Ubuntu
microbiomeutil package

microbiomeutil 20101212+dfsg1-1 source package in Ubuntu

Changelog

microbiomeutil (20101212+dfsg1-1) unstable; urgency=low

  * debian/copyright: s/BSD-like/BSD-3-clause/
  * Moved debian/upstream to debian/upstream/metadata
  * cme fix dpkg-control
  * Cleanup d/rules
  * Fix build time tests and run these
  * Add doc-base file
  * d/watch: add missing repacksuffix
  * Moved packaging from SVN to Git
  * Cleaning up log files from past test runs
  * Add autopkgtest

 -- Andreas Tille <email address hidden>  Wed, 20 Jan 2016 20:15:46 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Low Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Xenial release universe misc

Downloads

File Size SHA-256 Checksum
microbiomeutil_20101212+dfsg1-1.dsc 2.3 KiB 954931e6927e9bbb3ec72bdd4a9ac5e2acd9b178735f9d8c6d932a9ee55185d5
microbiomeutil_20101212+dfsg1.orig.tar.xz 1.5 MiB f6e75eb1ccbaca07c862f5e548850bb87c37279678250cd36f5804d673bbd56c
microbiomeutil_20101212+dfsg1-1.debian.tar.xz 9.6 KiB 354adba76bb13c30d10c7b296d77ccea6822dce81f0e5876b38489b9c4987d52

Available diffs

No changes file available.

Binary packages built by this source

chimeraslayer: detects likely chimeras in PCR amplified DNA

 ChimeraSlayer is a chimeric sequence detection utility, compatible with
 near-full length Sanger sequences and shorter 454-FLX sequences (~500bp).
 .
 Chimera Slayer involves the following series of steps that operate to
 flag chimeric 16S rRNA sequences:
 .
  1. the ends of a query sequence are searched against an included
     database of reference chimera-free 16S sequences to identify potential
     parents of a chimera
  2. candidate parents of a chimera are selected as those that form a
     branched best scoring alignment to the NAST-formatted query sequence
  3. the NAST alignment of the query sequence is improved in a
     ‘chimera-aware’ profile-based NAST realignment to the selected
     reference parent sequences
  4. an evolutionary framework is used to flag query sequences found to
     exhibit greater sequence homology to an in silico chimera formed
     between any two of the selected reference parent sequences.
 .
 To run Chimera Slayer, you need NAST-formatted sequences generated by
 the nast-ier utility.
 .
 ChimeraSlayer is part of the microbiomeutil suite.

microbiomeutil: No summary available for microbiomeutil in ubuntu yakkety.

No description available for microbiomeutil in ubuntu yakkety.

microbiomeutil-data: Reference 16S sequences and NAST-alignments used by microbiomeutil tools

 Reference data for tools in the microbiomeutil package. The algorithms
 used by the tools chimeraslayer, nast-ier and wigeon are based on
 reference data which are provided by this package.

nast-ier: NAST-based DNA alignment tool

 The NAST-iEr alignment utility aligns a single raw nucleotide sequence
 against one or more NAST formatted sequences.
 .
 The alignment algorithm involves global dynamic programming profile
 alignment to fixed (NAST-formatted) multiply aligned template sequences
 without any end-gap penalty.
 .
 NAST-iEr is part of the microbiomeutil suite.

nast-ier-dbgsym: debug symbols for package nast-ier

 The NAST-iEr alignment utility aligns a single raw nucleotide sequence
 against one or more NAST formatted sequences.
 .
 The alignment algorithm involves global dynamic programming profile
 alignment to fixed (NAST-formatted) multiply aligned template sequences
 without any end-gap penalty.
 .
 NAST-iEr is part of the microbiomeutil suite.

wigeon: No summary available for wigeon in ubuntu zesty.

No description available for wigeon in ubuntu zesty.