https://launchpad.net/ubuntu/+source/microbiomeutil/20101212+dfsg1-6/+build/28047367 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos01-arm64-009 5.4.0-176-generic #196-Ubuntu SMP Fri Mar 22 16:46:20 UTC 2024 aarch64 Buildd toolchain package versions: launchpad-buildd_236~650~ubuntu20.04.1 python3-lpbuildd_236~650~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 10 Apr 23:55:48 ntpdate[1882]: adjust time server 10.211.37.1 offset -0.000419 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-28047367 --image-type chroot /home/buildd/filecache-default/59612f0fc5bae33f6226b6e60c2e882b82c04bd0 Creating target for build PACKAGEBUILD-28047367 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-28047367 Starting target for build PACKAGEBUILD-28047367 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-28047367 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-28047367 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-28047367 Updating target for build PACKAGEBUILD-28047367 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [89.7 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main armhf Packages [1325 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe armhf Packages [14.9 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6071 kB] Get:9 http://ftpmaster.internal/ubuntu noble-updates/universe armhf Packages [2880 B] Get:10 http://ftpmaster.internal/ubuntu noble-updates/universe Translation-en [948 B] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main armhf Packages [322 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [139 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf Packages [663 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [284 kB] Fetched 24.8 MB in 3s (7737 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libnsl-dev libtirpc-dev libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libgnutls30* libhogweed6* libnettle8* libnpth0* libperl5.36* libpng16-16* libreadline8* libssl3* libtirpc3* usrmerge* The following NEW packages will be installed: cpp-13-arm-linux-gnueabihf cpp-arm-linux-gnueabihf g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf gcc-14-base gcc-arm-linux-gnueabihf libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhogweed6t64 libnettle8t64 libnpth0t64 libperl5.38t64 libpng16-16t64 libreadline8t64 libssl3t64 libtirpc3t64 libunistring5 perl-modules-5.38 The following packages will be upgraded: advancecomp apt apt-utils base-files base-passwd bash bash-completion binutils binutils-arm-linux-gnueabihf binutils-common bsdextrautils bsdutils bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-13 gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgmp10 libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgssapi-krb5-2 libidn2-0 libip4tc2 libisl23 libjansson4 libjson-c5 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblockfile-bin liblockfile1 liblz4-1 liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libproc2-0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtasn1-6 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login logsave lto-disabled-list make mawk mount ncurses-base ncurses-bin openssl optipng passwd patch perl perl-base pinentry-curses procps psmisc readline-common rpcsvc-proto sed sensible-utils systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 170 upgraded, 23 newly installed, 15 to remove and 0 not upgraded. Need to get 98.8 MB of archives. After this operation, 24.6 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main armhf libnsl-dev armhf 1.3.0-3build3 [66.2 kB] Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcrypt-dev armhf 1:4.4.36-4build1 [120 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main armhf libc6-dev armhf 2.39-0ubuntu8 [1352 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main armhf libc-dev-bin armhf 2.39-0ubuntu8 [19.1 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main armhf libtirpc-common all 1.3.4+ds-1.1build1 [8094 B] Get:7 http://ftpmaster.internal/ubuntu noble/main armhf libtirpc-dev armhf 1.3.4+ds-1.1build1 [184 kB] Get:8 http://ftpmaster.internal/ubuntu noble/universe armhf libnss-nisplus armhf 1.3-5build1 [20.1 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main armhf libnsl2 armhf 1.3.0-3build3 [36.5 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main armhf libgssapi-krb5-2 armhf 1.20.1-6ubuntu2 [119 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main armhf libkrb5-3 armhf 1.20.1-6ubuntu2 [321 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main armhf libk5crypto3 armhf 1.20.1-6ubuntu2 [78.6 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main armhf libkrb5support0 armhf 1.20.1-6ubuntu2 [31.4 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libacl1 armhf 2.3.2-1build1 [15.1 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main armhf libapparmor1 armhf 4.0.0-beta3-0ubuntu3 [45.1 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main armhf libaudit-common all 1:3.1.2-2.1build1 [5736 B] Get:17 http://ftpmaster.internal/ubuntu noble/main armhf libcap-ng0 armhf 0.8.4-2build2 [13.6 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main armhf libaudit1 armhf 1:3.1.2-2.1build1 [44.4 kB] Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblkid1 armhf 2.39.3-9ubuntu5 [160 kB] Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcap2 armhf 1:2.66-5ubuntu2 [25.8 kB] Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcrypt1 armhf 1:4.4.36-4build1 [92.6 kB] Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgpg-error-l10n all 1.47-3build2 [8064 B] Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgpg-error0 armhf 1.47-3build2 [61.6 kB] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgcrypt20 armhf 1.10.3-2build1 [454 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main armhf liblzma5 armhf 5.6.1+really5.4.5-1 [111 kB] Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libzstd1 armhf 1.5.5+dfsg2-2build1 [265 kB] Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkmod2 armhf 31+20240202-2ubuntu6 [45.0 kB] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblz4-1 armhf 1.9.4-1build1 [58.0 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpcre2-8-0 armhf 10.42-4ubuntu2 [198 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main armhf libselinux1 armhf 3.5-2ubuntu2 [70.9 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmount1 armhf 2.39.3-9ubuntu5 [171 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main armhf libtext-iconv-perl armhf 1.7-8build3 [12.7 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main armhf libtext-charwidth-perl armhf 0.04-11build3 [8992 B] Get:34 http://ftpmaster.internal/ubuntu noble/main armhf perl-modules-5.38 all 5.38.2-3.2build2 [3110 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-6build1 [661 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main armhf libgdbm6t64 armhf 1.23-5.1build1 [30.3 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main armhf libgdbm-compat4t64 armhf 1.23-5.1build1 [6216 B] Get:38 http://ftpmaster.internal/ubuntu noble/main armhf libperl5.38t64 armhf 5.38.2-3.2build2 [4109 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main armhf perl armhf 5.38.2-3.2build2 [231 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main armhf perl-base armhf 5.38.2-3.2build2 [1671 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main armhf liblocale-gettext-perl armhf 1.07-6ubuntu5 [15.1 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main armhf libc6 armhf 2.39-0ubuntu8 [2828 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main armhf libc-bin armhf 2.39-0ubuntu8 [530 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main armhf openssl armhf 3.0.13-0ubuntu3 [974 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main armhf libsystemd-shared armhf 255.4-1ubuntu7 [2010 kB] Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcryptsetup12 armhf 2:2.7.0-1ubuntu4 [238 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main armhf libssl3t64 armhf 3.0.13-0ubuntu3 [1558 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main armhf systemd-dev all 255.4-1ubuntu7 [104 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main armhf systemd-sysv armhf 255.4-1ubuntu7 [11.9 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main armhf systemd armhf 255.4-1ubuntu7 [3502 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main armhf libsystemd0 armhf 255.4-1ubuntu7 [411 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main armhf libpam-modules-bin armhf 1.5.3-5ubuntu4 [47.1 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main armhf libpam-modules armhf 1.5.3-5ubuntu4 [260 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main armhf libapt-pkg6.0t64 armhf 2.7.14build2 [986 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main armhf libnettle8t64 armhf 3.9.1-2.2build1 [187 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main armhf libhogweed6t64 armhf 3.9.1-2.2build1 [187 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libp11-kit0 armhf 0.25.3-4ubuntu2 [258 kB] Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libunistring5 armhf 1.1-2build1 [513 