RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux templar 3.13.0-65-generic #105-Ubuntu SMP Mon Sep 21 19:10:52 UTC 2015 aarch64 Buildd toolchain package versions: launchpad-buildd_134 python-lpbuildd_134 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa6 dpkg-dev_1.17.5ubuntu5.4 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1. Syncing the system clock with the buildd NTP service... 4 Dec 20:14:22 ntpdate[833]: adjust time server 10.211.37.1 offset -0.034789 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-8393487', '/home/buildd/filecache-default/e4334328d0a439a5c9a1262cdf1f64d583863c1f'] Unpacking chroot for build PACKAGEBUILD-8393487 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-8393487'] Mounting chroot for build PACKAGEBUILD-8393487 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-8393487', 'deb http://ftpmaster.internal/ubuntu xenial main universe', 'deb http://ftpmaster.internal/ubuntu xenial-security main universe', 'deb http://ftpmaster.internal/ubuntu xenial-updates main universe', 'deb http://ftpmaster.internal/ubuntu xenial-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-8393487 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-8393487', 'arm64'] Updating debian chroot for build PACKAGEBUILD-8393487 Get:1 http://ftpmaster.internal xenial InRelease [227 kB] Get:2 http://ftpmaster.internal xenial-security InRelease [73.5 kB] Get:3 http://ftpmaster.internal xenial-updates InRelease [73.5 kB] Get:4 http://ftpmaster.internal xenial-proposed InRelease [227 kB] Get:5 http://ftpmaster.internal xenial/main arm64 Packages [1400 kB] Get:6 http://ftpmaster.internal xenial/universe arm64 Packages [6813 kB] Get:7 http://ftpmaster.internal xenial/main Translation-en [848 kB] Get:8 http://ftpmaster.internal xenial/universe Translation-en [4728 kB] Get:9 http://ftpmaster.internal xenial-security/main arm64 Packages [28 B] Get:10 http://ftpmaster.internal xenial-security/universe arm64 Packages [28 B] Get:11 http://ftpmaster.internal xenial-security/main Translation-en [28 B] Get:12 http://ftpmaster.internal xenial-security/universe Translation-en [28 B] Get:13 http://ftpmaster.internal xenial-updates/main arm64 Packages [28 B] Get:14 http://ftpmaster.internal xenial-updates/universe arm64 Packages [28 B] Get:15 http://ftpmaster.internal xenial-updates/main Translation-en [28 B] Get:16 http://ftpmaster.internal xenial-updates/universe Translation-en [28 B] Get:17 http://ftpmaster.internal xenial-proposed/main arm64 Packages [84.1 kB] Get:18 http://ftpmaster.internal xenial-proposed/universe arm64 Packages [269 kB] Get:19 http://ftpmaster.internal xenial-proposed/main Translation-en [49.2 kB] Get:20 http://ftpmaster.internal xenial-proposed/universe Translation-en [174 kB] Fetched 15.0 MB in 9s (1606 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 udev Use 'apt-get autoremove' to remove them. The following NEW packages will be installed: libapt-pkg5.0 libisl15 libprocps4 The following packages will be upgraded: advancecomp apt apt-transport-https base-files binutils bsdutils cpp cpp-5 debconf diffutils dpkg dpkg-dev e2fslibs e2fsprogs findutils g++ g++-5 gcc gcc-5 gcc-5-base gnupg gpgv grep hostname init initscripts libapparmor1 libasan2 libatomic1 libaudit-common libaudit1 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcap2-bin libcc1-0 libcomerr2 libcurl3-gnutls libdbus-1-3 libdebconfclient0 libdpkg-perl libfdisk1 libgcc-5-dev libgcc1 libgcrypt20 libgmp10 libgnutls-deb0-28 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn11 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 libmount1 libncurses5 libncursesw5 libpng12-0 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libuuid1 linux-libc-dev lsb-base mount multiarch-support ncurses-base ncurses-bin openssl pkg-create-dbgsym pkgbinarymangler procps systemd systemd-sysv sysv-rc sysvinit-utils tar udev util-linux 95 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 101 MB of archives. After this operation, 290 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ xenial/main base-files arm64 9.4ubuntu3 [68.5 kB] Get:2 http://ftpmaster.internal/ubuntu/ xenial/main bsdutils arm64 1:2.27.1-1ubuntu3 [49.0 kB] Get:3 http://ftpmaster.internal/ubuntu/ xenial/main diffutils arm64 1:3.3-2 [144 kB] Get:4 http://ftpmaster.internal/ubuntu/ xenial/main dpkg arm64 1.18.3ubuntu1 [2038 kB] Get:5 http://ftpmaster.internal/ubuntu/ xenial/main libc6-dev arm64 2.21-0ubuntu5 [1677 kB] Get:6 http://ftpmaster.internal/ubuntu/ xenial/main libc-dev-bin arm64 2.21-0ubuntu5 [58.8 kB] Get:7 http://ftpmaster.internal/ubuntu/ xenial/main linux-libc-dev arm64 4.3.0-1.10 [788 kB] Get:8 http://ftpmaster.internal/ubuntu/ xenial/main libcap2 arm64 1:2.24-12 [12.0 kB] Get:9 http://ftpmaster.internal/ubuntu/ xenial/main libc-bin arm64 2.21-0ubuntu5 [1035 kB] Get:10 http://ftpmaster.internal/ubuntu/ xenial/main libgomp1 arm64 5.2.1-27ubuntu1 [45.8 kB] Get:11 http://ftpmaster.internal/ubuntu/ xenial/main libitm1 arm64 5.2.1-27ubuntu1 [23.8 kB] Get:12 http://ftpmaster.internal/ubuntu/ xenial/main libatomic1 arm64 5.2.1-27ubuntu1 [6386 B] Get:13 http://ftpmaster.internal/ubuntu/ xenial/main libasan2 arm64 5.2.1-27ubuntu1 [232 kB] Get:14 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5-base arm64 5.2.1-27ubuntu1 [17.0 kB] Get:15 http://ftpmaster.internal/ubuntu/ xenial/main libgcc1 arm64 1:5.2.1-27ubuntu1 [30.9 kB] Get:16 http://ftpmaster.internal/ubuntu/ xenial/main libubsan0 arm64 5.2.1-27ubuntu1 [88.1 kB] Get:17 http://ftpmaster.internal/ubuntu/ xenial/main libisl15 arm64 0.15-3 [393 kB] Get:18 http://ftpmaster.internal/ubuntu/ xenial/main cpp-5 arm64 5.2.1-27ubuntu1 [22.9 MB] Get:19 http://ftpmaster.internal/ubuntu/ xenial/main libcc1-0 arm64 5.2.1-27ubuntu1 [27.3 kB] Get:20 http://ftpmaster.internal/ubuntu/ xenial/main binutils arm64 2.25.90.20151125-2ubuntu1 [2517 kB] Get:21 http://ftpmaster.internal/ubuntu/ xenial/main g++-5 arm64 5.2.1-27ubuntu1 [24.5 MB] Get:22 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5 arm64 5.2.1-27ubuntu1 [23.2 MB] Get:23 http://ftpmaster.internal/ubuntu/ xenial/main libgcc-5-dev arm64 5.2.1-27ubuntu1 [494 kB] Get:24 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++-5-dev arm64 5.2.1-27ubuntu1 [1369 kB] Get:25 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++6 arm64 5.2.1-27ubuntu1 [362 kB] Get:26 http://ftpmaster.internal/ubuntu/ xenial/main libgmp10 arm64 2:6.1.0+dfsg-2 [202 kB] Get:27 http://ftpmaster.internal/ubuntu/ xenial/main libc6 arm64 2.21-0ubuntu5 [4077 kB] Get:28 http://ftpmaster.internal/ubuntu/ xenial/main e2fslibs arm64 1.42.13-1ubuntu1 [169 kB] Get:29 http://ftpmaster.internal/ubuntu/ xenial/main e2fsprogs arm64 1.42.13-1ubuntu1 [744 kB] Get:30 http://ftpmaster.internal/ubuntu/ xenial/main findutils arm64 4.4.2-10 [258 kB] Get:31 http://ftpmaster.internal/ubuntu/ xenial-proposed/main grep arm64 2.22-1 [135 kB] Get:32 http://ftpmaster.internal/ubuntu/ xenial/main hostname arm64 3.16ubuntu2 [11.2 kB] Get:33 http://ftpmaster.internal/ubuntu/ xenial/main init arm64 1.24ubuntu2 [3964 B] Get:34 http://ftpmaster.internal/ubuntu/ xenial/main libsmartcols1 arm64 2.27.1-1ubuntu3 [52.2 kB] Get:35 http://ftpmaster.internal/ubuntu/ xenial/main libuuid1 arm64 2.27.1-1ubuntu3 [14.0 kB] Get:36 http://ftpmaster.internal/ubuntu/ xenial/main libblkid1 arm64 2.27.1-1ubuntu3 [87.5 kB] Get:37 http://ftpmaster.internal/ubuntu/ xenial/main libfdisk1 arm64 2.27.1-1ubuntu3 [113 kB] Get:38 http://ftpmaster.internal/ubuntu/ xenial/main debconf all 1.5.58ubuntu1 [136 kB] Get:39 http://ftpmaster.internal/ubuntu/ xenial/main sysvinit-utils arm64 2.88dsf-59.2ubuntu3 [25.1 kB] Get:40 http://ftpmaster.internal/ubuntu/ xenial/main sysv-rc all 2.88dsf-59.2ubuntu3 [36.1 kB] Get:41 http://ftpmaster.internal/ubuntu/ xenial/main initscripts arm64 2.88dsf-59.2ubuntu3 [24.7 kB] Get:42 http://ftpmaster.internal/ubuntu/ xenial/main util-linux arm64 2.27.1-1ubuntu3 [785 kB] Get:43 http://ftpmaster.internal/ubuntu/ xenial/main libudev1 arm64 228-2ubuntu1 [46.7 kB] Get:44 http://ftpmaster.internal/ubuntu/ xenial/main udev arm64 228-2ubuntu1 [926 kB] Get:45 http://ftpmaster.internal/ubuntu/ xenial/main libsystemd0 arm64 228-2ubuntu1 [162 kB] Get:46 http://ftpmaster.internal/ubuntu/ xenial/main systemd arm64 228-2ubuntu1 [3007 kB] Get:47 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libselinux1 arm64 2.4-3 [46.4 kB] Get:48 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libtinfo5 arm64 6.0+20151024-2ubuntu1 [66.5 kB] Get:49 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libncurses5 arm64 6.0+20151024-2ubuntu1 [75.3 kB] Get:50 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libncursesw5 arm64 6.0+20151024-2ubuntu1 [92.8 kB] Get:51 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libprocps4 arm64 2:3.3.10-4ubuntu1 [28.7 kB] Get:52 http://ftpmaster.internal/ubuntu/ xenial-proposed/main procps arm64 2:3.3.10-4ubuntu1 [208 kB] Get:53 http://ftpmaster.internal/ubuntu/ xenial/main libapparmor1 arm64 2.10-0ubuntu8 [26.2 kB] Get:54 http://ftpmaster.internal/ubuntu/ xenial/main libaudit-common all 1:2.4.4-4ubuntu1 [3892 B] Get:55 http://ftpmaster.internal/ubuntu/ xenial/main libaudit1 arm64 1:2.4.4-4ubuntu1 [33.4 kB] Get:56 http://ftpmaster.internal/ubuntu/ xenial/main libmount1 arm64 2.27.1-1ubuntu3 [93.7 kB] Get:57 http://ftpmaster.internal/ubuntu/ xenial/main libcap2-bin arm64 1:2.24-12 [20.0 kB] Get:58 http://ftpmaster.internal/ubuntu/ xenial/main lsb-base all 9.20150917ubuntu1 [13.4 kB] Get:59 http://ftpmaster.internal/ubuntu/ xenial/main mount arm64 2.27.1-1ubuntu3 [115 kB] Get:60 http://ftpmaster.internal/ubuntu/ xenial-proposed/main ncurses-bin arm64 6.0+20151024-2ubuntu1 [130 kB] Get:61 http://ftpmaster.internal/ubuntu/ xenial/main tar arm64 1.28-2.1 [184 kB] Get:62 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libapt-pkg5.0 arm64 1.1.3 [621 kB] Get:63 http://ftpmaster.internal/ubuntu/ xenial-proposed/main apt arm64 1.1.3 [938 kB] Get:64 http://ftpmaster.internal/ubuntu/ xenial/main gpgv arm64 1.4.19-6ubuntu1 [138 kB] Get:65 http://ftpmaster.internal/ubuntu/ xenial/main gnupg arm64 1.4.19-6ubuntu1 [565 kB] Get:66 http://ftpmaster.internal/ubuntu/ xenial-proposed/main ncurses-base all 6.0+20151024-2ubuntu1 [17.1 kB] Get:67 http://ftpmaster.internal/ubuntu/ xenial/main systemd-sysv arm64 228-2ubuntu1 [14.8 kB] Get:68 http://ftpmaster.internal/ubuntu/ xenial/main libcomerr2 arm64 1.42.13-1ubuntu1 [65.1 kB] Get:69 http://ftpmaster.internal/ubuntu/ xenial/main libdebconfclient0 arm64 0.198ubuntu1 [6202 B] Get:70 http://ftpmaster.internal/ubuntu/ xenial/main libgpg-error0 arm64 1.20-1 [28.5 kB] Get:71 http://ftpmaster.internal/ubuntu/ xenial/main libgcrypt20 arm64 1.6.4-3 [270 kB] Get:72 http://ftpmaster.internal/ubuntu/ xenial/main libsepol1 arm64 2.4-2 [150 kB] Get:73 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsemanage-common all 2.4-3 [6744 B] Get:74 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsemanage1 arm64 2.4-3 [65.2 kB] Get:75 http://ftpmaster.internal/ubuntu/ xenial/main libss2 arm64 1.42.13-1ubuntu1 [68.6 kB] Get:76 http://ftpmaster.internal/ubuntu/ xenial/main multiarch-support arm64 2.21-0ubuntu5 [7180 B] Get:77 http://ftpmaster.internal/ubuntu/ xenial/main libtasn1-6 arm64 4.7-2 [37.7 kB] Get:78 http://ftpmaster.internal/ubuntu/ xenial/main libgnutls-deb0-28 arm64 3.3.18-1ubuntu1 [415 kB] Get:79 http://ftpmaster.internal/ubuntu/ xenial/main libpng12-0 arm64 1.2.54-1 [106 kB] Get:80 http://ftpmaster.internal/ubuntu/ xenial/main libsqlite3-0 arm64 3.9.2-1 [332 kB] Get:81 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libssl1.0.0 arm64 1.0.2e-1ubuntu1 [694 kB] Get:82 http://ftpmaster.internal/ubuntu/ xenial/main libgssapi-krb5-2 arm64 1.13.2+dfsg-4 [96.7 kB] Get:83 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5-3 arm64 1.13.2+dfsg-4 [228 kB] Get:84 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5support0 arm64 1.13.2+dfsg-4 [27.4 kB] Get:85 http://ftpmaster.internal/ubuntu/ xenial/main libk5crypto3 arm64 1.13.2+dfsg-4 [73.2 kB] Get:86 http://ftpmaster.internal/ubuntu/ xenial/main libidn11 arm64 1.32-3ubuntu1 [42.3 kB] Get:87 http://ftpmaster.internal/ubuntu/ xenial/main libcurl3-gnutls arm64 7.45.0-1ubuntu1 [151 kB] Get:88 http://ftpmaster.internal/ubuntu/ xenial-proposed/main apt-transport-https arm64 1.1.3 [23.7 kB] Get:89 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libdbus-1-3 arm64 1.10.6-1ubuntu1 [136 kB] Get:90 http://ftpmaster.internal/ubuntu/ xenial-proposed/main openssl arm64 1.0.2e-1ubuntu1 [470 kB] Get:91 http://ftpmaster.internal/ubuntu/ xenial/main advancecomp arm64 1.20-1 [145 kB] Get:92 http://ftpmaster.internal/ubuntu/ xenial/main cpp arm64 4:5.2.1-16ubuntu2 [27.6 kB] Get:93 http://ftpmaster.internal/ubuntu/ xenial/main dpkg-dev all 1.18.3ubuntu1 [583 kB] Get:94 http://ftpmaster.internal/ubuntu/ xenial/main libdpkg-perl all 1.18.3ubuntu1 [195 kB] Get:95 http://ftpmaster.internal/ubuntu/ xenial/main gcc arm64 4:5.2.1-16ubuntu2 [5230 B] Get:96 http://ftpmaster.internal/ubuntu/ xenial/main g++ arm64 4:5.2.1-16ubuntu2 [1496 B] Get:97 http://ftpmaster.internal/ubuntu/ xenial/main pkg-create-dbgsym all 0.70 [9046 B] Get:98 http://ftpmaster.internal/ubuntu/ xenial/main pkgbinarymangler all 123 [28.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 101 MB in 59s (1705 kB/s) (Reading database ... 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Setting up libstdc++6:arm64 (5.2.1-27ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11558 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.1.0+dfsg-2_arm64.deb ... Unpacking libgmp10:arm64 (2:6.1.0+dfsg-2) over (2:6.0.0+dfsg-7) ... Preparing to unpack .../libc6_2.21-0ubuntu5_arm64.deb ... Unpacking libc6:arm64 (2.21-0ubuntu5) over (2.21-0ubuntu4) ... Setting up libc6:arm64 (2.21-0ubuntu5) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11558 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.42.13-1ubuntu1_arm64.deb ... Unpacking e2fslibs:arm64 (1.42.13-1ubuntu1) over (1.42.12-1ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up e2fslibs:arm64 (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11558 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.42.13-1ubuntu1_arm64.deb ... Unpacking e2fsprogs (1.42.13-1ubuntu1) over (1.42.12-1ubuntu2) ... Setting up e2fsprogs (1.42.13-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... (Reading database ... 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11570 files and directories currently installed.) Preparing to unpack .../systemd_228-2ubuntu1_arm64.deb ... Unpacking systemd (228-2ubuntu1) over (225-1ubuntu9) ... Setting up systemd (228-2ubuntu1) ... Installing new version of config file /etc/X11/xinit/xinitrc.d/50-systemd-user.sh ... Installing new version of config file /etc/pam.d/systemd-user ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/system.