https://launchpad.net/ubuntu/+source/libvcflib/1.0.9+dfsg1-3/+build/27041525 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos01-ppc64el-015 5.4.0-167-generic #184-Ubuntu SMP Tue Oct 31 09:21:46 UTC 2023 ppc64le Buildd toolchain package versions: launchpad-buildd_235~645~ubuntu20.04.1 python3-lpbuildd_235~645~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 3 Dec 17:11:52 ntpdate[2016]: adjust time server 10.211.37.1 offset -0.007684 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-27041525 --image-type chroot /home/buildd/filecache-default/d42c54d6e204d222772cc047f01d282d9c30a0e5 Creating target for build PACKAGEBUILD-27041525 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-27041525 Starting target for build PACKAGEBUILD-27041525 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-27041525 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27041525 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-27041525 Updating target for build PACKAGEBUILD-27041525 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [240 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el Packages [1352 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [517 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe ppc64el Packages [15.1 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6027 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [185 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [62.3 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [1426 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [426 kB] Fetched 25.6 MB in 16s (1619 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libunistring2 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libunistring5 The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-common binutils-powerpc64le-linux-gnu bsdextrautils bsdutils coreutils cpp cpp-13 debianutils diffutils dpkg dpkg-dev fakeroot g++ g++-13 gcc gcc-13 gcc-13-base grep krb5-locales libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error-l10n libgpg-error0 libgssapi-krb5-2 libidn2-0 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 liblsan0 liblzma5 libmount1 libncursesw6 libnsl-dev libnsl2 libpam-modules libpam-modules-bin libpam-runtime libpam0g libperl5.36 libpng16-16 libproc2-0 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev lto-disabled-list mawk mount ncurses-base ncurses-bin openssl optipng perl perl-base perl-modules-5.36 pinentry-curses procps readline-common systemd systemd-dev systemd-sysv sysvinit-utils ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 125 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 105 MB of archives. After this operation, 2529 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el libnsl-dev ppc64el 1.3.0-3 [79.2 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6-dev ppc64el 2.38-3ubuntu1 [2083 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-dev-bin ppc64el 2.38-3ubuntu1 [21.0 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el libtirpc-common all 1.3.4+ds-1 [7920 B] Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libtirpc-dev ppc64el 1.3.4+ds-1 [222 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el libgssapi-krb5-2 ppc64el 1.20.1-5build1 [180 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el libkrb5-3 ppc64el 1.20.1-5build1 [426 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libk5crypto3 ppc64el 1.20.1-5build1 [106 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el libkrb5support0 ppc64el 1.20.1-5build1 [37.5 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el libssl3 ppc64el 3.0.10-1ubuntu3 [2130 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el libtirpc3 ppc64el 1.3.4+ds-1 [98.9 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el libnsl2 ppc64el 1.3.0-3 [47.3 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-libc-dev ppc64el 6.6.0-14.14 [1569 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcc1-0 ppc64el 13.2.0-8ubuntu1 [48.7 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libctf0 ppc64el 2.41.50.20231202-1ubuntu1 [111 kB] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libctf-nobfd0 ppc64el 2.41.50.20231202-1ubuntu1 [111 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.41.50.20231202-1ubuntu1 [2495 kB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libbinutils ppc64el 2.41.50.20231202-1ubuntu1 [699 kB] Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el binutils-common ppc64el 2.41.50.20231202-1ubuntu1 [230 kB] Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el binutils ppc64el 2.41.50.20231202-1ubuntu1 [3094 B] Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gcc-13-base ppc64el 13.2.0-8ubuntu1 [44.8 kB] Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgcc-s1 ppc64el 13.2.0-8ubuntu1 [38.4 kB] Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgomp1 ppc64el 13.2.0-8ubuntu1 [155 kB] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libitm1 ppc64el 13.2.0-8ubuntu1 [32.4 kB] Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libatomic1 ppc64el 13.2.0-8ubuntu1 [10.6 kB] Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libasan8 ppc64el 13.2.0-8ubuntu1 [2839 kB] Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el liblsan0 ppc64el 13.2.0-8ubuntu1 [1233 kB] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtsan2 ppc64el 13.2.0-8ubuntu1 [2657 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libubsan1 ppc64el 13.2.0-8ubuntu1 [1134 kB] Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libquadmath0 ppc64el 13.2.0-8ubuntu1 [156 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el g++-13 ppc64el 13.2.0-8ubuntu1 [11.2 MB] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libstdc++-13-dev ppc64el 13.2.0-8ubuntu1 [2477 kB] Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgcc-13-dev ppc64el 13.2.0-8ubuntu1 [1578 kB] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gcc-13 ppc64el 13.2.0-8ubuntu1 [19.5 MB] Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el cpp-13 ppc64el 13.2.0-8ubuntu1 [9742 kB] Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libstdc++6 ppc64el 13.2.0-8ubuntu1 [871 kB] Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el zlib1g ppc64el 1:1.3.dfsg-3ubuntu1 [72.1 kB] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsframe1 ppc64el 2.41.50.20231202-1ubuntu1 [15.6 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el libzstd1 ppc64el 1.5.5+dfsg2-2 [390 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6 ppc64el 2.38-3ubuntu1 [3245 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el base-files ppc64el 13ubuntu5 [73.9 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el debianutils ppc64el 5.14 [89.5 kB] Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bash ppc64el 5.2.21-2ubuntu1 [959 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el bsdutils ppc64el 1:2.39.2-6ubuntu1 [97.0 kB] Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el coreutils ppc64el 9.4-2ubuntu1 [1535 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main ppc64el diffutils ppc64el 1:3.10-1 [200 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main ppc64el liblzma5 ppc64el 5.4.5-0.1 [158 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el libapparmor1 ppc64el 4.0.0~alpha2-0ubuntu6 [52.8 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el libaudit-common all 1:3.1.1-1build1 [5510 B] Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el libcap-ng0 ppc64el 0.8.3-1build3 [16.2 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main ppc64el libaudit1 ppc64el 1:3.1.1-1build1 [51.4 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main ppc64el libblkid1 ppc64el 2.39.2-6ubuntu1 [152 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main ppc64el libselinux1 ppc64el 3.5-1build2 [97.3 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main ppc64el libmount1 ppc64el 2.39.2-6ubuntu1 [166 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main ppc64el libpam0g ppc64el 1.5.2-9.1ubuntu1 [72.5 kB] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libseccomp2 ppc64el 2.5.4-2ubuntu1 [61.9 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main ppc64el systemd-sysv ppc64el 253.5-1ubuntu7 [11.5 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main ppc64el systemd-dev all 253.5-1ubuntu7 [78.5 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main ppc64el systemd ppc64el 253.5-1ubuntu7 [3271 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main ppc64el libsystemd-shared ppc64el 253.5-1ubuntu7 [2086 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main ppc64el libargon2-1 ppc64el 0~20190702+dfsg-4 [27.1 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main ppc64el libuuid1 ppc64el 2.39.2-6ubuntu1 [37.8 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main ppc64el libcryptsetup12 ppc64el 2:2.6.1-5ubuntu1 [347 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main ppc64el libfdisk1 ppc64el 2.39.2-6ubuntu1 [168 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main ppc64el mount ppc64el 2.39.2-6ubuntu1 [124 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main ppc64el libsystemd0 ppc64el 253.5-1ubuntu7 [490 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main ppc64el libudev1 ppc64el 253.5-1ubuntu7 [183 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main ppc64el libxxhash0 ppc64el 0.8.2-2 [30.4 kB] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libapt-pkg6.0 ppc64el 2.7.7 [1005 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main ppc64el dpkg ppc64el 1.22.1ubuntu3 [1465 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main ppc64el grep ppc64el 3.11-3 [172 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main ppc64el ncurses-bin ppc64el 6.4+20231121-1build1 [200 kB] Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libperl5.36 ppc64el 5.36.0-10ubuntu1 [4849 kB] Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl ppc64el 5.36.0-10ubuntu1 [235 kB] Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl-base ppc64el 5.36.0-10ubuntu1 [1847 kB] Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl-modules-5.36 all 5.36.0-10ubuntu1 [2984 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main ppc64el libdb5.3 ppc64el 5.3.28+dfsg2-4 [853 kB] Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgdbm6 ppc64el 1.23-5 [40.6 kB] Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgdbm-compat4 ppc64el 1.23-5 [6620 B] Get:80 http://ftpmaster.internal/ubuntu noble/main ppc64el util-linux ppc64el 2.39.2-6ubuntu1 [1184 kB] Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdebconfclient0 ppc64el 0.271ubuntu1 [11.1 kB] Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el base-passwd ppc64el 3.6.3 [52.5 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-bin ppc64el 2.38-3ubuntu1 [745 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main ppc64el ncurses-base all 6.4+20231121-1build1 [25.2 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main ppc64el sysvinit-utils ppc64el 3.08-3ubuntu1 [35.2 kB] Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el apt ppc64el 2.7.7 [1392 kB] Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el apt-utils ppc64el 2.7.7 [224 kB] Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main ppc64el libunistring5 ppc64el 1.1-2 [556 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main ppc64el libidn2-0 ppc64el 2.3.4-1build1 [67.8 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main ppc64el libgnutls30 ppc64el 3.8.1-4ubuntu6 [1043 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main ppc64el libpam-modules-bin ppc64el 1.5.2-9.1ubuntu1 [52.3 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main ppc64el libpam-modules ppc64el 1.5.2-9.1ubuntu1 [325 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main ppc64el libsmartcols1 ppc64el 2.39.2-6ubuntu1 [77.1 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main ppc64el uuid-runtime ppc64el 2.39.2-6ubuntu1 [33.4 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main ppc64el libgpg-error-l10n all 1.47-3 [7936 B] Get:97 http://ftpmaster.internal/ubuntu noble/main ppc64el