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main armhf libgnutls30t64 armhf 3.8.3-1.1ubuntu3 [947 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main armhf apt armhf 2.7.14build2 [1368 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main armhf apt-utils armhf 2.7.14build2 [210 kB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bzip2 armhf 1.0.8-5.1 [33.5 kB] Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbz2-1.0 armhf 1.0.8-5.1 [31.1 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main armhf zlib1g armhf 1:1.3.dfsg-3.1ubuntu2 [49.2 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main armhf debconf-i18n all 1.5.86 [205 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main armhf debconf all 1.5.86 [124 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main armhf libpam0g armhf 1.5.3-5ubuntu4 [62.0 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main armhf libseccomp2 armhf 2.5.5-1ubuntu3 [49.5 kB] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libargon2-1 armhf 0~20190702+dfsg-4build1 [22.6 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main armhf libudev1 armhf 255.4-1ubuntu7 [166 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main armhf libdevmapper1.02.1 armhf 2:1.02.185-3ubuntu3 [135 kB] Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjson-c5 armhf 0.17-1build1 [31.3 kB] Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libuuid1 armhf 2.39.3-9ubuntu5 [34.6 kB] Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfdisk1 armhf 2.39.3-9ubuntu5 [196 kB] Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main armhf mount armhf 2.39.3-9ubuntu5 [133 kB] Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcom-err2 armhf 1.47.0-2.4~exp1ubuntu4 [21.9 kB] Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkeyutils1 armhf 1.6.3-3build1 [8236 B] Get:78 http://ftpmaster.internal/ubuntu noble/main armhf libtirpc3t64 armhf 1.3.4+ds-1.1build1 [73.3 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main armhf linux-libc-dev armhf 6.8.0-22.22 [1555 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main armhf gcc-14-base armhf 14-20240330-1ubuntu2 [47.4 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main armhf libgcc-s1 armhf 14-20240330-1ubuntu2 [41.5 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main armhf base-files armhf 13ubuntu9 [73.4 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main armhf debianutils armhf 5.17build1 [89.0 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main armhf bash armhf 5.2.21-2ubuntu4 [668 kB] Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bsdutils armhf 1:2.39.3-9ubuntu5 [102 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main armhf coreutils armhf 9.4-3ubuntu6 [1280 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main armhf libstdc++6 armhf 14-20240330-1ubuntu2 [714 kB] Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxxhash0 armhf 0.8.2-2build1 [31.5 kB] Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgmp10 armhf 2:6.3.0+dfsg-2ubuntu5 [210 kB] Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libffi8 armhf 3.4.6-1build1 [21.2 kB] Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libidn2-0 armhf 2.3.7-2build1 [96.2 kB] Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtasn1-6 armhf 4.19.0-3build1 [37.2 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main armhf libdebconfclient0 armhf 0.271ubuntu3 [10.9 kB] Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main armhf base-passwd armhf 3.6.3build1 [50.9 kB] Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libassuan0 armhf 2.5.6-1build1 [31.3 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main armhf libsqlite3-0 armhf 3.45.1-1ubuntu2 [590 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main armhf gpg armhf 2.4.4-2ubuntu17 [524 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main armhf gpg-agent armhf 2.4.4-2ubuntu17 [235 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main armhf gpgconf armhf 2.4.4-2ubuntu17 [115 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main armhf readline-common all 8.2-4build1 [56.5 kB] Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libncursesw6 armhf 6.4+20240113-1ubuntu2 [119 kB] Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtinfo6 armhf 6.4+20240113-1ubuntu2 [90.8 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main armhf libreadline8t64 armhf 8.2-4build1 [129 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main armhf pinentry-curses armhf 1.2.1-3ubuntu5 [36.7 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main armhf init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main armhf libnpth0t64 armhf 1.6-3.1build1 [6998 B] Get:107 http://ftpmaster.internal/ubuntu noble/main armhf gpgv armhf 2.4.4-2ubuntu17 [224 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main armhf ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:109 http://ftpmaster.internal/ubuntu noble-proposed/main armhf tar armhf 1.35+dfsg-3build1 [236 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main armhf dpkg armhf 1.22.6ubuntu6 [1230 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main armhf dash armhf 0.5.12-6ubuntu5 [80.8 kB] Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main armhf diffutils armhf 1:3.10-1build1 [167 kB] Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main armhf findutils armhf 4.9.0-5build1 [293 kB] Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main armhf grep armhf 3.11-4build1 [157 kB] Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gzip armhf 1.12-1ubuntu3 [95.8 kB] Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main armhf hostname armhf 3.23+nmu2ubuntu2 [10.4 kB] Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main armhf login armhf 1:4.13+dfsg1-4ubuntu3 [200 kB] Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ncurses-bin armhf 6.4+20240113-1ubuntu2 [178 kB] Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main armhf sed armhf 4.9-2build1 [190 kB] Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main armhf util-linux armhf 2.39.3-9ubuntu5 [1216 kB] Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ncurses-base all 6.4+20240113-1ubuntu2 [25.5 kB] Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main armhf sysvinit-utils armhf 3.08-6ubuntu3 [33.8 kB] Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main armhf logsave armhf 1.47.0-2.4~exp1ubuntu4 [22.0 kB] Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libext2fs2t64 armhf 1.47.0-2.4~exp1ubuntu4 [202 kB] Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main armhf e2fsprogs armhf 1.47.0-2.4~exp1ubuntu4 [571 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main armhf optipng armhf 0.7.8+ds-1build2 [109 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main armhf libpng16-16t64 armhf 1.6.43-5build1 [166 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main armhf init armhf 1.66ubuntu1 [6186 B] Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsmartcols1 armhf 2.39.3-9ubuntu5 [117 kB] Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main armhf uuid-runtime armhf 2.39.3-9ubuntu5 [41.8 kB] Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libattr1 armhf 1:2.5.2-1build1 [10.2 kB] Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmd0 armhf 1.1.0-2build1 [23.0 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main armhf libpam-runtime all 1.5.3-5ubuntu4 [40.8 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main armhf libsemanage-common all 3.5-1build5 [10.1 kB] Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsepol2 armhf 3.5-2build1 [263 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main armhf libsemanage2 armhf 3.5-1build5 [84.5 kB] Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main armhf passwd armhf 1:4.13+dfsg1-4ubuntu3 [817 kB] Get:138 http://ftpmaster.internal/ubuntu noble/main armhf libproc2-0 armhf 2:4.0.4-4ubuntu3 [49.0 kB] Get:139 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libss2 armhf 1.47.0-2.4~exp1ubuntu4 [14.7 kB] Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main armhf mawk armhf 1.3.4.20240123-1build1 [115 kB] Get:141 http://ftpmaster.internal/ubuntu noble/main armhf procps armhf 2:4.0.4-4ubuntu3 [700 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main armhf sensible-utils all 0.0.22 [22.5 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main armhf ca-certificates all 20240203 [159 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main armhf krb5-locales all 1.20.1-6ubuntu2 [13.8 kB] Get:145 http://ftpmaster.internal/ubuntu noble-proposed/main armhf tzdata all 2024a-2ubuntu1 [273 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main armhf bash-completion all 1:2.11-8 [180 kB] Get:147 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bsdextrautils armhf 2.39.3-9ubuntu5 [78.8 kB] Get:148 http://ftpmaster.internal/ubuntu noble/main armhf libgpm2 armhf 1.20.7-11 [13.6 kB] Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libip4tc2 armhf 1.8.10-3ubuntu2 [21.3 kB] Get:150 http://ftpmaster.internal/ubuntu noble/main armhf libjansson4 armhf 2.14-2build2 [28.2 kB] Get:151 http://ftpmaster.internal/ubuntu noble/main