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11569 files and directories currently installed.) Preparing to unpack .../libselinux1_2.4-3_arm64.deb ... Unpacking libselinux1:arm64 (2.4-3) over (2.3-2build1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libselinux1:arm64 (2.4-3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11569 files and directories currently installed.) Preparing to unpack .../libtinfo5_6.0+20151024-2ubuntu1_arm64.deb ... Unpacking libtinfo5:arm64 (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libtinfo5:arm64 (6.0+20151024-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11569 files and directories currently installed.) Preparing to unpack .../libncurses5_6.0+20151024-2ubuntu1_arm64.deb ... Unpacking libncurses5:arm64 (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libncurses5:arm64 (6.0+20151024-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11569 files and directories currently installed.) Preparing to unpack .../libncursesw5_6.0+20151024-2ubuntu1_arm64.deb ... Unpacking libncursesw5:arm64 (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libncursesw5:arm64 (6.0+20151024-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Selecting previously unselected package libprocps4:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11569 files and directories currently installed.) Preparing to unpack .../libprocps4_2%3a3.3.10-4ubuntu1_arm64.deb ... Unpacking libprocps4:arm64 (2:3.3.10-4ubuntu1) ... Preparing to unpack .../procps_2%3a3.3.10-4ubuntu1_arm64.deb ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Unpacking procps (2:3.3.10-4ubuntu1) over (1:3.3.9-1ubuntu8) ... Preparing to unpack .../libapparmor1_2.10-0ubuntu8_arm64.deb ... Unpacking libapparmor1:arm64 (2.10-0ubuntu8) over (2.10-0ubuntu6) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libapparmor1:arm64 (2.10-0ubuntu8) ... Processing triggers for systemd (228-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11578 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a2.4.4-4ubuntu1_all.deb ... Unpacking libaudit-common (1:2.4.4-4ubuntu1) over (1:2.4.2-1ubuntu1) ... Setting up libaudit-common (1:2.4.4-4ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11578 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.4.4-4ubuntu1_arm64.deb ... Unpacking libaudit1:arm64 (1:2.4.4-4ubuntu1) over (1:2.4.2-1ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libaudit1:arm64 (1:2.4.4-4ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11578 files and directories currently installed.) Preparing to unpack .../libmount1_2.27.1-1ubuntu3_arm64.deb ... Unpacking libmount1:arm64 (2.27.1-1ubuntu3) over (2.26.2-6ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libmount1:arm64 (2.27.1-1ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11578 files and directories currently installed.) Preparing to unpack .../libcap2-bin_1%3a2.24-12_arm64.deb ... Unpacking libcap2-bin (1:2.24-12) over (1:2.24-9) ... Setting up libcap2-bin (1:2.24-12) ... (Reading database ... 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Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11602 files and directories currently installed.) Preparing to unpack .../gpgv_1.4.19-6ubuntu1_arm64.deb ... Unpacking gpgv (1.4.19-6ubuntu1) over (1.4.18-7ubuntu1) ... Setting up gpgv (1.4.19-6ubuntu1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11602 files and directories currently installed.) Preparing to unpack .../multiarch-support_2.21-0ubuntu5_arm64.deb ... Unpacking multiarch-support (2.21-0ubuntu5) over (2.21-0ubuntu4) ... Setting up multiarch-support (2.21-0ubuntu5) ... (Reading database ... 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Preparing to unpack .../libcurl3-gnutls_7.45.0-1ubuntu1_arm64.deb ... Unpacking libcurl3-gnutls:arm64 (7.45.0-1ubuntu1) over (7.43.0-1ubuntu2) ... Preparing to unpack .../apt-transport-https_1.1.3_arm64.deb ... Unpacking apt-transport-https (1.1.3) over (1.0.10.2ubuntu1) ... Preparing to unpack .../libdbus-1-3_1.10.6-1ubuntu1_arm64.deb ... Unpacking libdbus-1-3:arm64 (1.10.6-1ubuntu1) over (1.10.0-1ubuntu1) ... Preparing to unpack .../openssl_1.0.2e-1ubuntu1_arm64.deb ... Unpacking openssl (1.0.2e-1ubuntu1) over (1.0.2d-0ubuntu1) ... Preparing to unpack .../advancecomp_1.20-1_arm64.deb ... Unpacking advancecomp (1.20-1) over (1.19-1) ... Preparing to unpack .../cpp_4%3a5.2.1-16ubuntu2_arm64.deb ... Unpacking cpp (4:5.2.1-16ubuntu2) over (4:5.2.1-3ubuntu1) ... Preparing to unpack .../dpkg-dev_1.18.3ubuntu1_all.deb ... Unpacking dpkg-dev (1.18.3ubuntu1) over (1.18.2ubuntu5) ... Preparing to unpack .../libdpkg-perl_1.18.3ubuntu1_all.deb ... Unpacking libdpkg-perl (1.18.3ubuntu1) over (1.18.2ubuntu5) ... Preparing to unpack .../gcc_4%3a5.2.1-16ubuntu2_arm64.deb ... Removing old gcc doc directory. Unpacking gcc (4:5.2.1-16ubuntu2) over (4:5.2.1-3ubuntu1) ... Preparing to unpack .../g++_4%3a5.2.1-16ubuntu2_arm64.deb ... Unpacking g++ (4:5.2.1-16ubuntu2) over (4:5.2.1-3ubuntu1) ... Preparing to unpack .../pkg-create-dbgsym_0.70_all.deb ... Unpacking pkg-create-dbgsym (0.70) over (0.69) ... Preparing to unpack .../pkgbinarymangler_123_all.deb ... Unpacking pkgbinarymangler (123) over (122) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libc-dev-bin (2.21-0ubuntu5) ... Setting up linux-libc-dev:arm64 (4.3.0-1.10) ... Setting up libc6-dev:arm64 (2.21-0ubuntu5) ... Setting up libgomp1:arm64 (5.2.1-27ubuntu1) ... Setting up libitm1:arm64 (5.2.1-27ubuntu1) ... Setting up libatomic1:arm64 (5.2.1-27ubuntu1) ... Setting up libasan2:arm64 (5.2.1-27ubuntu1) ... Setting up libubsan0:arm64 (5.2.1-27ubuntu1) ... Setting up libgmp10:arm64 (2:6.1.0+dfsg-2) ... Setting up libisl15:arm64 (0.15-3) ... Setting up cpp-5 (5.2.1-27ubuntu1) ... Setting up libcc1-0:arm64 (5.2.1-27ubuntu1) ... Setting up binutils (2.25.90.20151125-2ubuntu1) ... Setting up libgcc-5-dev:arm64 (5.2.1-27ubuntu1) ... Setting up gcc-5 (5.2.1-27ubuntu1) ... Setting up libstdc++-5-dev:arm64 (5.2.1-27ubuntu1) ... Setting up g++-5 (5.2.1-27ubuntu1) ... Setting up libprocps4:arm64 (2:3.3.10-4ubuntu1) ... Setting up procps (2:3.3.10-4ubuntu1) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up udev (228-2ubuntu1) ... Installing new version of config file /etc/init.d/udev ... addgroup: The group `input' already exists as a system group. Exiting. Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up apt (1.1.3) ... Installing new version of config file /etc/apt/apt.conf.d/01-vendor-ubuntu ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... usermod: no changes Setting up libtasn1-6:arm64 (4.7-2) ... Setting up libgnutls-deb0-28:arm64 (3.3.18-1ubuntu1) ... Setting up libpng12-0:arm64 (1.2.54-1) ... Setting up libsqlite3-0:arm64 (3.9.2-1) ... Setting up libssl1.0.0:arm64 (1.0.2e-1ubuntu1) ... Setting up libkrb5support0:arm64 (1.13.2+dfsg-4) ... Setting up libk5crypto3:arm64 (1.13.2+dfsg-4) ... Setting up libkrb5-3:arm64 (1.13.2+dfsg-4) ... Setting up libgssapi-krb5-2:arm64 (1.13.2+dfsg-4) ... Setting up libidn11:arm64 (1.32-3ubuntu1) ... Setting up libcurl3-gnutls:arm64 (7.45.0-1ubuntu1) ... Setting up apt-transport-https (1.1.3) ... Setting up libdbus-1-3:arm64 (1.10.6-1ubuntu1) ... Setting up openssl (1.0.2e-1ubuntu1) ... Setting up advancecomp (1.20-1) ... Setting up cpp (4:5.2.1-16ubuntu2) ... Setting up libdpkg-perl (1.18.3ubuntu1) ... Setting up dpkg-dev (1.18.3ubuntu1) ... Setting up gcc (4:5.2.1-16ubuntu2) ... Setting up g++ (4:5.2.1-16ubuntu2) ... Setting up pkg-create-dbgsym (0.70) ... Setting up pkgbinarymangler (123) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Processing triggers for systemd (228-2ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-8393487', 'arm64', 'xenial-proposed', '-c', 'chroot:autobuild', '--arch=arm64', '--dist=xenial-proposed', '--purge=never', '--nolog', 'mira_4.9.5-2.dsc'] Initiating build PACKAGEBUILD-8393487 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.13.0-65-generic #105-Ubuntu SMP Mon Sep 21 19:10:52 UTC 2015 aarch64 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on templar.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ mira 4.9.5-2 (arm64) 04 Dec 2015 20:18 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: mira Version: 4.9.5-2 Source Version: 4.9.5-2 Distribution: xenial-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/mira-sXIE1Y/mira-4.9.5' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/mira-sXIE1Y' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-8393487/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── mira_4.9.5-2.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-m3DBs8/apt_archive/sbuild-build-depends-core-dummy.deb'. Get:1 file:/«BUILDDIR»/resolver-m3DBs8/apt_archive ./ InRelease Ign:1 file:/«BUILDDIR»/resolver-m3DBs8/apt_archive ./ InRelease Get:2 file:/«BUILDDIR»/resolver-m3DBs8/apt_archive ./ Release [2119 B] Get:2 file:/«BUILDDIR»/resolver-m3DBs8/apt_archive ./ Release [2119 B] Get:3 file:/«BUILDDIR»/resolver-m3DBs8/apt_archive ./ Release.gpg Ign:3 file:/«BUILDDIR»/resolver-m3DBs8/apt_archive ./ Release.gpg Get:4 file:/«BUILDDIR»/resolver-m3DBs8/apt_archive ./ Sources [208 B] Get:5 file:/«BUILDDIR»/resolver-m3DBs8/apt_archive ./ Packages [526 B] Ign:4 file:/«BUILDDIR»/resolver-m3DBs8/apt_archive ./ Sources Ign:5 file:/«BUILDDIR»/resolver-m3DBs8/apt_archive ./ Packages Get:4 file:/«BUILDDIR»/resolver-m3DBs8/apt_archive ./ Sources [208 B] Get:5 file:/«BUILDDIR»/resolver-m3DBs8/apt_archive ./ Packages [526 B] Reading package lists... W: The repository 'file:/«BUILDDIR»/resolver-m3DBs8/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 udev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/770 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 file:/«BUILDDIR»/resolver-m3DBs8/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11594 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dblatex, dh-autoreconf, autoconf-archive, docbook-xsl, libboost-all-dev, libbz2-dev, libexpat1-dev, perl, flex, vim-common, zlib1g-dev Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dblatex, dh-autoreconf, autoconf-archive, docbook-xsl, libboost-all-dev, libbz2-dev, libexpat1-dev, perl, flex, vim-common, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-mira-dummy' in '/«BUILDDIR»/resolver-gMsctK/apt_archive/sbuild-build-depends-mira-dummy.deb'. Get:1 file:/«BUILDDIR»/resolver-gMsctK/apt_archive ./ InRelease Ign:1 file:/«BUILDDIR»/resolver-gMsctK/apt_archive ./ InRelease Get:2 file:/«BUILDDIR»/resolver-gMsctK/apt_archive ./ Release [2119 B] Get:2 file:/«BUILDDIR»/resolver-gMsctK/apt_archive ./ Release [2119 B] Get:3 file:/«BUILDDIR»/resolver-gMsctK/apt_archive ./ Release.gpg Ign:3 file:/«BUILDDIR»/resolver-gMsctK/apt_archive ./ Release.gpg Get:4 file:/«BUILDDIR»/resolver-gMsctK/apt_archive ./ Sources [508 B] Get:5 file:/«BUILDDIR»/resolver-gMsctK/apt_archive ./ Packages [760 B] Ign:4 file:/«BUILDDIR»/resolver-gMsctK/apt_archive ./ Sources Ign:5 file:/«BUILDDIR»/resolver-gMsctK/apt_archive ./ Packages Get:4 file:/«BUILDDIR»/resolver-gMsctK/apt_archive ./ Sources [508 B] Get:5 file:/«BUILDDIR»/resolver-gMsctK/apt_archive ./ Packages [760 B] Reading package lists... W: The repository 'file:/«BUILDDIR»/resolver-gMsctK/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install mira build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 udev Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bsdmainutils dblatex debhelper dh-autoreconf dh-strip-nondeterminism docbook-xml docbook-xsl file flex fontconfig-config fonts-dejavu-core gettext gettext-base groff-base icu-devtools intltool-debian libapt-inst2.0 libarchive-zip-perl libasprintf0v5 libavahi-client3 libavahi-common-data libavahi-common3 libboost-all-dev libboost-atomic-dev libboost-atomic1.58-dev libboost-atomic1.58.0 libboost-chrono-dev libboost-chrono1.58-dev libboost-chrono1.58.0 libboost-context-dev libboost-context1.58-dev libboost-context1.58.0 libboost-coroutine-dev libboost-coroutine1.58-dev libboost-date-time-dev libboost-date-time1.58-dev libboost-date-time1.58.0 libboost-dev libboost-exception-dev libboost-exception1.58-dev libboost-filesystem-dev libboost-filesystem1.58-dev libboost-filesystem1.58.0 libboost-graph-dev libboost-graph-parallel-dev libboost-graph-parallel1.58-dev libboost-graph-parallel1.58.0 libboost-graph1.58-dev libboost-graph1.58.0 libboost-iostreams-dev libboost-iostreams1.58-dev libboost-iostreams1.58.0 libboost-locale-dev libboost-locale1.58-dev libboost-locale1.58.0 libboost-log-dev libboost-log1.58-dev libboost-log1.58.0 libboost-math-dev libboost-math1.58-dev libboost-math1.58.0 libboost-mpi-dev libboost-mpi-python-dev libboost-mpi-python1.58-dev libboost-mpi-python1.58.0 libboost-mpi1.58-dev libboost-mpi1.58.0 libboost-program-options-dev libboost-program-options1.58-dev libboost-program-options1.58.0 libboost-python-dev libboost-python1.58-dev libboost-python1.58.0 libboost-random-dev libboost-random1.58-dev libboost-random1.58.0 libboost-regex-dev libboost-regex1.58-dev libboost-regex1.58.0 libboost-serialization-dev libboost-serialization1.58-dev libboost-serialization1.58.0 libboost-signals-dev libboost-signals1.58-dev libboost-signals1.58.0 libboost-system-dev libboost-system1.58-dev libboost-system1.58.0 libboost-test-dev libboost-test1.58-dev libboost-test1.58.0 libboost-thread-dev libboost-thread1.58-dev libboost-thread1.58.0 libboost-timer-dev libboost-timer1.58-dev libboost-timer1.58.0 libboost-tools-dev libboost-wave-dev libboost-wave1.58-dev libboost-wave1.58.0 libboost1.58-dev libboost1.58-tools-dev libbz2-dev libcroco3 libcups2 libcupsfilters1 libcupsimage2 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfl-dev libfontconfig1 libfreetype6 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libharfbuzz-icu0 libharfbuzz0b libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libice6 libicu-dev libicu55 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libkpathsea6 liblcms2-2 libltdl-dev libltdl7 libmagic1 libnuma-dev libnuma1 libopenmpi-dev libopenmpi1.6 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpoppler57 libpotrace0 libptexenc1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsm6 libsynctex1 libtexlua52 libtiff5 libtimedate-perl libtool libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxslt1.1 libxt6 libzzip-0-13 m4 man-db mime-support mpi-default-bin mpi-default-dev openmpi-bin openmpi-common po-debconf poppler-data preview-latex-style python python-apt python-apt-common python-dev python-minimal python2.7 python2.7-dev python2.7-minimal sgml-base sgml-data t1utils tex-common texlive texlive-base texlive-bibtex-extra texlive-binaries texlive-extra-utils texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-math-extra texlive-pictures ucf vim-common x11-common xdg-utils xml-core xsltproc zlib1g-dev Suggested packages: gnu-standards autoconf-doc wamerican | wordlist whois vacation docbook ghostscript graphicsmagick-imagemagick-compat | imagemagick inkscape latex-cjk-all lmodern opensp pdf-viewer texlive-lang-all texlive-lang-cyrillic texlive-xetex transfig xindy dh-make docbook-dsssl docbook-defguide dbtoepub docbook-xsl-doc-html | docbook-xsl-doc-pdf | docbook-xsl-doc-text | docbook-xsl-doc docbook-xsl-saxon fop libsaxon-java libxalan2-java libxslthl-java xalan bison gettext-doc groff libboost-doc graphviz python3 libboost1.58-doc gccxml libmpfrc++-dev libntl-dev doxygen default-jdk cups-common fonts-droid texlive-lang-cjk libhwloc-contrib-plugins icu-doc liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser gfortran libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk python-apt-dbg python-apt-doc python2.7-doc binfmt-support sgml-base-doc perlsgml w3-recs libxml2-utils gv | postscript-viewer xpdf-reader | pdf-viewer perl-tk latexmk purifyeps chktex fragmaster latexdiff dvidvi lacheck dvipng python-pygments libspreadsheet-parseexcel-perl libfile-which-perl texlive-pstricks dot2tex libtcltk-ruby prerex gvfs-bin Recommended packages: libxml2-utils curl | wget | lynx-cur libasprintf-dev libgettextpo-dev bzip2-doc libglib2.0-data shared-mime-info xdg-user-dirs libhwloc-plugins libmail-sendmail-perl lsb-release iso-codes lmodern ruby wish ruby | ruby-interpreter ghostscript libfile-homedir-perl libyaml-tiny-perl tex-gyre texlive-fonts-recommended-doc tipa texlive-latex-base-doc texlive-latex-extra-doc prosper texlive-latex-recommended-doc tk texlive-pictures-doc vim | vim-gnome | vim-gtk | vim-athena | vim-nox | vim-tiny libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bsdmainutils dblatex debhelper dh-autoreconf dh-strip-nondeterminism docbook-xml docbook-xsl file flex fontconfig-config fonts-dejavu-core gettext gettext-base groff-base icu-devtools intltool-debian libapt-inst2.0 libarchive-zip-perl libasprintf0v5 libavahi-client3 libavahi-common-data libavahi-common3 libboost-all-dev libboost-atomic-dev libboost-atomic1.58-dev libboost-atomic1.58.0 libboost-chrono-dev libboost-chrono1.58-dev libboost-chrono1.58.0 libboost-context-dev libboost-context1.58-dev libboost-context1.58.0 libboost-coroutine-dev libboost-coroutine1.58-dev libboost-date-time-dev libboost-date-time1.58-dev libboost-date-time1.58.0 libboost-dev libboost-exception-dev libboost-exception1.58-dev libboost-filesystem-dev libboost-filesystem1.58-dev