libgpg-error0 ppc64el 1.47-3 [86.8 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main ppc64el libpam-runtime all 1.5.2-9.1ubuntu1 [41.5 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main ppc64el libsemanage-common all 3.5-1build1 [9982 B] Get:100 http://ftpmaster.internal/ubuntu noble/main ppc64el libsepol2 ppc64el 3.5-2 [386 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main ppc64el libsemanage2 ppc64el 3.5-1build1 [113 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main ppc64el libncursesw6 ppc64el 6.4+20231121-1build1 [182 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main ppc64el libtinfo6 ppc64el 6.4+20231121-1build1 [130 kB] Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libffi8 ppc64el 3.4.4-2 [27.3 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main ppc64el libproc2-0 ppc64el 2:4.0.4-2ubuntu1 [66.6 kB] Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el mawk ppc64el 1.3.4.20231126-1 [137 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main ppc64el procps ppc64el 2:4.0.4-2ubuntu1 [733 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main ppc64el krb5-locales all 1.20.1-5build1 [13.7 kB] Get:109 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el readline-common all 8.2-3 [56.2 kB] Get:110 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libreadline8 ppc64el 8.2-3 [177 kB] Get:111 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsqlite3-0 ppc64el 3.44.2-1 [788 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main ppc64el openssl ppc64el 3.0.10-1ubuntu3 [1208 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main ppc64el bash-completion all 1:2.11-8 [180 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main ppc64el bsdextrautils ppc64el 2.39.2-6ubuntu1 [78.2 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main ppc64el libpng16-16 ppc64el 1.6.40-2 [239 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main ppc64el xz-utils ppc64el 5.4.5-0.1 [275 kB] Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el g++ ppc64el 4:13.2.0-2ubuntu1 [1110 B] Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gcc ppc64el 4:13.2.0-2ubuntu1 [5212 B] Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el cpp ppc64el 4:13.2.0-2ubuntu1 [29.0 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main ppc64el dpkg-dev all 1.22.1ubuntu3 [1148 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main ppc64el libdpkg-perl all 1.22.1ubuntu3 [286 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main ppc64el lto-disabled-list all 44 [12.4 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main ppc64el libfakeroot ppc64el 1.32.2-1 [34.0 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main ppc64el fakeroot ppc64el 1.32.2-1 [69.0 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main ppc64el optipng ppc64el 0.7.7-3 [90.2 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main ppc64el pinentry-curses ppc64el 1.2.1-3ubuntu1 [38.2 kB] Preconfiguring packages ... 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Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up cpp (4:13.2.0-2ubuntu1) ... Setting up libasan8:ppc64el (13.2.0-8ubuntu1) ... Setting up procps (2:4.0.4-2ubuntu1) ... Installing new version of config file /etc/sysctl.conf ... Setting up libcryptsetup12:ppc64el (2:2.6.1-5ubuntu1) ... Setting up mawk (1.3.4.20231126-1) ... Setting up libkrb5-3:ppc64el (1.20.1-5build1) ... Setting up libtsan2:ppc64el (13.2.0-8ubuntu1) ... Setting up libbinutils:ppc64el (2.41.50.20231202-1ubuntu1) ... Setting up libc-dev-bin (2.38-3ubuntu1) ... Setting up openssl (3.0.10-1ubuntu3) ... Setting up libgpg-error-l10n (1.47-3) ... Setting up readline-common (8.2-3) ... Setting up libcc1-0:ppc64el (13.2.0-8ubuntu1) ... Setting up liblsan0:ppc64el (13.2.0-8ubuntu1) ... Setting up libitm1:ppc64el (13.2.0-8ubuntu1) ... Setting up libgdbm6:ppc64el (1.23-5) ... Setting up libctf0:ppc64el (2.41.50.20231202-1ubuntu1) ... 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Setting up libc6-dev:ppc64el (2.38-3ubuntu1) ... Setting up libstdc++-13-dev:ppc64el (13.2.0-8ubuntu1) ... Setting up g++-13 (13.2.0-8ubuntu1) ... Setting up g++ (4:13.2.0-2ubuntu1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... Processing triggers for debianutils (5.14) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27041525 ppc64el noble-proposed -c chroot:build-PACKAGEBUILD-27041525 --arch=ppc64el --dist=noble-proposed --nolog libvcflib_1.0.9+dfsg1-3.dsc Initiating build PACKAGEBUILD-27041525 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-167-generic #184-Ubuntu SMP Tue Oct 31 09:21:46 UTC 2023 ppc64le sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos01-ppc64el-015.buildd +==============================================================================+ | libvcflib 1.0.9+dfsg1-3 (ppc64el) Sun, 03 Dec 2023 17:12:34 +0000 | +==============================================================================+ Package: libvcflib Version: 1.0.9+dfsg1-3 Source Version: 1.0.9+dfsg1-3 Distribution: noble-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27041525/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/libvcflib-kZiB4P/resolver-WgLPct' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libvcflib_1.0.9+dfsg1-3.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libvcflib-kZiB4P/libvcflib-1.0.9+dfsg1' with '<>' I: NOTICE: Log filtering will replace 'build/libvcflib-kZiB4P' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, markdown, libtabixpp-dev, libbz2-dev, libdisorder-dev, libhts-dev, libsmithwaterman-dev, libssw-dev, libfastahack-dev, libwfa2-dev, pkg-config, libgtest-dev, python3-dev, python3-pybind11, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), cmake, markdown, libtabixpp-dev, libbz2-dev, libdisorder-dev, libhts-dev, libsmithwaterman-dev, libssw-dev, libfastahack-dev, libwfa2-dev, pkg-config, libgtest-dev, python3-dev, python3-pybind11, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [478 B] Get:5 copy:/<>/apt_archive ./ Packages [546 B] Fetched 1981 B in 0s (168 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 liblocale-gettext-perl libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 openssl psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev cmake cmake-data debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base googletest groff-base intltool-debian libarchive-zip-perl libarchive13 libbrotli1 libbz2-dev libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdisorder-dev libdisorder0 libdw1 libelf1 libexpat1 libexpat1-dev libfastahack-dev libfastahack0 libfile-stripnondeterminism-perl libgtest-dev libhts-dev libhts3 libhtscodecs2 libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore libjsoncpp25 libldap2 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpkgconf3 libpsl5 libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsmithwaterman-dev libsmithwaterman0 libssh-4 libssw-dev libssw0 libsub-override-perl libtabixpp-dev libtabixpp0 libtool libuchardet0 libuv1 libwfa2-0 libwfa2-dev libxml2 m4 man-db markdown media-types pkg-config pkgconf pkgconf-bin po-debconf pybind11-dev python3 python3-dev python3-distutils python3-lib2to3 python3-minimal python3-pybind11 python3.11 python3.11-dev python3.11-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format elpa-cmake-mode ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libcurl4-doc libgnutls28-dev libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl pybind11-doc python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binfmt-support Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl javascript-common libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl libeigen3-dev python3-numpy The following NEW packages will be installed: autoconf automake autopoint autotools-dev cmake cmake-data debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base googletest groff-base intltool-debian libarchive-zip-perl libarchive13 libbrotli1 libbz2-dev libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdisorder-dev libdisorder0 libdw1 libelf1 libexpat1 libexpat1-dev libfastahack-dev libfastahack0 libfile-stripnondeterminism-perl libgtest-dev libhts-dev libhts3 libhtscodecs2 libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore libjsoncpp25 libldap2 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpkgconf3 libpsl5 libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsmithwaterman-dev libsmithwaterman0 libssh-4 libssw-dev libssw0 libsub-override-perl libtabixpp-dev libtabixpp0 libtool libuchardet0 libuv1 libwfa2-0 libwfa2-dev libxml2 m4 man-db markdown media-types pkg-config pkgconf pkgconf-bin po-debconf pybind11-dev python3 python3-dev python3-distutils python3-lib2to3 python3-minimal python3-pybind11 python3.11 python3.11-dev python3.11-minimal sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 97 newly installed, 0 to remove and 0 not upgraded. Need to get 61.6 MB of archives. After this operation, 231 MB of additional disk space will be used. 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cmake-data all 3.27.9-1 [2130 kB] Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el cmake ppc64el 3.27.9-1 [11.3 MB] Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el libdebhelper-perl all 13.11.8ubuntu1 [85.9 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el libtool all 2.4.7-7 [166 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el dh-autoreconf all 20 [16.1 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main ppc64el libsub-override-perl all 0.09-4 [8706 B] Get:47 http://ftpmaster.internal/ubuntu noble/main ppc64el libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el libdw1 ppc64el 0.190-1 [294 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el debugedit ppc64el 1:5.0-5 [51.1 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main ppc64el dwz ppc64el 0.15-1 [139 kB] Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gettext ppc64el 0.21-14 [974 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main ppc64el debhelper all 13.11.8ubuntu1 [940 kB] Get:56 http://ftpmaster.internal/ubuntu noble/universe ppc64el googletest all 1.14.0-1 [521 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main ppc64el libbz2-dev ppc64el 1.0.8-5build1 [49.3 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main ppc64el libcurl3-gnutls ppc64el 8.4.0-2ubuntu1 [411 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main ppc64el libcurl4-gnutls-dev ppc64el 8.4.0-2ubuntu1 [519 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.18-1 [58.4 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate-dev ppc64el 1.18-1 [65.8 kB] Get:62 http://ftpmaster.internal/ubuntu noble/universe ppc64el libdisorder0 ppc64el 0.0.2+git20130809.8062ee1-4 [5134 B] Get:63 http://ftpmaster.internal/ubuntu noble/universe ppc64el libdisorder-dev ppc64el 0.0.2+git20130809.8062ee1-4 [4050 B] Get:64 http://ftpmaster.internal/ubuntu noble/main ppc64el libexpat1-dev ppc64el 2.5.0-2 [145 kB] Get:65 http://ftpmaster.internal/ubuntu noble/universe ppc64el libfastahack0 ppc64el 1.0.0+dfsg-10 [33.6 kB] Get:66 http://ftpmaster.internal/ubuntu noble/universe ppc64el libfastahack-dev ppc64el 1.0.0+dfsg-10 [35.1 kB] Get:67 http://ftpmaster.internal/ubuntu noble/universe ppc64el libgtest-dev ppc64el 1.14.0-1 [280 kB] Get:68 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.5.2-1 [109 kB] Get:69 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3 ppc64el 1.18+ds-1 [553 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main ppc64el liblzma-dev ppc64el 5.4.5-0.1 [204 kB] Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg-3ubuntu1 [902 kB] Get:72 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts-dev ppc64el 1.18+ds-1 [6252 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-sphinxdoc all 7.2.6-2 [149 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main ppc64el libpkgconf3 ppc64el 1.8.1-2 [36.9 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main ppc64el libpython3.11 ppc64el 3.11.6-3 [2395 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main ppc64el