-libc-dev_4.4.0-1.15 lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu7 lsb-base_9.20160110 m4_1.4.17-5 make_4.1-5 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mime-support_3.59ubuntu1 mount_2.27.1-1ubuntu3 mpi-default-bin_1.0.2+nmu2 mpi-default-dev_1.0.2+nmu2 multiarch-support_2.21-0ubuntu5 ncurses-base_6.0+20151024-2ubuntu1 ncurses-bin_6.0+20151024-2ubuntu1 openmpi-bin_1.6.5-11 openmpi-common_1.6.5-11 openssl_1.0.2e-1ubuntu1 optipng_0.7.5-1 passwd_1:4.1.5.1-1.1ubuntu7 patch_2.7.5-1 perl_5.22.1-4 perl-base_5.22.1-4 perl-modules-5.22_5.22.1-4 pkg-create-dbgsym_0.70 pkgbinarymangler_129 po-debconf_1.0.19 policyrcd-script-zg2_0.1-2 poppler-data_0.4.7-7 preview-latex-style_11.88-1.1ubuntu1 procps_2:3.3.10-4ubuntu2 python_2.7.11-1 python-apt_1.1.0~beta1build1 python-apt-common_1.1.0~beta1build1 python-dev_2.7.11-1 python-minimal_2.7.11-1 python2.7_2.7.11-3 python2.7-dev_2.7.11-3 python2.7-minimal_2.7.11-3 readline-common_6.3-8ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mira-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 sgml-base_1.26+nmu4ubuntu1 sgml-data_2.0.10 systemd_228-4ubuntu1 systemd-sysv_228-4ubuntu1 sysv-rc_2.88dsf-59.3ubuntu1 sysvinit-utils_2.88dsf-59.3ubuntu1 t1utils_1.39-2 tar_1.28-2.1 tex-common_6.04 texlive_2015.20160117-1 texlive-base_2015.20160117-1 texlive-bibtex-extra_2015.20160117-1 texlive-binaries_2015.20150524.37493-7build4 texlive-extra-utils_2015.20160117-1 texlive-fonts-recommended_2015.20160117-1 texlive-latex-base_2015.20160117-1 texlive-latex-extra_2015.20160117-1 texlive-latex-recommended_2015.20160117-1 texlive-math-extra_2015.20160117-1 texlive-pictures_2015.20160117-1 tzdata_2015g-1 ubuntu-keyring_2012.05.19 ucf_3.0033 udev_228-4ubuntu1 util-linux_2.27.1-1ubuntu3 vim-common_2:7.4.826-1ubuntu3 x11-common_1:7.7+12ubuntu1 xdg-utils_1.1.0~rc3+git20150907-1ubuntu3 xml-core_0.13+nmu2 xsltproc_1.1.28-2.1 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu4 zlib1g-dev_1:1.2.8.dfsg-2ubuntu4 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Wed Jan 27 13:10:08 2016 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./mira_4.9.5-3.dsc dpkg-source: info: extracting mira in mira-4.9.5 dpkg-source: info: unpacking mira_4.9.5.orig.tar.bz2 dpkg-source: info: unpacking mira_4.9.5-3.debian.tar.xz dpkg-source: info: applying fix_strange_link_issue.patch dpkg-source: info: applying spelling.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=8 HOME=/home/buildd LANG=C LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package mira dpkg-buildpackage: source version 4.9.5-3 dpkg-buildpackage: source distribution unstable dpkg-source --before-build mira-4.9.5 dpkg-buildpackage: host architecture powerpc fakeroot debian/rules clean dh clean --with autoreconf dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/«PKGBUILDDIR»' ( cd doc ; make clean ) || true make[2]: Entering directory '/«PKGBUILDDIR»/doc' cd .. && make am--refresh make[3]: Entering directory '/«PKGBUILDDIR»' make[3]: *** No rule to make target 'am--refresh'. Stop. make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: *** [../config.status] Error 2 Makefile:261: recipe for target '../config.status' failed make[2]: Leaving directory '/«PKGBUILDDIR»/doc' dh_auto_clean find * -name Makefile -exec rm '{}' ';' find * -name '*.xxd.H' -exec rm '{}' ';' find * -name '*.par.H' -exec rm '{}' ';' find * -name 'compileinfo.*' -exec rm '{}' ';' make[1]: Leaving directory '/«PKGBUILDDIR»' dh_autoreconf_clean debian/rules override_dh_clean make[1]: Entering directory '/«PKGBUILDDIR»' dh_clean rm -f debian/debhelper-build-stamp rm -f debian/mira-assembler.substvars rm -f debian/mira-assembler.*.debhelper rm -rf debian/mira-assembler/ rm -f debian/mira-examples.substvars rm -f debian/mira-examples.*.debhelper rm -rf debian/mira-examples/ rm -f debian/mira-doc.substvars rm -f debian/mira-doc.*.debhelper rm -rf debian/mira-doc/ rm -rf debian/.debhelper/ rm -f debian/*.debhelper.log rm -f debian/files rm -f -- src/io/so.obo.xxd find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f *-stamp rm -rf lib make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules build-arch dh build-arch --with autoreconf dh_testdir -a dh_update_autotools_config -a install -d debian/.debhelper/bucket/files cp -an --reflink=auto config.guess debian/.debhelper/bucket/files/9be3de218833c076786b919dc34aab691611f4cd73316e7705f2673e2c41921b.tmp mv -f debian/.debhelper/bucket/files/9be3de218833c076786b919dc34aab691611f4cd73316e7705f2673e2c41921b.tmp debian/.debhelper/bucket/files/9be3de218833c076786b919dc34aab691611f4cd73316e7705f2673e2c41921b cp -f /usr/share/misc/config.guess ./config.guess cp -an --reflink=auto config.sub debian/.debhelper/bucket/files/e308ae7f7f524bd790f8d4457c7c0a30f8403ffff4dd0b7d4388daca24275db4.tmp mv -f debian/.debhelper/bucket/files/e308ae7f7f524bd790f8d4457c7c0a30f8403ffff4dd0b7d4388daca24275db4.tmp debian/.debhelper/bucket/files/e308ae7f7f524bd790f8d4457c7c0a30f8403ffff4dd0b7d4388daca24275db4 cp -f /usr/share/misc/config.sub ./config.sub dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} \; > debian/autoreconf.before autoreconf -f -i libtoolize: putting auxiliary files in `.'. libtoolize: copying file `./ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'. libtoolize: copying file `m4/libtool.m4' libtoolize: copying file `m4/ltoptions.m4' libtoolize: copying file `m4/ltsugar.m4' libtoolize: copying file `m4/ltversion.m4' libtoolize: copying file `m4/lt~obsolete.m4' Unescaped left brace in regex is deprecated, passed through in regex; marked by <-- HERE in m/\${ <-- HERE ([^ \t=:+{}]+)}/ at /usr/bin/automake line 3936. configure.ac:102: installing './compile' doc/docbook/Makefile.am:22: warning: '%'-style pattern rules are a GNU make extension src/io/Makefile.am:12: warning: '%'-style pattern rules are a GNU make extension src/mira/Makefile.am:10: warning: '%'-style pattern rules are a GNU make extension find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} \; > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/«PKGBUILDDIR»' mkdir lib ln -s /usr/lib/libtcmalloc_minimal.so.4 lib/libtcmalloc_minimal.so #dh_auto_configure dh_auto_configure -- --with-boost-libdir=/usr/lib/powerpc-linux-gnu ./configure --build=powerpc-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/powerpc-linux-gnu --libexecdir=\${prefix}/lib/powerpc-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --with-boost-libdir=/usr/lib/powerpc-linux-gnu configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '2001' is supported by ustar format... yes checking whether GID '2501' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking for a sed that does not truncate output... /bin/sed checking whether to add --prefix as include path... yes +++++++++++++++++++++++++++++++++++++ systemuname: Linux CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include CXXFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none +++++++++++++++++++++++++++++++++++++ systemuname: Linux CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include CXXFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for int64_t... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking whether long has 64bit... no checking whether enabling 64bit compilation support... no checking build system type... powerpc-unknown-linux-gnu checking for compiler optimisation settings... -O3 -funroll-loops +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking host system type... powerpc-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert powerpc-unknown-linux-gnu file names to powerpc-unknown-linux-gnu format... func_convert_file_noop checking how to convert powerpc-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether make sets $(MAKE)... (cached) yes checking whether ln -s works... yes checking for flex... yes checking for flex... flex checking lex output file root... lex.yy checking lex library... -lfl checking whether yytext is a pointer... yes checking for flex++... yes checking for xxd... yes checking for ANSI C header files... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for C/C++ restrict keyword... __restrict checking whether struct tm is in sys/time.h or time.h... time.h checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking whether lstat correctly handles trailing slash... yes checking whether stat accepts an empty string... no checking for strftime... yes checking for floor... no checking for memset... yes checking for pow... no checking for sqrt... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for _LARGEFILE_SOURCE value needed for large files... no checking for isblank... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking for boostlib >= 1.48.0... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -I/usr/include BOOST LDFLAGS: -L/usr/lib/powerpc-linux-gnu ac_boost_path: ac_boost_lib_path: /usr/lib/powerpc-linux-gnu CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -I/usr/include BOOST LDFLAGS: -L/usr/lib/powerpc-linux-gnu CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/powerpc-linux-gnu CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking whether the Boost::Thread library is available... yes checking for exit in -lboost_thread... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/powerpc-linux-gnu ac_boost_path: ac_boost_lib_path: /usr/lib/powerpc-linux-gnu BOOST_THREAD_LIB: -lboost_thread CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/powerpc-linux-gnu CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/powerpc-linux-gnu ac_boost_path: ac_boost_lib_path: /usr/lib/powerpc-linux-gnu BOOST_THREAD_LIB: -lboost_thread CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/powerpc-linux-gnu CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/powerpc-linux-gnu LIBS now: -lboost_thread +++++++++++++++++++++++++++++++++++++ checking whether the Boost::Regex library is available... yes checking for exit in -lboost_regex... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/powerpc-linux-gnu ac_boost_path: ac_boost_lib_path: /usr/lib/powerpc-linux-gnu BOOST_REGEX_LIB: -lboost_regex CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/powerpc-linux-gnu CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex +++++++++++++++++++++++++++++++++++++ checking whether the Boost::System library is available... yes checking for exit in -lboost_system... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/powerpc-linux-gnu ac_boost_path: ac_boost_lib_path: /usr/lib/powerpc-linux-gnu BOOST_SYSTEM_LIB: -lboost_system CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/powerpc-linux-gnu CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex -lboost_system +++++++++++++++++++++++++++++++++++++ checking whether the Boost::Filesystem library is available... yes checking for exit in -lboost_filesystem... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/powerpc-linux-gnu ac_boost_path: ac_boost_lib_path: /usr/lib/powerpc-linux-gnu BOOST_FILESYSTEM_LIB: -lboost_filesystem CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/powerpc-linux-gnu CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem +++++++++++++++++++++++++++++++++++++ checking whether the Boost::IOStreams library is available... yes checking for exit in -lboost_iostreams... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/powerpc-linux-gnu ac_boost_path: ac_boost_lib_path: /usr/lib/powerpc-linux-gnu BOOST_IOSTREAMS_LIB: -lboost_iostreams CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/powerpc-linux-gnu CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams +++++++++++++++++++++++++++++++++++++ checking for clock_gettime in -lrt... yes +++++++++++++++++++++++++++++++++++++ Need to specifically use rt library LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt +++++++++++++++++++++++++++++++++++++ checking for Expat XML Parser headers in /usr/include... found checking for Expat XML Parser libraries... found checking for Expat XML Parser... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -I/usr/include CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/powerpc-linux-gnu -L/usr/lib LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat +++++++++++++++++++++++++++++++++++++ checking if zlib is wanted... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -I/usr/include CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/powerpc-linux-gnu -L/usr/lib LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz +++++++++++++++++++++++++++++++++++++ checking for gzoffset in -lz... yes checking for BZ2_bzRead in -lbz2... yes checking for flex version compatible with MIRA... yes checking for profiling settings... no checking for purify... no checking whether mira should compile in public quiet mode... yes checking whether mira should compile with bound tracking... yes checking whether mira should compile with bug tracking... yes checking whether mira should compile with extended bug tracking... no checking whether mira should compile with function trace... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/stdinc/Makefile config.status: creating src/debuggersupport/Makefile config.status: creating src/memorc/Makefile config.status: creating src/errorhandling/Makefile config.status: creating src/util/Makefile config.status: creating src/io/Makefile config.status: creating src/mira/Makefile config.status: creating src/caf/Makefile config.status: creating src/support/Makefile config.status: creating src/scripts/Makefile config.status: creating src/modules/Makefile config.status: creating src/progs/Makefile config.status: creating doc/Makefile config.status: creating doc/docbook/Makefile config.status: creating distribution/Makefile config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode -------------------------------------------------------------------------------- Summary of MIRA configuration -------------------------------------------------------------------------------- Building version ................................. 4.9.5_2_linux-gnu_powerpc_32_dynamic We are building on ............................... Linux CPU supports 64 bit? ............................. no Compiler family .................................. gcc Compiler optimisation flags used ................. -O3 -funroll-loops Building completely static? ...................... no BOOST expected to compile and link? .............. yes Linking with TCmalloc library? ................... no Have complete zlib support? ...................... yes Can MIRA be built on this system? ................ yes Using CFLAGS : -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -I/usr/include -Werror=uninitialized -Werror=return-type Using CXXFLAGS : -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 Using LDFLAGS : -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/powerpc-linux-gnu -L/usr/lib Using LIBS : -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 Looks good, we do not expect compilation problems. -------------------------------------------------------------------------------- Type 'make' to make the binaries and then 'make install' to install them. make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_auto_build make[1]: Entering directory '/«PKGBUILDDIR»' # some *.cc files are created by old flex version which breaks the build # see bug #812681 find -name '*.ll' | sed -e 's/[.]ll$/.cc/' | xargs rm dh_auto_build --parallel make -j8 make[2]: Entering directory '/«PKGBUILDDIR»' make all-recursive make[3]: Entering directory '/«PKGBUILDDIR»' Making all in src make[4]: Entering directory '/«PKGBUILDDIR»/src' make all-recursive make[5]: Entering directory '/«PKGBUILDDIR»/src' Making all in debuggersupport make[6]: Entering directory '/«PKGBUILDDIR»/src/debuggersupport' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o dbgsupport.o dbgsupport.C rm -f libmiradebuggersupport.a ar cru libmiradebuggersupport.a dbgsupport.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiradebuggersupport.a make[6]: Leaving directory '/«PKGBUILDDIR»/src/debuggersupport' Making all in io make[6]: Entering directory '/«PKGBUILDDIR»/src/io' Making .H out of .xxd mira_ft_set.xxd.H Making .H out of .xxd gap4_ft_so_map.xxd.H Reducing so.obo for smaller so.obo.xxd Making .H out of .xxd oldso2so.xxd.H Making .H out of .xxd so2xgap4map.xxd.H Making .H out of .xxd so.obo.xxd.H make all-am make[7]: Entering directory '/«PKGBUILDDIR»/src/io' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o annotationmappings.o annotationmappings.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o exp.o exp.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o generalio.o generalio.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o fasta.o fasta.