libboost-filesystem1.58.0 libboost-graph-dev libboost-graph-parallel-dev libboost-graph-parallel1.58-dev libboost-graph-parallel1.58.0 libboost-graph1.58-dev libboost-graph1.58.0 libboost-iostreams-dev libboost-iostreams1.58-dev libboost-iostreams1.58.0 libboost-locale-dev libboost-locale1.58-dev libboost-locale1.58.0 libboost-log-dev libboost-log1.58-dev libboost-log1.58.0 libboost-math-dev libboost-math1.58-dev libboost-math1.58.0 libboost-mpi-dev libboost-mpi-python-dev libboost-mpi-python1.58-dev libboost-mpi-python1.58.0 libboost-mpi1.58-dev libboost-mpi1.58.0 libboost-program-options-dev libboost-program-options1.58-dev libboost-program-options1.58.0 libboost-python-dev libboost-python1.58-dev libboost-python1.58.0 libboost-random-dev libboost-random1.58-dev libboost-random1.58.0 libboost-regex-dev libboost-regex1.58-dev libboost-regex1.58.0 libboost-serialization-dev libboost-serialization1.58-dev libboost-serialization1.58.0 libboost-signals-dev libboost-signals1.58-dev libboost-signals1.58.0 libboost-system-dev libboost-system1.58-dev libboost-system1.58.0 libboost-test-dev libboost-test1.58-dev libboost-test1.58.0 libboost-thread-dev libboost-thread1.58-dev libboost-thread1.58.0 libboost-timer-dev libboost-timer1.58-dev libboost-timer1.58.0 libboost-tools-dev libboost-wave-dev libboost-wave1.58-dev libboost-wave1.58.0 libboost1.58-dev libboost1.58-tools-dev libbz2-dev libcroco3 libcups2 libcupsfilters1 libcupsimage2 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfl-dev libfontconfig1 libfreetype6 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libharfbuzz-icu0 libharfbuzz0b libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libice6 libicu-dev libicu55 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libkpathsea6 liblcms2-2 libltdl-dev libltdl7 libmagic1 libnuma-dev libnuma1 libopenmpi-dev libopenmpi1.6 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpoppler57 libpotrace0 libptexenc1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsm6 libsynctex1 libtexlua52 libtiff5 libtimedate-perl libtool libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxslt1.1 libxt6 libzzip-0-13 m4 man-db mime-support mpi-default-bin mpi-default-dev openmpi-bin openmpi-common po-debconf poppler-data preview-latex-style python python-apt python-apt-common python-dev python-minimal python2.7 python2.7-dev python2.7-minimal sbuild-build-depends-mira-dummy sgml-base sgml-data t1utils tex-common texlive texlive-base texlive-bibtex-extra texlive-binaries texlive-extra-utils texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-math-extra texlive-pictures ucf vim-common x11-common xdg-utils xml-core xsltproc zlib1g-dev 0 upgraded, 222 newly installed, 0 to remove and 0 not upgraded. Need to get 180 MB/180 MB of archives. After this operation, 724 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-mira-dummy Authentication warning overridden. Get:1 file:/«BUILDDIR»/resolver-gMsctK/apt_archive ./ sbuild-build-depends-mira-dummy 0.invalid.0 [1002 B] Get:2 http://ftpmaster.internal/ubuntu xenial/main arm64 libasprintf0v5 arm64 0.19.4-1ubuntu3 [6680 B] Get:3 http://ftpmaster.internal/ubuntu xenial/main arm64 libxau6 arm64 1:1.0.8-1 [7590 B] Get:4 http://ftpmaster.internal/ubuntu xenial/main arm64 libxdmcp6 arm64 1:1.1.2-1.1 [10.1 kB] Get:5 http://ftpmaster.internal/ubuntu xenial/main arm64 libxcb1 arm64 1.11.1-1ubuntu1 [33.3 kB] Get:6 http://ftpmaster.internal/ubuntu xenial/main arm64 libx11-data all 2:1.6.3-1ubuntu2 [113 kB] Get:7 http://ftpmaster.internal/ubuntu xenial/main arm64 libx11-6 arm64 2:1.6.3-1ubuntu2 [512 kB] Get:8 http://ftpmaster.internal/ubuntu xenial/main arm64 libxext6 arm64 2:1.3.3-1 [25.4 kB] Get:9 http://ftpmaster.internal/ubuntu xenial/main arm64 groff-base arm64 1.22.3-4 [1119 kB] Get:10 http://ftpmaster.internal/ubuntu xenial/main arm64 bsdmainutils arm64 9.0.6ubuntu1 [171 kB] Get:11 http://ftpmaster.internal/ubuntu xenial/main arm64 libpipeline1 arm64 1.4.1-1 [21.9 kB] Get:12 http://ftpmaster.internal/ubuntu xenial/main arm64 man-db arm64 2.7.5-1 [832 kB] Get:13 http://ftpmaster.internal/ubuntu xenial/main arm64 sgml-base all 1.26+nmu4ubuntu1 [12.5 kB] Get:14 http://ftpmaster.internal/ubuntu xenial/main arm64 autoconf-archive all 20150224-2.1 [629 kB] Get:15 http://ftpmaster.internal/ubuntu xenial/main arm64 libsigsegv2 arm64 2.10-4 [13.3 kB] Get:16 http://ftpmaster.internal/ubuntu xenial/main arm64 m4 arm64 1.4.17-4 [182 kB] Get:17 http://ftpmaster.internal/ubuntu xenial/main arm64 libfl-dev arm64 2.5.39-8 [12.9 kB] Get:18 http://ftpmaster.internal/ubuntu xenial/main arm64 flex arm64 2.5.39-8 [275 kB] Get:19 http://ftpmaster.internal/ubuntu xenial/main arm64 fonts-dejavu-core all 2.35-1 [1039 kB] Get:20 http://ftpmaster.internal/ubuntu xenial/main arm64 ucf all 3.0031 [52.7 kB] Get:21 http://ftpmaster.internal/ubuntu xenial/main arm64 fontconfig-config all 2.11.1-0ubuntu6 [48.7 kB] Get:22 http://ftpmaster.internal/ubuntu xenial/main arm64 libexpat1 arm64 2.1.0-7 [58.8 kB] Get:23 http://ftpmaster.internal/ubuntu xenial/main arm64 libfreetype6 arm64 2.5.2-4ubuntu2 [264 kB] Get:24 http://ftpmaster.internal/ubuntu xenial/main arm64 libfontconfig1 arm64 2.11.1-0ubuntu6 [111 kB] Get:25 http://ftpmaster.internal/ubuntu xenial/main arm64 libgraphite2-3 arm64 1.2.4-3ubuntu1 [45.6 kB] Get:26 http://ftpmaster.internal/ubuntu xenial/main arm64 x11-common all 1:7.7+12ubuntu1 [22.4 kB] Get:27 http://ftpmaster.internal/ubuntu xenial/main arm64 libice6 arm64 2:1.0.9-1 [32.8 kB] Get:28 http://ftpmaster.internal/ubuntu xenial/main arm64 libjpeg-turbo8 arm64 1.3.0-0ubuntu2 [80.2 kB] Get:29 http://ftpmaster.internal/ubuntu xenial/main arm64 liblcms2-2 arm64 2.6-3ubuntu2 [113 kB] Get:30 http://ftpmaster.internal/ubuntu xenial/main arm64 libltdl7 arm64 2.4.2-1.11 [32.4 kB] Get:31 http://ftpmaster.internal/ubuntu xenial/main arm64 libsm6 arm64 2:1.2.2-1 [13.7 kB] Get:32 http://ftpmaster.internal/ubuntu xenial/main arm64 libunistring0 arm64 0.9.3-5.2ubuntu1 [251 kB] Get:33 http://ftpmaster.internal/ubuntu xenial/main arm64 libxpm4 arm64 1:3.5.11-1 [28.2 kB] Get:34 http://ftpmaster.internal/ubuntu xenial/main arm64 libzzip-0-13 arm64 0.13.62-3 [22.5 kB] Get:35 http://ftpmaster.internal/ubuntu xenial/main arm64 poppler-data all 0.4.7-5 [1493 kB] Get:36 http://ftpmaster.internal/ubuntu xenial/main arm64 libpython2.7-minimal arm64 2.7.10-4ubuntu2 [336 kB] Get:37 http://ftpmaster.internal/ubuntu xenial/main arm64 python2.7-minimal arm64 2.7.10-4ubuntu2 [918 kB] Get:38 http://ftpmaster.internal/ubuntu xenial/main arm64 python-minimal arm64 2.7.9-1 [28.3 kB] Get:39 http://ftpmaster.internal/ubuntu xenial/main arm64 mime-support all 3.59ubuntu1 [31.0 kB] Get:40 http://ftpmaster.internal/ubuntu xenial/main arm64 libpython2.7-stdlib arm64 2.7.10-4ubuntu2 [1727 kB] Get:41 http://ftpmaster.internal/ubuntu xenial/main arm64 python2.7 arm64 2.7.10-4ubuntu2 [210 kB] Get:42 http://ftpmaster.internal/ubuntu xenial/main arm64 libpython-stdlib arm64 2.7.9-1 [7760 B] Get:43 http://ftpmaster.internal/ubuntu xenial/main arm64 python arm64 2.7.9-1 [137 kB] Get:44 http://ftpmaster.internal/ubuntu xenial/main arm64 libnuma1 arm64 2.0.10-1ubuntu6 [17.9 kB] Get:45 http://ftpmaster.internal/ubuntu xenial/universe arm64 libhwloc5 arm64 1.11.1-1 [68.2 kB] Get:46 http://ftpmaster.internal/ubuntu xenial/main arm64 libjbig0 arm64 2.1-3.1 [23.8 kB] Get:47 http://ftpmaster.internal/ubuntu xenial/main arm64 libmagic1 arm64 1:5.25-2ubuntu1 [209 kB] Get:48 http://ftpmaster.internal/ubuntu xenial/main arm64 file arm64 1:5.25-2ubuntu1 [21.2 kB] Get:49 http://ftpmaster.internal/ubuntu xenial-proposed/main arm64 libapt-inst2.0 arm64 1.1.3 [54.2 kB] Get:50 http://ftpmaster.internal/ubuntu xenial/main arm64 vim-common arm64 2:7.4.826-1ubuntu1 [103 kB] Get:51 http://ftpmaster.internal/ubuntu xenial/main arm64 gettext-base arm64 0.19.4-1ubuntu3 [45.8 kB] Get:52 http://ftpmaster.internal/ubuntu xenial/main arm64 libglib2.0-0 arm64 2.47.3-3 [922 kB] Get:53 http://ftpmaster.internal/ubuntu xenial/main arm64 libicu55 arm64 55.1-6ubuntu1 [7505 kB] Get:54 http://ftpmaster.internal/ubuntu xenial/main arm64 libxml2 arm64 2.9.2+zdfsg1-4ubuntu1 [563 kB] Get:55 http://ftpmaster.internal/ubuntu xenial-proposed/main arm64 python-apt-common all 1.1.0~beta1 [18.3 kB] Get:56 http://ftpmaster.internal/ubuntu xenial/main arm64 xml-core all 0.13+nmu2 [23.3 kB] Get:57 http://ftpmaster.internal/ubuntu xenial/main arm64 autoconf all 2.69-9 [321 kB] Get:58 http://ftpmaster.internal/ubuntu xenial/main arm64 autotools-dev all 20150820.1 [39.8 kB] Get:59 http://ftpmaster.internal/ubuntu xenial/main arm64 automake all 1:1.15-1ubuntu1 [511 kB] Get:60 http://ftpmaster.internal/ubuntu xenial/main arm64 autopoint all 0.19.4-1ubuntu3 [390 kB] Get:61 http://ftpmaster.internal/ubuntu xenial/main arm64 sgml-data all 2.0.10 [173 kB] Get:62 http://ftpmaster.internal/ubuntu xenial/main arm64 docbook-xml all 4.5-7.3 [74.4 kB] Get:63 http://ftpmaster.internal/ubuntu xenial-proposed/main arm64 python-apt arm64 1.1.0~beta1 [132 kB] Get:64 http://ftpmaster.internal/ubuntu xenial/main arm64 tex-common all 6.04 [545 kB] Get:65 http://ftpmaster.internal/ubuntu xenial-proposed/main arm64 libkpathsea6 arm64 2015.20150524.37493-7build2 [48.3 kB] Get:66 http://ftpmaster.internal/ubuntu xenial-proposed/main arm64 libptexenc1 arm64 2015.20150524.37493-7build2 [32.8 kB] Get:67 http://ftpmaster.internal/ubuntu xenial-proposed/main arm64 libsynctex1 arm64 2015.20150524.37493-7build2 [37.2 kB] Get:68 http://ftpmaster.internal/ubuntu xenial-proposed/main arm64 libtexlua52 arm64 2015.20150524.37493-7build2 [74.7 kB] Get:69 http://ftpmaster.internal/ubuntu xenial/main arm64 t1utils arm64 1.38-4 [48.2 kB] Get:70 http://ftpmaster.internal/ubuntu xenial/main arm64 libavahi-common-data arm64 0.6.32~rc+dfsg-1ubuntu2 [21.7 kB] Get:71 http://ftpmaster.internal/ubuntu xenial/main arm64 libavahi-common3 arm64 0.6.32~rc+dfsg-1ubuntu2 [18.0 kB] Get:72 http://ftpmaster.internal/ubuntu xenial/main arm64 libavahi-client3 arm64 0.6.32~rc+dfsg-1ubuntu2 [21.0 kB] Get:73 http://ftpmaster.internal/ubuntu xenial-proposed/main arm64 libcups2 arm64 2.1.2-1 [164 kB] Get:74 http://ftpmaster.internal/ubuntu xenial/main arm64 libjpeg8 arm64 8c-2ubuntu8 [2198 B] Get:75 http://ftpmaster.internal/ubuntu xenial/main arm64 libtiff5 arm64 4.0.5-1 [122 kB] Get:76 http://ftpmaster.internal/ubuntu xenial-proposed/main arm64 libcupsfilters1 arm64 1.2.0-1 [67.5 kB] Get:77 http://ftpmaster.internal/ubuntu xenial-proposed/main arm64 libcupsimage2 arm64 2.1.2-1 [14.4 kB] Get:78 http://ftpmaster.internal/ubuntu xenial/main arm64 libijs-0.35 arm64 0.35-11 [14.2 kB] Get:79 http://ftpmaster.internal/ubuntu xenial/main arm64 libjbig2dec0 arm64 0.12+20150918-1 [48.7 kB] Get:80 http://ftpmaster.internal/ubuntu xenial/main arm64 libpaper1 arm64 1.1.24+nmu4ubuntu1 [13.1 kB] Get:81 http://ftpmaster.internal/ubuntu xenial/main arm64 libgs9-common all 9.16~dfsg~0-0ubuntu3 [2938 kB] Get:82 http://ftpmaster.internal/ubuntu xenial/main arm64 libgs9 arm64 9.16~dfsg~0-0ubuntu3 [1727 kB] Get:83 http://ftpmaster.internal/ubuntu xenial/main arm64 libharfbuzz0b arm64 1.0.1-1build2 [119 kB] Get:84 http://ftpmaster.internal/ubuntu xenial/main arm64 libharfbuzz-icu0 arm64 1.0.1-1build2 [5030 B] Get:85 http://ftpmaster.internal/ubuntu xenial/main arm64 libpixman-1-0 arm64 0.33.4-1 [116 kB] Get:86 http://ftpmaster.internal/ubuntu xenial-proposed/main arm64 libpoppler57 arm64 0.38.0-0ubuntu1 [628 kB] Get:87 http://ftpmaster.internal/ubuntu xenial/main arm64 libpotrace0 arm64 1.12-1 [15.4 kB] Get:88 http://ftpmaster.internal/ubuntu xenial/main arm64 libxt6 arm64 1:1.1.5-0ubuntu1 [128 kB] Get:89 http://ftpmaster.internal/ubuntu xenial/main arm64 libxmu6 arm64 2:1.1.2-1ubuntu1 [38.7 kB] Get:90 http://ftpmaster.internal/ubuntu xenial/main arm64 libxaw7 arm64 2:1.0.13-1 [137 kB] Get:91 http://ftpmaster.internal/ubuntu xenial/main arm64 libxi6 arm64 2:1.7.5-1 [24.8 kB] Get:92 http://ftpmaster.internal/ubuntu xenial-proposed/main arm64 texlive-binaries arm64 2015.20150524.37493-7build2 [6415 kB] Get:93 http://ftpmaster.internal/ubuntu xenial/main arm64 libpaper-utils arm64 1.1.24+nmu4ubuntu1 [8134 B] Get:94 http://ftpmaster.internal/ubuntu xenial/main arm64 xdg-utils all 1.1.0~rc3+git20150907-1ubuntu3 [58.1 kB] Get:95 http://ftpmaster.internal/ubuntu xenial/main arm64 texlive-base all 2015.20150625-1ubuntu1 [18.1 MB] Get:96 http://ftpmaster.internal/ubuntu xenial/main arm64 texlive-latex-base all 2015.20150625-1ubuntu1 [968 kB] Get:97 http://ftpmaster.internal/ubuntu xenial/main arm64 texlive-fonts-recommended all 2015.20150625-1ubuntu1 [5704 kB] Get:98 http://ftpmaster.internal/ubuntu xenial/main arm64 texlive-latex-recommended all 2015.20150625-1ubuntu1 [10.2 MB] Get:99 http://ftpmaster.internal/ubuntu xenial/main arm64 texlive all 2015.20150625-1ubuntu1 [14.3 kB] Get:100 http://ftpmaster.internal/ubuntu xenial/main arm64 texlive-bibtex-extra all 2015.20151116-1 [35.5 MB] Get:101 http://ftpmaster.internal/ubuntu xenial/main arm64 texlive-extra-utils all 2015.20151116-1 [11.9 MB] Get:102 http://ftpmaster.internal/ubuntu xenial/main arm64 preview-latex-style all 11.88-1.1ubuntu1 [184 kB] Get:103 http://ftpmaster.internal/ubuntu xenial/main arm64 texlive-pictures all 2015.20150625-1ubuntu1 [3089 kB] Get:104 http://ftpmaster.internal/ubuntu xenial/main arm64 texlive-latex-extra all 2015.20151116-1 [10.8 MB] Get:105 http://ftpmaster.internal/ubuntu xenial/main arm64 texlive-math-extra all 2015.20151116-1 [15.4 MB] Get:106 http://ftpmaster.internal/ubuntu xenial/main arm64 libxslt1.1 arm64 1.1.28-2.1 [123 kB] Get:107 http://ftpmaster.internal/ubuntu xenial/main arm64 xsltproc arm64 1.1.28-2.1 [13.1 kB] Get:108 http://ftpmaster.internal/ubuntu xenial/main arm64 dblatex all 0.3.7-1 [1452 kB] Get:109 http://ftpmaster.internal/ubuntu xenial/main arm64 libcroco3 arm64 0.6.9-1 [66.7 kB] Get:110 http://ftpmaster.internal/ubuntu xenial/main arm64 gettext arm64 0.19.4-1ubuntu3 [794 kB] Get:111 http://ftpmaster.internal/ubuntu xenial/main arm64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:112 http://ftpmaster.internal/ubuntu xenial/main arm64 po-debconf all 1.0.18 [234 kB] Get:113 http://ftpmaster.internal/ubuntu xenial/main arm64 libarchive-zip-perl all 1.53-1 [87.0 kB] Get:114 http://ftpmaster.internal/ubuntu xenial/main arm64 libfile-stripnondeterminism-perl all 0.014-1 [10.1 kB] Get:115 http://ftpmaster.internal/ubuntu xenial/main arm64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:116 http://ftpmaster.internal/ubuntu xenial/main arm64 dh-strip-nondeterminism all 0.014-1 [5596 B] Get:117 http://ftpmaster.internal/ubuntu xenial/main arm64 debhelper all 9.20151126ubuntu1 [741 kB] Get:118 http://ftpmaster.internal/ubuntu xenial/main arm64 libtool all 2.4.2-1.11 [180 kB] Get:119 http://ftpmaster.internal/ubuntu xenial/main arm64 dh-autoreconf all 10 [15.3 kB] Get:120 http://ftpmaster.internal/ubuntu xenial/main arm64 docbook-xsl all 1.78.1+dfsg-1 [2146 kB] Get:121 http://ftpmaster.internal/ubuntu xenial/main arm64 icu-devtools arm64 55.1-6ubuntu1 [155 kB] Get:122 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [6241 kB] Get:123 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-dev arm64 1.58.0.0ubuntu1 [3138 B] Get:124 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost1.58-tools-dev arm64 1.58.0+dfsg-3.1ubuntu1 [1070 kB] Get:125 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-tools-dev arm64 1.58.0.0ubuntu1 [2972 B] Get:126 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-atomic1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [7174 B] Get:127 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-atomic1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [5070 B] Get:128 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-atomic-dev arm64 1.58.0.0ubuntu1 [3106 B] Get:129 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-system1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [9124 B] Get:130 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-chrono1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [12.7 