libpython3.11-dev ppc64el 3.11.6-3 [5523 kB] Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3-dev ppc64el 3.11.4-5ubuntu1 [9828 B] Get:80 http://ftpmaster.internal/ubuntu noble/universe ppc64el libsmithwaterman0 ppc64el 0.0+git20160702.2610e25-12 [46.6 kB] Get:81 http://ftpmaster.internal/ubuntu noble/universe ppc64el libsmithwaterman-dev ppc64el 0.0+git20160702.2610e25-12 [52.8 kB] Get:82 http://ftpmaster.internal/ubuntu noble/universe ppc64el libssw0 ppc64el 1.1-14 [23.9 kB] Get:83 http://ftpmaster.internal/ubuntu noble/universe ppc64el libssw-dev ppc64el 1.1-14 [26.0 kB] Get:84 http://ftpmaster.internal/ubuntu noble/universe ppc64el libtabixpp0 ppc64el 1.1.2-1 [10.1 kB] Get:85 http://ftpmaster.internal/ubuntu noble/universe ppc64el libtabixpp-dev ppc64el 1.1.2-1 [8630 B] Get:86 http://ftpmaster.internal/ubuntu noble/universe ppc64el libwfa2-0 ppc64el 2.3.3-2 [75.7 kB] Get:87 http://ftpmaster.internal/ubuntu noble/universe ppc64el libwfa2-dev ppc64el 2.3.3-2 [99.1 kB] Get:88 http://ftpmaster.internal/ubuntu noble/universe ppc64el markdown all 1.0.1-12 [17.8 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main ppc64el pkgconf-bin ppc64el 1.8.1-2 [22.0 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main ppc64el pkgconf ppc64el 1.8.1-2 [16.7 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main ppc64el pkg-config ppc64el 1.8.1-2 [7170 B] Get:92 http://ftpmaster.internal/ubuntu noble/universe ppc64el pybind11-dev all 2.11.1-2 [159 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main ppc64el python3.11-dev ppc64el 3.11.6-3 [507 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-lib2to3 all 3.11.5-1 [79.0 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-distutils all 3.11.5-1 [131 kB] Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-dev ppc64el 3.11.4-5ubuntu1 [26.8 kB] Get:97 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pybind11 all 2.11.1-2 [167 kB] Preconfiguring packages ... Fetched 61.6 MB in 4s (15.5 MB/s) Selecting previously unselected package libpython3.11-minimal:ppc64el. (Reading database ... 13582 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.6-3_ppc64el.deb ... Unpacking libpython3.11-minimal:ppc64el (3.11.6-3) ... Selecting previously unselected package libexpat1:ppc64el. Preparing to unpack .../libexpat1_2.5.0-2_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.5.0-2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.6-3_ppc64el.deb ... Unpacking python3.11-minimal (3.11.6-3) ... Setting up libpython3.11-minimal:ppc64el (3.11.6-3) ... Setting up libexpat1:ppc64el (2.5.0-2) ... Setting up python3.11-minimal (3.11.6-3) ... Selecting previously unselected package python3-minimal. (Reading database ... 13896 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.11.4-5ubuntu1_ppc64el.deb ... 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Setting up libdebhelper-perl (13.11.8ubuntu1) ... Setting up libbrotli1:ppc64el (1.1.0-2) ... Setting up libsmithwaterman0:ppc64el (0.0+git20160702.2610e25-12) ... Setting up libnghttp2-14:ppc64el (1.58.0-1) ... Setting up libmagic1:ppc64el (1:5.45-2) ... Setting up libdeflate0:ppc64el (1.18-1) ... Setting up gettext-base (0.21-14) ... Setting up m4 (1.4.19-4) ... Setting up libwfa2-dev (2.3.3-2) ... Setting up file (1:5.45-2) ... Setting up googletest (1.14.0-1) ... Setting up libfastahack0:ppc64el (1.0.0+dfsg-10) ... Setting up libsasl2-modules-db:ppc64el (2.1.28+dfsg1-4) ... Setting up libfastahack-dev:ppc64el (1.0.0+dfsg-10) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:ppc64el (1.8.1-2) ... Setting up libuv1:ppc64el (1.46.0-2) ... Setting up libexpat1-dev:ppc64el (2.5.0-2) ... Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build4) ... Setting up autopoint (0.21-14) ... Setting up libjsoncpp25:ppc64el (1.9.5-6) ... Setting up pkgconf-bin (1.8.1-2) ... Setting up libdisorder-dev:ppc64el (0.0.2+git20130809.8062ee1-4) ... Setting up libsasl2-2:ppc64el (2.1.28+dfsg1-4) ... Setting up libssh-4:ppc64el (0.10.5-3ubuntu1) ... Setting up autoconf (2.71-3) ... Setting up liblzma-dev:ppc64el (5.4.5-0.1) ... Setting up zlib1g-dev:ppc64el (1:1.3.dfsg-3ubuntu1) ... Setting up librhash0:ppc64el (1.4.3-3) ... Setting up libuchardet0:ppc64el (0.0.8-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up cmake-data (3.27.9-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libdeflate-dev:ppc64el (1.18-1) ... Setting up libelf1:ppc64el (0.190-1) ... Setting up libssw0:ppc64el (1.1-14) ... Setting up libxml2:ppc64el (2.9.14+dfsg-1.3build2) ... Setting up libldap2:ppc64el (2.6.6+dfsg-1~exp1ubuntu1) ... Setting up markdown (1.0.1-12) ... Setting up libpython3-stdlib:ppc64el (3.11.4-5ubuntu1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libbz2-dev:ppc64el (1.0.8-5build1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.11 (3.11.6-3) ... Setting up libdw1:ppc64el (0.190-1) ... Setting up gettext (0.21-14) ... Setting up libgtest-dev:ppc64el (1.14.0-1) ... Setting up libpython3.11:ppc64el (3.11.6-3) ... Setting up libssw-dev:ppc64el (1.1-14) ... Setting up libtool (2.4.7-7) ... Setting up libarchive13:ppc64el (3.7.2-1ubuntu2) ... Setting up libcurl3-gnutls:ppc64el (8.4.0-2ubuntu1) ... Setting up python3 (3.11.4-5ubuntu1) ... Setting up libcurl4-gnutls-dev:ppc64el (8.4.0-2ubuntu1) ... Setting up pkgconf:ppc64el (1.8.1-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libpython3.11-dev:ppc64el (3.11.6-3) ... Setting up pkg-config:ppc64el (1.8.1-2) ... Setting up libsmithwaterman-dev:ppc64el (0.0+git20160702.2610e25-12) ... Setting up libjs-sphinxdoc (7.2.6-2) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:ppc64el (8.4.0-2ubuntu1) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-distutils (3.11.5-1) ... Setting up libhts3:ppc64el (1.18+ds-1) ... Setting up libpython3-dev:ppc64el (3.11.4-5ubuntu1) ... Setting up python3.11-dev (3.11.6-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhts-dev:ppc64el (1.18+ds-1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up pybind11-dev (2.11.1-2) ... Setting up python3-dev (3.11.4-5ubuntu1) ... Setting up libtabixpp0:ppc64el (1.1.2-1) ... Setting up cmake (3.27.9-1) ... Setting up python3-pybind11 (2.11.1-2) ... Setting up debhelper (13.11.8ubuntu1) ... Setting up libtabixpp-dev:ppc64el (1.1.2-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for systemd (253.5-1ubuntu7) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any-amd64 arm64 loong64 mips64el ppc64el s390x ia64 ppc64 riscv64 sparc64 alpha) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-167-generic #184-Ubuntu SMP Tue Oct 31 09:21:46 UTC 2023 ppc64el (ppc64le) Toolchain package versions: binutils_2.41.50.20231202-1ubuntu1 dpkg-dev_1.22.1ubuntu3 g++-13_13.2.0-8ubuntu1 gcc-13_13.2.0-8ubuntu1 libc6-dev_2.38-3ubuntu1 libstdc++-13-dev_13.2.0-8ubuntu1 libstdc++6_13.2.0-8ubuntu1 linux-libc-dev_6.6.0-14.14 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.7 apt-utils_2.7.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13ubuntu5 base-passwd_3.6.3 bash_5.2.21-2ubuntu1 bash-completion_1:2.11-8 binutils_2.41.50.20231202-1ubuntu1 binutils-common_2.41.50.20231202-1ubuntu1 binutils-powerpc64le-linux-gnu_2.41.50.20231202-1ubuntu1 bsdextrautils_2.39.2-6ubuntu1 bsdutils_1:2.39.2-6ubuntu1 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 cmake_3.27.9-1 cmake-data_3.27.9-1 coreutils_9.4-2ubuntu1 cpp_4:13.2.0-2ubuntu1 cpp-13_13.2.0-8ubuntu1 dash_0.5.12-6ubuntu1 debconf_1.5.82 debconf-i18n_1.5.82 debhelper_13.11.8ubuntu1 debianutils_5.14 debugedit_1:5.0-5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.1ubuntu3 dpkg-dev_1.22.1ubuntu3 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-2ubuntu1 g++-13_13.2.0-8ubuntu1 gcc_4:13.2.0-2ubuntu1 gcc-13_13.2.0-8ubuntu1 gcc-13-base_13.2.0-8ubuntu1 gettext_0.21-14 gettext-base_0.21-14 googletest_1.14.0-1 gpg_2.2.40-1.1ubuntu1 gpg-agent_2.2.40-1.1ubuntu1 gpgconf_2.2.40-1.1ubuntu1 gpgv_2.2.40-1.1ubuntu1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1ubuntu1 hostname_3.23+nmu1ubuntu1 init_1.65.2ubuntu1 init-system-helpers_1.65.2ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-5build1 libacl1_2.3.1-3 libapparmor1_4.0.0~alpha2-0ubuntu6 libapt-pkg6.0_2.7.7 libarchive-zip-perl_1.68-1 libarchive13_3.7.2-1ubuntu2 libargon2-1_0~20190702+dfsg-4 libasan8_13.2.0-8ubuntu1 libassuan0_2.5.6-1 libatomic1_13.2.0-8ubuntu1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1build1 libaudit1_1:3.1.1-1build1 libbinutils_2.41.50.20231202-1ubuntu1 libblkid1_2.39.2-6ubuntu1 libbrotli1_1.1.0-2 libbz2-1.0_1.0.8-5build1 libbz2-dev_1.0.8-5build1 libc-bin_2.38-3ubuntu1 libc-dev-bin_2.38-3ubuntu1 libc6_2.38-3ubuntu1 libc6-dev_2.38-3ubuntu1 libcap-ng0_0.8.3-1build3 libcap2_1:2.66-4ubuntu1 libcc1-0_13.2.0-8ubuntu1 libcom-err2_1.47.0-2ubuntu1 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libcryptsetup12_2:2.6.1-5ubuntu1 libctf-nobfd0_2.41.50.20231202-1ubuntu1 libctf0_2.41.50.20231202-1ubuntu1 libcurl3-gnutls_8.4.0-2ubuntu1 libcurl4_8.4.0-2ubuntu1 libcurl4-gnutls-dev_8.4.0-2ubuntu1 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271ubuntu1 libdebhelper-perl_13.11.8ubuntu1 libdeflate-dev_1.18-1 libdeflate0_1.18-1 libdevmapper1.02.1_2:1.02.185-2ubuntu1 libdisorder-dev_0.0.2+git20130809.8062ee1-4 libdisorder0_0.0.2+git20130809.8062ee1-4 libdpkg-perl_1.22.1ubuntu3 libdw1_0.190-1 libelf1_0.190-1 libexpat1_2.5.0-2 libexpat1-dev_2.5.0-2 libext2fs2_1.47.0-2ubuntu1 libfakeroot_1.32.2-1 libfastahack-dev_1.0.0+dfsg-10 libfastahack0_1.0.0+dfsg-10 libfdisk1_2.39.2-6ubuntu1 libffi8_3.4.4-2 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-13-dev_13.2.0-8ubuntu1 libgcc-s1_13.2.0-8ubuntu1 libgcrypt20_1.10.2-3ubuntu1 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgmp10_2:6.3.0+dfsg-2ubuntu4 libgnutls30_3.8.1-4ubuntu6 libgomp1_13.2.0-8ubuntu1 libgpg-error-l10n_1.47-3 libgpg-error0_1.47-3 libgpm2_1.20.7-10build1 libgssapi-krb5-2_1.20.1-5build1 libgtest-dev_1.14.0-1 libhogweed6_3.9.1-2 libhts-dev_1.18+ds-1 libhts3_1.18+ds-1 libhtscodecs2_1.5.2-1 libicu72_72.1-3ubuntu3 libidn2-0_2.3.4-1build1 libip4tc2_1.8.9-2ubuntu2 libisl23_0.26-3 libitm1_13.2.0-8ubuntu1 libjansson4_2.14-2 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-sphinxdoc_7.2.6-2 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libjson-c5_0.17-1 libjsoncpp25_1.9.5-6 libk5crypto3_1.20.1-5build1 libkeyutils1_1.6.3-2 libkmod2_30+20230519-1ubuntu3 libkrb5-3_1.20.1-5build1 libkrb5support0_1.20.1-5build1 libldap2_2.6.6+dfsg-1~exp1ubuntu1 liblocale-gettext-perl_1.07-6 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblsan0_13.2.0-8ubuntu1 liblz4-1_1.9.4-1 liblzma-dev_5.4.5-0.1 liblzma5_5.4.5-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmount1_2.39.2-6ubuntu1 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncursesw6_6.4+20231121-1build1 libnettle8_3.9.1-2 libnghttp2-14_1.58.0-1 libnpth0_1.6-3build2 libnsl-dev_1.3.0-3 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libsmithwaterman0_0.0+git20160702.2610e25-12 libsqlite3-0_3.44.2-1 libss2_1.47.0-2ubuntu1 libssh-4_0.10.5-3ubuntu1 libssl3_3.0.10-1ubuntu3 libssw-dev_1.1-14 libssw0_1.1-14 libstdc++-13-dev_13.2.0-8ubuntu1 libstdc++6_13.2.0-8ubuntu1 libsub-override-perl_0.09-4 libsystemd-shared_253.5-1ubuntu7 libsystemd0_253.5-1ubuntu7 libtabixpp-dev_1.1.2-1 libtabixpp0_1.1.2-1 libtasn1-6_4.19.0-3 libtext-charwidth-perl_0.04-11 libtext-iconv-perl_1.7-8 libtext-wrapi18n-perl_0.06-10 libtinfo6_6.4+20231121-1build1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libtsan2_13.2.0-8ubuntu1 libubsan1_13.2.0-8ubuntu1 libuchardet0_0.0.8-1 libudev1_253.5-1ubuntu7 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.2-6ubuntu1 libuv1_1.46.0-2 libwfa2-0_2.3.3-2 libwfa2-dev_2.3.3-2 libxml2_2.9.14+dfsg-1.3build2 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.6.0-14.14 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-1ubuntu1 logsave_1.47.0-2ubuntu1 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systemd-dev_253.5-1ubuntu7 systemd-sysv_253.5-1ubuntu7 sysvinit-utils_3.08-3ubuntu1 tar_1.34+dfsg-1.2ubuntu1 tzdata_2023c-9ubuntu1 ubuntu-keyring_2023.11.28.1 usrmerge_35ubuntu1 