armhf psmisc armhf 23.7-1build1 [176 kB] Get:152 http://ftpmaster.internal/ubuntu noble/main armhf xz-utils armhf 5.6.1+really5.4.5-1 [267 kB] Get:153 http://ftpmaster.internal/ubuntu noble/main armhf advancecomp armhf 2.5-1build1 [198 kB] Get:154 http://ftpmaster.internal/ubuntu noble/main armhf libctf0 armhf 2.42-4ubuntu2 [87.7 kB] Get:155 http://ftpmaster.internal/ubuntu noble/main armhf libctf-nobfd0 armhf 2.42-4ubuntu2 [88.0 kB] Get:156 http://ftpmaster.internal/ubuntu noble/main armhf binutils-arm-linux-gnueabihf armhf 2.42-4ubuntu2 [2925 kB] Get:157 http://ftpmaster.internal/ubuntu noble/main armhf libbinutils armhf 2.42-4ubuntu2 [460 kB] Get:158 http://ftpmaster.internal/ubuntu noble/main armhf binutils armhf 2.42-4ubuntu2 [3072 B] Get:159 http://ftpmaster.internal/ubuntu noble/main armhf binutils-common armhf 2.42-4ubuntu2 [217 kB] Get:160 http://ftpmaster.internal/ubuntu noble/main armhf libsframe1 armhf 2.42-4ubuntu2 [13.1 kB] Get:161 http://ftpmaster.internal/ubuntu noble/main armhf libubsan1 armhf 14-20240330-1ubuntu2 [1153 kB] Get:162 http://ftpmaster.internal/ubuntu noble/main armhf libgomp1 armhf 14-20240330-1ubuntu2 [125 kB] Get:163 http://ftpmaster.internal/ubuntu noble/main armhf libatomic1 armhf 14-20240330-1ubuntu2 [7846 B] Get:164 http://ftpmaster.internal/ubuntu noble/main armhf libasan8 armhf 14-20240330-1ubuntu2 [2940 kB] Get:165 http://ftpmaster.internal/ubuntu noble/main armhf g++-13 armhf 13.2.0-23ubuntu3 [14.5 kB] Get:166 http://ftpmaster.internal/ubuntu noble/main armhf gcc-13 armhf 13.2.0-23ubuntu3 [450 kB] Get:167 http://ftpmaster.internal/ubuntu noble/main armhf libstdc++-13-dev armhf 13.2.0-23ubuntu3 [2455 kB] Get:168 http://ftpmaster.internal/ubuntu noble/main armhf libgcc-13-dev armhf 13.2.0-23ubuntu3 [899 kB] Get:169 http://ftpmaster.internal/ubuntu noble/main armhf libcc1-0 armhf 14-20240330-1ubuntu2 [39.1 kB] Get:170 http://ftpmaster.internal/ubuntu noble/main armhf cpp-13 armhf 13.2.0-23ubuntu3 [1034 B] Get:171 http://ftpmaster.internal/ubuntu noble/main armhf gcc-13-base armhf 13.2.0-23ubuntu3 [48.6 kB] Get:172 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libisl23 armhf 0.26-3build1 [544 kB] Get:173 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmpfr6 armhf 4.2.1-1build1 [229 kB] Get:174 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmpc3 armhf 1.3.1-1build1 [46.7 kB] Get:175 http://ftpmaster.internal/ubuntu noble/main armhf gcc-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu3 [16.8 MB] Get:176 http://ftpmaster.internal/ubuntu noble/main armhf g++-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu3 [9939 kB] Get:177 http://ftpmaster.internal/ubuntu noble/main armhf cpp-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu3 [8759 kB] Get:178 http://ftpmaster.internal/ubuntu noble-proposed/main armhf g++ armhf 4:13.2.0-7ubuntu2 [1084 B] Get:179 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc armhf 4:13.2.0-7ubuntu2 [5018 B] Get:180 http://ftpmaster.internal/ubuntu noble-proposed/main armhf cpp armhf 4:13.2.0-7ubuntu2 [22.4 kB] Get:181 http://ftpmaster.internal/ubuntu noble-proposed/main armhf cpp-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu2 [5410 B] Get:182 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu2 [1214 B] Get:183 http://ftpmaster.internal/ubuntu noble-proposed/main armhf g++-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu2 [964 B] Get:184 http://ftpmaster.internal/ubuntu noble/main armhf dpkg-dev all 1.22.6ubuntu6 [1074 kB] Get:185 http://ftpmaster.internal/ubuntu noble/main armhf libdpkg-perl all 1.22.6ubuntu6 [268 kB] Get:186 http://ftpmaster.internal/ubuntu noble-proposed/main armhf patch armhf 2.7.6-7build3 [110 kB] Get:187 http://ftpmaster.internal/ubuntu noble-proposed/main armhf make armhf 4.3-4.1build2 [162 kB] Get:188 http://ftpmaster.internal/ubuntu noble/main armhf lto-disabled-list all 47 [12.4 kB] Get:189 http://ftpmaster.internal/ubuntu noble/main armhf libfakeroot armhf 1.33-1 [28.7 kB] Get:190 http://ftpmaster.internal/ubuntu noble/main armhf fakeroot armhf 1.33-1 [68.6 kB] Get:191 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblockfile-bin armhf 1.17-1build3 [10.5 kB] Get:192 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblockfile1 armhf 1.17-1build3 [6208 B] Get:193 http://ftpmaster.internal/ubuntu noble-proposed/main armhf lockfile-progs armhf 0.1.19build2 [8062 B] Preconfiguring packages ... 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Unpacking systemd (255.4-1ubuntu7) over (253.5-1ubuntu6) ... dpkg: warning: unable to delete old directory '/lib/systemd/system-preset': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system-generators': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@0.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user-.slice.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/timers.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/systemd-localed.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sysinit.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sockets.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rescue.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rc-local.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/multi-user.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-fs.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-device.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/graphical.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/getty.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/network': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/journald.conf.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/modprobe.d': Directory not empty Preparing to unpack .../libsystemd0_255.4-1ubuntu7_armhf.deb ... 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Installing new version of config file /etc/security/namespace.init ... dpkg: libnettle8:armhf: dependency problems, but removing anyway as you requested: libhogweed6:armhf depends on libnettle8. libgnutls30:armhf depends on libnettle8 (>= 3.7~). (Reading database ... 14943 files and directories currently installed.) Removing libnettle8:armhf (3.9.1-2) ... dpkg: libapt-pkg6.0:armhf: dependency problems, but removing anyway as you requested: apt-utils depends on libapt-pkg6.0 (>= 2.7.3). apt depends on libapt-pkg6.0 (>= 2.7.3). Removing libapt-pkg6.0:armhf (2.7.3) ... dpkg: libgnutls30:armhf: dependency problems, but removing anyway as you requested: apt depends on libgnutls30 (>= 3.7.5). Removing libgnutls30:armhf (3.8.1-4ubuntu1) ... Selecting previously unselected package libapt-pkg6.0t64:armhf. (Reading database ... 14877 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.7.14build2_armhf.deb ... Unpacking libapt-pkg6.0t64:armhf (2.7.14build2) ... 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Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.1build1) ... Preparing to unpack .../5-linux-libc-dev_6.8.0-22.22_armhf.deb ... Unpacking linux-libc-dev:armhf (6.8.0-22.22) over (6.5.0-9.9) ... Selecting previously unselected package gcc-14-base:armhf. Preparing to unpack .../6-gcc-14-base_14-20240330-1ubuntu2_armhf.deb ... Unpacking gcc-14-base:armhf (14-20240330-1ubuntu2) ... Setting up gcc-14-base:armhf (14-20240330-1ubuntu2) ... (Reading database ... 14977 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14-20240330-1ubuntu2_armhf.deb ... Unpacking libgcc-s1:armhf (14-20240330-1ubuntu2) over (13.2.0-4ubuntu3) ... Setting up libgcc-s1:armhf (14-20240330-1ubuntu2) ... 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Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-4build1) ... Preparing to unpack .../pinentry-curses_1.2.1-3ubuntu5_armhf.deb ... Unpacking pinentry-curses (1.2.1-3ubuntu5) over (1.2.1-1ubuntu1) ... Preparing to unpack .../init-system-helpers_1.66ubuntu1_all.deb ... Unpacking init-system-helpers (1.66ubuntu1) over (1.65.2ubuntu1) ... Setting up init-system-helpers (1.66ubuntu1) ... 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Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2 to /lib/arm-linux-gnueabihf/libe2p.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2.3 to /lib/arm-linux-gnueabihf/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2 to /lib/arm-linux-gnueabihf/libext2fs.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2.4 to /lib/arm-linux-gnueabihf/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu4) ... Setting up libcom-err2:armhf (1.47.0-2.4~exp1ubuntu4) ... Setting up libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu4) ... (Reading database ... 14977 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.0-2.4~exp1ubuntu4_armhf.deb ... Unpacking e2fsprogs (1.47.0-2.4~exp1ubuntu4) over (1.47.0-2ubuntu1) ... dpkg: warning: unable to delete old directory '/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/udev': Directory not empty Preparing to unpack .../optipng_0.7.8+ds-1build2_armhf.deb ... Unpacking optipng (0.7.8+ds-1build2) over (0.7.7-2build1) ... (Reading database ... 14975 files and directories currently installed.) Removing libpng16-16:armhf (1.6.40-1) ... Selecting previously unselected package libpng16-16t64:armhf. (Reading database ... 