kB] Get:131 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-chrono1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [15.6 kB] Get:132 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-chrono-dev arm64 1.58.0.0ubuntu1 [3430 B] Get:133 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-context1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [5166 B] Get:134 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-context1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [4222 B] Get:135 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-context-dev arm64 1.58.0.0ubuntu1 [2996 B] Get:136 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-coroutine1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [4288 B] Get:137 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-coroutine-dev arm64 1.58.0.0ubuntu1 [3076 B] Get:138 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-date-time1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [19.5 kB] Get:139 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-serialization1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [105 kB] Get:140 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-serialization1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [138 kB] Get:141 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-date-time1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [26.8 kB] Get:142 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-date-time-dev arm64 1.58.0.0ubuntu1 [2812 B] Get:143 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-exception1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [4470 B] Get:144 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-exception-dev arm64 1.58.0.0ubuntu1 [2796 B] Get:145 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-filesystem1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [34.8 kB] Get:146 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-system1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [9046 B] Get:147 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-filesystem1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [45.2 kB] Get:148 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-filesystem-dev arm64 1.58.0.0ubuntu1 [2832 B] Get:149 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-regex1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [229 kB] Get:150 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-graph1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [85.5 kB] Get:151 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-test1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [161 kB] Get:152 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-test1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [216 kB] Get:153 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-graph1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [97.0 kB] Get:154 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-graph-dev arm64 1.58.0.0ubuntu1 [2896 B] Get:155 http://ftpmaster.internal/ubuntu xenial/main arm64 libibverbs1 arm64 1.1.8-1.1ubuntu1 [21.5 kB] Get:156 http://ftpmaster.internal/ubuntu xenial/universe arm64 libopenmpi1.6 arm64 1.6.5-11 [1147 kB] Get:157 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-mpi1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [44.8 kB] Get:158 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-graph-parallel1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [67.2 kB] Get:159 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-graph-parallel1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [74.1 kB] Get:160 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-graph-parallel-dev arm64 1.58.0.0ubuntu1 [2936 B] Get:161 http://ftpmaster.internal/ubuntu xenial/main arm64 libicu-dev arm64 55.1-6ubuntu1 [8444 kB] Get:162 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-regex1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [282 kB] Get:163 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-iostreams1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [27.1 kB] Get:164 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-iostreams1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [36.1 kB] Get:165 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-iostreams-dev arm64 1.58.0.0ubuntu1 [2790 B] Get:166 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-thread1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [42.5 kB] Get:167 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-locale1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [213 kB] Get:168 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-locale1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [311 kB] Get:169 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-locale-dev arm64 1.58.0.0ubuntu1 [3134 B] Get:170 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-log1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [370 kB] Get:171 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-thread1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [45.9 kB] Get:172 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-log1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [491 kB] Get:173 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-log-dev arm64 1.58.0.0ubuntu1 [2992 B] Get:174 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-math1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [234 kB] Get:175 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-math1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [541 kB] Get:176 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-math-dev arm64 1.58.0.0ubuntu1 [2998 B] Get:177 http://ftpmaster.internal/ubuntu xenial/universe arm64 openmpi-common all 1.6.5-11 [101 kB] Get:178 http://ftpmaster.internal/ubuntu xenial/main arm64 libibverbs-dev arm64 1.1.8-1.1ubuntu1 [75.9 kB] Get:179 http://ftpmaster.internal/ubuntu xenial/main arm64 libnuma-dev arm64 2.0.10-1ubuntu6 [30.2 kB] Get:180 http://ftpmaster.internal/ubuntu xenial/main arm64 libltdl-dev arm64 2.4.2-1.11 [156 kB] Get:181 http://ftpmaster.internal/ubuntu xenial/universe arm64 libhwloc-dev arm64 1.11.1-1 [131 kB] Get:182 http://ftpmaster.internal/ubuntu xenial/universe arm64 libopenmpi-dev arm64 1.6.5-11 [379 kB] Get:183 http://ftpmaster.internal/ubuntu xenial/universe arm64 mpi-default-dev arm64 1.0.2+nmu2 [4014 B] Get:184 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-mpi1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [142 kB] Get:185 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-mpi-dev arm64 1.58.0.0ubuntu1 [2880 B] Get:186 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-python1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [110 kB] Get:187 http://ftpmaster.internal/ubuntu xenial/universe arm64 openmpi-bin arm64 1.6.5-11 [81.4 kB] Get:188 http://ftpmaster.internal/ubuntu xenial/universe arm64 mpi-default-bin arm64 1.0.2+nmu2 [3394 B] Get:189 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-mpi-python1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [206 kB] Get:190 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-mpi-python1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [25.1 kB] Get:191 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-mpi-python-dev arm64 1.58.0.0ubuntu1 [2924 B] Get:192 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-program-options1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [122 kB] Get:193 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-program-options1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [158 kB] Get:194 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-program-options-dev arm64 1.58.0.0ubuntu1 [2822 B] Get:195 http://ftpmaster.internal/ubuntu xenial/main arm64 libpython2.7 arm64 2.7.10-4ubuntu2 [886 kB] Get:196 http://ftpmaster.internal/ubuntu xenial/main arm64 libexpat1-dev arm64 2.1.0-7 [105 kB] Get:197 http://ftpmaster.internal/ubuntu xenial/main arm64 libpython2.7-dev arm64 2.7.10-4ubuntu2 [1667 kB] Get:198 http://ftpmaster.internal/ubuntu xenial/main arm64 libpython-dev arm64 2.7.9-1 [7832 B] Get:199 http://ftpmaster.internal/ubuntu xenial/main arm64 python2.7-dev arm64 2.7.10-4ubuntu2 [270 kB] Get:200 http://ftpmaster.internal/ubuntu xenial/main arm64 python-dev arm64 2.7.9-1 [1226 B] Get:201 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-python1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [149 kB] Get:202 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-python-dev arm64 1.58.0.0ubuntu1 [3178 B] Get:203 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-random1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [11.3 kB] Get:204 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-random1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [10.9 kB] Get:205 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-random-dev arm64 1.58.0.0ubuntu1 [2806 B] Get:206 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-regex-dev arm64 1.58.0.0ubuntu1 [3056 B] Get:207 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-serialization-dev arm64 1.58.0.0ubuntu1 [3028 B] Get:208 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-signals1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [29.4 kB] Get:209 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-signals1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [33.1 kB] Get:210 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-signals-dev arm64 1.58.0.0ubuntu1 [2862 B] Get:211 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-system-dev arm64 1.58.0.0ubuntu1 [2946 B] Get:212 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-test-dev arm64 1.58.0.0ubuntu1 [2838 B] Get:213 http://ftpmaster.internal/ubuntu xenial/main arm64 libboost-thread-dev arm64 1.58.0.0ubuntu1 [2830 B] Get:214 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-timer1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [10.1 kB] Get:215 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-timer1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [10.1 kB] Get:216 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-timer-dev arm64 1.58.0.0ubuntu1 [2920 B] Get:217 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-wave1.58.0 arm64 1.58.0+dfsg-3.1ubuntu1 [171 kB] Get:218 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-wave1.58-dev arm64 1.58.0+dfsg-3.1ubuntu1 [232 kB] Get:219 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-wave-dev arm64 1.58.0.0ubuntu1 [2830 B] Get:220 http://ftpmaster.internal/ubuntu xenial/universe arm64 libboost-all-dev arm64 1.58.0.0ubuntu1 [2216 B] Get:221 http://ftpmaster.internal/ubuntu xenial/main arm64 libbz2-dev arm64 1.0.6-8 [28.0 kB] Get:222 http://ftpmaster.internal/ubuntu xenial/main arm64 zlib1g-dev arm64 1:1.2.8.dfsg-2ubuntu4 [162 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 180 MB in 55s (3241 kB/s) Selecting previously unselected package libasprintf0v5:arm64. 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Setting up libxcb1:arm64 (1.11.1-1ubuntu1) ... Setting up libx11-data (2:1.6.3-1ubuntu2) ... Setting up libx11-6:arm64 (2:1.6.3-1ubuntu2) ... Setting up libxext6:arm64 (2:1.3.3-1) ... Setting up groff-base (1.22.3-4) ... Setting up bsdmainutils (9.0.6ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:arm64 (1.4.1-1) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up sgml-base (1.26+nmu4ubuntu1) ... Setting up autoconf-archive (20150224-2.1) ... Setting up libsigsegv2:arm64 (2.10-4) ... Setting up m4 (1.4.17-4) ... Setting up libfl-dev:arm64 (2.5.39-8) ... Setting up flex (2.5.39-8) ... Setting up fonts-dejavu-core (2.35-1) ... Setting up ucf (3.0031) ... Setting up fontconfig-config (2.11.1-0ubuntu6) ... Setting up libexpat1:arm64 (2.1.0-7) ... 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Processing triggers for tex-common (6.04) ... update-language: texlive-base not installed and configured, doing nothing! texlive-base is not ready, skipping fmtutil-sys --all call Setting up texlive-base (2015.20150625-1ubuntu1) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Processing triggers for sgml-base (1.26+nmu4ubuntu1) ... Setting up docbook-xml (4.5-7.3) ... Processing triggers for tex-common (6.04) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up texlive-fonts-recommended (2015.20150625-1ubuntu1) ... Setting up texlive-latex-base (2015.20150625-1ubuntu1) ... Processing triggers for tex-common (6.04) ... Running updmap-sys. This may take some time... done. 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Setting up debhelper (9.20151126ubuntu1) ... Setting up dh-autoreconf (10) ... Setting up sbuild-build-depends-mira-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Processing triggers for systemd (228-2ubuntu1) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.13.0-65-generic arm64 (aarch64) Toolchain package versions: binutils_2.25.90.20151125-2ubuntu1 dpkg-dev_1.18.3ubuntu1 g++-5_5.2.1-27ubuntu1 gcc-5_5.2.1-27ubuntu1 libc6-dev_2.21-0ubuntu5 libstdc++-5-dev_5.2.1-27ubuntu1 libstdc++6_5.2.1-27ubuntu1 linux-libc-dev_4.3.0-1.10 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.1.3 apt-transport-https_1.1.3 autoconf_2.69-9 autoconf-archive_20150224-2.1 automake_1:1.15-1ubuntu1 autopoint_0.19.4-1ubuntu3 autotools-dev_20150820.1 base-files_9.4ubuntu3 base-passwd_3.5.38 bash_4.3-14ubuntu1 binutils_2.25.90.20151125-2ubuntu1 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.27.1-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 coreutils_8.23-4ubuntu2 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perl-base_5.20.2-6 perl-modules_5.20.2-6 pkg-create-dbgsym_0.70 pkgbinarymangler_123 po-debconf_1.0.18 policyrcd-script-zg2_0.1-2 poppler-data_0.4.7-5 preview-latex-style_11.88-1.1ubuntu1 procps_2:3.3.10-4ubuntu1 python_2.7.9-1 python-apt_1.1.0~beta1 python-apt-common_1.1.0~beta1 python-dev_2.7.9-1 python-minimal_2.7.9-1 python2.7_2.7.10-4ubuntu2 python2.7-dev_2.7.10-4ubuntu2 python2.7-minimal_2.7.10-4ubuntu2 readline-common_6.3-8ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mira-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 sgml-base_1.26+nmu4ubuntu1 sgml-data_2.0.10 systemd_228-2ubuntu1 systemd-sysv_228-2ubuntu1 sysv-rc_2.88dsf-59.2ubuntu3 sysvinit-utils_2.88dsf-59.2ubuntu3 t1utils_1.38-4 tar_1.28-2.1 tex-common_6.04 texlive_2015.20150625-1ubuntu1 texlive-base_2015.20150625-1ubuntu1 texlive-bibtex-extra_2015.20151116-1 texlive-binaries_2015.20150524.37493-7build2 texlive-extra-utils_2015.20151116-1 texlive-fonts-recommended_2015.20150625-1ubuntu1 texlive-latex-base_2015.20150625-1ubuntu1 texlive-latex-extra_2015.20151116-1 texlive-latex-recommended_2015.20150625-1ubuntu1 texlive-math-extra_2015.20151116-1 texlive-pictures_2015.20150625-1ubuntu1 tzdata_2015g-1 ubuntu-keyring_2012.05.19 ucf_3.0031 udev_228-2ubuntu1 util-linux_2.27.1-1ubuntu3 vim-common_2:7.4.826-1ubuntu1 x11-common_1:7.7+12ubuntu1 xdg-utils_1.1.0~rc3+git20150907-1ubuntu3 xml-core_0.13+nmu2 xsltproc_1.1.28-2.1 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu4 zlib1g-dev_1:1.2.8.dfsg-2ubuntu4 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Fri Dec 4 12:14:48 2015 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./mira_4.9.5-2.dsc dpkg-source: info: extracting mira in mira-4.9.5 dpkg-source: info: unpacking mira_4.9.5.orig.tar.bz2 dpkg-source: info: unpacking mira_4.9.5-2.debian.tar.xz dpkg-source: info: applying fix_strange_link_issue.patch dpkg-source: info: applying spelling.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=8 HOME=/home/buildd LANG=C LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package mira dpkg-buildpackage: source version 4.9.5-2 dpkg-buildpackage: source distribution unstable dpkg-source --before-build mira-4.9.5 dpkg-buildpackage: host architecture arm64 fakeroot debian/rules clean dh clean --with autoreconf dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/«PKGBUILDDIR»' ( cd doc ; make clean ) || true make[2]: Entering directory '/«PKGBUILDDIR»/doc' cd .. && make am--refresh make[3]: Entering directory '/«PKGBUILDDIR»' make[3]: *** No rule to make target 'am--refresh'. Stop. make[3]: Leaving directory '/«PKGBUILDDIR»' Makefile:261: recipe for target '../config.status' failed make[2]: *** [../config.status] Error 2 make[2]: Leaving directory '/«PKGBUILDDIR»/doc' dh_auto_clean find * -name Makefile -exec rm '{}' ';' find * -name '*.xxd.H' -exec rm '{}' ';' find * -name '*.par.H' -exec rm '{}' ';' find * -name 'compileinfo.