util-linux_2.39.2-6ubuntu1 uuid-runtime_2.39.2-6ubuntu1 xz-utils_5.4.5-0.1 zlib1g_1:1.3.dfsg-3ubuntu1 zlib1g-dev_1:1.3.dfsg-3ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libvcflib Binary: libvcflib2, libvcflib-dev, libvcflib-tools Architecture: any-amd64 arm64 loong64 mips64el ppc64el s390x ia64 ppc64 riscv64 sparc64 alpha Version: 1.0.9+dfsg1-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/vcflib/vcflib Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libvcflib Vcs-Git: 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dpkg-source: info: applying pkg-config.patch dpkg-source: info: applying tabix_linking dpkg-source: info: applying wfa2_linking Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27041525 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27041525 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27041525 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package libvcflib dpkg-buildpackage: info: source version 1.0.9+dfsg1-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean --buildsystem cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean || true make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=cmake debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean find . -name "*.o" -delete rm -f README.html build/ rm -rf contrib/filevercmp contrib/multichoose contrib/intervaltree make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch --buildsystem cmake dh_update_autotools_config -a -O--buildsystem=cmake dh_autoreconf -a -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' cp -a debian/ext/* contrib/ dh_auto_configure -- -DOPENMP=ON -DCMAKE_BUILD_RPATH_USE_ORIGIN=ON -DZIG=OFF -DWFA_GITMODULE=OFF -DHTSLIB_FOUND=ON -DTABIX_FOUND=ON cd obj-powerpc64le-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/powerpc64le-linux-gnu -DOPENMP=ON -DCMAKE_BUILD_RPATH_USE_ORIGIN=ON -DZIG=OFF -DWFA_GITMODULE=OFF -DHTSLIB_FOUND=ON -DTABIX_FOUND=ON .. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") CMake Warning (dev) at /usr/lib/cmake/pybind11/FindPythonLibsNew.cmake:98 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/lib/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/lib/cmake/pybind11/pybind11Common.cmake:188 (include) /usr/lib/cmake/pybind11/pybind11Config.cmake:250 (include) CMakeLists.txt:19 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11.6", minimum required is "3.6") -- Found PythonLibs: /usr/lib/powerpc64le-linux-gnu/libpython3.11.so -- Found pybind11: /usr/include (found version "2.11.1") -- Found BZip2: /usr/lib/powerpc64le-linux-gnu/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Looking for lzma_auto_decoder in /usr/lib/powerpc64le-linux-gnu/liblzma.so -- Looking for lzma_auto_decoder in /usr/lib/powerpc64le-linux-gnu/liblzma.so - found -- Looking for lzma_easy_encoder in /usr/lib/powerpc64le-linux-gnu/liblzma.so -- Looking for lzma_easy_encoder in /usr/lib/powerpc64le-linux-gnu/liblzma.so - found -- Looking for lzma_lzma_preset in /usr/lib/powerpc64le-linux-gnu/liblzma.so -- Looking for lzma_lzma_preset in /usr/lib/powerpc64le-linux-gnu/liblzma.so - found -- Found LibLZMA: /usr/lib/powerpc64le-linux-gnu/liblzma.so (found version "5.4.5") -- Found ZLIB: /usr/lib/powerpc64le-linux-gnu/libz.so (found version "1.3") -- Found CURL: /usr/lib/powerpc64le-linux-gnu/libcurl.so (found version "8.4.0") -- -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Checking for module 'htslib' -- Found htslib, version 1.18 -- Checking for module 'tabixpp' -- Package 'tabixpp', required by 'virtual:world', not found -- Checking for module 'libsmithwaterman' -- Found libsmithwaterman, version 0.0 -- Checking for module 'libfastahack' -- Found libfastahack, version 0.0 -- WFA using include /usr/include/wfa2lib Pandoc needs to be installed to generate the man pages -- Configuring done (2.6s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<>/obj-powerpc64le-linux-gnu make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build cd obj-powerpc64le-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/obj-powerpc64le-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-powerpc64le-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-powerpc64le-linux-gnu/CMakeFiles /<>/obj-powerpc64le-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcflib.dir/build.make CMakeFiles/vcflib.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcflib.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcflib.dir/build.make CMakeFiles/vcflib.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 0%] Building CXX object CMakeFiles/vcflib.dir/src/legacy.cpp.o [ 1%] Building CXX object CMakeFiles/vcflib.dir/src/vcf-c-api.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/vcf-c-api.cpp.o -MF CMakeFiles/vcflib.dir/src/vcf-c-api.cpp.o.d -o CMakeFiles/vcflib.dir/src/vcf-c-api.cpp.o -c /<>/src/vcf-c-api.cpp /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/legacy.cpp.o -MF CMakeFiles/vcflib.dir/src/legacy.cpp.o.d -o CMakeFiles/vcflib.dir/src/legacy.cpp.o -c /<>/src/legacy.cpp [ 2%] Building CXX object CMakeFiles/vcflib.dir/src/vcf-wfa.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/vcf-wfa.cpp.o -MF CMakeFiles/vcflib.dir/src/vcf-wfa.cpp.o.d -o CMakeFiles/vcflib.dir/src/vcf-wfa.cpp.o -c /<>/src/vcf-wfa.cpp [ 2%] Building CXX object CMakeFiles/vcflib.dir/src/Variant.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/Variant.cpp.o -MF CMakeFiles/vcflib.dir/src/Variant.cpp.o.d -o CMakeFiles/vcflib.dir/src/Variant.cpp.o -c /<>/src/Variant.cpp In file included from /<>/src/vcf-c-api.cpp:9: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/legacy.cpp:12: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcf-wfa.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /<>/src/Variant.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 3%] Building CXX object CMakeFiles/vcflib.dir/src/rnglib.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/rnglib.cpp.o -MF CMakeFiles/vcflib.dir/src/rnglib.cpp.o.d -o CMakeFiles/vcflib.dir/src/rnglib.cpp.o -c /<>/src/rnglib.cpp [ 3%] Building CXX object CMakeFiles/vcflib.dir/src/var.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/var.cpp.o -MF CMakeFiles/vcflib.dir/src/var.cpp.o.d -o CMakeFiles/vcflib.dir/src/var.cpp.o -c /<>/src/var.cpp [ 4%] Building CXX object CMakeFiles/vcflib.dir/src/pdflib.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/pdflib.cpp.o -MF CMakeFiles/vcflib.dir/src/pdflib.cpp.o.d -o CMakeFiles/vcflib.dir/src/pdflib.cpp.o -c /<>/src/pdflib.cpp [ 4%] Building CXX object CMakeFiles/vcflib.dir/src/cdflib.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/cdflib.cpp.o -MF CMakeFiles/vcflib.dir/src/cdflib.cpp.o.d -o CMakeFiles/vcflib.dir/src/cdflib.cpp.o -c /<>/src/cdflib.cpp [ 5%] Building CXX object CMakeFiles/vcflib.dir/src/split.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/split.cpp.o -MF CMakeFiles/vcflib.dir/src/split.cpp.o.d -o CMakeFiles/vcflib.dir/src/split.cpp.o -c /<>/src/split.cpp [ 6%] Building CXX object CMakeFiles/vcflib.dir/src/rkmh.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/rkmh.cpp.o -MF CMakeFiles/vcflib.dir/src/rkmh.cpp.o.d -o CMakeFiles/vcflib.dir/src/rkmh.cpp.o -c /<>/src/rkmh.cpp [ 6%] Building CXX object CMakeFiles/vcflib.dir/src/murmur3.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/murmur3.cpp.o -MF CMakeFiles/vcflib.dir/src/murmur3.cpp.o.d -o CMakeFiles/vcflib.dir/src/murmur3.cpp.o -c /<>/src/murmur3.cpp [ 7%] Building CXX object CMakeFiles/vcflib.dir/src/LeftAlign.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/LeftAlign.cpp.o -MF CMakeFiles/vcflib.dir/src/LeftAlign.cpp.o.d -o CMakeFiles/vcflib.dir/src/LeftAlign.cpp.o -c /<>/src/LeftAlign.cpp [ 7%] Building CXX object CMakeFiles/vcflib.dir/src/cigar.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/cigar.cpp.o -MF CMakeFiles/vcflib.dir/src/cigar.cpp.o.d -o CMakeFiles/vcflib.dir/src/cigar.cpp.o -c /<>/src/cigar.cpp [ 8%] Building CXX object CMakeFiles/vcflib.dir/src/allele.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/allele.cpp.o -MF CMakeFiles/vcflib.dir/src/allele.cpp.o.d -o CMakeFiles/vcflib.dir/src/allele.cpp.o -c /<>/src/allele.cpp [ 8%] Building C object CMakeFiles/vcflib.dir/contrib/filevercmp/filevercmp.c.o /usr/bin/cc -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/contrib/filevercmp/filevercmp.c.o -MF CMakeFiles/vcflib.dir/contrib/filevercmp/filevercmp.c.o.d -o CMakeFiles/vcflib.dir/contrib/filevercmp/filevercmp.c.o -c /<>/contrib/filevercmp/filevercmp.c [ 9%] Building C object CMakeFiles/vcflib.dir/contrib/c-progress-bar/progress.c.o /usr/bin/cc -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/contrib/c-progress-bar/progress.c.o -MF CMakeFiles/vcflib.dir/contrib/c-progress-bar/progress.c.o.d -o CMakeFiles/vcflib.dir/contrib/c-progress-bar/progress.c.o -c /<>/contrib/c-progress-bar/progress.c /<>/contrib/c-progress-bar/progress.c: In function ‘print_timedelta’: /<>/contrib/c-progress-bar/progress.c:79:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 79 | fprintf(stderr,"%lluh %llum %llus ", hours, minutes, seconds); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/contrib/c-progress-bar/progress.c:79:34: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 79 | fprintf(stderr,"%lluh %llum %llus ", hours, minutes, seconds); | ~~~^ ~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/contrib/c-progress-bar/progress.c:79:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 79 | fprintf(stderr,"%lluh %llum %llus ", hours, minutes, seconds); | ~~~^ ~~~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu /<>/contrib/c-progress-bar/progress.c:82:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 82 | fprintf(stderr,"%llum %02llus ", minutes, seconds); | ~~~^ ~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/contrib/c-progress-bar/progress.c:82:36: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 82 | fprintf(stderr,"%llum %02llus ", minutes, seconds); | ~~~~~^ ~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %02lu /<>/contrib/c-progress-bar/progress.c:85:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 85 | fprintf(stderr,"%llu.%llus ", seconds, mseconds); | ~~~^ ~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /<>/contrib/c-progress-bar/progress.c:85:33: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 85 | fprintf(stderr,"%llu.%llus ", seconds, mseconds); | ~~~^ ~~~~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu [ 9%] Linking CXX shared library libvcflib.so /usr/bin/cmake -E cmake_link_script CMakeFiles/vcflib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat 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/<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/dumpContigsFromHeader.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/pVst.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/bFst.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfecho.dir/build.make CMakeFiles/vcfecho.dir/build make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/dumpContigsFromHeader.dir/build.make CMakeFiles/dumpContigsFromHeader.dir/build make -f CMakeFiles/pVst.dir/build.make CMakeFiles/pVst.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/bFst.dir/build.make CMakeFiles/bFst.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 9%] Building CXX object CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o [ 9%] Building CXX object CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o -MF CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o.d -o CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o -c /<>/src/vcfecho.cpp /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o -MF CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o.d -o CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o -c /<>/src/dumpContigsFromHeader.cpp [ 10%] Building CXX object CMakeFiles/pVst.dir/src/pVst.cpp.o [ 10%] Building CXX object CMakeFiles/bFst.dir/src/bFst.