14965 files and directories currently installed.) Preparing to unpack .../libpng16-16t64_1.6.43-5build1_armhf.deb ... Unpacking libpng16-16t64:armhf (1.6.43-5build1) ... Setting up libapparmor1:armhf (4.0.0-beta3-0ubuntu3) ... Setting up libargon2-1:armhf (0~20190702+dfsg-4build1) ... Setting up libdevmapper1.02.1:armhf (2:1.02.185-3ubuntu3) ... Setting up libjson-c5:armhf (0.17-1build1) ... Setting up libcryptsetup12:armhf (2:2.7.0-1ubuntu4) ... Setting up libfdisk1:armhf (2.39.3-9ubuntu5) ... Setting up libkmod2:armhf (31+20240202-2ubuntu6) ... Setting up libsystemd-shared:armhf (255.4-1ubuntu7) ... Setting up systemd-dev (255.4-1ubuntu7) ... Setting up mount (2.39.3-9ubuntu5) ... Setting up systemd (255.4-1ubuntu7) ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/pstore.conf ... Installing new version of config file /etc/systemd/sleep.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up systemd-sysv (255.4-1ubuntu7) ... (Reading database ... 14976 files and directories currently installed.) 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Setting up libgdbm-compat4t64:armhf (1.23-5.1build1) ... Setting up psmisc (23.7-1build1) ... Setting up libtirpc-common (1.3.4+ds-1.1build1) ... Setting up libsqlite3-0:armhf (3.45.1-1ubuntu2) ... Setting up binutils-common:armhf (2.42-4ubuntu2) ... Setting up linux-libc-dev:armhf (6.8.0-22.22) ... Setting up libctf-nobfd0:armhf (2.42-4ubuntu2) ... Setting up krb5-locales (1.20.1-6ubuntu2) ... Setting up libgomp1:armhf (14-20240330-1ubuntu2) ... Setting up bzip2 (1.0.8-5.1) ... Setting up libsframe1:armhf (2.42-4ubuntu2) ... Setting up libfakeroot:armhf (1.33-1) ... Setting up libjansson4:armhf (2.14-2build2) ... Setting up libkrb5support0:armhf (1.20.1-6ubuntu2) ... Setting up tzdata (2024a-2ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Apr 10 23:56:13 UTC 2024. Universal Time is now: Wed Apr 10 23:56:13 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.33-1) ... Setting up rpcsvc-proto (1.4.2-0ubuntu7) ... Setting up gcc-13-base:armhf (13.2.0-23ubuntu3) ... Setting up make (4.3-4.1build2) ... Setting up libmpfr6:armhf (4.2.1-1build1) ... Setting up bash-completion (1:2.11-8) ... Setting up xz-utils (5.6.1+really5.4.5-1) ... Setting up perl-modules-5.38 (5.38.2-3.2build2) ... Setting up libproc2-0:armhf (2:4.0.4-4ubuntu3) ... Setting up libpng16-16t64:armhf (1.6.43-5build1) ... Setting up libmpc3:armhf (1.3.1-1build1) ... Setting up libatomic1:armhf (14-20240330-1ubuntu2) ... Setting up patch (2.7.6-7build3) ... Setting up libss2:armhf (1.47.0-2.4~exp1ubuntu4) ... Setting up libncursesw6:armhf (6.4+20240113-1ubuntu2) ... Setting up libk5crypto3:armhf (1.20.1-6ubuntu2) ... Setting up logsave (1.47.0-2.4~exp1ubuntu4) ... Setting up libdb5.3t64:armhf (5.3.28+dfsg2-6build1) ... Setting up libubsan1:armhf (14-20240330-1ubuntu2) ... Setting up advancecomp (2.5-1build1) ... Setting up sensible-utils (0.0.22) ... Setting up uuid-runtime (2.39.3-9ubuntu5) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libcrypt-dev:armhf (1:4.4.36-4build1) ... Setting up libasan8:armhf (14-20240330-1ubuntu2) ... Setting up procps (2:4.0.4-4ubuntu3) ... Installing new version of config file /etc/sysctl.conf ... Setting up mawk (1.3.4.20240123-1build1) ... Setting up libkrb5-3:armhf (1.20.1-6ubuntu2) ... Setting up liblockfile1:armhf (1.17-1build3) ... Setting up libperl5.38t64:armhf (5.38.2-3.2build2) ... Setting up libbinutils:armhf (2.42-4ubuntu2) ... Setting up libisl23:armhf (0.26-3build1) ... Setting up libc-dev-bin (2.39-0ubuntu8) ... Setting up openssl (3.0.13-0ubuntu3) ... Setting up libgpg-error-l10n (1.47-3build2) ... Setting up readline-common (8.2-4build1) ... Setting up libcc1-0:armhf (14-20240330-1ubuntu2) ... Setting up liblocale-gettext-perl (1.07-6ubuntu5) ... Setting up libctf0:armhf (2.42-4ubuntu2) ... Setting up pinentry-curses (1.2.1-3ubuntu5) ... Setting up apt-utils (2.7.14build2) ... Setting up cpp-13-arm-linux-gnueabihf (13.2.0-23ubuntu3) ... Setting up debconf-i18n (1.5.86) ... Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu4) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 14 added, 5 removed; done. Setting up perl (5.38.2-3.2build2) ... Setting up optipng (0.7.8+ds-1build2) ... Setting up lockfile-progs (0.1.19build2) ... Setting up libgssapi-krb5-2:armhf (1.20.1-6ubuntu2) ... Setting up libdpkg-perl (1.22.6ubuntu6) ... Setting up libreadline8t64:armhf (8.2-4build1) ... Setting up libgcc-13-dev:armhf (13.2.0-23ubuntu3) ... Setting up gpgconf (2.4.4-2ubuntu17) ... Setting up libc6-dev:armhf (2.39-0ubuntu8) ... Setting up binutils-arm-linux-gnueabihf (2.42-4ubuntu2) ... Setting up gpg (2.4.4-2ubuntu17) ... Setting up cpp-arm-linux-gnueabihf (4:13.2.0-7ubuntu2) ... Setting up libstdc++-13-dev:armhf (13.2.0-23ubuntu3) ... Setting up gpg-agent (2.4.4-2ubuntu17) ... Setting up cpp-13 (13.2.0-23ubuntu3) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.1build1) ... Setting up binutils (2.42-4ubuntu2) ... Setting up gcc-13-arm-linux-gnueabihf (13.2.0-23ubuntu3) ... Setting up dpkg-dev (1.22.6ubuntu6) ... Setting up libtirpc-dev:armhf (1.3.4+ds-1.1build1) ... Setting up gcc-13 (13.2.0-23ubuntu3) ... Setting up cpp (4:13.2.0-7ubuntu2) ... Setting up libnsl2:armhf (1.3.0-3build3) ... Setting up gcc-arm-linux-gnueabihf (4:13.2.0-7ubuntu2) ... Setting up g++-13-arm-linux-gnueabihf (13.2.0-23ubuntu3) ... Setting up g++-arm-linux-gnueabihf (4:13.2.0-7ubuntu2) ... Setting up g++-13 (13.2.0-23ubuntu3) ... Setting up libnss-nisplus:armhf (1.3-5build1) ... Setting up gcc (4:13.2.0-7ubuntu2) ... Setting up g++ (4:13.2.0-7ubuntu2) ... Setting up libnsl-dev:armhf (1.3.0-3build3) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... Processing triggers for debianutils (5.17build1) ... (Reading database ... 15019 files and directories currently installed.) Purging configuration files for libssl3:armhf (3.0.10-1ubuntu2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-28047367 armhf noble-proposed -c chroot:build-PACKAGEBUILD-28047367 --arch=armhf --dist=noble-proposed --nolog microbiomeutil_20101212+dfsg1-6.dsc Initiating build PACKAGEBUILD-28047367 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-176-generic #196-Ubuntu SMP Fri Mar 22 16:46:20 UTC 2024 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos01-arm64-009.buildd +==============================================================================+ | microbiomeutil 20101212+dfsg1-6 (armhf) Wed, 10 Apr 2024 23:56:16 +0000 | +==============================================================================+ Package: microbiomeutil Version: 20101212+dfsg1-6 Source Version: 20101212+dfsg1-6 Distribution: noble-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-28047367/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/microbiomeutil-ay1MdV/resolver-ByIOR6' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- microbiomeutil_20101212+dfsg1-6.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/microbiomeutil-ay1MdV/microbiomeutil-20101212+dfsg1' with '<>' I: NOTICE: Log filtering will replace 'build/microbiomeutil-ay1MdV' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cdbfasta, ncbi-blast+-legacy, debhelper, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), cdbfasta, ncbi-blast+-legacy, debhelper, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [391 B] Get:5 copy:/<>/apt_archive ./ Packages [475 B] Fetched 1823 B in 0s (94.6 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libgssapi-krb5-2 libip4tc2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblocale-gettext-perl libnsl-dev libnsl2 libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libtirpc-common libtirpc-dev libtirpc3t64 libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev cdbfasta debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1t64 libelf1t64 libexpat1 libfile-stripnondeterminism-perl libgclib3 libicu74 liblmdb0 libmagic-mgc libmagic1t64 libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libpipeline1 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types ncbi-blast+ ncbi-blast+-legacy ncbi-data netbase po-debconf python3 python3-minimal python3.12 python3.12-minimal Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.12-venv python3.12-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev cdbfasta debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1t64 libelf1t64 libexpat1 libfile-stripnondeterminism-perl libgclib3 libicu74 liblmdb0 libmagic-mgc libmagic1t64 libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libpipeline1 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types ncbi-blast+ ncbi-blast+-legacy ncbi-data netbase po-debconf python3 python3-minimal python3.12 python3.12-minimal sbuild-build-depends-main-dummy 0 upgraded, 50 newly installed, 0 to remove and 0 not upgraded. Need to get 40.7 MB of archives. After this operation, 146 MB of additional disk space will be used. 