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o fastq-mira.o fastq-mira.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o phd.o phd.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o scf.o scf.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o ncbiinfoxml.o ncbiinfoxml.C /bin/bash ../../ylwrap exp_flexer.ll lex.yy.c exp_flexer.cc -- flex g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o exp_flexer.o exp_flexer.cc rm -f libmirafio.a ar cru libmirafio.a annotationmappings.o exp.o generalio.o fasta.o fastq-mira.o phd.o scf.o ncbiinfoxml.o exp_flexer.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmirafio.a make[7]: Leaving directory '/«PKGBUILDDIR»/src/io' make[6]: Leaving directory '/«PKGBUILDDIR»/src/io' Making all in stdinc make[6]: Entering directory '/«PKGBUILDDIR»/src/stdinc' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/stdinc' Making all in errorhandling make[6]: Entering directory '/«PKGBUILDDIR»/src/errorhandling' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o errorhandling.o errorhandling.C rm -f libmiraerrorhandling.a ar cru libmiraerrorhandling.a errorhandling.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiraerrorhandling.a make[6]: Leaving directory '/«PKGBUILDDIR»/src/errorhandling' Making all in util make[6]: Entering directory '/«PKGBUILDDIR»/src/util' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o machineinfo.o machineinfo.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o fileanddisk.o fileanddisk.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o misc.o misc.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o dptools.o dptools.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o fmttext.o fmttext.C rm -f libmirafmttext.a ar cru libmirafmttext.a fmttext.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmirafmttext.a fileanddisk.C:838:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush(); } ^ fileanddisk.C:50:0: note: this is the location of the previous definition #define CEBUG(bla) ^ fileanddisk.C:943:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ fileanddisk.C:838:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush(); } ^ rm -f libmiradptools.a ar cru libmiradptools.a dptools.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiradptools.a fileanddisk.C: In function 'int64 myGZRead(gzFile_s*&, void*, uint64)': fileanddisk.C:171:28: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] strerror_r(errno,buf,1024); ^ rm -f libmirautil.a ar cru libmirautil.a machineinfo.o fileanddisk.o misc.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmirautil.a make[6]: Leaving directory '/«PKGBUILDDIR»/src/util' Making all in mira make[6]: Entering directory '/«PKGBUILDDIR»/src/mira' Making .H out of .xxd adaptorsforclip.454.xxd.H Making .H out of .xxd adaptorsforclip.iontor.xxd.H Making .H out of .xxd adaptorsforclip.solexa.xxd.H Making .H out of .xxd adaptorsregex.solexa.xxd.H Making .H out of .xxd seqforfilter_phix174.solexa.xxd.H Making .H out of .xxd adaptorsregex.iontor.xxd.H make all-am make[7]: Entering directory '/«PKGBUILDDIR»/src/mira' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o estassembly.o estassembly.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o hashstats_sdbg.o hashstats_sdbg.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o hashstats.o hashstats.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o skim.o skim.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly.o assembly.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o contig.o contig.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o read.o read.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o contig_analysis.o contig_analysis.C hashstats.C:922:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} ^ hashstats.C:78:0: note: this is the location of the previous definition #define CEBUG(bla) ^ hashstats.C:1031:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ hashstats.C:922:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} ^ read.C: In member function 'void Read::dumpAsReadname(std::ostream&)': read.C:1262:33: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function 'void Read::dumpAsFASTA(std::ostream&, bool, bool, bool)': read.C:1293:33: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function 'void Read::dumpAsFASTQ(std::ostream&, bool, bool, bool)': read.C:1377:33: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function 'void Read::dumpAsFASTAQual(std::ostream&, bool, bool, bool)': read.C:1478:33: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function 'void Read::dumpAsCAF(std::ostream&)': read.C:1550:33: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function 'void Read::dumpAsMAF(std::ostream&)': read.C:1968:33: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] sprintf(buffer, "%x", this) ; ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o ads.o ads.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o adsfacts.o adsfacts.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o align.o align.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_info.o assembly_info.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_buildcontigs.o assembly_buildcontigs.C assembly_buildcontigs.C:75:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush(); } ^ assembly_buildcontigs.C:50:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_buildcontigs.C:1238:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_buildcontigs.C:75:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush(); } ^ assembly_buildcontigs.C:1282:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush(); } ^ assembly_buildcontigs.C:1238:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_buildcontigs.C:1436:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_buildcontigs.C:1282:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush(); } ^ assembly_buildcontigs.C:1447:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush(); } ^ assembly_buildcontigs.C:1436:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_buildcontigs.C:1572:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_buildcontigs.C:1447:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush(); } ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_io.o assembly_io.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_misc.o assembly_misc.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_output.o assembly_output.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_pbcorrect.o assembly_pbcorrect.C assembly_misc.C:1882:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_misc.C:52:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_misc.C:1916:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_misc.C:1882:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_reduceskimhits.o assembly_reduceskimhits.C assembly_pbcorrect.C:58:0: warning: "CEBUG" redefined #define CEBUG(bla) { if(docebug) {cout << bla; cout.flush();}} ^ assembly_pbcorrect.C:44:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_reduceskimhits.C:1117:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_reduceskimhits.C:882:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_reduceskimhits.C:1157:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_reduceskimhits.C:1117:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_reduceskimhits.C:2784:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_reduceskimhits.C:1157:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_reduceskimhits.C:2803:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_reduceskimhits.C:2784:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_reduceskimhits.C:2807:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_reduceskimhits.C:2803:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_reduceskimhits.C:2847:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_reduceskimhits.C:2807:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_reduceskimhits.C:2852:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_reduceskimhits.C:2847:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_reduceskimhits.C:2932:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_reduceskimhits.C:2852:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_swalign.o assembly_swalign.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o contig_consensus.o contig_consensus.