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/pVst.dir/src/pVst.cpp.o -MF CMakeFiles/pVst.dir/src/pVst.cpp.o.d -o CMakeFiles/pVst.dir/src/pVst.cpp.o -c /<>/src/pVst.cpp /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/bFst.dir/src/bFst.cpp.o -MF CMakeFiles/bFst.dir/src/bFst.cpp.o.d -o CMakeFiles/bFst.dir/src/bFst.cpp.o -c /<>/src/bFst.cpp In file included from /<>/src/bFst.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /<>/src/dumpContigsFromHeader.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/pVst.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfecho.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/pVst.cpp: In function ‘void calc(copyNcounts*)’: /<>/src/pVst.cpp:191:24: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 191 | std::random_shuffle(d->total.begin(), d->total.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/functional:67, from /<>/src/Variant.h:24: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 11%] Linking CXX executable dumpContigsFromHeader /usr/bin/cmake -E cmake_link_script CMakeFiles/dumpContigsFromHeader.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o -o dumpContigsFromHeader -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 12%] Linking CXX executable vcfecho /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfecho.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o -o vcfecho -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 12%] Built target dumpContigsFromHeader make -f CMakeFiles/hapLrt.dir/build.make CMakeFiles/hapLrt.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/hapLrt.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/hapLrt.dir/build.make CMakeFiles/hapLrt.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 12%] Building CXX object CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o -MF CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o.d -o CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o -c /<>/src/hapLrt.cpp [ 13%] Linking CXX executable bFst /usr/bin/cmake -E cmake_link_script CMakeFiles/bFst.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/bFst.dir/src/bFst.cpp.o -o bFst -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 13%] Linking CXX executable pVst /usr/bin/cmake -E cmake_link_script CMakeFiles/pVst.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/pVst.dir/src/pVst.cpp.o -o pVst -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 13%] Built target vcfecho make -f CMakeFiles/popStats.dir/build.make CMakeFiles/popStats.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/popStats.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/popStats.dir/build.make CMakeFiles/popStats.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 14%] Building CXX object CMakeFiles/popStats.dir/src/popStats.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/popStats.dir/src/popStats.cpp.o -MF CMakeFiles/popStats.dir/src/popStats.cpp.o.d -o CMakeFiles/popStats.dir/src/popStats.cpp.o -c /<>/src/popStats.cpp In file included from /<>/src/hapLrt.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/popStats.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 14%] Linking CXX executable popStats /usr/bin/cmake -E cmake_link_script CMakeFiles/popStats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/popStats.dir/src/popStats.cpp.o -o popStats -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 15%] Linking CXX executable hapLrt /usr/bin/cmake -E cmake_link_script CMakeFiles/hapLrt.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o -o hapLrt -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 15%] Built target bFst make -f CMakeFiles/wcFst.dir/build.make CMakeFiles/wcFst.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/wcFst.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/wcFst.dir/build.make CMakeFiles/wcFst.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 16%] Building CXX object CMakeFiles/wcFst.dir/src/wcFst.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/wcFst.dir/src/wcFst.cpp.o -MF CMakeFiles/wcFst.dir/src/wcFst.cpp.o.d -o CMakeFiles/wcFst.dir/src/wcFst.cpp.o -c /<>/src/wcFst.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 16%] Built target pVst make -f CMakeFiles/iHS.dir/build.make CMakeFiles/iHS.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/iHS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/iHS.dir/build.make CMakeFiles/iHS.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 16%] Building CXX object CMakeFiles/iHS.dir/src/iHS.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/iHS.dir/src/iHS.cpp.o -MF CMakeFiles/iHS.dir/src/iHS.cpp.o.d -o CMakeFiles/iHS.dir/src/iHS.cpp.o -c /<>/src/iHS.cpp In file included from /<>/src/wcFst.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/iHS.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 16%] Built target popStats make -f CMakeFiles/segmentFst.dir/build.make CMakeFiles/segmentFst.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/segmentFst.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/segmentFst.dir/build.make CMakeFiles/segmentFst.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 17%] Building CXX object CMakeFiles/segmentFst.dir/src/segmentFst.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/segmentFst.dir/src/segmentFst.cpp.o -MF CMakeFiles/segmentFst.dir/src/segmentFst.cpp.o.d -o CMakeFiles/segmentFst.dir/src/segmentFst.cpp.o -c /<>/src/segmentFst.cpp [ 18%] Linking CXX executable wcFst /usr/bin/cmake -E cmake_link_script CMakeFiles/wcFst.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/wcFst.dir/src/wcFst.cpp.o -o wcFst -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 19%] Linking CXX executable iHS /usr/bin/cmake -E cmake_link_script CMakeFiles/iHS.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/iHS.dir/src/iHS.cpp.o -o iHS -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 19%] Built target hapLrt make -f CMakeFiles/segmentIhs.dir/build.make CMakeFiles/segmentIhs.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/segmentIhs.dir/DependInfo.cmake "--color=" [ 19%] Linking CXX executable segmentFst /usr/bin/cmake -E cmake_link_script CMakeFiles/segmentFst.dir/link.txt --verbose=1 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/segmentIhs.dir/build.make CMakeFiles/segmentIhs.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/segmentFst.dir/src/segmentFst.cpp.o -o segmentFst -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 20%] Building CXX object CMakeFiles/segmentIhs.dir/src/segmentIhs.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/segmentIhs.dir/src/segmentIhs.cpp.o -MF CMakeFiles/segmentIhs.dir/src/segmentIhs.cpp.o.d -o CMakeFiles/segmentIhs.dir/src/segmentIhs.cpp.o -c /<>/src/segmentIhs.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 20%] Built target segmentFst make -f CMakeFiles/genotypeSummary.dir/build.make CMakeFiles/genotypeSummary.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/genotypeSummary.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/genotypeSummary.dir/build.make CMakeFiles/genotypeSummary.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 20%] Building CXX object CMakeFiles/genotypeSummary.dir/src/genotypeSummary.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/genotypeSummary.dir/src/genotypeSummary.cpp.o -MF CMakeFiles/genotypeSummary.dir/src/genotypeSummary.cpp.o.d -o CMakeFiles/genotypeSummary.dir/src/genotypeSummary.cpp.o -c /<>/src/genotypeSummary.cpp [ 20%] Linking CXX executable segmentIhs /usr/bin/cmake -E cmake_link_script CMakeFiles/segmentIhs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/segmentIhs.dir/src/segmentIhs.cpp.o -o segmentIhs -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 20%] Built target wcFst make -f CMakeFiles/sequenceDiversity.dir/build.make CMakeFiles/sequenceDiversity.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/sequenceDiversity.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/sequenceDiversity.dir/build.make CMakeFiles/sequenceDiversity.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 21%] Building CXX object CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o -MF CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o.d -o CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o -c /<>/src/sequenceDiversity.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 21%] Built target segmentIhs make -f CMakeFiles/pFst.dir/build.make CMakeFiles/pFst.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/pFst.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/pFst.dir/build.make CMakeFiles/pFst.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' In file included from /<>/src/genotypeSummary.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 21%] Building CXX object CMakeFiles/pFst.dir/src/pFst.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/pFst.dir/src/pFst.cpp.o -MF CMakeFiles/pFst.dir/src/pFst.cpp.o.d -o CMakeFiles/pFst.dir/src/pFst.cpp.o -c /<>/src/pFst.cpp In file included from /<>/src/sequenceDiversity.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 21%] Built target iHS make -f CMakeFiles/smoother.dir/build.make CMakeFiles/smoother.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/smoother.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/smoother.dir/build.make CMakeFiles/smoother.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 21%] Building CXX object CMakeFiles/smoother.dir/src/smoother.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/smoother.dir/src/smoother.cpp.o -MF CMakeFiles/smoother.dir/src/smoother.cpp.o.d -o CMakeFiles/smoother.dir/src/smoother.cpp.o -c /<>/src/smoother.cpp In file included from /<>/src/pFst.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 22%] Linking CXX executable genotypeSummary /usr/bin/cmake -E cmake_link_script CMakeFiles/genotypeSummary.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/genotypeSummary.dir/src/genotypeSummary.cpp.o -o genotypeSummary -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 23%] Linking CXX executable sequenceDiversity /usr/bin/cmake -E cmake_link_script CMakeFiles/sequenceDiversity.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o -o sequenceDiversity -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 24%] Linking CXX executable pFst /usr/bin/cmake -E cmake_link_script 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/<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfld.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfld.dir/build.make CMakeFiles/vcfld.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 26%] Building CXX object CMakeFiles/vcfld.dir/src/vcfld.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfld.dir/src/vcfld.cpp.o -MF CMakeFiles/vcfld.dir/src/vcfld.cpp.o.d -o CMakeFiles/vcfld.dir/src/vcfld.cpp.o -c /<>/src/vcfld.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 26%] Built target smoother make -f CMakeFiles/plotHaps.dir/build.make CMakeFiles/plotHaps.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/plotHaps.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/plotHaps.dir/build.make CMakeFiles/plotHaps.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 27%] Building CXX object CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o -MF CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o.d -o CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o -c /<>/src/plotHaps.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 27%] Built target pFst make -f CMakeFiles/abba-baba.dir/build.make CMakeFiles/abba-baba.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/abba-baba.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/abba-baba.dir/build.make CMakeFiles/abba-baba.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 27%] Building CXX object CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o -MF CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o.d -o CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o -c /<>/src/abba-baba.cpp In file included from /<>/src/vcfld.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 27%] Built target sequenceDiversity make -f CMakeFiles/permuteGPAT++.dir/build.make CMakeFiles/permuteGPAT++.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/permuteGPAT++.