*' -exec rm '{}' ';' make[1]: Leaving directory '/«PKGBUILDDIR»' dh_autoreconf_clean debian/rules override_dh_clean make[1]: Entering directory '/«PKGBUILDDIR»' dh_clean rm -f debian/mira-assembler.substvars rm -f debian/mira-assembler.*.debhelper rm -rf debian/mira-assembler/ rm -f debian/mira-examples.substvars rm -f debian/mira-examples.*.debhelper rm -rf debian/mira-examples/ rm -f debian/mira-doc.substvars rm -f debian/mira-doc.*.debhelper rm -rf debian/mira-doc/ rm -rf debian/.debhelper/ rm -f debian/*.debhelper.log rm -f debian/files rm -f -- src/io/so.obo.xxd find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f *-stamp rm -rf lib make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules build-arch dh build-arch --with autoreconf dh_testdir -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} \; > debian/autoreconf.before autoreconf -f -i libtoolize: putting auxiliary files in `.'. libtoolize: copying file `./ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'. libtoolize: copying file `m4/libtool.m4' libtoolize: copying file `m4/ltoptions.m4' libtoolize: copying file `m4/ltsugar.m4' libtoolize: copying file `m4/ltversion.m4' libtoolize: copying file `m4/lt~obsolete.m4' configure.ac:102: installing './compile' doc/docbook/Makefile.am:22: warning: '%'-style pattern rules are a GNU make extension src/io/Makefile.am:12: warning: '%'-style pattern rules are a GNU make extension src/mira/Makefile.am:10: warning: '%'-style pattern rules are a GNU make extension find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} \; > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/«PKGBUILDDIR»' mkdir lib ln -s /usr/lib/libtcmalloc_minimal.so.4 lib/libtcmalloc_minimal.so #dh_auto_configure dh_auto_configure -- --with-boost-libdir=/usr/lib/aarch64-linux-gnu ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --with-boost-libdir=/usr/lib/aarch64-linux-gnu configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '2001' is supported by ustar format... yes checking whether GID '2501' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking for a sed that does not truncate output... /bin/sed checking whether to add --prefix as include path... yes +++++++++++++++++++++++++++++++++++++ systemuname: Linux CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include CXXFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none +++++++++++++++++++++++++++++++++++++ systemuname: Linux CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include CXXFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for int64_t... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking whether long has 64bit... yes checking whether enabling 64bit compilation support... yes checking build system type... aarch64-unknown-linux-gnu checking for compiler optimisation settings... -O3 -funroll-loops +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether make sets $(MAKE)... (cached) yes checking whether ln -s works... yes checking for flex... yes checking for flex... flex checking lex output file root... lex.yy checking lex library... -lfl checking whether yytext is a pointer... yes checking for flex++... yes checking for xxd... yes checking for ANSI C header files... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for C/C++ restrict keyword... __restrict checking whether struct tm is in sys/time.h or time.h... time.h checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking whether lstat correctly handles trailing slash... yes checking whether stat accepts an empty string... no checking for strftime... yes checking for floor... no checking for memset... yes checking for pow... no checking for sqrt... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking for isblank... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking for boostlib >= 1.48.0... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -I/usr/include BOOST LDFLAGS: -L/usr/lib/aarch64-linux-gnu ac_boost_path: ac_boost_lib_path: /usr/lib/aarch64-linux-gnu CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -I/usr/include BOOST LDFLAGS: -L/usr/lib/aarch64-linux-gnu CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/aarch64-linux-gnu CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ checking whether the Boost::Thread library is available... yes checking for exit in -lboost_thread... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/aarch64-linux-gnu ac_boost_path: ac_boost_lib_path: /usr/lib/aarch64-linux-gnu BOOST_THREAD_LIB: -lboost_thread CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/aarch64-linux-gnu CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib +++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/aarch64-linux-gnu ac_boost_path: ac_boost_lib_path: /usr/lib/aarch64-linux-gnu BOOST_THREAD_LIB: -lboost_thread CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/aarch64-linux-gnu CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/aarch64-linux-gnu LIBS now: -lboost_thread +++++++++++++++++++++++++++++++++++++ checking whether the Boost::Regex library is available... yes checking for exit in -lboost_regex... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/aarch64-linux-gnu ac_boost_path: ac_boost_lib_path: /usr/lib/aarch64-linux-gnu BOOST_REGEX_LIB: -lboost_regex CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/aarch64-linux-gnu CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex +++++++++++++++++++++++++++++++++++++ checking whether the Boost::System library is available... yes checking for exit in -lboost_system... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/aarch64-linux-gnu ac_boost_path: ac_boost_lib_path: /usr/lib/aarch64-linux-gnu BOOST_SYSTEM_LIB: -lboost_system CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/aarch64-linux-gnu CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex -lboost_system +++++++++++++++++++++++++++++++++++++ checking whether the Boost::Filesystem library is available... yes checking for exit in -lboost_filesystem... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/aarch64-linux-gnu ac_boost_path: ac_boost_lib_path: /usr/lib/aarch64-linux-gnu BOOST_FILESYSTEM_LIB: -lboost_filesystem CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/aarch64-linux-gnu CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem +++++++++++++++++++++++++++++++++++++ checking whether the Boost::IOStreams library is available... yes checking for exit in -lboost_iostreams... yes +++++++++++++++++++++++++++++++++++++ BOOST_CPPFLAGS: -pthread -I/usr/include BOOST LDFLAGS: -L/usr/lib/aarch64-linux-gnu ac_boost_path: ac_boost_lib_path: /usr/lib/aarch64-linux-gnu BOOST_IOSTREAMS_LIB: -lboost_iostreams CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -Wl,-rpath,/usr/lib/aarch64-linux-gnu CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams +++++++++++++++++++++++++++++++++++++ checking for clock_gettime in -lrt... yes +++++++++++++++++++++++++++++++++++++ Need to specifically use rt library LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt +++++++++++++++++++++++++++++++++++++ checking for Expat XML Parser headers in /usr/include... found checking for Expat XML Parser libraries... found checking for Expat XML Parser... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -I/usr/include CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat +++++++++++++++++++++++++++++++++++++ checking if zlib is wanted... yes +++++++++++++++++++++++++++++++++++++ CFLAGS now: -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -I/usr/include CXXFLAGS now: -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include LDFLAGS now: -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib LIBS now: -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz +++++++++++++++++++++++++++++++++++++ checking for gzoffset in -lz... yes checking for BZ2_bzRead in -lbz2... yes checking for flex version compatible with MIRA... yes checking for profiling settings... no checking for purify... no checking whether mira should compile in public quiet mode... yes checking whether mira should compile with bound tracking... yes checking whether mira should compile with bug tracking... yes checking whether mira should compile with extended bug tracking... no checking whether mira should compile with function trace... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/stdinc/Makefile config.status: creating src/debuggersupport/Makefile config.status: creating src/memorc/Makefile config.status: creating src/errorhandling/Makefile config.status: creating src/util/Makefile config.status: creating src/io/Makefile config.status: creating src/mira/Makefile config.status: creating src/caf/Makefile config.status: creating src/support/Makefile config.status: creating src/scripts/Makefile config.status: creating src/modules/Makefile config.status: creating src/progs/Makefile config.status: creating doc/Makefile config.status: creating doc/docbook/Makefile config.status: creating distribution/Makefile config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode -------------------------------------------------------------------------------- Summary of MIRA configuration -------------------------------------------------------------------------------- Building version ................................. 4.9.5_2_linux-gnu_aarch64_dynamic We are building on ............................... Linux CPU supports 64 bit? ............................. yes Compiler family .................................. gcc Compiler optimisation flags used ................. -O3 -funroll-loops Do we compile in 64 bit? ......................... yes Building completely static? ...................... no BOOST expected to compile and link? .............. yes Linking with TCmalloc library? ................... no Have complete zlib support? ...................... yes Can MIRA be built on this system? ................ yes Using CFLAGS : -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/«PKGBUILDDIR»/lib -I/usr/include -O3 -funroll-loops -I/usr/include -Werror=uninitialized -Werror=return-type Using CXXFLAGS : -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 Using LDFLAGS : -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib Using LIBS : -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 Looks good, we do not expect compilation problems. -------------------------------------------------------------------------------- Type 'make' to make the binaries and then 'make install' to install them. make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_auto_build make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_build --parallel make -j8 make[2]: Entering directory '/«PKGBUILDDIR»' make all-recursive make[3]: Entering directory '/«PKGBUILDDIR»' Making all in src make[4]: Entering directory '/«PKGBUILDDIR»/src' make all-recursive make[5]: Entering directory '/«PKGBUILDDIR»/src' Making all in debuggersupport make[6]: Entering directory '/«PKGBUILDDIR»/src/debuggersupport' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o dbgsupport.o dbgsupport.C rm -f libmiradebuggersupport.a ar cru libmiradebuggersupport.a dbgsupport.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiradebuggersupport.a make[6]: Leaving directory '/«PKGBUILDDIR»/src/debuggersupport' Making all in io make[6]: Entering directory '/«PKGBUILDDIR»/src/io' Making .H out of .xxd mira_ft_set.xxd.H Making .H out of .xxd gap4_ft_so_map.xxd.H Reducing so.obo for smaller so.obo.xxd Making .H out of .xxd so2xgap4map.xxd.H Making .H out of .xxd oldso2so.xxd.H Making .H out of .xxd so.obo.xxd.H make all-am make[7]: Entering directory '/«PKGBUILDDIR»/src/io' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o annotationmappings.o annotationmappings.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o exp.o exp.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o generalio.o generalio.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o fasta.o fasta.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o fastq-mira.o fastq-mira.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o phd.o phd.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o scf.o scf.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o ncbiinfoxml.o ncbiinfoxml.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o exp_flexer.o exp_flexer.cc rm -f libmirafio.a ar cru libmirafio.a annotationmappings.o exp.o generalio.o fasta.o fastq-mira.o phd.o scf.o ncbiinfoxml.o exp_flexer.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmirafio.a make[7]: Leaving directory '/«PKGBUILDDIR»/src/io' make[6]: Leaving directory '/«PKGBUILDDIR»/src/io' Making all in stdinc make[6]: Entering directory '/«PKGBUILDDIR»/src/stdinc' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/stdinc' Making all in errorhandling make[6]: Entering directory '/«PKGBUILDDIR»/src/errorhandling' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o errorhandling.o errorhandling.C rm -f libmiraerrorhandling.a ar cru libmiraerrorhandling.a errorhandling.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiraerrorhandling.a make[6]: Leaving directory '/«PKGBUILDDIR»/src/errorhandling' Making all in util make[6]: Entering directory '/«PKGBUILDDIR»/src/util' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o machineinfo.o machineinfo.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o fileanddisk.o fileanddisk.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o misc.o misc.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o dptools.o dptools.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o fmttext.o fmttext.C rm -f libmirafmttext.a ar cru libmirafmttext.a fmttext.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmirafmttext.a fileanddisk.C:838:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush(); } ^ fileanddisk.C:50:0: note: this is the location of the previous definition #define CEBUG(bla) ^ fileanddisk.C:943:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ fileanddisk.C:838:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush(); } ^ rm -f libmiradptools.a ar cru libmiradptools.a dptools.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiradptools.a fileanddisk.C: In function 'int64 myGZRead(gzFile_s*&, void*, uint64)': fileanddisk.C:171:28: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] strerror_r(errno,buf,1024); ^ rm -f libmirautil.a ar cru libmirautil.a machineinfo.o fileanddisk.o misc.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmirautil.a make[6]: Leaving directory '/«PKGBUILDDIR»/src/util' Making all in mira make[6]: Entering directory '/«PKGBUILDDIR»/src/mira' Making .H out of .xxd adaptorsforclip.454.xxd.H Making .H out of .xxd adaptorsforclip.solexa.xxd.H Making .H out of .xxd adaptorsforclip.iontor.xxd.H Making .H out of .xxd adaptorsregex.solexa.xxd.H Making .H out of .xxd seqforfilter_phix174.solexa.xxd.H Making .H out of .xxd adaptorsregex.iontor.xxd.H make all-am make[7]: Entering directory '/«PKGBUILDDIR»/src/mira' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o estassembly.o estassembly.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o hashstats_sdbg.o hashstats_sdbg.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o hashstats.o hashstats.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o skim.o skim.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly.o assembly.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o contig.o contig.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o read.o read.