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o contig_covanalysis.o contig_covanalysis.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o contig_edit.o contig_edit.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o contig_featureinfo.o contig_featureinfo.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o contig_output.o contig_output.C contig_featureinfo.C:524:0: warning: "CEBUGF2" redefined #define CEBUGF2 ^ contig_featureinfo.C:485:0: note: this is the location of the previous definition #define CEBUGF2(bla) ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o contig_pairconsistency.o contig_pairconsistency.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o dataprocessing.o dataprocessing.C contig_pairconsistency.C:312:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ contig_pairconsistency.C:33:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} ^ contig_pairconsistency.C:314:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} ^ contig_pairconsistency.C:312:0: note: this is the location of the previous definition #define CEBUG(bla) ^ contig_pairconsistency.C:398:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ contig_pairconsistency.C:314:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o dynamic.o dynamic.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o gbf_parse.o gbf_parse.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o gff_parse.o gff_parse.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o gff_save.o gff_save.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o maf_parse.o maf_parse.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o manifest.o manifest.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o multitag.o multitag.C /bin/bash ../../ylwrap parameters_flexer.ll lex.yy.c parameters_flexer.cc -- flex g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o parameters.o parameters.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 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-DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o ppathfinder.o ppathfinder.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o preventinitfiasco.o preventinitfiasco.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o readgrouplib.o readgrouplib.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 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-DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o readpool.o readpool.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o readpool_io.o readpool_io.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o sam_collect.o sam_collect.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o scaffolder.o scaffolder.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o seqtohash.o seqtohash.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o simplebloomfilter.o simplebloomfilter.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o skim_lowbph.o skim_lowbph.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o warnings.o warnings.C scaffolder.C:201:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ scaffolder.C:82:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush(); } ^ rm -f libmiraestass.a g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o parameters_flexer.o parameters_flexer.cc ar cru libmiraestass.a estassembly.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiraestass.a rm -f libmira.a ar cru libmira.a hashstats_sdbg.o hashstats.o skim.o assembly.o contig.o read.o contig_analysis.o ads.o adsfacts.o align.o assembly_info.o assembly_buildcontigs.o assembly_io.o assembly_misc.o assembly_output.o assembly_pbcorrect.o assembly_reduceskimhits.o assembly_swalign.o contig_consensus.o contig_covanalysis.o contig_edit.o contig_featureinfo.o contig_output.o contig_pairconsistency.o dataprocessing.o dynamic.o gbf_parse.o gff_parse.o gff_save.o maf_parse.o manifest.o multitag.o parameters_flexer.o parameters.o pcrcontainer.o ppathfinder.o preventinitfiasco.o readgrouplib.o readlotstat.o readpool.o readpool_io.o sam_collect.o scaffolder.o seqtohash.o simplebloomfilter.o skim_lowbph.o warnings.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmira.a make[7]: Leaving directory '/«PKGBUILDDIR»/src/mira' make[6]: Leaving directory '/«PKGBUILDDIR»/src/mira' Making all in caf make[6]: Entering directory '/«PKGBUILDDIR»/src/caf' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o caf.o caf.C /bin/bash ../../ylwrap caf_flexer.ll lex.yy.c caf_flexer.cc -- flex g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o caf_flexer.o caf_flexer.cc rm -f libmiracaf.a ar cru libmiracaf.a caf.o caf_flexer.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiracaf.a make[6]: Leaving directory '/«PKGBUILDDIR»/src/caf' Making all in memorc make[6]: Entering directory '/«PKGBUILDDIR»/src/memorc' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o memorc.o memorc.C memorc.C: In static member function 'static void MemORC::statistics()': memorc.C:154:65: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'std::map::size_type {aka unsigned int}' [-Wformat=] printf("Num. memory blocks : %llu\n", MOC_memblocks.size()); ^ memorc.C:155:65: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'std::map::size_type {aka unsigned int}' [-Wformat=] printf("Num. active hot blocks : %llu\n", MOC_hotblocks.size()); ^ memorc.C:156:72: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'std::vector::size_type {aka unsigned int}' [-Wformat=] printf("Num. pending hot blocks: %llu\n", MOC_hotaidsrequested.size()); ^ memorc.C:157:60: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'size_t {aka unsigned int}' [-Wformat=] printf("Total mem reqested : %llu\n", MOC_reqmemalloc); ^ memorc.C:158:90: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'size_t {aka unsigned int}' [-Wformat=] printf("Total mem allocated : %llu (including pads and fences)\n", MOC_totalmemalloc); ^ memorc.C: In static member function 'static void* MemORC::newMemBlock(size_t)': memorc.C:224:116: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'size_t {aka unsigned int}' [-Wformat=] printf("Used malloc()\nTried to allocate %llu byte.\nSorry, memory allocation failed. Bailing out.\n", totaln); ^ memorc.C: In static member function 'static void MemORC::deleteMemBlock(void*)': memorc.C:310:112: warning: format '%d' expects argument of type 'int', but argument 2 has type 'uint64 {aka long long unsigned int}' [-Wformat=] printf("Nearest memblock above (%d):\t",reinterpret_cast(mbI->first)-reinterpret_cast(usraddr)); ^ memorc.C:317:113: warning: format '%d' expects argument of type 'int', but argument 2 has type 'uint64 {aka long long unsigned int}' [-Wformat=] printf("Nearest memblock below (-%d):\t",reinterpret_cast(usraddr)-reinterpret_cast(mbI->first)); ^ memorc.C: In static member function 'static bool MemORC::checkMemBlock(std::map::iterator)': memorc.C:499:44: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'size_t {aka unsigned int}' [-Wformat=] printf("Size: %llu\n", mbI->second.size); ^ memorc.C: In static member function 'static void MemORC::printMemBlockInfo(std::map::iterator)': memorc.C:557:50: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 3 has type 'size_t {aka unsigned int}' [-Wformat=] printf("%p\t%llu\t",mbI->first,mbI->second.size); ^ rm -f libmemorc.a g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o main.o main.C ar cru libmemorc.a memorc.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmemorc.a /bin/bash ../../libtool --tag=CXX --mode=link g++ -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf/ -L/usr/lib/powerpc-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/powerpc-linux-gnu -L/usr/lib -o main main.o -lmiraerrorhandling -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o main main.o -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf/ -L/usr/lib/powerpc-linux-gnu -L/usr/lib -lmiraerrorhandling -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/powerpc-linux-gnu/libexpat.so -lm -lz -lbz2 -pthread make[6]: Leaving directory '/«PKGBUILDDIR»/src/memorc' Making all in modules make[6]: Entering directory '/«PKGBUILDDIR»/src/modules' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o mod_sigconex.o mod_sigconex.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o mod_scaffold.o mod_scaffold.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o mod_bait.o mod_bait.