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/permuteGPAT++.dir/build.make CMakeFiles/permuteGPAT++.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 28%] Building CXX object CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o -MF CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o.d -o CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o -c /<>/src/permuteGPAT++.cpp In file included from /<>/src/plotHaps.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/abba-baba.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 28%] Linking CXX executable permuteGPAT++ /usr/bin/cmake -E cmake_link_script CMakeFiles/permuteGPAT++.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o -o permuteGPAT++ -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 28%] Linking CXX executable vcfld /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfld.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfld.dir/src/vcfld.cpp.o -o vcfld -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 29%] Linking CXX executable abba-baba /usr/bin/cmake -E cmake_link_script CMakeFiles/abba-baba.dir/link.txt --verbose=1 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now "CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o" -o abba-baba -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 29%] Built target permuteGPAT++ make -f CMakeFiles/permuteSmooth.dir/build.make CMakeFiles/permuteSmooth.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/permuteSmooth.dir/DependInfo.cmake "--color=" [ 29%] Linking CXX executable plotHaps /usr/bin/cmake -E cmake_link_script CMakeFiles/plotHaps.dir/link.txt --verbose=1 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/permuteSmooth.dir/build.make CMakeFiles/permuteSmooth.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o -o plotHaps -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 30%] Building CXX object CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o -MF CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o.d -o CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o -c /<>/src/permuteSmooth.cpp [ 30%] Linking CXX executable permuteSmooth /usr/bin/cmake -E cmake_link_script CMakeFiles/permuteSmooth.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o -o permuteSmooth -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 30%] Built target abba-baba make -f CMakeFiles/normalize-iHS.dir/build.make CMakeFiles/normalize-iHS.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/normalize-iHS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/normalize-iHS.dir/build.make CMakeFiles/normalize-iHS.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 30%] Building CXX object CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o -MF CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o.d -o CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o -c /<>/src/normalize-iHS.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 30%] Built target plotHaps make -f CMakeFiles/meltEHH.dir/build.make CMakeFiles/meltEHH.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/meltEHH.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/meltEHH.dir/build.make CMakeFiles/meltEHH.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 30%] Building CXX object CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o -MF CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o.d -o CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o -c /<>/src/meltEHH.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 30%] Built target permuteSmooth make -f CMakeFiles/vcfnullgenofields.dir/build.make CMakeFiles/vcfnullgenofields.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfnullgenofields.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfnullgenofields.dir/build.make CMakeFiles/vcfnullgenofields.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 31%] Building CXX object CMakeFiles/vcfnullgenofields.dir/src/vcfnullgenofields.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfnullgenofields.dir/src/vcfnullgenofields.cpp.o -MF CMakeFiles/vcfnullgenofields.dir/src/vcfnullgenofields.cpp.o.d -o CMakeFiles/vcfnullgenofields.dir/src/vcfnullgenofields.cpp.o -c /<>/src/vcfnullgenofields.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 31%] Built target vcfld make -f CMakeFiles/vcfaltcount.dir/build.make CMakeFiles/vcfaltcount.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfaltcount.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfaltcount.dir/build.make CMakeFiles/vcfaltcount.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 31%] Building CXX object CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o -MF CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o.d -o CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o -c /<>/src/vcfaltcount.cpp [ 32%] Linking CXX executable normalize-iHS /usr/bin/cmake -E cmake_link_script CMakeFiles/normalize-iHS.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now "CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o" -o normalize-iHS -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/meltEHH.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfnullgenofields.cpp:12: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 32%] Built target normalize-iHS make -f CMakeFiles/vcfhetcount.dir/build.make CMakeFiles/vcfhetcount.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfhetcount.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfhetcount.dir/build.make CMakeFiles/vcfhetcount.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 32%] Building CXX object CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o -MF CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o.d -o CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o -c /<>/src/vcfhetcount.cpp In file included from /<>/src/vcfaltcount.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 32%] Linking CXX executable vcfnullgenofields /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfnullgenofields.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfnullgenofields.dir/src/vcfnullgenofields.cpp.o -o vcfnullgenofields -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 33%] Linking CXX executable meltEHH /usr/bin/cmake -E cmake_link_script CMakeFiles/meltEHH.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o -o meltEHH -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 34%] Linking CXX executable vcfaltcount /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfaltcount.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o -o vcfaltcount -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfhetcount.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 34%] Built target vcfaltcount make -f CMakeFiles/vcfhethomratio.dir/build.make CMakeFiles/vcfhethomratio.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfhethomratio.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfhethomratio.dir/build.make CMakeFiles/vcfhethomratio.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 34%] Building CXX object CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o -MF CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o.d -o CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o -c /<>/src/vcfhethomratio.cpp [ 35%] Linking CXX executable vcfhetcount /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfhetcount.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o -o vcfhetcount -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 35%] Built target vcfnullgenofields make -f CMakeFiles/vcffilter.dir/build.make CMakeFiles/vcffilter.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcffilter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcffilter.dir/build.make CMakeFiles/vcffilter.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 35%] Building CXX object CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o -MF CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o.d -o CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o -c /<>/src/vcffilter.cpp In file included from /<>/src/vcfhethomratio.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 35%] Built target vcfhetcount make -f CMakeFiles/vcf2tsv.dir/build.make CMakeFiles/vcf2tsv.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcf2tsv.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcf2tsv.dir/build.make CMakeFiles/vcf2tsv.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 35%] Building CXX object CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o -MF CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o.d -o CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o -c /<>/src/vcf2tsv.cpp In file included from /<>/src/vcffilter.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 36%] Linking CXX executable vcfhethomratio /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfhethomratio.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o -o vcfhethomratio -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 36%] Built target meltEHH make -f CMakeFiles/vcfgenotypes.dir/build.make CMakeFiles/vcfgenotypes.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfgenotypes.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfgenotypes.dir/build.make CMakeFiles/vcfgenotypes.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 37%] Building CXX object CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o -MF CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o.d -o CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o -c /<>/src/vcfgenotypes.cpp [ 38%] Linking CXX executable vcffilter /usr/bin/cmake -E cmake_link_script CMakeFiles/vcffilter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o -o vcffilter -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcf2tsv.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 38%] Built target vcfhethomratio make -f CMakeFiles/vcfannotategenotypes.dir/build.make CMakeFiles/vcfannotategenotypes.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfannotategenotypes.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfannotategenotypes.dir/build.make CMakeFiles/vcfannotategenotypes.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 39%] Building CXX object CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o -MF CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o.d -o CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o -c /<>/src/vcfannotategenotypes.cpp In file included from /<>/src/vcfgenotypes.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 40%] Linking CXX executable vcf2tsv /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2tsv.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o -o vcf2tsv -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 40%] Linking CXX executable vcfgenotypes /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenotypes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o -o vcfgenotypes -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfannotategenotypes.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 40%] Built target vcfgenotypes make -f CMakeFiles/vcfcommonsamples.dir/build.make CMakeFiles/vcfcommonsamples.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfcommonsamples.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfcommonsamples.dir/build.make CMakeFiles/vcfcommonsamples.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 41%] Building CXX object CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o -MF CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o.d -o CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o -c /<>/src/vcfcommonsamples.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 41%] Built target vcf2tsv make -f CMakeFiles/vcfremovesamples.dir/build.make CMakeFiles/vcfremovesamples.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfremovesamples.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfremovesamples.dir/build.make CMakeFiles/vcfremovesamples.