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[946 kB] Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblmdb0 armhf 0.9.31-1build1 [39.9 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main armhf libpipeline1 armhf 1.5.7-2 [26.2 kB] Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main armhf man-db armhf 2.12.0-4build2 [1202 kB] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main armhf m4 armhf 1.4.19-4build1 [235 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main armhf autoconf all 2.71-3 [339 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main armhf autotools-dev all 20220109.1 [44.9 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main armhf automake all 1:1.16.5-1.3ubuntu1 [558 kB] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main armhf autopoint all 0.21-14ubuntu2 [422 kB] Get:29 http://ftpmaster.internal/ubuntu noble/universe armhf libgclib3 armhf 0.12.7+ds-5 [134 kB] Get:30 http://ftpmaster.internal/ubuntu noble/universe armhf cdbfasta armhf 1.00+git20230710.da8f5ba+dfsg-1 [127 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main armhf libdebhelper-perl all 13.14.1ubuntu5 [89.8 kB] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtool all 2.4.7-7build1 [166 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main armhf dh-autoreconf all 20 [16.1 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main armhf libsub-override-perl all 0.10-1 [10.0 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main armhf dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:38 http://ftpmaster.internal/ubuntu noble/main armhf libdw1t64 armhf 0.190-1.1build4 [235 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main armhf debugedit armhf 1:5.0-5build2 [42.3 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main armhf dwz armhf 0.15-1build6 [116 kB] Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gettext armhf 0.21-14ubuntu2 [800 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main armhf intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main armhf po-debconf all 1.0.21+nmu1 [233 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main armhf debhelper all 13.14.1ubuntu5 [869 kB] Get:45 http://ftpmaster.internal/ubuntu noble/universe armhf libmbedcrypto7t64 armhf 2.28.8-1 [182 kB] Get:46 http://ftpmaster.internal/ubuntu noble/universe armhf libmbedx509-1t64 armhf 2.28.8-1 [43.0 kB] Get:47 http://ftpmaster.internal/ubuntu noble/universe armhf libmbedtls14t64 armhf 2.28.8-1 [77.2 kB] Get:48 http://ftpmaster.internal/ubuntu noble/universe armhf ncbi-data all 6.1.20170106+dfsg2-2 [4281 kB] Get:49 http://ftpmaster.internal/ubuntu noble/universe armhf ncbi-blast+ armhf 2.12.0+ds-4build2 [12.1 MB] Get:50 http://ftpmaster.internal/ubuntu noble/universe armhf ncbi-blast+-legacy all 2.12.0+ds-4build2 [4988 B] Preconfiguring packages ... Fetched 40.7 MB in 2s (19.0 MB/s) Selecting previously unselected package libpython3.12-minimal:armhf. (Reading database ... 15019 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.2-5ubuntu3_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.2-5ubuntu3) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.1-2build1_armhf.deb ... Unpacking libexpat1:armhf (2.6.1-2build1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.2-5ubuntu3_armhf.deb ... Unpacking python3.12-minimal (3.12.2-5ubuntu3) ... Setting up libpython3.12-minimal:armhf (3.12.2-5ubuntu3) ... Setting up libexpat1:armhf (2.6.1-2build1) ... Setting up python3.12-minimal (3.12.2-5ubuntu3) ... Selecting previously unselected package python3-minimal. (Reading database ... 15337 files and directories currently installed.) 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Setting up libuchardet0:armhf (0.0.8-1build1) ... Setting up debugedit (1:5.0-5build2) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3ubuntu3) ... Setting up libgclib3:armhf (0.12.7+ds-5) ... Setting up automake (1:1.16.5-1.3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14ubuntu2) ... Setting up libmbedx509-1t64:armhf (2.28.8-1) ... Setting up libpython3.12-stdlib:armhf (3.12.2-5ubuntu3) ... Setting up libtool (2.4.7-7build1) ... Setting up python3.12 (3.12.2-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up cdbfasta (1.00+git20230710.da8f5ba+dfsg-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libmbedtls14t64:armhf (2.28.8-1) ... Setting up groff-base (1.23.0-3build2) ... Setting up libpython3-stdlib:armhf (3.12.2-0ubuntu2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.12.2-0ubuntu2) ... Setting up man-db (2.12.0-4build2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up ncbi-blast+ (2.12.0+ds-4build2) ... Setting up ncbi-blast+-legacy (2.12.0+ds-4build2) ... Setting up debhelper (13.14.1ubuntu5) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for systemd (255.4-1ubuntu7) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-176-generic #196-Ubuntu SMP Fri Mar 22 16:46:20 UTC 2024 arm64 (armv7l) Toolchain package versions: binutils_2.42-4ubuntu2 dpkg-dev_1.22.6ubuntu6 g++-13_13.2.0-23ubuntu3 gcc-13_13.2.0-23ubuntu3 libc6-dev_2.39-0ubuntu8 libstdc++-13-dev_13.2.0-23ubuntu3 libstdc++6_14-20240330-1ubuntu2 linux-libc-dev_6.8.0-22.22 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1build1 apt_2.7.14build2 apt-utils_2.7.14build2 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu2 autotools-dev_20220109.1 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gcc_4:13.2.0-7ubuntu2 gcc-13_13.2.0-23ubuntu3 gcc-13-arm-linux-gnueabihf_13.2.0-23ubuntu3 gcc-13-base_13.2.0-23ubuntu3 gcc-14-base_14-20240330-1ubuntu2 gcc-arm-linux-gnueabihf_4:13.2.0-7ubuntu2 gettext_0.21-14ubuntu2 gettext-base_0.21-14ubuntu2 gpg_2.4.4-2ubuntu17 gpg-agent_2.4.4-2ubuntu17 gpgconf_2.4.4-2ubuntu17 gpgv_2.4.4-2ubuntu17 grep_3.11-4build1 groff-base_1.23.0-3build2 gzip_1.12-1ubuntu3 hostname_3.23+nmu2ubuntu2 init_1.66ubuntu1 init-system-helpers_1.66ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-6ubuntu2 libacl1_2.3.2-1build1 libapparmor1_4.0.0-beta3-0ubuntu3 libapt-pkg6.0t64_2.7.14build2 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-4build1 libasan8_14-20240330-1ubuntu2 libassuan0_2.5.6-1build1 libatomic1_14-20240330-1ubuntu2 libattr1_1:2.5.2-1build1 libaudit-common_1:3.1.2-2.1build1 libaudit1_1:3.1.2-2.1build1 libbinutils_2.42-4ubuntu2 libblkid1_2.39.3-9ubuntu5 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-0ubuntu8 libc-dev-bin_2.39-0ubuntu8 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Hash: SHA512 Format: 3.0 (quilt) Source: microbiomeutil Binary: microbiomeutil, chimeraslayer, nast-ier, wigeon, microbiomeutil-data Architecture: any all Version: 20101212+dfsg1-6 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille Homepage: https://microbiomeutil.sourceforge.net/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/microbiomeutil Vcs-Git: https://salsa.debian.org/med-team/microbiomeutil.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cdbfasta, ncbi-blast+-legacy, debhelper Package-List: chimeraslayer deb science optional arch=all microbiomeutil deb science optional arch=all microbiomeutil-data deb science optional arch=all nast-ier deb science optional arch=any wigeon deb science optional arch=all Checksums-Sha1: 514fd1683e42cf11b20fe3b5c78a63a1c67c1b58 1610352 microbiomeutil_20101212+dfsg1.orig.tar.xz 92e6591838ef8f4ecab720158b74a5c737054dcc 10708 microbiomeutil_20101212+dfsg1-6.debian.tar.xz Checksums-Sha256: f6e75eb1ccbaca07c862f5e548850bb87c37279678250cd36f5804d673bbd56c 1610352 microbiomeutil_20101212+dfsg1.orig.tar.xz 65d7aed0b0fa1ce4af79cf0010029b629b14c0f3b8be52290ae71b3918cfeb05 10708 microbiomeutil_20101212+dfsg1-6.debian.tar.xz Files: c77392b26d155fcfccee367dcea6c53d 1610352 microbiomeutil_20101212+dfsg1.orig.tar.xz 8b8c0d6cd75d39eb4e7900ba3135710c 10708 microbiomeutil_20101212+dfsg1-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmYWnmkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHaeA//Vc0cpnfWZE79Ex5y3LfFvaEm+0AHX/mp uEjbqDz31loX/GFrX2A+oxnmaipBF8Cr3ND/nkuPG1S4cvREhcXmqGAEIhpEhcbz cMtoCv+4Uinp8CnOnmYyDLqPhZFAUD6gDzNQWurL48P1XR2i4ftQqdPYl+03kZD4 ECq/3Jb2y6M/T6hQpFuJj90yEPt9y6vj8cvFGmfRj5DWN0xIdi9rre/SXelrsoeK /ZBK1GW/+KVznhZS0lEn1OjLsBPEiy84ybx/leccwgCHwId631u6QlNmeNYfMGsV BX+CBDb3/xc/Op2MOz2LoLewwVpzXhMHfWc0gmJrIwU4EvlDJlneiMd6whA19iAN d+TsIYUxDB7i+MNFTb9GYDOxPu71fBk4fkWRksaoMhg4I7ACljwyUIPU4i8lev1M oBBa7BITX26DfWhtr/ld1CLusRzEWM22d7k8RvmL8cec5mb35BEZhHYSgwI5JMHJ lD+fQjtUdGiCYH8b/m1ZlCarxIw3XOtIBKRWgkhcE8SasNFQyctrvIAPjIPIZNAA wr1IuVpvPmkDrnj9LdNAsKDMeLJcZVYx5HEGM00B1eZI89zH2dxzvoJII1q21WOP QeywvksXAOZi19t3UDtTiwN9lXDLsTPOStqrdpvV7V73dCzdWIqQ6Wk5jfaElP7y doLiRNon9Kk= =ITAd -----END PGP SIGNATURE----- gpgv: Signature made Wed Apr 10 14:12:57 2024 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./microbiomeutil_20101212+dfsg1-6.dsc: no acceptable signature found dpkg-source: info: extracting microbiomeutil in /<> dpkg-source: info: unpacking microbiomeutil_20101212+dfsg1.orig.tar.xz dpkg-source: info: unpacking microbiomeutil_20101212+dfsg1-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_perl_interpreter.patch dpkg-source: info: applying find_relocated_resources.patch dpkg-source: info: applying find_relocated_libraries.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying enable_tests_in_local_dir.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying implicit-function.