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o mod_dbgreplay.o mod_dbgreplay.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o mod_diff.o mod_diff.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o mod_mer.o mod_mer.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o mod_mira.o mod_mira.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o mod_convert.o mod_convert.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o mod_memestim.o mod_memestim.C mod_mira.C: In function 'void miraMain_launchWrapped(int, char**)': mod_mira.C:424:21: warning: ignoring return value of 'int chdir(const char*)', declared with attribute warn_unused_result [-Wunused-result] chdir("../.."); ^ mod_mira.C:449:21: warning: ignoring return value of 'int chdir(const char*)', declared with attribute warn_unused_result [-Wunused-result] chdir("../.."); ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o mod_tagsnp.o mod_tagsnp.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o misc.o misc.C rm -f libmiramodules.a ar cru libmiramodules.a mod_sigconex.o mod_scaffold.o mod_bait.o mod_dbgreplay.o mod_diff.o mod_mer.o mod_mira.o mod_convert.o mod_memestim.o mod_tagsnp.o misc.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiramodules.a make[6]: Leaving directory '/«PKGBUILDDIR»/src/modules' Making all in progs make[6]: Entering directory '/«PKGBUILDDIR»/src/progs' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o quirks.o quirks.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o miratest.o miratest.C Making .H out of .xxd compileinfo.itxt g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o mira.o mira.C /bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/powerpc-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/powerpc-linux-gnu -L/usr/lib -o mira mira.o quirks.o -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o mira mira.o quirks.o -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/powerpc-linux-gnu -L/usr/lib -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/powerpc-linux-gnu/libexpat.so -lm -lz -lbz2 -pthread /bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/powerpc-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/powerpc-linux-gnu -L/usr/lib -o miratest miratest.o -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o miratest miratest.o -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/powerpc-linux-gnu -L/usr/lib -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/powerpc-linux-gnu/libexpat.so -lm -lz -lbz2 -pthread make[6]: Leaving directory '/«PKGBUILDDIR»/src/progs' Making all in support make[6]: Entering directory '/«PKGBUILDDIR»/src/support' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/support' Making all in scripts make[6]: Entering directory '/«PKGBUILDDIR»/src/scripts' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/scripts' make[6]: Entering directory '/«PKGBUILDDIR»/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src' make[4]: Leaving directory '/«PKGBUILDDIR»/src' make[4]: Entering directory '/«PKGBUILDDIR»' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/«PKGBUILDDIR»' make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_auto_test make[1]: Entering directory '/«PKGBUILDDIR»' make check make[2]: Entering directory '/«PKGBUILDDIR»' make check-recursive make[3]: Entering directory '/«PKGBUILDDIR»' Making check in src make[4]: Entering directory '/«PKGBUILDDIR»/src' make check-recursive make[5]: Entering directory '/«PKGBUILDDIR»/src' Making check in debuggersupport make[6]: Entering directory '/«PKGBUILDDIR»/src/debuggersupport' make[6]: Nothing to be done for 'check'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/debuggersupport' Making check in io make[6]: Entering directory '/«PKGBUILDDIR»/src/io' make check-am make[7]: Entering directory '/«PKGBUILDDIR»/src/io' make[7]: Nothing to be done for 'check-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/io' make[6]: Leaving directory '/«PKGBUILDDIR»/src/io' Making check in stdinc make[6]: Entering directory '/«PKGBUILDDIR»/src/stdinc' make[6]: Nothing to be done for 'check'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/stdinc' Making check in errorhandling make[6]: Entering directory '/«PKGBUILDDIR»/src/errorhandling' make[6]: Nothing to be done for 'check'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/errorhandling' Making check in util make[6]: Entering directory '/«PKGBUILDDIR»/src/util' make[6]: Nothing to be done for 'check'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/util' Making check in mira make[6]: Entering directory '/«PKGBUILDDIR»/src/mira' make check-am make[7]: Entering directory '/«PKGBUILDDIR»/src/mira' make[7]: Nothing to be done for 'check-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/mira' make[6]: Leaving directory '/«PKGBUILDDIR»/src/mira' Making check in caf make[6]: Entering directory '/«PKGBUILDDIR»/src/caf' make[6]: Nothing to be done for 'check'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/caf' Making check in memorc make[6]: Entering directory '/«PKGBUILDDIR»/src/memorc' make[6]: Nothing to be done for 'check'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/memorc' Making check in modules make[6]: Entering directory '/«PKGBUILDDIR»/src/modules' make[6]: Nothing to be done for 'check'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/modules' Making check in progs make[6]: Entering directory '/«PKGBUILDDIR»/src/progs' Making .H out of .xxd compileinfo.itxt make[6]: Leaving directory '/«PKGBUILDDIR»/src/progs' Making check in support make[6]: Entering directory '/«PKGBUILDDIR»/src/support' make[6]: Nothing to be done for 'check'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/support' Making check in scripts make[6]: Entering directory '/«PKGBUILDDIR»/src/scripts' make[6]: Nothing to be done for 'check'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/scripts' make[6]: Entering directory '/«PKGBUILDDIR»/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src' make[4]: Leaving directory '/«PKGBUILDDIR»/src' make[4]: Entering directory '/«PKGBUILDDIR»' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/«PKGBUILDDIR»' make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' fakeroot debian/rules binary-arch dh binary-arch --with autoreconf dh_testroot -a dh_prep -a rm -f debian/mira-assembler.substvars rm -f debian/mira-assembler.*.debhelper rm -rf debian/mira-assembler/ dh_installdirs -a install -d debian/mira-assembler install -d debian/mira-assembler/usr/bin debian/rules override_dh_auto_install make[1]: Entering directory '/«PKGBUILDDIR»' make install DESTDIR=/«PKGBUILDDIR»/debian/mira-assembler make[2]: Entering directory '/«PKGBUILDDIR»' make install-recursive make[3]: Entering directory '/«PKGBUILDDIR»' Making install in src make[4]: Entering directory '/«PKGBUILDDIR»/src' make install-recursive make[5]: Entering directory '/«PKGBUILDDIR»/src' Making install in debuggersupport make[6]: Entering directory '/«PKGBUILDDIR»/src/debuggersupport' make[7]: Entering directory '/«PKGBUILDDIR»/src/debuggersupport' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/debuggersupport' make[6]: Leaving directory '/«PKGBUILDDIR»/src/debuggersupport' Making install in io make[6]: Entering directory '/«PKGBUILDDIR»/src/io' make install-am make[7]: Entering directory '/«PKGBUILDDIR»/src/io' make[8]: Entering directory '/«PKGBUILDDIR»/src/io' make[8]: Nothing to be done for 'install-exec-am'. make[8]: Nothing to be done for 'install-data-am'. make[8]: Leaving directory '/«PKGBUILDDIR»/src/io' make[7]: Leaving directory '/«PKGBUILDDIR»/src/io' make[6]: Leaving directory '/«PKGBUILDDIR»/src/io' Making install in stdinc make[6]: Entering directory '/«PKGBUILDDIR»/src/stdinc' make[7]: Entering directory '/«PKGBUILDDIR»/src/stdinc' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/stdinc' make[6]: Leaving directory '/«PKGBUILDDIR»/src/stdinc' Making install in errorhandling make[6]: Entering directory '/«PKGBUILDDIR»/src/errorhandling' make[7]: Entering directory '/«PKGBUILDDIR»/src/errorhandling' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/errorhandling' make[6]: Leaving directory '/«PKGBUILDDIR»/src/errorhandling' Making install in util make[6]: Entering directory '/«PKGBUILDDIR»/src/util' make[7]: Entering directory '/«PKGBUILDDIR»/src/util' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/util' make[6]: Leaving directory '/«PKGBUILDDIR»/src/util' Making install in mira make[6]: Entering directory '/«PKGBUILDDIR»/src/mira' make install-am make[7]: Entering directory '/«PKGBUILDDIR»/src/mira' make[8]: Entering directory '/«PKGBUILDDIR»/src/mira' make[8]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/«PKGBUILDDIR»/debian/mira-assembler/usr/share/mira' /usr/bin/install -c -m 644 demoparam.prm '/«PKGBUILDDIR»/debian/mira-assembler/usr/share/mira' make[8]: Leaving directory '/«PKGBUILDDIR»/src/mira' make[7]: Leaving directory '/«PKGBUILDDIR»/src/mira' make[6]: Leaving directory '/«PKGBUILDDIR»/src/mira' Making install in caf make[6]: Entering directory '/«PKGBUILDDIR»/src/caf' make[7]: Entering directory '/«PKGBUILDDIR»/src/caf' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/caf' make[6]: Leaving directory '/«PKGBUILDDIR»/src/caf' Making install in memorc make[6]: Entering directory '/«PKGBUILDDIR»/src/memorc' make[7]: Entering directory '/«PKGBUILDDIR»/src/memorc' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/memorc' make[6]: Leaving directory '/«PKGBUILDDIR»/src/memorc' Making install in modules make[6]: Entering directory '/«PKGBUILDDIR»/src/modules' make[7]: Entering directory '/«PKGBUILDDIR»/src/modules' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/modules' make[6]: Leaving directory '/«PKGBUILDDIR»/src/modules' Making install in progs make[6]: Entering directory '/«PKGBUILDDIR»/src/progs' Making .H out of .xxd compileinfo.itxt make[7]: Entering directory '/«PKGBUILDDIR»/src/progs' Making .H out of .xxd compileinfo.itxt /bin/mkdir -p '/«PKGBUILDDIR»/debian/mira-assembler/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c mira '/«PKGBUILDDIR»/debian/mira-assembler/usr/bin' libtool: install: /usr/bin/install -c mira /«PKGBUILDDIR»/debian/mira-assembler/usr/bin/mira make install-exec-hook make[8]: Entering directory '/«PKGBUILDDIR»/src/progs' cd /«PKGBUILDDIR»/debian/mira-assembler/usr/bin && \ rm -f miramem && \ ln -s mira miramem && \ rm -f mirabait && \ ln -s mira mirabait &&\ rm -f miraconvert && \ ln -s mira miraconvert && \ rm -f miramer && \ ln -s mira miramer make[8]: Leaving directory '/«PKGBUILDDIR»/src/progs' make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/progs' make[6]: Leaving directory '/«PKGBUILDDIR»/src/progs' Making install in support make[6]: Entering directory '/«PKGBUILDDIR»/src/support' make[7]: Entering directory '/«PKGBUILDDIR»/src/support' make[7]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/«PKGBUILDDIR»/debian/mira-assembler/usr/share/mira/support_3rdparty_tools' /usr/bin/install -c -m 644 consedrc.13.0 consedtaglib.txt GTAGDB README '/«PKGBUILDDIR»/debian/mira-assembler/usr/share/mira/support_3rdparty_tools' make[7]: Leaving directory '/«PKGBUILDDIR»/src/support' make[6]: Leaving directory '/«PKGBUILDDIR»/src/support' Making install in scripts make[6]: Entering directory '/«PKGBUILDDIR»/src/scripts' make[7]: Entering directory '/«PKGBUILDDIR»/src/scripts' make install-exec-hook make[8]: Entering directory '/«PKGBUILDDIR»/src/scripts' rm -f /«PKGBUILDDIR»/debian/mira-assembler/usr/bin/fixACE4consed.tcl && \ cp fixACE4consed.tcl /«PKGBUILDDIR»/debian/mira-assembler/usr/bin rm -f /«PKGBUILDDIR»/debian/mira-assembler/usr/bin/fasta2frag.tcl && \ cp fasta2frag.tcl /«PKGBUILDDIR»/debian/mira-assembler/usr/bin make[8]: Leaving directory '/«PKGBUILDDIR»/src/scripts' make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/scripts' make[6]: Leaving directory '/«PKGBUILDDIR»/src/scripts' make[6]: Entering directory '/«PKGBUILDDIR»/src' make[7]: Entering directory '/«PKGBUILDDIR»/src' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src' make[4]: Leaving directory '/«PKGBUILDDIR»/src' make[4]: Entering directory '/«PKGBUILDDIR»' make[5]: Entering directory '/«PKGBUILDDIR»' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/«PKGBUILDDIR»' make[4]: Leaving directory '/«PKGBUILDDIR»' make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' #There is no installation target for the docs mkdir -p /«PKGBUILDDIR»/debian/tmp/usr/share/doc/mira-assembler cp -r -t /«PKGBUILDDIR»/debian/tmp/usr/share/doc/mira-assembler doc/docbook/bookfigures doc/docbook/images \ doc/docbook/doccss doc/docbook/DefinitiveGuideToMIRA.html || true cp: cannot stat 'doc/docbook/DefinitiveGuideToMIRA.html': No such file or directory make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_install make[1]: Entering directory '/«PKGBUILDDIR»' dh_install if [ -d debian/mira-assembler ] ; then \ for f in $(ls debian/mira-assembler/usr/bin/*.tcl) ; do mv "$f" "${f%.tcl}"; done \ fi # In version 3.9.17 executing miraSearchESTSNPs just leads to "De-activated atm, sorry." # If this is the case, it should not be installed for deactivated in miraSearchESTSNPs miraclip ; do \ if [ -e debian/mira-assembler/usr/bin/${deactivated} ] ; then \ if [ "`debian/mira-assembler/usr/bin/${deactivated} 2>&1 | tee`" = "De-activated atm, sorry." ] ; then rm -f debian/mira-assembler/usr/bin/${deactivated} ; fi \ else \ echo "debian/mira-assembler/usr/bin/${deactivated} does not exist" ; \ fi ; \ done debian/mira-assembler/usr/bin/miraSearchESTSNPs does not exist debian/mira-assembler/usr/bin/miraclip does not exist make[1]: Leaving directory '/«PKGBUILDDIR»' dh_installdocs -a install -d debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a NEWS debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a README debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a THANKS debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a HELP_WANTED debian/mira-assembler/usr/share/doc/mira-assembler chown -R 0:0 debian/mira-assembler/usr/share/doc chmod -R go=rX debian/mira-assembler/usr/share/doc chmod -R u\+rw debian/mira-assembler/usr/share/doc install -p -m0644 debian/copyright debian/mira-assembler/usr/share/doc/mira-assembler/copyright dh_installchangelogs -a install -p -m0644 debian/changelog debian/mira-assembler/usr/share/doc/mira-assembler/changelog.Debian debian/rules override_dh_installexamples make[1]: Entering directory '/«PKGBUILDDIR»' dh_installexamples # avoid duplicated files if cmp /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.fasta.qual /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.sanger.fasta.qual >/dev/null ; then \ echo "removing copy of usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.fasta.qual and create symling" ; \ rm -f /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.sanger.fasta.qual ; \ ln -s cjejuni_demo_in.fasta.qual.gz /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.sanger.fasta.qual.gz ; \ fi cmp: /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.fasta.qual: No such file or directory if cmp /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.fasta /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.sanger.fasta >/dev/null ; then \ echo "removing copy of usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.fasta and create symling" ; \ rm -f /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.sanger.fasta ; \ ln -s cjejuni_demo_in.fasta.gz /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.sanger.fasta.gz ; \ fi cmp: /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.fasta: No such file or directory if cmp /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_NCTC11168_first40kb.gbf /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_backbone_in.gbf >/dev/null ; then \ echo "removing copy of usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_NCTC11168_first40kb.gbf and create symling" ; \ rm -f /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_backbone_in.gbf ; \ ln -s cjejuni_NCTC11168_first40kb.gbf.gz /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_backbone_in.gbf.gz ; \ fi cmp: /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_NCTC11168_first40kb.gbf: No such file or directory if cmp /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_traceinfo_in.xml /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_traceinfo_in.sanger.xml >/dev/null ; then \ echo "removing copy of usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_traceinfo_in.xml and create symling" ; \ rm -f /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_traceinfo_in.sanger.xml ; \ ln -s cjejuni_demo_traceinfo_in.xml.gz /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_traceinfo_in.sanger.xml.gz ; \ fi cmp: /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_traceinfo_in.xml: No such file or directory make[1]: Leaving directory '/«PKGBUILDDIR»' dh_installman -a install -d debian/mira-assembler/usr/share/man/man1/ install -p -m0644 debian/mans/convert_project.1 debian/mira-assembler/usr/share/man/man1/convert_project.1 install -p -m0644 debian/mans/fasta2frag.1 debian/mira-assembler/usr/share/man/man1/fasta2frag.1 install -p -m0644 debian/mans/fastaselect.1 debian/mira-assembler/usr/share/man/man1/fastaselect.1 install -p -m0644 debian/mans/fastatool.1 debian/mira-assembler/usr/share/man/man1/fastatool.1 install -p -m0644 debian/mans/fastqselect.1 debian/mira-assembler/usr/share/man/man1/fastqselect.1 install -p -m0644 debian/mans/fixACE4consed.1 debian/mira-assembler/usr/share/man/man1/fixACE4consed.1 install -p -m0644 debian/mans/mira.1 debian/mira-assembler/usr/share/man/man1/mira.1 install -p -m0644 debian/mans/mirabait.1 debian/mira-assembler/usr/share/man/man1/mirabait.1 install -p -m0644 debian/mans/miraconvert.1 debian/mira-assembler/usr/share/man/man1/miraconvert.1 install -p -m0644 debian/mans/miradiff.1 debian/mira-assembler/usr/share/man/man1/miradiff.1 install -p -m0644 debian/mans/miramem.1 debian/mira-assembler/usr/share/man/man1/miramem.1 install -p -m0644 debian/mans/miramer.1 debian/mira-assembler/usr/share/man/man1/miramer.1 install -p -m0644 debian/mans/miraSearchESTSNPs.1 debian/mira-assembler/usr/share/man/man1/miraSearchESTSNPs.1 install -p -m0644 debian/mans/scftool.1 debian/mira-assembler/usr/share/man/man1/scftool.1 man --recode UTF-8 ./fixACE4consed\.1 > fixACE4consed\.1\.new chmod 644 fixACE4consed.1.new mv -f fixACE4consed.1.new fixACE4consed.1 man --recode UTF-8 ./miramem\.1 > miramem\.1\.new chmod 644 miramem.1.new mv -f miramem.1.new miramem.1 man --recode UTF-8 ./miraSearchESTSNPs\.1 > miraSearchESTSNPs\.1\.new chmod 644 miraSearchESTSNPs.1.new mv -f miraSearchESTSNPs.1.new miraSearchESTSNPs.1 man --recode UTF-8 ./miraconvert\.1 > miraconvert\.1\.new chmod 644 miraconvert.1.new mv -f miraconvert.1.new miraconvert.1 man --recode UTF-8 ./fastatool\.1 > fastatool\.1\.new chmod 644 fastatool.1.new mv -f fastatool.1.new fastatool.1 man --recode UTF-8 ./scftool\.1 > scftool\.1\.new chmod 644 scftool.1.new mv -f scftool.1.new scftool.1 man --recode UTF-8 ./fastaselect\.1 > fastaselect\.1\.new chmod 644 fastaselect.1.new mv -f fastaselect.1.new fastaselect.1 man --recode UTF-8 ./convert_project\.1 > convert_project\.1\.new chmod 644 convert_project.1.new mv -f convert_project.1.new convert_project.1 man --recode UTF-8 ./miramer\.1 > miramer\.1\.new chmod 644 miramer.1.new mv -f miramer.1.new miramer.1 man --recode UTF-8 ./mirabait\.1 > mirabait\.1\.new chmod 644 mirabait.1.new mv -f mirabait.1.new mirabait.1 man --recode UTF-8 ./miradiff\.1 > miradiff\.1\.new chmod 644 miradiff.1.new mv -f miradiff.1.new miradiff.1 man --recode UTF-8 ./fastqselect\.1 > fastqselect\.1\.new chmod 644 fastqselect.1.new mv -f fastqselect.1.new fastqselect.1 man --recode UTF-8 ./mira\.1 > mira\.1\.new chmod 644 mira.1.new mv -f mira.1.new mira.1 man --recode UTF-8 ./fasta2frag\.1 > fasta2frag\.1\.new chmod 644 fasta2frag.1.new mv -f fasta2frag.1.new fasta2frag.1 dh_lintian -a install -d debian/mira-assembler/usr/share/lintian/overrides install -p -m0644 debian/mira-assembler.lintian-overrides debian/mira-assembler/usr/share/lintian/overrides/mira-assembler dh_perl -a dh_link -a rm -f debian/mira-assembler/usr/bin/miramer ln -sf mira debian/mira-assembler/usr/bin/miramer rm -f debian/mira-assembler/usr/bin/mirabait ln -sf mira debian/mira-assembler/usr/bin/mirabait rm -f debian/mira-assembler/usr/bin/miraconvert ln -sf mira debian/mira-assembler/usr/bin/miraconvert rm -f debian/mira-assembler/usr/bin/miramem ln -sf mira debian/mira-assembler/usr/bin/miramem dh_strip_nondeterminism -a dh_compress -a cd debian/mira-assembler chmod a-x usr/share/doc/mira-assembler/NEWS usr/share/doc/mira-assembler/changelog.Debian usr/share/man/man1/convert_project.1 usr/share/man/man1/fasta2frag.1 usr/share/man/man1/fastaselect.1 usr/share/man/man1/fastatool.1 usr/share/man/man1/fastqselect.1 usr/share/man/man1/fixACE4consed.1 usr/share/man/man1/mira.1 usr/share/man/man1/miraSearchESTSNPs.1 usr/share/man/man1/mirabait.1 usr/share/man/man1/miraconvert.1 usr/share/man/man1/miradiff.1 usr/share/man/man1/miramem.1 usr/share/man/man1/miramer.1 usr/share/man/man1/scftool.1 gzip -9nf usr/share/doc/mira-assembler/NEWS usr/share/doc/mira-assembler/changelog.Debian usr/share/man/man1/convert_project.1 usr/share/man/man1/fasta2frag.1 usr/share/man/man1/fastaselect.1 usr/share/man/man1/fastatool.1 usr/share/man/man1/fastqselect.1 usr/share/man/man1/fixACE4consed.1 usr/share/man/man1/mira.1 usr/share/man/man1/miraSearchESTSNPs.1 usr/share/man/man1/mirabait.1 usr/share/man/man1/miraconvert.1 usr/share/man/man1/miradiff.1 usr/share/man/man1/miramem.1 usr/share/man/man1/miramer.1 usr/share/man/man1/scftool.1 cd '/«PKGBUILDDIR»' dh_fixperms -a find debian/mira-assembler -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/mira-assembler ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/mira-assembler/usr/share/doc -type f ! -regex 'debian/mira-assembler/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 0755 find debian/mira-assembler/usr/share/man debian/mira-assembler/usr/man/ debian/mira-assembler/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler/usr/lib/powerpc-linux-gnu/perl5/5.22 debian/mira-assembler/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/mira-assembler -perm -5 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x find debian/mira-assembler/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w find debian/mira-assembler/usr/share/lintian/overrides -type f -print0 2>/dev/null | xargs -0r chmod 0644 dh_strip -a dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform powerpc: mira-assembler dh_strip debug symbol extraction: packages to act on: mira-assembler dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol strip --remove-section=.comment --remove-section=.note debian/mira-assembler/usr/bin/mira dh_makeshlibs -a rm -f debian/mira-assembler/DEBIAN/shlibs dh_shlibdeps -a install -d debian/mira-assembler/DEBIAN dpkg-shlibdeps -Tdebian/mira-assembler.substvars debian/mira-assembler/usr/bin/mira dh_installdeb -a dh_gencontrol -a echo misc:Depends= >> debian/mira-assembler.substvars echo misc:Pre-Depends= >> debian/mira-assembler.substvars dpkg-gencontrol -pmira-assembler -ldebian/changelog -Tdebian/mira-assembler.substvars -Pdebian/mira-assembler dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe chmod 0644 debian/mira-assembler/DEBIAN/control chown 0:0 debian/mira-assembler/DEBIAN/control dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform powerpc: mira-assembler dh_gencontrol debug symbol wrapper: packages to act on: mira-assembler dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package mira-assembler (pkgdir debian/mira-assembler, ddeb package dir debian/mira-assembler-dbgsym) dh_gencontrol debug symbol wrapper: building mira-assembler-dbgsym_4.9.5-3_powerpc.ddeb dpkg-deb: building package 'mira-assembler-dbgsym' in '../mira-assembler-dbgsym_4.9.5-3_powerpc.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile mira-assembler-dbgsym_4.9.5-3_powerpc.