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o contig_analysis.o contig_analysis.C hashstats.C:922:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} ^ hashstats.C:78:0: note: this is the location of the previous definition #define CEBUG(bla) ^ hashstats.C:1031:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ hashstats.C:922:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} ^ read.C: In member function 'void Read::dumpAsReadname(std::ostream&)': read.C:1262:33: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function 'void Read::dumpAsFASTA(std::ostream&, bool, bool, bool)': read.C:1293:33: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function 'void Read::dumpAsFASTQ(std::ostream&, bool, bool, bool)': read.C:1377:33: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function 'void Read::dumpAsFASTAQual(std::ostream&, bool, bool, bool)': read.C:1478:33: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function 'void Read::dumpAsCAF(std::ostream&)': read.C:1550:33: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] sprintf(buffer, "%x", this) ; ^ read.C: In member function 'void Read::dumpAsMAF(std::ostream&)': read.C:1968:33: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] sprintf(buffer, "%x", this) ; ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o ads.o ads.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o adsfacts.o adsfacts.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o align.o align.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_info.o assembly_info.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_buildcontigs.o assembly_buildcontigs.C assembly_buildcontigs.C:75:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush(); } ^ assembly_buildcontigs.C:50:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_buildcontigs.C:1238:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_buildcontigs.C:75:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush(); } ^ assembly_buildcontigs.C:1282:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush(); } ^ assembly_buildcontigs.C:1238:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_buildcontigs.C:1436:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_buildcontigs.C:1282:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush(); } ^ assembly_buildcontigs.C:1447:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush(); } ^ assembly_buildcontigs.C:1436:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_buildcontigs.C:1572:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_buildcontigs.C:1447:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush(); } ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_io.o assembly_io.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_misc.o assembly_misc.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_output.o assembly_output.C assembly_misc.C:1882:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_misc.C:52:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_misc.C:1916:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_misc.C:1882:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_pbcorrect.o assembly_pbcorrect.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_reduceskimhits.o assembly_reduceskimhits.C assembly_pbcorrect.C:58:0: warning: "CEBUG" redefined #define CEBUG(bla) { if(docebug) {cout << bla; cout.flush();}} ^ assembly_pbcorrect.C:44:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_reduceskimhits.C:1117:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_reduceskimhits.C:882:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_reduceskimhits.C:1157:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_reduceskimhits.C:1117:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_reduceskimhits.C:2784:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_reduceskimhits.C:1157:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_reduceskimhits.C:2803:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_reduceskimhits.C:2784:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_reduceskimhits.C:2807:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_reduceskimhits.C:2803:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_reduceskimhits.C:2847:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_reduceskimhits.C:2807:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_reduceskimhits.C:2852:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} ^ assembly_reduceskimhits.C:2847:0: note: this is the location of the previous definition #define CEBUG(bla) ^ assembly_reduceskimhits.C:2932:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ assembly_reduceskimhits.C:2852:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o assembly_swalign.o assembly_swalign.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o contig_consensus.o contig_consensus.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o contig_covanalysis.o contig_covanalysis.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o contig_edit.o contig_edit.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o contig_featureinfo.o contig_featureinfo.C contig_featureinfo.C:524:0: warning: "CEBUGF2" redefined #define CEBUGF2 ^ contig_featureinfo.C:485:0: note: this is the location of the previous definition #define CEBUGF2(bla) ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o contig_output.o contig_output.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o contig_pairconsistency.o contig_pairconsistency.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o dataprocessing.o dataprocessing.C contig_pairconsistency.C:312:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ contig_pairconsistency.C:33:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} ^ contig_pairconsistency.C:314:0: warning: "CEBUG" redefined #define CEBUG(bla) {cout << bla; cout.flush();} ^ contig_pairconsistency.C:312:0: note: this is the location of the previous definition #define CEBUG(bla) ^ contig_pairconsistency.C:398:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ contig_pairconsistency.C:314:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush();} ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o dynamic.o dynamic.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o gbf_parse.o gbf_parse.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o gff_parse.o gff_parse.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o gff_save.o gff_save.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o maf_parse.o maf_parse.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o manifest.o manifest.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o multitag.o multitag.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o parameters_flexer.o parameters_flexer.cc g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o parameters.o parameters.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o pcrcontainer.o pcrcontainer.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o ppathfinder.o ppathfinder.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o preventinitfiasco.o preventinitfiasco.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o readgrouplib.o readgrouplib.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o readlotstat.o readlotstat.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o readpool.o readpool.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o readpool_io.o readpool_io.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o sam_collect.o sam_collect.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o scaffolder.o scaffolder.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o seqtohash.o seqtohash.C scaffolder.C:201:0: warning: "CEBUG" redefined #define CEBUG(bla) ^ scaffolder.C:82:0: note: this is the location of the previous definition #define CEBUG(bla) {cout << bla; cout.flush(); } ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o simplebloomfilter.o simplebloomfilter.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o skim_lowbph.o skim_lowbph.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o warnings.o warnings.C rm -f libmiraestass.a ar cru libmiraestass.a estassembly.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiraestass.a rm -f libmira.a ar cru libmira.a hashstats_sdbg.o hashstats.o skim.o assembly.o contig.o read.o contig_analysis.o ads.o adsfacts.o align.o assembly_info.o assembly_buildcontigs.o assembly_io.o assembly_misc.o assembly_output.o assembly_pbcorrect.o assembly_reduceskimhits.o assembly_swalign.o contig_consensus.o contig_covanalysis.o contig_edit.o contig_featureinfo.o contig_output.o contig_pairconsistency.o dataprocessing.o dynamic.o gbf_parse.o gff_parse.o gff_save.o maf_parse.o manifest.o multitag.o parameters_flexer.o parameters.o pcrcontainer.o ppathfinder.o preventinitfiasco.o readgrouplib.o readlotstat.o readpool.o readpool_io.o sam_collect.o scaffolder.o seqtohash.o simplebloomfilter.o skim_lowbph.o warnings.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmira.a make[7]: Leaving directory '/«PKGBUILDDIR»/src/mira' make[6]: Leaving directory '/«PKGBUILDDIR»/src/mira' Making all in caf make[6]: Entering directory '/«PKGBUILDDIR»/src/caf' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o caf.o caf.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o caf_flexer.o caf_flexer.cc rm -f libmiracaf.a ar cru libmiracaf.a caf.o caf_flexer.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiracaf.a make[6]: Leaving directory '/«PKGBUILDDIR»/src/caf' Making all in memorc make[6]: Entering directory '/«PKGBUILDDIR»/src/memorc' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o memorc.o memorc.C memorc.C: In static member function 'static void MemORC::statistics()': memorc.C:152:61: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'uint64 {aka long unsigned int}' [-Wformat=] printf("Current alloc counter : %llu\n", MOC_alloccounter); ^ memorc.C:153:64: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'uint64 {aka long unsigned int}' [-Wformat=] printf("Total checks performed : %llu\n", MOC_checksperformed); ^ memorc.C:154:65: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'std::map::size_type {aka long unsigned int}' [-Wformat=] printf("Num. memory blocks : %llu\n", MOC_memblocks.size()); ^ memorc.C:155:65: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'std::map::size_type {aka long unsigned int}' [-Wformat=] printf("Num. active hot blocks : %llu\n", MOC_hotblocks.size()); ^ memorc.C:156:72: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'std::vector::size_type {aka long unsigned int}' [-Wformat=] printf("Num. pending hot blocks: %llu\n", MOC_hotaidsrequested.size()); ^ memorc.C:157:60: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'size_t {aka long unsigned int}' [-Wformat=] printf("Total mem reqested : %llu\n", MOC_reqmemalloc); ^ memorc.C:158:90: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'size_t {aka long unsigned int}' [-Wformat=] printf("Total mem allocated : %llu (including pads and fences)\n", MOC_totalmemalloc); ^ memorc.C: In static member function 'static void* MemORC::newMemBlock(size_t)': memorc.C:224:116: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'size_t {aka long unsigned int}' [-Wformat=] printf("Used malloc()\nTried to allocate %llu byte.\nSorry, memory allocation failed. Bailing out.\n", totaln); ^ memorc.C: In static member function 'static void MemORC::deleteMemBlock(void*)': memorc.C:310:112: warning: format '%d' expects argument of type 'int', but argument 2 has type 'uint64 {aka long unsigned int}' [-Wformat=] printf("Nearest memblock above (%d):\t",reinterpret_cast(mbI->first)-reinterpret_cast(usraddr)); ^ memorc.C:317:113: warning: format '%d' expects argument of type 'int', but argument 2 has type 'uint64 {aka long unsigned int}' [-Wformat=] printf("Nearest memblock below (-%d):\t",reinterpret_cast(usraddr)-reinterpret_cast(mbI->first)); ^ memorc.C: In static member function 'static bool MemORC::checkMemBlock(std::map::iterator)': memorc.C:429:134: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] printf("check: lower fence .0 destroyed at position: %d\tExpected: %x\tGot: %x\n", i*sizeof(int32),MOC_clowfencemagic[0], *fencecptr); ^ memorc.C:432:136: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] printf("check: lower fence .1 destroyed at position: %d\tExpected: %x\tGot: %x\n", i*sizeof(int32)+1,MOC_clowfencemagic[1], *fencecptr); ^ memorc.C:435:136: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] printf("check: lower fence .2 destroyed at position: %d\tExpected: %x\tGot: %x\n", i*sizeof(int32)+2,MOC_clowfencemagic[2], *fencecptr); ^ memorc.C:438:136: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] printf("check: lower fence .3 destroyed at position: %d\tExpected: %x\tGot: %x\n", i*sizeof(int32)+3,MOC_clowfencemagic[3], *fencecptr); ^ memorc.C:499:44: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'size_t {aka long unsigned int}' [-Wformat=] printf("Size: %llu\n", mbI->second.size); ^ memorc.C:500:50: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'uint64 {aka long unsigned int}' [-Wformat=] printf("AllocID: %llu\n", mbI->second.allocid); ^ memorc.C: In static member function 'static void MemORC::printMemBlockInfo(std::map::iterator)': memorc.C:557:50: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 3 has type 'size_t {aka long unsigned int}' [-Wformat=] printf("%p\t%llu\t",mbI->first,mbI->second.size); ^ memorc.C:563:40: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'uint64 {aka long unsigned int}' [-Wformat=] printf("\t%llu\n",mbI->second.allocid); ^ rm -f libmemorc.a g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o main.o main.C ar cru libmemorc.a memorc.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmemorc.a /bin/bash ../../libtool --tag=CXX --mode=link g++ -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf/ -L/usr/lib/aarch64-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib -o main main.o -lmiraerrorhandling -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o main main.o -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf/ -L/usr/lib/aarch64-linux-gnu -L/usr/lib -lmiraerrorhandling -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/aarch64-linux-gnu/libexpat.so -lm -lz -lbz2 -pthread make[6]: Leaving directory '/«PKGBUILDDIR»/src/memorc' Making all in modules make[6]: Entering directory '/«PKGBUILDDIR»/src/modules' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o mod_sigconex.o mod_sigconex.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o mod_scaffold.o mod_scaffold.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o mod_bait.o mod_bait.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o mod_dbgreplay.o mod_dbgreplay.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o mod_diff.o mod_diff.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o mod_mer.o mod_mer.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o mod_mira.o mod_mira.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o mod_convert.o mod_convert.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o mod_memestim.o mod_memestim.C mod_mira.C: In function 'void miraMain_launchWrapped(int, char**)': mod_mira.C:424:21: warning: ignoring return value of 'int chdir(const char*)', declared with attribute warn_unused_result [-Wunused-result] chdir("../.."); ^ mod_mira.C:449:21: warning: ignoring return value of 'int chdir(const char*)', declared with attribute warn_unused_result [-Wunused-result] chdir("../.."); ^ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o mod_tagsnp.o mod_tagsnp.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o misc.o misc.C rm -f libmiramodules.a ar cru libmiramodules.a mod_sigconex.o mod_scaffold.o mod_bait.o mod_dbgreplay.o mod_diff.o mod_mer.o mod_mira.o mod_convert.o mod_memestim.o mod_tagsnp.o misc.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmiramodules.a make[6]: Leaving directory '/«PKGBUILDDIR»/src/modules' Making all in progs make[6]: Entering directory '/«PKGBUILDDIR»/src/progs' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o quirks.o quirks.