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-28047367 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-28047367 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-28047367 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package microbiomeutil dpkg-buildpackage: info: source version 20101212+dfsg1-6 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j4 clean make[2]: Entering directory '/<>' X=`pwd`; \ for i in NAST-iEr ChimeraSlayer WigeoN RESOURCES; \ do echo '<<<' $i '>>>'; cd $X/$i; make clean; done <<< NAST-iEr >>> make[3]: Entering directory '/<>/NAST-iEr' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cd ./sample_data; make clean make[4]: Entering directory '/<>/NAST-iEr/sample_data' rm -f tmp.* make[4]: Leaving directory '/<>/NAST-iEr/sample_data' rm -f NAST-iEr make[3]: Leaving directory '/<>/NAST-iEr' <<< ChimeraSlayer >>> make[3]: Entering directory '/<>/ChimeraSlayer' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cd ./sample_data; make clean make[4]: Entering directory '/<>/ChimeraSlayer/sample_data' rm -f chims.NAST.* rm -f sample_DB.NAST.cidx rm -f sample_DB.fasta.* rm -f tmp.* rm -f formatdb.log make[4]: Leaving directory '/<>/ChimeraSlayer/sample_data' make[3]: Leaving directory '/<>/ChimeraSlayer' <<< WigeoN >>> make[3]: Entering directory '/<>/WigeoN' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cd ./sample_data; make clean make[4]: Entering directory '/<>/WigeoN/sample_data' rm -f tmp.* rm -f chims.NAST.* make[4]: Leaving directory '/<>/WigeoN/sample_data' make[3]: Leaving directory '/<>/WigeoN' <<< RESOURCES >>> make[3]: Entering directory '/<>/RESOURCES' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -f *fasta.* make[3]: Leaving directory '/<>/RESOURCES' make[2]: Leaving directory '/<>' rm -f RESOURCES/rRNA16S.gold.fasta.n* RESOURCES/*.cidx rm -f formatdb.log make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>' X=`pwd`; \ for i in NAST-iEr ChimeraSlayer WigeoN RESOURCES; \ do echo '<<<' $i '>>>'; cd $X/$i; make all; done <<< NAST-iEr >>> make[3]: Entering directory '/<>/NAST-iEr' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/microbiomeutil-20101212+dfsg1-6 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now NAST-iEr.c -o NAST-iEr make[3]: Leaving directory '/<>/NAST-iEr' <<< ChimeraSlayer >>> make[3]: Entering directory '/<>/ChimeraSlayer' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/ChimeraSlayer' <<< WigeoN >>> make[3]: Entering directory '/<>/WigeoN' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/WigeoN' <<< RESOURCES >>> make[3]: Entering directory '/<>/RESOURCES' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/RESOURCES' make[2]: Leaving directory '/<>' #Pre-make indexes for ChimeraSlayer, otherwise it tries to write them #to the non-writeable dir on first run and blows up formatdb -p F -i RESOURCES/rRNA16S.gold.fasta 2>/dev/null Building a new DB, current time: 04/10/2024 23:56:26 New DB name: /<>/RESOURCES/rRNA16S.gold.fasta New DB title: RESOURCES/rRNA16S.gold.fasta Sequence type: Nucleotide Keep MBits: T Maximum file size: 1000000000B Adding sequences from FASTA; added 5181 sequences in 0.189337 seconds. cdbfasta -C RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta 5181 entries from file RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta were indexed in file RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta.cidx make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' dh_auto_test make -j4 test make[2]: Entering directory '/<>' cd NAST-iEr; make test cd WigeoN; make test cd ChimeraSlayer; make test make[3]: Entering directory '/<>/NAST-iEr' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Entering directory '/<>/WigeoN' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cd ./sample_data; make test cd ./sample_data; make test make[3]: Entering directory '/<>/ChimeraSlayer' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cd ./sample_data; make test make[4]: Entering directory '/<>/WigeoN/sample_data' # make[4]: Entering directory '/<>/NAST-iEr/sample_data' # #*************** TESTING NAST-iEr *********************** #************* TESTING WigeoN ********************" # # ./testForUtils.pl ./runMe.sh make[4]: Entering directory '/<>/ChimeraSlayer/sample_data' # #********** TESTING Chimera Slayer *************" # ./runMe.sh ./runMe.sh Can't locate Fasta_reader.pm in @INC (you may need to install the Fasta_reader module) (@INC entries checked: /usr/lib/WigeoN/PerlLib /etc/perl /usr/local/lib/arm-linux-gnueabihf/perl/5.38.2 /usr/local/share/perl/5.38.2 /usr/lib/arm-linux-gnueabihf/perl5/5.38 /usr/share/perl5 /usr/lib/arm-linux-gnueabihf/perl-base /usr/lib/arm-linux-gnueabihf/perl/5.38 /usr/share/perl/5.38 /usr/local/lib/site_perl) at ../run_WigeoN.pl line 13. BEGIN failed--compilation aborted at ../run_WigeoN.pl line 13. make[4]: Leaving directory '/<>/WigeoN/sample_data' make[3]: Leaving directory '/<>/WigeoN' query to NAST format ../NAST-iEr template_seqs.NAST query_seq.fasta > tmp.query.NAST CMD: ../../ChimeraSlayer/ChimeraParentSelector/run_chimeraParentSelector.pl --query_NAST chims.NAST --db_NAST ../../RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta --db_FASTA ../../RESOURCES/rRNA16S.gold.fasta -n 15 -P 90 -R 1.007 > chims.NAST.CPS query and template (profile) to query NAST and template consensus NAST ../NAST-iEr -b template_seqs.NAST query_seq.fasta > tmp.both.NAST converting NAST mfasta to multi-alignment output highlighting differences ../show_malign_no_gap.pl --IGNOREGAPS tmp.both.NAST > tmp.both.NAST.malign Run via the megablast wrapper /<>/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.11314.query --db_NAST /tmp/tmp.11314.db -R 1.007 Num template seqs to align to: 2 Alignment parameters: MATCH: 5 MISMATCH: -4 GAP: -4 Highest score: 11681 make[4]: Leaving directory '/<>/NAST-iEr/sample_data' make[3]: Leaving directory '/<>/NAST-iEr' T(1)=0 s ChimeraParentSelector(chmraD24_7000004128191580_1-4580:4581-7682_S000428666) took 0 seconds /<>/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.11314.query --db_NAST /tmp/tmp.11314.db -R 1.007 T(1)=1 s ChimeraParentSelector(chmraD19_S000378387_1-5075:5076-7682_S000016146) took 1 seconds /<>/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.11314.query --db_NAST /tmp/tmp.11314.db -R 1.007 T(1)=1 s ChimeraParentSelector(chmraD12_7000004131500344_1-4694:4695-7682_S000127669) took 1 seconds /<>/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.11314.query --db_NAST /tmp/tmp.11314.db -R 1.007 T(1)=1 s ChimeraParentSelector(chmraD13_S000004801_1-4690:4691-7682_S000437365) took 1 seconds /<>/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.11314.query --db_NAST /tmp/tmp.11314.db -R 1.007 T(1)=1 s ChimeraParentSelector(chmraD9_S000437007_1-4525:4526-7682_S000437299) took 1 seconds /<>/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.11314.query --db_NAST /tmp/tmp.11314.db -R 1.007 T(1)=1 s ChimeraParentSelector(chmraD17_S000414109_1-4650:4651-7682_S000253432) took 1 seconds /<>/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.11314.query --db_NAST /tmp/tmp.11314.db -R 1.007 T(1)=1 s ChimeraParentSelector(chmraD22_7000004131502379_1-4625:4626-7682_7000004128198963) took 1 seconds /<>/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.11314.query --db_NAST /tmp/tmp.11314.db -R 1.007 T(1)=1 s ChimeraParentSelector(chmraD8_S000004272_1-3794:3795-7682_S000503167) took 1 seconds /<>/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.11314.query --db_NAST /tmp/tmp.11314.db -R 1.007 T(1)=0 s ChimeraParentSelector(chmraD11_S000436014_1-5755:5756-7682_7000004128189973) took 0 seconds /<>/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl --query_NAST /tmp/tmp.11314.query --db_NAST /tmp/tmp.11314.db -R 1.007 T(1)=1 s ChimeraParentSelector(chmraD23_S000009720_1-5056:5057-7682_S000437236) took 1 seconds CMD: ../../ChimeraSlayer/ChimeraParentSelector/CPS_to_RENAST.pl --CPS_output chims.NAST.CPS --query_NAST chims.NAST --db_NAST ../../RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta > chims.NAST.CPS_RENAST processing: ChimeraParentSelector chmraD24_7000004128191580_1-4580:4581-7682_S000428666 YES 100.00[(7000004128191580, NAST:164-4593, ECO:36-940, RawLen:876, G:90.90, L:100.00, 1.100);(S000428666, NAST:4594-6747, ECO:940-1470, RawLen:531, G:84.36, L:100.00, 1.185)] 10 entries from file chims.NAST were indexed in file chims.NAST.cidx Alignment parameters: MATCH: 5 MISMATCH: -4 GAP: -4 Highest score: 10945 processing: ChimeraParentSelector chmraD19_S000378387_1-5075:5076-7682_S000016146 YES 100.00[(S000378387, NAST:443-5077, ECO:94-1125, RawLen:1041, G:96.08, L:100.00, 1.041);(S000016146, NAST:5079-6498, ECO:1126-1424, RawLen:301, G:85.08, L:100.00, 1.175)] Alignment parameters: MATCH: 5 MISMATCH: -4 GAP: -4 Highest score: 12151 processing: ChimeraParentSelector chmraD12_7000004131500344_1-4694:4695-7682_S000127669 YES 100.00[(7000004131500344, NAST:426-4710, ECO:86-999, RawLen:914, G:96.38, L:100.00, 1.038);(S000127669, NAST:4711-6711, ECO:999-1451, RawLen:453, G:92.52, L:100.00, 1.081)] Alignment parameters: MATCH: 5 MISMATCH: -4 GAP: -4 Highest score: 12852 processing: ChimeraParentSelector chmraD13_S000004801_1-4690:4691-7682_S000437365 YES 100.00[(S000004801, NAST:455-4707, ECO:101-997, RawLen:913, G:96.34, L:100.00, 1.038);(S000437365, NAST:4708-6424, ECO:997-1382, RawLen:391, G:90.85, L:100.00, 1.101)] Alignment parameters: MATCH: 5 MISMATCH: -4 GAP: -4 Highest score: 12579 processing: ChimeraParentSelector chmraD9_S000437007_1-4525:4526-7682_S000437299 YES 100.00[(S000437007, NAST:164-4657, ECO:36-982, RawLen:903, G:96.21, L:100.00, 1.039);(S000437299, NAST:4658-6422, ECO:983-1380, RawLen:401, G:94.45, L:100.00, 1.059)] Alignment parameters: MATCH: 5 MISMATCH: -4 GAP: -4 Highest score: 13167 processing: ChimeraParentSelector chmraD17_S000414109_1-4650:4651-7682_S000253432 YES 100.00[(S000414109, NAST:153-4671, ECO:31-990, RawLen:907, G:94.16, L:100.00, 1.062);(S000253432, NAST:4673-6716, ECO:991-1453, RawLen:462, G:88.62, L:100.00, 1.128)] Alignment parameters: MATCH: 5 MISMATCH: -4 GAP: -4 Highest score: 11650 processing: ChimeraParentSelector chmraD22_7000004131502379_1-4625:4626-7682_7000004128198963 YES 100.00[(7000004131502379, NAST:489-4623, ECO:115-959, RawLen:851, G:92.66, L:100.00, 1.079);(7000004128198963, NAST:4625-6422, ECO:961-1380, RawLen:422, G:84.94, L:100.00, 1.177)] Alignment parameters: MATCH: 5 MISMATCH: -4 GAP: -4 Highest score: 11807 processing: ChimeraParentSelector chmraD8_S000004272_1-3794:3795-7682_S000503167 YES 100.00[(S000004272, NAST:162-3829, ECO:35-701, RawLen:668, G:95.64, L:100.00, 1.046);(S000503167, NAST:3831-6464, ECO:702-1405, RawLen:705, G:95.81, L:100.00, 1.044)] Alignment parameters: MATCH: 5 MISMATCH: -4 GAP: -4 Highest score: 13234 processing: ChimeraParentSelector chmraD11_S000436014_1-5755:5756-7682_7000004128189973 YES 100.00[(S000436014, NAST:428-5920, ECO:88-1237, RawLen:1122, G:97.80, L:100.00, 1.022);(7000004128189973, NAST:5921-6521, ECO:1238-1435, RawLen:200, G:91.75, L:100.00, 1.090)] Alignment parameters: MATCH: 5 MISMATCH: -4 GAP: -4 Highest score: 12609 processing: ChimeraParentSelector chmraD23_S000009720_1-5056:5057-7682_S000437236 YES 100.00[(S000009720, NAST:184-5057, ECO:47-1116, RawLen:1079, G:96.18, L:100.00, 1.040);(S000437236, NAST:5058-6474, ECO:1117-1411, RawLen:296, G:81.53, L:100.00, 1.227)] Alignment parameters: MATCH: 5 MISMATCH: -4 GAP: -4 Highest score: 11227 CMD: ../../ChimeraSlayer/ChimeraPhyloChecker/CPS_to_CPC.pl --CPS_output chims.NAST.CPS --query_NAST chims.NAST.CPS_RENAST --db_NAST ../../RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta -P 90 -R 1.007 --minBS 90 --printAlignments > chims.NAST.CPS.CPC 10 entries from file chims.NAST.CPS_RENAST were indexed in file chims.NAST.CPS_RENAST.cidx /<>/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.12034.query --db_NAST /tmp/tmp.12034.db -P 90 -R 1.007 --minBS 90 --printAlignments examined parents (7000004128191580, S000428666) or (0, 1) took 2 seconds ChimeraSlayer(chmraD24_7000004128191580_1-4580:4581-7682_S000428666) took 7 seconds /<>/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.12034.query --db_NAST /tmp/tmp.12034.db -P 90 -R 1.007 --minBS 90 --printAlignments examined parents (S000378387, S000016146) or (0, 1) took 2 seconds ChimeraSlayer(chmraD19_S000378387_1-5075:5076-7682_S000016146) took 5 seconds /<>/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.12034.query --db_NAST /tmp/tmp.12034.db -P 90 -R 1.007 --minBS 90 --printAlignments examined parents (7000004131500344, S000127669) or (0, 1) took 2 seconds ChimeraSlayer(chmraD12_7000004131500344_1-4694:4695-7682_S000127669) took 4 seconds /<>/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.12034.query --db_NAST /tmp/tmp.12034.db -P 90 -R 1.007 --minBS 90 --printAlignments examined parents (S000004801, S000437365) or (0, 1) took 3 seconds ChimeraSlayer(chmraD13_S000004801_1-4690:4691-7682_S000437365) took 6 seconds /<>/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.12034.query --db_NAST /tmp/tmp.12034.db -P 90 -R 1.007 --minBS 90 --printAlignments examined parents (S000437007, S000437299) or (0, 1) took 2 seconds ChimeraSlayer(chmraD9_S000437007_1-4525:4526-7682_S000437299) took 4 seconds /<>/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.12034.query --db_NAST /tmp/tmp.12034.db -P 90 -R 1.007 --minBS 90 --printAlignments examined parents (S000414109, S000253432) or (0, 1) took 2 seconds ChimeraSlayer(chmraD17_S000414109_1-4650:4651-7682_S000253432) took 5 seconds /<>/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.12034.query --db_NAST /tmp/tmp.12034.db -P 90 -R 1.007 --minBS 90 --printAlignments examined parents (7000004131502379, 7000004128198963) or (0, 1) took 2 seconds ChimeraSlayer(chmraD22_7000004131502379_1-4625:4626-7682_7000004128198963) took 7 seconds /<>/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.12034.query --db_NAST /tmp/tmp.12034.db -P 90 -R 1.007 --minBS 90 --printAlignments examined parents (S000503167, S000004272) or (0, 1) took 2 seconds ChimeraSlayer(chmraD8_S000004272_1-3794:3795-7682_S000503167) took 3 seconds /<>/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.12034.query --db_NAST /tmp/tmp.12034.db -P 90 -R 1.007 --minBS 90 --printAlignments examined parents (S000436014, 7000004128189973) or (0, 1) took 2 seconds ChimeraSlayer(chmraD11_S000436014_1-5755:5756-7682_7000004128189973) took 3 seconds /<>/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl --query_NAST /tmp/tmp.12034.query --db_NAST /tmp/tmp.12034.db -P 90 -R 1.007 --minBS 90 --printAlignments examined parents (S000009720, S000437236) or (0, 1) took 2 seconds ChimeraSlayer(chmraD23_S000009720_1-5056:5057-7682_S000437236) took 5 seconds CMD: ../../ChimeraSlayer/util/CS_add_taxonomy.pl < chims.NAST.CPS.CPC > chims.NAST.CPS.CPC.wTaxons CMD: ../../ChimeraSlayer/ChimeraParentSelector/CPC_to_CPS.pl --CPC_output chims.NAST.CPS.CPC --query_NAST chims.NAST.CPS_RENAST --db_NAST ../../RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta > chims.NAST.CPS.CPC.align T(1)=0 s ChimeraParentSelector(chmraD24_7000004128191580_1-4580:4581-7682_S000428666) took 0 seconds T(1)=0 s ChimeraParentSelector(chmraD19_S000378387_1-5075:5076-7682_S000016146) took 0 seconds T(1)=0 s ChimeraParentSelector(chmraD12_7000004131500344_1-4694:4695-7682_S000127669) took 0 seconds T(1)=0 s ChimeraParentSelector(chmraD13_S000004801_1-4690:4691-7682_S000437365) took 0 seconds T(1)=0 s ChimeraParentSelector(chmraD9_S000437007_1-4525:4526-7682_S000437299) took 0 seconds T(1)=0 s ChimeraParentSelector(chmraD17_S000414109_1-4650:4651-7682_S000253432) took 0 seconds T(1)=0 s ChimeraParentSelector(chmraD22_7000004131502379_1-4625:4626-7682_7000004128198963) took 0 seconds T(1)=0 s ChimeraParentSelector(chmraD8_S000004272_1-3794:3795-7682_S000503167) took 0 seconds T(1)=0 s ChimeraParentSelector(chmraD11_S000436014_1-5755:5756-7682_7000004128189973) took 0 seconds T(1)=0 s ChimeraParentSelector(chmraD23_S000009720_1-5056:5057-7682_S000437236) took 0 seconds make[4]: Leaving directory '/<>/ChimeraSlayer/sample_data' make[3]: Leaving directory '/<>/ChimeraSlayer' make[2]: Leaving directory '/<>' cd /<>/ChimeraSlayer/sample_data && /usr/bin/make clean make[2]: Entering directory '/<>/ChimeraSlayer/sample_data' rm -f chims.NAST.* rm -f sample_DB.NAST.cidx rm -f sample_DB.fasta.* rm -f tmp.* rm -f formatdb.log make[2]: Leaving directory '/<>/ChimeraSlayer/sample_data' cd /<>/NAST-iEr/sample_data && /usr/bin/make clean make[2]: Entering directory '/<>/NAST-iEr/sample_data' rm -f tmp.* make[2]: Leaving directory '/<>/NAST-iEr/sample_data' cd /<>/WigeoN/sample_data && /usr/bin/make clean make[2]: Entering directory '/<>/WigeoN/sample_data' rm -f tmp.* rm -f chims.NAST.* make[2]: Leaving directory '/<>/WigeoN/sample_data' rm -f RESOURCES/rRNA16S.gold.fasta.n* RESOURCES/*.cidx rm -f formatdb.log make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install -XMakefile -Xsample_data -XLICENSE -XNAST-iEr.c find debian -name '*.pl' -o -name '*.pm' | xargs sed -i 's|/usr/bin/env perl|/usr/bin/perl|g' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installexamples make[1]: Entering directory '/<>' dh_installexamples for mod in ChimeraSlayer NAST-iEr WigeoN ; do \ mkdir -p /<>/debian/microbiomeutil-data/usr/share/doc/microbiomeutil-data/examples/${mod} ; \ cp -a ${mod}/sample_data/* /<>/debian/microbiomeutil-data/usr/share/doc/microbiomeutil-data/examples/${mod} ; \ sed -i -e "s?../${mod}?${mod}?" \ -e "s?^.*\(/util/show_malign_no_gap.pl\)?/usr/lib/NAST-iEr\1?" \ -e "s?^.*\(/run_NAST-iEr.pl\)?/usr/lib/NAST-iEr\1?" \ -e "s?^.*\(ChimeraSlayer.pl\)?/usr/lib/ChimeraSlayer/\1?" \ -e "s?^.*\(/run_WigeoN.pl\)?/usr/lib/WigeoN\1?" \ /<>/debian/microbiomeutil-data/usr/share/doc/microbiomeutil-data/examples/${mod}/runMe.sh ; \ done sed -i '1i #!