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a (cd debian/mira-assembler >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 0644 debian/mira-assembler/DEBIAN/md5sums chown 0:0 debian/mira-assembler/DEBIAN/md5sums debian/rules override_dh_builddeb make[1]: Entering directory '/«PKGBUILDDIR»' dh_builddeb -- -Z xz dpkg-deb -Z xz --build debian/mira-assembler .. INFO: pkgstriptranslations version 129 pkgstriptranslations: processing mira-assembler (in debian/mira-assembler); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/mira-assembler/DEBIAN/control, package mira-assembler, directory debian/mira-assembler pkgstripfiles: Truncating usr/share/doc/mira-assembler/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 8 cpus) for package mira-assembler ... pkgstripfiles: No PNG files. dpkg-deb: building package 'mira-assembler' in '../mira-assembler_4.9.5-3_powerpc.deb'. make[1]: Leaving directory '/«PKGBUILDDIR»' dpkg-genchanges -B -mLaunchpad Build Daemon >../mira_4.9.5-3_powerpc.changes dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build mira-4.9.5 dpkg-buildpackage: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20160127-1228 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ mira_4.9.5-3_powerpc.changes: ───────────────────────────── Format: 1.8 Date: Wed, 27 Jan 2016 13:19:53 +0100 Source: mira Binary: mira-assembler mira-examples mira-doc Architecture: powerpc Version: 4.9.5-3 Distribution: xenial-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: mira-assembler - Whole Genome Shotgun and EST Sequence Assembler mira-doc - documentation for the mira assembler mira-examples - files to experiment with the mira assembler Closes: 812681 Changes: mira (4.9.5-3) unstable; urgency=medium . * Remove *.cc files that are created by old flex version which breaks build otherwise Closes: #812681 Checksums-Sha1: 2658484064b9bae2698d25dda59a724c6ca8b87d 13689132 mira-assembler-dbgsym_4.9.5-3_powerpc.ddeb 861903cdf7f9b0166a4afbb002a21a3b9c42dd81 1869064 mira-assembler_4.9.5-3_powerpc.deb Checksums-Sha256: 4a0feebbfe4e67b2fe7320cd0ed6870b463749d6ffb89b7b4b8c77a7bdab671b 13689132 mira-assembler-dbgsym_4.9.5-3_powerpc.ddeb 9ca6ed2d5c18cd58025a219b5ddde65e1f0a5c2d20a7768e0169ea3bc575fff7 1869064 mira-assembler_4.9.5-3_powerpc.deb Files: b2c611f9b7083b47ecde959c55c49528 13689132 science extra mira-assembler-dbgsym_4.9.5-3_powerpc.ddeb 22c859f8aec7ec33b120833067a46fd6 1869064 science optional mira-assembler_4.9.5-3_powerpc.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ mira-assembler_4.9.5-3_powerpc.deb ────────────────────────────────── new debian package, version 2.0. size 1869064 bytes: control archive=2376 bytes. 2612 bytes, 48 lines control 2035 bytes, 29 lines md5sums Package: mira-assembler Source: mira Version: 4.9.5-3 Architecture: powerpc Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 5421 Depends: libboost-filesystem1.58.0, libboost-regex1.58.0, libboost-system1.58.0, libboost-thread1.58.0, libc6 (>= 2.4), libexpat1 (>= 2.0.1), libgcc1 (>= 1:4.2), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.6) Suggests: mira-examples, mira-doc Section: science Priority: optional Homepage: http://chevreux.org/projects_mira.html Description: Whole Genome Shotgun and EST Sequence Assembler The mira genome fragment assembler is a specialised assembler for sequencing projects classified as 'hard' due to high number of similar repeats. For expressed sequence tags (ESTs) transcripts, miraEST is specialised on reconstructing pristine mRNA transcripts while detecting and classifying single nucleotide polymorphisms (SNP) occuring in different variations thereof. . The assembler is routinely used for such various tasks as mutation detection in different cell types, similarity analysis of transcripts between organisms, and pristine assembly of sequences from various sources for oligo design in clinical microarray experiments. . The package provides the following executables: Binaries provided: * mira: for assembly of genome sequences * miramem: estimating memory needed to assemble projects. Realised through link to mira. * convert_project: for converting project file types into other types * caf2fasta, caf2gbf, caf2text, caf2html, gbf2caf and gbf2fasta are some frequently used file converters (realised through links to convert_project) * scftool: set of tools useful when working with SCF trace files * fastatool: set of tools useful when working with FASTA trace files . Scripts provided: * fasta2frag: fragmenting sequences into smaller, overlapping subsequences. Useful for simulating shotgun sequences. Can create subsequences in both directions (/default) and also paired-end sequences. * fastaselect: given a FASTA file (and possibly a FASTA quality file) and a file with names of reads, select the sequences from the input FASTA (and quality file) and writes them to an output FASTA * fastqselect: like fastaselect, only for FASTQ * fixACE4consed: Consed has a bug which incapacitates it from reading consensus tags in ACE files written by the MIRA assembler (and possibly other programs). This script massages an ACE file so that consed can read the consensus tags. drwxr-xr-x root/root 0 2016-01-27 12:27 ./ drwxr-xr-x root/root 0 2016-01-27 12:27 ./usr/ drwxr-xr-x root/root 0 2016-01-27 12:27 ./usr/bin/ -rwxr-xr-x root/root 15396 2016-01-27 12:27 ./usr/bin/fasta2frag -rwxr-xr-x root/root 1617 2016-01-27 12:27 ./usr/bin/fixACE4consed -rwxr-xr-x root/root 5454400 2016-01-27 12:27 ./usr/bin/mira lrwxrwxrwx root/root 0 2016-01-27 12:27 ./usr/bin/mirabait -> mira lrwxrwxrwx root/root 0 2016-01-27 12:27 ./usr/bin/miraconvert -> mira lrwxrwxrwx root/root 0 2016-01-27 12:27 ./usr/bin/miramem -> mira lrwxrwxrwx root/root 0 2016-01-27 12:27 ./usr/bin/miramer -> mira drwxr-xr-x root/root 0 2016-01-27 12:27 ./usr/share/ drwxr-xr-x root/root 0 2016-01-27 12:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-01-27 12:27 ./usr/share/doc/mira-assembler/ -rw-r--r-- root/root 1384 2015-05-14 10:38 ./usr/share/doc/mira-assembler/HELP_WANTED -rw-r--r-- root/root 263 2015-05-14 10:38 ./usr/share/doc/mira-assembler/NEWS.gz -rw-r--r-- root/root 2692 2015-05-14 10:38 ./usr/share/doc/mira-assembler/README -rw-r--r-- root/root 3855 2015-05-14 10:38 ./usr/share/doc/mira-assembler/THANKS -rw-r--r-- root/root 2002 2016-01-27 12:28 ./usr/share/doc/mira-assembler/changelog.Debian.gz -rw-r--r-- root/root 2400 2013-09-12 04:58 ./usr/share/doc/mira-assembler/copyright drwxr-xr-x root/root 0 2016-01-27 12:27 ./usr/share/lintian/ drwxr-xr-x root/root 0 2016-01-27 12:27 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 147 2013-09-26 11:26 ./usr/share/lintian/overrides/mira-assembler drwxr-xr-x root/root 0 2016-01-27 12:27 ./usr/share/man/ drwxr-xr-x root/root 0 2016-01-27 12:27 ./usr/share/man/man1/ -rw-r--r-- root/root 3198 2016-01-27 12:27 ./usr/share/man/man1/convert_project.1.gz -rw-r--r-- root/root 1257 2016-01-27 12:27 ./usr/share/man/man1/fasta2frag.1.gz -rw-r--r-- root/root 847 2016-01-27 12:27 ./usr/share/man/man1/fastaselect.1.gz -rw-r--r-- root/root 916 2016-01-27 12:27 ./usr/share/man/man1/fastatool.1.gz -rw-r--r-- root/root 847 2016-01-27 12:27 ./usr/share/man/man1/fastqselect.1.gz -rw-r--r-- root/root 681 2016-01-27 12:27 ./usr/share/man/man1/fixACE4consed.1.gz -rw-r--r-- root/root 1026 2016-01-27 12:27 ./usr/share/man/man1/mira.1.gz -rw-r--r-- root/root 1084 2016-01-27 12:27 ./usr/share/man/man1/miraSearchESTSNPs.1.gz -rw-r--r-- root/root 876 2016-01-27 12:27 ./usr/share/man/man1/mirabait.1.gz -rw-r--r-- root/root 3250 2016-01-27 12:27 ./usr/share/man/man1/miraconvert.1.gz -rw-r--r-- root/root 673 2016-01-27 12:27 ./usr/share/man/man1/miradiff.1.gz -rw-r--r-- root/root 770 2016-01-27 12:27 ./usr/share/man/man1/miramem.1.gz -rw-r--r-- root/root 671 2016-01-27 12:27 ./usr/share/man/man1/miramer.1.gz -rw-r--r-- root/root 880 2016-01-27 12:27 ./usr/share/man/man1/scftool.1.gz drwxr-xr-x root/root 0 2016-01-27 12:27 ./usr/share/mira/ -rw-r--r-- root/root 13225 2016-01-27 12:27 ./usr/share/mira/demoparam.prm drwxr-xr-x root/root 0 2016-01-27 12:27 ./usr/share/mira/support_3rdparty_tools/ -rw-r--r-- root/root 2571 2016-01-27 12:27 ./usr/share/mira/support_3rdparty_tools/GTAGDB -rw-r--r-- root/root 735 2016-01-27 12:27 ./usr/share/mira/support_3rdparty_tools/README -rw-r--r-- root/root 58 2016-01-27 12:27 ./usr/share/mira/support_3rdparty_tools/consedrc.13.0 -rw-r--r-- root/root 762 2016-01-27 12:27 ./usr/share/mira/support_3rdparty_tools/consedtaglib.txt ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: powerpc Build-Space: 493132 Build-Time: 184 Distribution: xenial-proposed Host Architecture: powerpc Install-Time: 224 Job: mira_4.9.5-3.dsc Machine Architecture: powerpc Package: mira Package-Time: 411 Source-Version: 4.9.5-3 Space: 493132 Status: successful Version: 4.9.5-3 ──────────────────────────────────────────────────────────────────────────────── Finished at 20160127-1228 Build needed 00:06:51, 493132k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-8903490'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-8903490/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-8903490'] Unmounting chroot for build PACKAGEBUILD-8903490... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-8903490'] Removing build PACKAGEBUILD-8903490