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o miratest.o miratest.C Making .H out of .xxd compileinfo.itxt g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -c -o mira.o mira.C /bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/aarch64-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib -o mira mira.o quirks.o -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o mira mira.o quirks.o -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/aarch64-linux-gnu -L/usr/lib -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/aarch64-linux-gnu/libexpat.so -lm -lz -lbz2 -pthread /bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/aarch64-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib -o miratest miratest.o -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o miratest miratest.o -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/aarch64-linux-gnu -L/usr/lib -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt /usr/lib/aarch64-linux-gnu/libexpat.so -lm -lz -lbz2 -pthread make[6]: Leaving directory '/«PKGBUILDDIR»/src/progs' Making all in support make[6]: Entering directory '/«PKGBUILDDIR»/src/support' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/support' Making all in scripts make[6]: Entering directory '/«PKGBUILDDIR»/src/scripts' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/scripts' make[6]: Entering directory '/«PKGBUILDDIR»/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src' make[4]: Leaving directory '/«PKGBUILDDIR»/src' make[4]: Entering directory '/«PKGBUILDDIR»' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/«PKGBUILDDIR»' make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_auto_test make[1]: Entering directory '/«PKGBUILDDIR»' make check make[2]: Entering directory '/«PKGBUILDDIR»' make check-recursive make[3]: Entering directory '/«PKGBUILDDIR»' Making check in src make[4]: Entering directory '/«PKGBUILDDIR»/src' make check-recursive make[5]: Entering directory '/«PKGBUILDDIR»/src' Making check in debuggersupport make[6]: Entering directory '/«PKGBUILDDIR»/src/debuggersupport' make[6]: Nothing to be done for 'check'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/debuggersupport' Making check in io make[6]: Entering directory '/«PKGBUILDDIR»/src/io' make check-am make[7]: Entering directory '/«PKGBUILDDIR»/src/io' make[7]: Nothing to be done for 'check-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/io' make[6]: Leaving directory '/«PKGBUILDDIR»/src/io' Making check in stdinc make[6]: Entering directory '/«PKGBUILDDIR»/src/stdinc' make[6]: Nothing to be done for 'check'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/stdinc' Making check in errorhandling make[6]: Entering directory '/«PKGBUILDDIR»/src/errorhandling' make[6]: Nothing to be done for 'check'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/errorhandling' Making check in util make[6]: Entering directory '/«PKGBUILDDIR»/src/util' make[6]: Nothing to be done for 'check'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/util' Making check in mira make[6]: Entering directory '/«PKGBUILDDIR»/src/mira' make check-am make[7]: Entering directory '/«PKGBUILDDIR»/src/mira' make[7]: Nothing to be done for 'check-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/mira' make[6]: Leaving directory '/«PKGBUILDDIR»/src/mira' Making check in caf make[6]: Entering directory '/«PKGBUILDDIR»/src/caf' make[6]: Nothing to be done for 'check'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/caf' Making check in memorc make[6]: Entering directory '/«PKGBUILDDIR»/src/memorc' make[6]: Nothing to be done for 'check'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/memorc' Making check in modules make[6]: Entering directory '/«PKGBUILDDIR»/src/modules' make[6]: Nothing to be done for 'check'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/modules' Making check in progs make[6]: Entering directory '/«PKGBUILDDIR»/src/progs' Making .H out of .xxd compileinfo.itxt make[6]: Leaving directory '/«PKGBUILDDIR»/src/progs' Making check in support make[6]: Entering directory '/«PKGBUILDDIR»/src/support' make[6]: Nothing to be done for 'check'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/support' Making check in scripts make[6]: Entering directory '/«PKGBUILDDIR»/src/scripts' make[6]: Nothing to be done for 'check'. make[6]: Leaving directory '/«PKGBUILDDIR»/src/scripts' make[6]: Entering directory '/«PKGBUILDDIR»/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src' make[4]: Leaving directory '/«PKGBUILDDIR»/src' make[4]: Entering directory '/«PKGBUILDDIR»' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/«PKGBUILDDIR»' make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' fakeroot debian/rules binary-arch dh binary-arch --with autoreconf dh_testroot -a dh_prep -a rm -f debian/mira-assembler.substvars rm -f debian/mira-assembler.*.debhelper rm -rf debian/mira-assembler/ dh_installdirs -a install -d debian/mira-assembler install -d debian/mira-assembler/usr/bin debian/rules override_dh_auto_install make[1]: Entering directory '/«PKGBUILDDIR»' make install DESTDIR=/«PKGBUILDDIR»/debian/mira-assembler make[2]: Entering directory '/«PKGBUILDDIR»' make install-recursive make[3]: Entering directory '/«PKGBUILDDIR»' Making install in src make[4]: Entering directory '/«PKGBUILDDIR»/src' make install-recursive make[5]: Entering directory '/«PKGBUILDDIR»/src' Making install in debuggersupport make[6]: Entering directory '/«PKGBUILDDIR»/src/debuggersupport' make[7]: Entering directory '/«PKGBUILDDIR»/src/debuggersupport' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/debuggersupport' make[6]: Leaving directory '/«PKGBUILDDIR»/src/debuggersupport' Making install in io make[6]: Entering directory '/«PKGBUILDDIR»/src/io' make install-am make[7]: Entering directory '/«PKGBUILDDIR»/src/io' make[8]: Entering directory '/«PKGBUILDDIR»/src/io' make[8]: Nothing to be done for 'install-exec-am'. make[8]: Nothing to be done for 'install-data-am'. make[8]: Leaving directory '/«PKGBUILDDIR»/src/io' make[7]: Leaving directory '/«PKGBUILDDIR»/src/io' make[6]: Leaving directory '/«PKGBUILDDIR»/src/io' Making install in stdinc make[6]: Entering directory '/«PKGBUILDDIR»/src/stdinc' make[7]: Entering directory '/«PKGBUILDDIR»/src/stdinc' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/stdinc' make[6]: Leaving directory '/«PKGBUILDDIR»/src/stdinc' Making install in errorhandling make[6]: Entering directory '/«PKGBUILDDIR»/src/errorhandling' make[7]: Entering directory '/«PKGBUILDDIR»/src/errorhandling' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/errorhandling' make[6]: Leaving directory '/«PKGBUILDDIR»/src/errorhandling' Making install in util make[6]: Entering directory '/«PKGBUILDDIR»/src/util' make[7]: Entering directory '/«PKGBUILDDIR»/src/util' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/util' make[6]: Leaving directory '/«PKGBUILDDIR»/src/util' Making install in mira make[6]: Entering directory '/«PKGBUILDDIR»/src/mira' make install-am make[7]: Entering directory '/«PKGBUILDDIR»/src/mira' make[8]: Entering directory '/«PKGBUILDDIR»/src/mira' make[8]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/«PKGBUILDDIR»/debian/mira-assembler/usr/share/mira' /usr/bin/install -c -m 644 demoparam.prm '/«PKGBUILDDIR»/debian/mira-assembler/usr/share/mira' make[8]: Leaving directory '/«PKGBUILDDIR»/src/mira' make[7]: Leaving directory '/«PKGBUILDDIR»/src/mira' make[6]: Leaving directory '/«PKGBUILDDIR»/src/mira' Making install in caf make[6]: Entering directory '/«PKGBUILDDIR»/src/caf' make[7]: Entering directory '/«PKGBUILDDIR»/src/caf' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/caf' make[6]: Leaving directory '/«PKGBUILDDIR»/src/caf' Making install in memorc make[6]: Entering directory '/«PKGBUILDDIR»/src/memorc' make[7]: Entering directory '/«PKGBUILDDIR»/src/memorc' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/memorc' make[6]: Leaving directory '/«PKGBUILDDIR»/src/memorc' Making install in modules make[6]: Entering directory '/«PKGBUILDDIR»/src/modules' make[7]: Entering directory '/«PKGBUILDDIR»/src/modules' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/modules' make[6]: Leaving directory '/«PKGBUILDDIR»/src/modules' Making install in progs make[6]: Entering directory '/«PKGBUILDDIR»/src/progs' Making .H out of .xxd compileinfo.itxt make[7]: Entering directory '/«PKGBUILDDIR»/src/progs' Making .H out of .xxd compileinfo.itxt /bin/mkdir -p '/«PKGBUILDDIR»/debian/mira-assembler/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c mira '/«PKGBUILDDIR»/debian/mira-assembler/usr/bin' libtool: install: /usr/bin/install -c mira /«PKGBUILDDIR»/debian/mira-assembler/usr/bin/mira make install-exec-hook make[8]: Entering directory '/«PKGBUILDDIR»/src/progs' cd /«PKGBUILDDIR»/debian/mira-assembler/usr/bin && \ rm -f miramem && \ ln -s mira miramem && \ rm -f mirabait && \ ln -s mira mirabait &&\ rm -f miraconvert && \ ln -s mira miraconvert && \ rm -f miramer && \ ln -s mira miramer make[8]: Leaving directory '/«PKGBUILDDIR»/src/progs' make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/progs' make[6]: Leaving directory '/«PKGBUILDDIR»/src/progs' Making install in support make[6]: Entering directory '/«PKGBUILDDIR»/src/support' make[7]: Entering directory '/«PKGBUILDDIR»/src/support' make[7]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/«PKGBUILDDIR»/debian/mira-assembler/usr/share/mira/support_3rdparty_tools' /usr/bin/install -c -m 644 consedrc.13.0 consedtaglib.txt GTAGDB README '/«PKGBUILDDIR»/debian/mira-assembler/usr/share/mira/support_3rdparty_tools' make[7]: Leaving directory '/«PKGBUILDDIR»/src/support' make[6]: Leaving directory '/«PKGBUILDDIR»/src/support' Making install in scripts make[6]: Entering directory '/«PKGBUILDDIR»/src/scripts' make[7]: Entering directory '/«PKGBUILDDIR»/src/scripts' make install-exec-hook make[8]: Entering directory '/«PKGBUILDDIR»/src/scripts' rm -f /«PKGBUILDDIR»/debian/mira-assembler/usr/bin/fixACE4consed.tcl && \ cp fixACE4consed.tcl /«PKGBUILDDIR»/debian/mira-assembler/usr/bin rm -f /«PKGBUILDDIR»/debian/mira-assembler/usr/bin/fasta2frag.tcl && \ cp fasta2frag.tcl /«PKGBUILDDIR»/debian/mira-assembler/usr/bin make[8]: Leaving directory '/«PKGBUILDDIR»/src/scripts' make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src/scripts' make[6]: Leaving directory '/«PKGBUILDDIR»/src/scripts' make[6]: Entering directory '/«PKGBUILDDIR»/src' make[7]: Entering directory '/«PKGBUILDDIR»/src' make[7]: Nothing to be done for 'install-exec-am'. make[7]: Nothing to be done for 'install-data-am'. make[7]: Leaving directory '/«PKGBUILDDIR»/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src' make[4]: Leaving directory '/«PKGBUILDDIR»/src' make[4]: Entering directory '/«PKGBUILDDIR»' make[5]: Entering directory '/«PKGBUILDDIR»' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/«PKGBUILDDIR»' make[4]: Leaving directory '/«PKGBUILDDIR»' make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' #There is no installation target for the docs mkdir -p /«PKGBUILDDIR»/debian/tmp/usr/share/doc/mira-assembler cp -r -t /«PKGBUILDDIR»/debian/tmp/usr/share/doc/mira-assembler doc/docbook/bookfigures doc/docbook/images \ doc/docbook/doccss doc/docbook/DefinitiveGuideToMIRA.html || true cp: cannot stat 'doc/docbook/DefinitiveGuideToMIRA.html': No such file or directory make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_install make[1]: Entering directory '/«PKGBUILDDIR»' dh_install if [ -d debian/mira-assembler ] ; then \ for f in $(ls debian/mira-assembler/usr/bin/*.tcl) ; do mv "$f" "${f%.tcl}"; done \ fi # In version 3.9.17 executing miraSearchESTSNPs just leads to "De-activated atm, sorry." # If this is the case, it should not be installed for deactivated in miraSearchESTSNPs miraclip ; do \ if [ -e debian/mira-assembler/usr/bin/${deactivated} ] ; then \ if [ "`debian/mira-assembler/usr/bin/${deactivated} 2>&1 | tee`" = "De-activated atm, sorry." ] ; then rm -f debian/mira-assembler/usr/bin/${deactivated} ; fi \ else \ echo "debian/mira-assembler/usr/bin/${deactivated} does not exist" ; \ fi ; \ done debian/mira-assembler/usr/bin/miraSearchESTSNPs does not exist debian/mira-assembler/usr/bin/miraclip does not exist make[1]: Leaving directory '/«PKGBUILDDIR»' dh_installdocs -a install -d debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a NEWS debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a README debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a THANKS debian/mira-assembler/usr/share/doc/mira-assembler cp --reflink=auto -a HELP_WANTED debian/mira-assembler/usr/share/doc/mira-assembler chown -R 0:0 debian/mira-assembler/usr/share/doc chmod -R go=rX debian/mira-assembler/usr/share/doc chmod -R u\+rw debian/mira-assembler/usr/share/doc install -p -m0644 debian/copyright debian/mira-assembler/usr/share/doc/mira-assembler/copyright dh_installchangelogs -a install -p -m0644 debian/changelog debian/mira-assembler/usr/share/doc/mira-assembler/changelog.Debian debian/rules override_dh_installexamples make[1]: Entering directory '/«PKGBUILDDIR»' dh_installexamples # avoid duplicated files if cmp /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.fasta.qual /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.sanger.fasta.qual >/dev/null ; then \ echo "removing copy of usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.fasta.qual and create symling" ; \ rm -f /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.sanger.fasta.qual ; \ ln -s cjejuni_demo_in.fasta.qual.gz /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.sanger.fasta.qual.gz ; \ fi cmp: /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.fasta.qual: No such file or directory if cmp /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.fasta /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.sanger.fasta >/dev/null ; then \ echo "removing copy of usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.fasta and create symling" ; \ rm -f /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.sanger.fasta ; \ ln -s cjejuni_demo_in.fasta.gz /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.sanger.fasta.gz ; \ fi cmp: /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_in.fasta: No such file or directory if cmp /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_NCTC11168_first40kb.gbf /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_backbone_in.gbf >/dev/null ; then \ echo "removing copy of usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_NCTC11168_first40kb.gbf and create symling" ; \ rm -f /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_backbone_in.gbf ; \ ln -s cjejuni_NCTC11168_first40kb.gbf.gz /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_backbone_in.gbf.gz ; \ fi cmp: /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_NCTC11168_first40kb.gbf: No such file or directory if cmp /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_traceinfo_in.xml /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_traceinfo_in.sanger.xml >/dev/null ; then \ echo "removing copy of usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_traceinfo_in.xml and create symling" ; \ rm -f /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_traceinfo_in.sanger.xml ; \ ln -s cjejuni_demo_traceinfo_in.xml.gz /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_traceinfo_in.sanger.xml.gz ; \ fi cmp: /«PKGBUILDDIR»/debian/mira-examples/usr/share/doc/mira-examples/examples/minidemo/data/bbdataset1//cjejuni_demo_traceinfo_in.xml: No such file or directory make[1]: Leaving directory '/«PKGBUILDDIR»' dh_installman -a install -d debian/mira-assembler/usr/share/man/man1/ install -p -m0644 debian/mans/convert_project.1 debian/mira-assembler/usr/share/man/man1/convert_project.1 install -p -m0644 debian/mans/fasta2frag.1 debian/mira-assembler/usr/share/man/man1/fasta2frag.1 install -p -m0644 debian/mans/fastaselect.1 debian/mira-assembler/usr/share/man/man1/fastaselect.1 install -p -m0644 debian/mans/fastatool.1 debian/mira-assembler/usr/share/man/man1/fastatool.1 install -p -m0644 debian/mans/fastqselect.1 