/bin/sh' /<>/debian/microbiomeutil-data/usr/share/doc/microbiomeutil-data/examples/WigeoN/runMe.sh make[1]: Leaving directory '/<>' dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian -type f -name '*.pm' -print0 | xargs -0r chmod a-x find debian -type f -name 'genus_counter.pl' -print0 | xargs -0r chmod a+x make[1]: Leaving directory '/<>' dh_missing -a dh_dwz -a dh_strip -a b3d8ea870c0203bd6ba680f673e568dc2b561e68 dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package nast-ier: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package nast-ier: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing nast-ier (in debian/nast-ier); do_strip: , oemstrip: pkgstriptranslations: processing nast-ier-dbgsym (in debian/.debhelper/nast-ier/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/nast-ier/DEBIAN/control, package nast-ier, directory debian/nast-ier Skipping microbiomeutil-data because it is not to be built pkgstripfiles: Running PNG optimization (using 4 cpus) for package nast-ier ... pkgstripfiles: No PNG files. dpkg-deb: building package 'nast-ier' in '../nast-ier_20101212+dfsg1-6_armhf.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/nast-ier/dbgsym-root/DEBIAN/control, package nast-ier-dbgsym, directory debian/.debhelper/nast-ier/dbgsym-root dpkg-deb: building package 'nast-ier-dbgsym' in 'debian/.debhelper/scratch-space/build-nast-ier/nast-ier-dbgsym_20101212+dfsg1-6_armhf.deb'. Renaming nast-ier-dbgsym_20101212+dfsg1-6_armhf.deb to nast-ier-dbgsym_20101212+dfsg1-6_armhf.ddeb dpkg-genbuildinfo --build=any -O../microbiomeutil_20101212+dfsg1-6_armhf.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../microbiomeutil_20101212+dfsg1-6_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-04-10T23:57:41Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ microbiomeutil_20101212+dfsg1-6_armhf.changes: ---------------------------------------------- Format: 1.8 Date: Wed, 10 Apr 2024 16:03:07 +0200 Source: microbiomeutil Binary: nast-ier Built-For-Profiles: noudeb Architecture: armhf Version: 20101212+dfsg1-6 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: nast-ier - NAST-based DNA alignment tool Closes: 1066532 Changes: microbiomeutil (20101212+dfsg1-6) unstable; urgency=medium . * Fix implicit declaration of function isprint Closes: #1066532 * Standards-Version: 4.7.0 (routine-update) * Use secure URI in Homepage field. * Lintian-overrides (see lintian bug #1017966) * Add DEP3 field "Forwarded: no (upstream is dead)" Checksums-Sha1: 0f6483b8451a62c95c6865f304d9ffb84d0864c5 6715 microbiomeutil_20101212+dfsg1-6_armhf.buildinfo b0316e5adf48b1d327d8d491f861238660999a1e 14318 nast-ier-dbgsym_20101212+dfsg1-6_armhf.ddeb 2d03d0d25c29d486c62bd3a54aa66522dc56a899 20136 nast-ier_20101212+dfsg1-6_armhf.deb Checksums-Sha256: 6026ee59a12ca587b19b7ece1ddc89655828beb0d297cc473ef5521d191c25d7 6715 microbiomeutil_20101212+dfsg1-6_armhf.buildinfo 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Checksums-Md5: 7866945755b7f3ec321d5c3150dc3d23 14318 nast-ier-dbgsym_20101212+dfsg1-6_armhf.ddeb 5baef60d3aebc24fa59809a54cddcd30 20136 nast-ier_20101212+dfsg1-6_armhf.deb Checksums-Sha1: b0316e5adf48b1d327d8d491f861238660999a1e 14318 nast-ier-dbgsym_20101212+dfsg1-6_armhf.ddeb 2d03d0d25c29d486c62bd3a54aa66522dc56a899 20136 nast-ier_20101212+dfsg1-6_armhf.deb Checksums-Sha256: 11ec42b859d5612a523d7399bbf9a35a41ab57b83fb3c315604b6a001e6972e1 14318 nast-ier-dbgsym_20101212+dfsg1-6_armhf.ddeb 4d8d87b1ea5cccc97d66f4ee0951eba852180c018722b51bd10a2ac50f33b5c3 20136 nast-ier_20101212+dfsg1-6_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Wed, 10 Apr 2024 23:57:41 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3ubuntu1), autopoint (= 0.21-14ubuntu2), autotools-dev (= 20220109.1), base-files (= 13ubuntu9), base-passwd (= 3.6.3build1), bash (= 5.2.21-2ubuntu4), 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2.28.8-1), libmbedx509-1t64 (= 2.28.8-1), libmd0 (= 1.1.0-2build1), libmount1 (= 2.39.3-9ubuntu5), libmpc3 (= 1.3.1-1build1), libmpfr6 (= 4.2.1-1build1), libncursesw6 (= 6.4+20240113-1ubuntu2), libpam-modules (= 1.5.3-5ubuntu4), libpam-modules-bin (= 1.5.3-5ubuntu4), libpam-runtime (= 1.5.3-5ubuntu4), libpam0g (= 1.5.3-5ubuntu4), libpcre2-8-0 (= 10.42-4ubuntu2), libperl5.38t64 (= 5.38.2-3.2build2), libpipeline1 (= 1.5.7-2), libpython3-stdlib (= 3.12.2-0ubuntu2), libpython3.12-minimal (= 3.12.2-5ubuntu3), libpython3.12-stdlib (= 3.12.2-5ubuntu3), libreadline8t64 (= 8.2-4build1), libseccomp2 (= 2.5.5-1ubuntu3), libselinux1 (= 3.5-2ubuntu2), libsframe1 (= 2.42-4ubuntu2), libsmartcols1 (= 2.39.3-9ubuntu5), libsqlite3-0 (= 3.45.1-1ubuntu2), libssl3t64 (= 3.0.13-0ubuntu3), libstdc++-13-dev (= 13.2.0-23ubuntu3), libstdc++6 (= 14-20240330-1ubuntu2), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.4-1ubuntu7), libtinfo6 (= 6.4+20240113-1ubuntu2), libtool (= 2.4.7-7build1), libubsan1 (= 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1.4.2-0ubuntu7), sed (= 4.9-2build1), sensible-utils (= 0.0.22), sysvinit-utils (= 3.08-6ubuntu3), tar (= 1.35+dfsg-3build1), tzdata (= 2024a-2ubuntu1), util-linux (= 2.39.3-9ubuntu5), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg-3.1ubuntu2) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1712757787" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ nast-ier_20101212+dfsg1-6_armhf.deb ----------------------------------- new Debian package, version 2.0. size 20136 bytes: control archive=1328 bytes. 823 bytes, 21 lines control 1533 bytes, 20 lines md5sums Package: nast-ier Source: microbiomeutil Version: 20101212+dfsg1-6 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 90 Depends: libc6 (>= 2.34), microbiomeutil-data, cdbfasta Recommends: ncbi-blast+ Section: science Priority: optional Homepage: https://microbiomeutil.sourceforge.net/ Description: NAST-based DNA alignment tool The NAST-iEr alignment utility aligns a single raw nucleotide sequence against one or more NAST formatted sequences. . The alignment algorithm involves global dynamic programming profile alignment to fixed (NAST-formatted) multiply aligned template sequences without any end-gap penalty. . NAST-iEr is part of the microbiomeutil suite. drwxr-xr-x root/root 0 2024-04-10 14:03 ./ drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/ drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/bin/ lrwxrwxrwx root/root 0 2024-04-10 14:03 ./usr/bin/nast-ier -> ../lib/NAST-iEr/run_NAST-iEr.pl drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/lib/NAST-iEr/ -rwxr-xr-x root/root 9648 2024-04-10 14:03 ./usr/lib/NAST-iEr/NAST-iEr drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/lib/NAST-iEr/PerlLib/ -rw-r--r-- root/root 2453 2024-04-10 14:03 ./usr/lib/NAST-iEr/PerlLib/CdbTools.pm -rw-r--r-- root/root 2980 2024-04-10 14:03 ./usr/lib/NAST-iEr/PerlLib/Fasta_reader.pm -rw-r--r-- root/root 10294 2024-04-10 14:03 ./usr/lib/NAST-iEr/PerlLib/Nuc_translator.pm -rw-r--r-- root/root 2059 2010-12-12 13:36 ./usr/lib/NAST-iEr/README drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/lib/NAST-iEr/iterative_refinement/ -rwxr-xr-x root/root 615 2024-04-10 14:03 ./usr/lib/NAST-iEr/iterative_refinement/compare_DBs.pl -rwxr-xr-x root/root 624 2024-04-10 14:03 ./usr/lib/NAST-iEr/iterative_refinement/iteratively_realign_db_selfsearch.pl -rwxr-xr-x root/root 411 2024-04-10 14:03 ./usr/lib/NAST-iEr/iterative_refinement/quant_differences.pl -rwxr-xr-x root/root 5375 2024-04-10 14:03 ./usr/lib/NAST-iEr/run_NAST-iEr.pl drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/lib/NAST-iEr/util/ -rwxr-xr-x root/root 1425 2024-04-10 14:03 ./usr/lib/NAST-iEr/util/apply_NAST_MASK.pl drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/lib/NAST-iEr/util/masks/ -rw-r--r-- root/root 7735 2010-12-12 13:36 ./usr/lib/NAST-iEr/util/masks/eco.prokMSA -rw-r--r-- root/root 7821 2010-12-12 13:36 ./usr/lib/NAST-iEr/util/masks/lanemask.NAST -rwxr-xr-x root/root 1179 2024-04-10 14:03 ./usr/lib/NAST-iEr/util/mfasta_remove_allGapCols.pl -rwxr-xr-x root/root 503 2024-04-10 14:03 ./usr/lib/NAST-iEr/util/mfasta_remove_gaps.pl -rwxr-xr-x root/root 2748 2024-04-10 14:03 ./usr/lib/NAST-iEr/util/show_malign_no_gap.pl -rwxr-xr-x root/root 2936 2024-04-10 14:03 ./usr/lib/NAST-iEr/util/show_malign_no_gap_no_identical_cols.pl drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/share/ drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/share/doc/nast-ier/ -rw-r--r-- root/root 2059 2010-12-12 13:36 ./usr/share/doc/nast-ier/README -rw-r--r-- root/root 940 2024-04-10 14:03 ./usr/share/doc/nast-ier/changelog.Debian.gz -rw-r--r-- root/root 1898 2024-04-10 14:03 ./usr/share/doc/nast-ier/copyright lrwxrwxrwx root/root 0 2024-04-10 14:03 ./usr/share/doc/nast-ier/examples -> ../microbiomeutil-data/examples/NAST-iEr drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/share/man/ drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/share/man/man1/ -rw-r--r-- root/root 672 2024-04-10 14:03 ./usr/share/man/man1/nast-ier.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 50188 Build-Time: 76 Distribution: noble-proposed Host Architecture: armhf Install-Time: 9 Job: microbiomeutil_20101212+dfsg1-6.dsc Machine Architecture: arm64 Package: microbiomeutil Package-Time: 85 Source-Version: 20101212+dfsg1-6 Space: 50188 Status: successful Version: 20101212+dfsg1-6 -------------------------------------------------------------------------------- Finished at 2024-04-10T23:57:41Z Build needed 00:01:25, 50188k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-28047367 Scanning for processes to kill in build PACKAGEBUILD-28047367