debian/mira-assembler/usr/share/man/man1/fastqselect.1 install -p -m0644 debian/mans/fixACE4consed.1 debian/mira-assembler/usr/share/man/man1/fixACE4consed.1 install -p -m0644 debian/mans/mira.1 debian/mira-assembler/usr/share/man/man1/mira.1 install -p -m0644 debian/mans/mirabait.1 debian/mira-assembler/usr/share/man/man1/mirabait.1 install -p -m0644 debian/mans/miraconvert.1 debian/mira-assembler/usr/share/man/man1/miraconvert.1 install -p -m0644 debian/mans/miradiff.1 debian/mira-assembler/usr/share/man/man1/miradiff.1 install -p -m0644 debian/mans/miramem.1 debian/mira-assembler/usr/share/man/man1/miramem.1 install -p -m0644 debian/mans/miramer.1 debian/mira-assembler/usr/share/man/man1/miramer.1 install -p -m0644 debian/mans/miraSearchESTSNPs.1 debian/mira-assembler/usr/share/man/man1/miraSearchESTSNPs.1 install -p -m0644 debian/mans/scftool.1 debian/mira-assembler/usr/share/man/man1/scftool.1 man --recode UTF-8 ./miraSearchESTSNPs\.1 > miraSearchESTSNPs\.1\.new chmod 644 miraSearchESTSNPs.1.new mv -f miraSearchESTSNPs.1.new miraSearchESTSNPs.1 man --recode UTF-8 ./miramem\.1 > miramem\.1\.new chmod 644 miramem.1.new mv -f miramem.1.new miramem.1 man --recode UTF-8 ./fastaselect\.1 > fastaselect\.1\.new chmod 644 fastaselect.1.new mv -f fastaselect.1.new fastaselect.1 man --recode UTF-8 ./convert_project\.1 > convert_project\.1\.new chmod 644 convert_project.1.new mv -f convert_project.1.new convert_project.1 man --recode UTF-8 ./miramer\.1 > miramer\.1\.new chmod 644 miramer.1.new mv -f miramer.1.new miramer.1 man --recode UTF-8 ./mira\.1 > mira\.1\.new chmod 644 mira.1.new mv -f mira.1.new mira.1 man --recode UTF-8 ./miradiff\.1 > miradiff\.1\.new chmod 644 miradiff.1.new mv -f miradiff.1.new miradiff.1 man --recode UTF-8 ./fixACE4consed\.1 > fixACE4consed\.1\.new chmod 644 fixACE4consed.1.new mv -f fixACE4consed.1.new fixACE4consed.1 man --recode UTF-8 ./fastatool\.1 > fastatool\.1\.new chmod 644 fastatool.1.new mv -f fastatool.1.new fastatool.1 man --recode UTF-8 ./fastqselect\.1 > fastqselect\.1\.new chmod 644 fastqselect.1.new mv -f fastqselect.1.new fastqselect.1 man --recode UTF-8 ./mirabait\.1 > mirabait\.1\.new chmod 644 mirabait.1.new mv -f mirabait.1.new mirabait.1 man --recode UTF-8 ./fasta2frag\.1 > fasta2frag\.1\.new chmod 644 fasta2frag.1.new mv -f fasta2frag.1.new fasta2frag.1 man --recode UTF-8 ./miraconvert\.1 > miraconvert\.1\.new chmod 644 miraconvert.1.new mv -f miraconvert.1.new miraconvert.1 man --recode UTF-8 ./scftool\.1 > scftool\.1\.new chmod 644 scftool.1.new mv -f scftool.1.new scftool.1 dh_lintian -a install -d debian/mira-assembler/usr/share/lintian/overrides install -p -m0644 debian/mira-assembler.lintian-overrides debian/mira-assembler/usr/share/lintian/overrides/mira-assembler dh_perl -a dh_link -a rm -f debian/mira-assembler/usr/bin/miramem ln -sf mira debian/mira-assembler/usr/bin/miramem rm -f debian/mira-assembler/usr/bin/mirabait ln -sf mira debian/mira-assembler/usr/bin/mirabait rm -f debian/mira-assembler/usr/bin/miraconvert ln -sf mira debian/mira-assembler/usr/bin/miraconvert rm -f debian/mira-assembler/usr/bin/miramer ln -sf mira debian/mira-assembler/usr/bin/miramer dh_strip_nondeterminism -a dh_compress -a cd debian/mira-assembler chmod a-x usr/share/doc/mira-assembler/NEWS usr/share/doc/mira-assembler/changelog.Debian usr/share/man/man1/convert_project.1 usr/share/man/man1/fasta2frag.1 usr/share/man/man1/fastaselect.1 usr/share/man/man1/fastatool.1 usr/share/man/man1/fastqselect.1 usr/share/man/man1/fixACE4consed.1 usr/share/man/man1/mira.1 usr/share/man/man1/miraSearchESTSNPs.1 usr/share/man/man1/mirabait.1 usr/share/man/man1/miraconvert.1 usr/share/man/man1/miradiff.1 usr/share/man/man1/miramem.1 usr/share/man/man1/miramer.1 usr/share/man/man1/scftool.1 gzip -9nf usr/share/doc/mira-assembler/NEWS usr/share/doc/mira-assembler/changelog.Debian usr/share/man/man1/convert_project.1 usr/share/man/man1/fasta2frag.1 usr/share/man/man1/fastaselect.1 usr/share/man/man1/fastatool.1 usr/share/man/man1/fastqselect.1 usr/share/man/man1/fixACE4consed.1 usr/share/man/man1/mira.1 usr/share/man/man1/miraSearchESTSNPs.1 usr/share/man/man1/mirabait.1 usr/share/man/man1/miraconvert.1 usr/share/man/man1/miradiff.1 usr/share/man/man1/miramem.1 usr/share/man/man1/miramer.1 usr/share/man/man1/scftool.1 cd '/«PKGBUILDDIR»' dh_fixperms -a find debian/mira-assembler -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/mira-assembler ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/mira-assembler/usr/share/doc -type f ! -regex 'debian/mira-assembler/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 0755 find debian/mira-assembler/usr/share/man debian/mira-assembler/usr/man/ debian/mira-assembler/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler/usr/lib/aarch64-linux-gnu/perl5/5.20 debian/mira-assembler/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/mira-assembler -perm -5 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x find debian/mira-assembler/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w find debian/mira-assembler/usr/share/lintian/overrides -type f -print0 2>/dev/null | xargs -0r chmod 0644 dh_strip -a dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform arm64: mira-assembler dh_strip debug symbol extraction: packages to act on: mira-assembler dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol strip --remove-section=.comment --remove-section=.note debian/mira-assembler/usr/bin/mira dh_makeshlibs -a rm -f debian/mira-assembler/DEBIAN/shlibs dh_shlibdeps -a install -d debian/mira-assembler/DEBIAN dpkg-shlibdeps -Tdebian/mira-assembler.substvars debian/mira-assembler/usr/bin/mira dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mira-assembler/usr/bin/mira was not linked against ld-linux-aarch64.so.1 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a echo misc:Depends= >> debian/mira-assembler.substvars echo misc:Pre-Depends= >> debian/mira-assembler.substvars dpkg-gencontrol -pmira-assembler -ldebian/changelog -Tdebian/mira-assembler.substvars -Pdebian/mira-assembler dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe chmod 0644 debian/mira-assembler/DEBIAN/control chown 0:0 debian/mira-assembler/DEBIAN/control dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform arm64: mira-assembler dh_gencontrol debug symbol wrapper: packages to act on: mira-assembler dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package mira-assembler (pkgdir debian/mira-assembler, ddeb package dir debian/mira-assembler-dbgsym) dh_gencontrol debug symbol wrapper: building mira-assembler-dbgsym_4.9.5-2_arm64.ddeb dpkg-deb: building package 'mira-assembler-dbgsym' in '../mira-assembler-dbgsym_4.9.5-2_arm64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile mira-assembler-dbgsym_4.9.5-2_arm64.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a (cd debian/mira-assembler >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 0644 debian/mira-assembler/DEBIAN/md5sums chown 0:0 debian/mira-assembler/DEBIAN/md5sums debian/rules override_dh_builddeb make[1]: Entering directory '/«PKGBUILDDIR»' dh_builddeb -- -Z xz dpkg-deb -Z xz --build debian/mira-assembler .. INFO: pkgstriptranslations version 123 pkgstriptranslations: processing mira-assembler (in debian/mira-assembler); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/mira-assembler/DEBIAN/control, package mira-assembler, directory debian/mira-assembler pkgstripfiles: Truncating usr/share/doc/mira-assembler/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 8 cpus) for package mira-assembler ... pkgstripfiles: No PNG files. dpkg-deb: building package 'mira-assembler' in '../mira-assembler_4.9.5-2_arm64.deb'. make[1]: Leaving directory '/«PKGBUILDDIR»' dpkg-genchanges -B -mLaunchpad Build Daemon >../mira_4.9.5-2_arm64.changes dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build mira-4.9.5 dpkg-buildpackage: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20151204-2034 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ mira_4.9.5-2_arm64.changes: ─────────────────────────── Format: 1.8 Date: Fri, 04 Dec 2015 12:56:09 +0100 Source: mira Binary: mira-assembler mira-examples mira-doc Architecture: arm64 Version: 4.9.5-2 Distribution: xenial-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: mira-assembler - Whole Genome Shotgun and EST Sequence Assembler mira-doc - documentation for the mira assembler mira-examples - files to experiment with the mira assembler Closes: 793261 Changes: mira (4.9.5-2) unstable; urgency=medium . * Verify that package builds without problems with gcc-5 Closes: #793261 * override false lintian positives * Fix spelling * wrote missing manpage and moved manpages to separate dir Checksums-Sha1: dbdfec818dd9b2e72f14af997c6643eed6ba9c5e 14394608 mira-assembler-dbgsym_4.9.5-2_arm64.ddeb e2f7204e9d7c74ebded3fd889275c16c2d47a110 1746700 mira-assembler_4.9.5-2_arm64.deb Checksums-Sha256: 517a6772541db3cd5295364ba69111e0b7db3e41b37e902a8720abe1494cdfa3 14394608 mira-assembler-dbgsym_4.9.5-2_arm64.ddeb baf7f75c1a369650140b2f55c9548494c5c18c2245f6f6a33fe99b5c5e319dbd 1746700 mira-assembler_4.9.5-2_arm64.deb Files: 864c57a1a62c170b59820cdd4d48006c 14394608 science extra mira-assembler-dbgsym_4.9.5-2_arm64.ddeb 4cf6d890a24f2de0350220216745984d 1746700 science optional mira-assembler_4.9.5-2_arm64.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ mira-assembler_4.9.5-2_arm64.deb ──────────────────────────────── new debian package, version 2.0. size 1746700 bytes: control archive=2383 bytes. 2611 bytes, 48 lines control 2035 bytes, 29 lines md5sums Package: mira-assembler Source: mira Version: 4.9.5-2 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 4884 Depends: libboost-filesystem1.58.0, libboost-regex1.58.0, libboost-system1.58.0, libboost-thread1.58.0, libc6 (>= 2.17), libexpat1 (>= 2.0.1), libgcc1 (>= 1:4.7), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.6) Suggests: mira-examples, mira-doc Section: science Priority: optional Homepage: http://chevreux.org/projects_mira.html Description: Whole Genome Shotgun and EST Sequence Assembler The mira genome fragment assembler is a specialised assembler for sequencing projects classified as 'hard' due to high number of similar repeats. For expressed sequence tags (ESTs) transcripts, miraEST is specialised on reconstructing pristine mRNA transcripts while detecting and classifying single nucleotide polymorphisms (SNP) occuring in different variations thereof. . The assembler is routinely used for such various tasks as mutation detection in different cell types, similarity analysis of transcripts between organisms, and pristine assembly of sequences from various sources for oligo design in clinical microarray experiments. . The package provides the following executables: Binaries provided: * mira: for assembly of genome sequences * miramem: estimating memory needed to assemble projects. Realised through link to mira. * convert_project: for converting project file types into other types * caf2fasta, caf2gbf, caf2text, caf2html, gbf2caf and gbf2fasta are some frequently used file converters (realised through links to convert_project) * scftool: set of tools useful when working with SCF trace files * fastatool: set of tools useful when working with FASTA trace files . Scripts provided: * fasta2frag: fragmenting sequences into smaller, overlapping subsequences. Useful for simulating shotgun sequences. Can create subsequences in both directions (/default) and also paired-end sequences. * fastaselect: given a FASTA file (and possibly a FASTA quality file) and a file with names of reads, select the sequences from the input FASTA (and quality file) and writes them to an output FASTA * fastqselect: like fastaselect, only for FASTQ * fixACE4consed: Consed has a bug which incapacitates it from reading consensus tags in ACE files written by the MIRA assembler (and possibly other programs). This script massages an ACE file so that consed can read the consensus tags. drwxr-xr-x root/root 0 2015-12-04 20:33 ./ drwxr-xr-x root/root 0 2015-12-04 20:33 ./usr/ drwxr-xr-x root/root 0 2015-12-04 20:33 ./usr/bin/ -rwxr-xr-x root/root 15396 2015-12-04 20:33 ./usr/bin/fasta2frag -rwxr-xr-x root/root 1617 2015-12-04 20:33 ./usr/bin/fixACE4consed -rwxr-xr-x root/root 4904728 2015-12-04 20:33 ./usr/bin/mira lrwxrwxrwx root/root 0 2015-12-04 20:33 ./usr/bin/mirabait -> mira lrwxrwxrwx root/root 0 2015-12-04 20:33 ./usr/bin/miraconvert -> mira lrwxrwxrwx root/root 0 2015-12-04 20:33 ./usr/bin/miramem -> mira lrwxrwxrwx root/root 0 2015-12-04 20:33 ./usr/bin/miramer -> mira drwxr-xr-x root/root 0 2015-12-04 20:33 ./usr/share/ drwxr-xr-x root/root 0 2015-12-04 20:33 ./usr/share/doc/ drwxr-xr-x root/root 0 2015-12-04 20:33 ./usr/share/doc/mira-assembler/ -rw-r--r-- root/root 1384 2015-05-14 10:38 ./usr/share/doc/mira-assembler/HELP_WANTED -rw-r--r-- root/root 263 2015-05-14 10:38 ./usr/share/doc/mira-assembler/NEWS.gz -rw-r--r-- root/root 2692 2015-05-14 10:38 ./usr/share/doc/mira-assembler/README -rw-r--r-- root/root 3855 2015-05-14 10:38 ./usr/share/doc/mira-assembler/THANKS -rw-r--r-- root/root 2002 2015-12-04 20:34 ./usr/share/doc/mira-assembler/changelog.Debian.gz -rw-r--r-- root/root 2400 2013-09-12 04:58 ./usr/share/doc/mira-assembler/copyright drwxr-xr-x root/root 0 2015-12-04 20:33 ./usr/share/lintian/ drwxr-xr-x root/root 0 2015-12-04 20:33 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 147 2013-09-26 11:26 ./usr/share/lintian/overrides/mira-assembler drwxr-xr-x root/root 0 2015-12-04 20:33 ./usr/share/man/ drwxr-xr-x root/root 0 2015-12-04 20:33 ./usr/share/man/man1/ -rw-r--r-- root/root 3198 2015-12-04 20:33 ./usr/share/man/man1/convert_project.1.gz -rw-r--r-- root/root 1257 2015-12-04 20:33 ./usr/share/man/man1/fasta2frag.1.gz -rw-r--r-- root/root 847 2015-12-04 20:33 ./usr/share/man/man1/fastaselect.1.gz -rw-r--r-- root/root 916 2015-12-04 20:33 ./usr/share/man/man1/fastatool.1.gz -rw-r--r-- root/root 847 2015-12-04 20:33 ./usr/share/man/man1/fastqselect.1.gz -rw-r--r-- root/root 681 2015-12-04 20:33 ./usr/share/man/man1/fixACE4consed.1.gz -rw-r--r-- root/root 1026 2015-12-04 20:33 ./usr/share/man/man1/mira.1.gz -rw-r--r-- root/root 1084 2015-12-04 20:33 ./usr/share/man/man1/miraSearchESTSNPs.1.gz -rw-r--r-- root/root 876 2015-12-04 20:33 ./usr/share/man/man1/mirabait.1.gz -rw-r--r-- root/root 3250 2015-12-04 20:33 ./usr/share/man/man1/miraconvert.1.gz -rw-r--r-- root/root 673 2015-12-04 20:33 ./usr/share/man/man1/miradiff.1.gz -rw-r--r-- root/root 770 2015-12-04 20:33 ./usr/share/man/man1/miramem.1.gz -rw-r--r-- root/root 671 2015-12-04 20:33 ./usr/share/man/man1/miramer.1.gz -rw-r--r-- root/root 880 2015-12-04 20:33 ./usr/share/man/man1/scftool.1.gz drwxr-xr-x root/root 0 2015-12-04 20:33 ./usr/share/mira/ -rw-r--r-- root/root 13225 2015-12-04 20:33 ./usr/share/mira/demoparam.prm drwxr-xr-x root/root 0 2015-12-04 20:33 ./usr/share/mira/support_3rdparty_tools/ -rw-r--r-- root/root 2571 2015-12-04 20:33 ./usr/share/mira/support_3rdparty_tools/GTAGDB -rw-r--r-- root/root 735 2015-12-04 20:33 ./usr/share/mira/support_3rdparty_tools/README -rw-r--r-- root/root 58 2015-12-04 20:33 ./usr/share/mira/support_3rdparty_tools/consedrc.13.0 -rw-r--r-- root/root 762 2015-12-04 20:33 ./usr/share/mira/support_3rdparty_tools/consedtaglib.txt ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: arm64 Build-Space: 628068 Build-Time: 474 Distribution: xenial-proposed Host Architecture: arm64 Install-Time: 494 Job: mira_4.9.5-2.dsc Machine Architecture: arm64 Package: mira Package-Time: 974 Source-Version: 4.9.5-2 Space: 628068 Status: successful Version: 4.9.5-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20151204-2034 Build needed 00:16:14, 628068k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-8393487'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-8393487/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-8393487'] Unmounting chroot for build PACKAGEBUILD-8393487... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-8393487'] Removing build PACKAGEBUILD-8393487