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 41%] Building CXX object CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o -MF CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o.d -o CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o -c /<>/src/vcfremovesamples.cpp [ 41%] Linking CXX executable vcfannotategenotypes /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfannotategenotypes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o -o vcfannotategenotypes -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 41%] Built target vcffilter make -f CMakeFiles/vcfkeepsamples.dir/build.make CMakeFiles/vcfkeepsamples.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfkeepsamples.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfkeepsamples.dir/build.make CMakeFiles/vcfkeepsamples.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 42%] Building CXX object CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o -MF CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o.d -o CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o -c /<>/src/vcfkeepsamples.cpp In file included from /<>/src/vcfcommonsamples.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfremovesamples.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 43%] Linking CXX executable vcfcommonsamples /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcommonsamples.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o -o vcfcommonsamples -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfkeepsamples.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 44%] Linking CXX executable vcfremovesamples /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfremovesamples.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o -o vcfremovesamples -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 44%] Linking CXX executable vcfkeepsamples /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfkeepsamples.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o -o vcfkeepsamples -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 44%] Built target vcfcommonsamples make -f CMakeFiles/vcfsamplenames.dir/build.make CMakeFiles/vcfsamplenames.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfsamplenames.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfsamplenames.dir/build.make CMakeFiles/vcfsamplenames.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 45%] Building CXX object CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o -MF CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o.d -o CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o -c /<>/src/vcfsamplenames.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 45%] Built target vcfkeepsamples make -f CMakeFiles/vcfgenotypecompare.dir/build.make CMakeFiles/vcfgenotypecompare.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfgenotypecompare.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfgenotypecompare.dir/build.make CMakeFiles/vcfgenotypecompare.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 46%] Building CXX object CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o -MF CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o.d -o CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o -c /<>/src/vcfgenotypecompare.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 46%] Built target vcfremovesamples make -f CMakeFiles/vcffixup.dir/build.make CMakeFiles/vcffixup.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcffixup.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcffixup.dir/build.make CMakeFiles/vcffixup.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 46%] Building CXX object CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o -MF CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o.d -o CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o -c /<>/src/vcffixup.cpp In file included from /<>/src/vcfsamplenames.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfgenotypecompare.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 46%] Linking CXX executable vcfsamplenames /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsamplenames.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o -o vcfsamplenames -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcffixup.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 46%] Built target vcfsamplenames make -f CMakeFiles/vcfclassify.dir/build.make CMakeFiles/vcfclassify.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfclassify.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfclassify.dir/build.make CMakeFiles/vcfclassify.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 47%] Building CXX object CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o -MF CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o.d -o CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o -c /<>/src/vcfclassify.cpp [ 47%] Linking CXX executable vcfgenotypecompare /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenotypecompare.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o -o vcfgenotypecompare -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 48%] Linking CXX executable vcffixup /usr/bin/cmake -E cmake_link_script CMakeFiles/vcffixup.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o -o vcffixup -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 48%] Built target vcfannotategenotypes make -f CMakeFiles/vcfsamplediff.dir/build.make CMakeFiles/vcfsamplediff.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfsamplediff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfsamplediff.dir/build.make CMakeFiles/vcfsamplediff.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 49%] Building CXX object CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o -MF CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o.d -o CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o -c /<>/src/vcfsamplediff.cpp In file included from /<>/src/vcfclassify.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 49%] Linking CXX executable vcfclassify /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfclassify.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o -o vcfclassify -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfsamplediff.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 49%] Built target vcffixup make -f CMakeFiles/vcfremoveaberrantgenotypes.dir/build.make CMakeFiles/vcfremoveaberrantgenotypes.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfremoveaberrantgenotypes.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfremoveaberrantgenotypes.dir/build.make CMakeFiles/vcfremoveaberrantgenotypes.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 49%] Building CXX object CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o -MF CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o.d -o CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o -c /<>/src/vcfremoveaberrantgenotypes.cpp [ 49%] Linking CXX executable vcfsamplediff /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsamplediff.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o -o vcfsamplediff -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 49%] Built target vcfclassify make -f CMakeFiles/vcfrandom.dir/build.make CMakeFiles/vcfrandom.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfrandom.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfrandom.dir/build.make CMakeFiles/vcfrandom.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 49%] Building CXX object CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o -MF CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o.d -o CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o -c /<>/src/vcfrandom.cpp In file included from /<>/src/vcfremoveaberrantgenotypes.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 49%] Built target vcfgenotypecompare make -f CMakeFiles/vcfparsealts.dir/build.make CMakeFiles/vcfparsealts.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfparsealts.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfparsealts.dir/build.make CMakeFiles/vcfparsealts.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 50%] Building CXX object CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o -MF CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o.d -o CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o -c /<>/src/vcfparsealts.cpp In file included from /<>/src/vcfrandom.cpp:13: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /<>/src/vcfrandom.cpp:10: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 51%] Linking CXX executable vcfremoveaberrantgenotypes /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfremoveaberrantgenotypes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o -o vcfremoveaberrantgenotypes -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 51%] Built target vcfsamplediff make -f CMakeFiles/vcfstats.dir/build.make CMakeFiles/vcfstats.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfstats.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfstats.dir/build.make CMakeFiles/vcfstats.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 52%] Building CXX object CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o -MF CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o.d -o CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o -c /<>/src/vcfstats.cpp In file included from /<>/src/vcfparsealts.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 53%] Linking CXX executable vcfrandom /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfrandom.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o -o vcfrandom -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 53%] Linking CXX executable vcfparsealts /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfparsealts.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o -o vcfparsealts -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libwfa2.so /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 53%] Built target vcfremoveaberrantgenotypes make -f CMakeFiles/vcfflatten.dir/build.make CMakeFiles/vcfflatten.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfflatten.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfflatten.dir/build.make CMakeFiles/vcfflatten.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 54%] Building CXX object CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o -MF CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o.d -o CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o -c /<>/src/vcfflatten.cpp In file included from /<>/src/vcfstats.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 54%] Built target vcfparsealts make -f CMakeFiles/vcfprimers.dir/build.make CMakeFiles/vcfprimers.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfprimers.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfprimers.dir/build.make CMakeFiles/vcfprimers.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 55%] Building CXX object CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o -MF CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o.d -o CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o -c /<>/src/vcfprimers.cpp In file included from /<>/src/vcfflatten.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 55%] Built target vcfrandom make -f CMakeFiles/vcfnumalt.dir/build.make CMakeFiles/vcfnumalt.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfnumalt.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfnumalt.dir/build.make CMakeFiles/vcfnumalt.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 56%] Building CXX object CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o -MF CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o.d -o CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o -c /<>/src/vcfnumalt.cpp [ 56%] Linking CXX executable vcfstats /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfstats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o -o vcfstats -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libwfa2.so /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfprimers.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 57%] Linking CXX executable vcfprimers /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfprimers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o -o vcfprimers -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfnumalt.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 57%] Linking CXX executable vcfflatten /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfflatten.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o -o vcfflatten -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 57%] Built target vcfprimers make -f CMakeFiles/vcfcleancomplex.dir/build.make CMakeFiles/vcfcleancomplex.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfcleancomplex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfcleancomplex.dir/build.make CMakeFiles/vcfcleancomplex.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 58%] Building CXX object CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o -MF CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o.d -o CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o -c /<>/src/vcfcleancomplex.cpp [ 58%] Linking CXX executable vcfnumalt /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfnumalt.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o -o vcfnumalt -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfcleancomplex.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 58%] Built target vcfnumalt make -f CMakeFiles/vcfintersect.dir/build.make CMakeFiles/vcfintersect.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfintersect.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfintersect.dir/build.make CMakeFiles/vcfintersect.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 58%] Building CXX object CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o -MF CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o.d -o CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o -c /<>/src/vcfintersect.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 58%] Built target vcfflatten make -f CMakeFiles/vcfannotate.dir/build.make CMakeFiles/vcfannotate.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfannotate.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfannotate.dir/build.make CMakeFiles/vcfannotate.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 58%] Linking CXX executable vcfcleancomplex /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcleancomplex.dir/link.txt --verbose=1 [ 59%] Building CXX object CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o -MF CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o.d -o CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o -c /<>/src/vcfannotate.cpp /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o -o vcfcleancomplex -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libwfa2.so /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 59%] Built target vcfstats make -f CMakeFiles/vcfallelicprimitives.dir/build.make CMakeFiles/vcfallelicprimitives.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfallelicprimitives.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfallelicprimitives.dir/build.make CMakeFiles/vcfallelicprimitives.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 59%] Building CXX object CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o -MF CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o.d -o CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o -c /<>/src/vcfallelicprimitives.cpp In file included from /<>/src/vcfintersect.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfannotate.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 59%] Built target vcfcleancomplex make -f CMakeFiles/vcfwave.dir/build.make CMakeFiles/vcfwave.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfwave.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfwave.dir/build.make CMakeFiles/vcfwave.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 60%] Building CXX object CMakeFiles/vcfwave.dir/src/vcfwave.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfwave.dir/src/vcfwave.cpp.o -MF CMakeFiles/vcfwave.dir/src/vcfwave.cpp.o.d -o CMakeFiles/vcfwave.dir/src/vcfwave.cpp.o -c /<>/src/vcfwave.cpp In file included from /<>/src/vcfallelicprimitives.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfwave.cpp:19: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /<>/src/vcfwave.cpp:11: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 60%] Linking CXX executable vcfannotate /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfannotate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o -o vcfannotate -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 61%] Linking CXX executable vcfintersect /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfintersect.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o -o vcfintersect -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 61%] Linking CXX executable vcfwave /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfwave.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfwave.dir/src/vcfwave.cpp.o -o vcfwave -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libwfa2.so /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 62%] Linking CXX executable vcfallelicprimitives /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfallelicprimitives.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o -o vcfallelicprimitives -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libwfa2.so /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 62%] Built target vcfannotate make -f CMakeFiles/vcfoverlay.dir/build.make CMakeFiles/vcfoverlay.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfoverlay.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfoverlay.dir/build.make CMakeFiles/vcfoverlay.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 63%] Building CXX object CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o -MF CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o.d -o CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o -c /<>/src/vcfoverlay.cpp In file included from /<>/src/vcfoverlay.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 63%] Built target vcfintersect make -f CMakeFiles/vcfaddinfo.dir/build.make CMakeFiles/vcfaddinfo.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfaddinfo.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfaddinfo.dir/build.make CMakeFiles/vcfaddinfo.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 63%] Building CXX object CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o -MF CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o.d -o CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o -c /<>/src/vcfaddinfo.cpp [ 63%] Linking CXX executable vcfoverlay /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfoverlay.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o -o vcfoverlay -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfaddinfo.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 63%] Built target vcfwave make -f CMakeFiles/vcfkeepinfo.dir/build.make CMakeFiles/vcfkeepinfo.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfkeepinfo.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfkeepinfo.dir/build.make CMakeFiles/vcfkeepinfo.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 63%] Building CXX object CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o -MF CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o.d -o CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o -c /<>/src/vcfkeepinfo.cpp [ 64%] Linking CXX executable vcfaddinfo /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfaddinfo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o -o vcfaddinfo -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 64%] Built target vcfallelicprimitives make -f CMakeFiles/vcfkeepgeno.dir/build.make CMakeFiles/vcfkeepgeno.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfkeepgeno.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfkeepgeno.dir/build.make CMakeFiles/vcfkeepgeno.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 64%] Building CXX object CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o -MF CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o.d -o CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o -c /<>/src/vcfkeepgeno.cpp In file included from /<>/src/vcfkeepinfo.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 64%] Built target vcfoverlay make -f CMakeFiles/vcfafpath.dir/build.make CMakeFiles/vcfafpath.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfafpath.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfafpath.dir/build.make CMakeFiles/vcfafpath.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 64%] Building CXX object CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o -MF CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o.d -o CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o -c /<>/src/vcfafpath.cpp [ 64%] Built target vcfaddinfo make -f CMakeFiles/vcfcountalleles.dir/build.make CMakeFiles/vcfcountalleles.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfcountalleles.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfcountalleles.dir/build.make CMakeFiles/vcfcountalleles.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 64%] Building CXX object CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o -MF CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o.d -o CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o -c /<>/src/vcfcountalleles.cpp [ 65%] Linking CXX executable vcfkeepinfo /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfkeepinfo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o -o vcfkeepinfo -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfkeepgeno.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfafpath.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 66%] Linking CXX executable vcfkeepgeno /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfkeepgeno.dir/link.txt --verbose=1 In file included from /<>/src/vcfcountalleles.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o -o vcfkeepgeno -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 66%] Built target vcfkeepinfo make -f CMakeFiles/vcflength.dir/build.make CMakeFiles/vcflength.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcflength.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcflength.dir/build.make CMakeFiles/vcflength.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 67%] Building CXX object CMakeFiles/vcflength.dir/src/vcflength.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcflength.dir/src/vcflength.cpp.o -MF CMakeFiles/vcflength.dir/src/vcflength.cpp.o.d -o CMakeFiles/vcflength.dir/src/vcflength.cpp.o -c /<>/src/vcflength.cpp [ 68%] Linking CXX executable vcfcountalleles /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcountalleles.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o -o vcfcountalleles -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 69%] Linking CXX executable vcfafpath /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfafpath.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o -o vcfafpath -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 69%] Built target vcfcountalleles make -f CMakeFiles/vcfdistance.dir/build.make CMakeFiles/vcfdistance.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfdistance.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfdistance.dir/build.make CMakeFiles/vcfdistance.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 69%] Building CXX object CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o -MF CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o.d -o CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o -c /<>/src/vcfdistance.cpp [ 69%] Built target vcfkeepgeno make -f CMakeFiles/vcfrandomsample.dir/build.make CMakeFiles/vcfrandomsample.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfrandomsample.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfrandomsample.dir/build.make CMakeFiles/vcfrandomsample.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 69%] Building CXX object CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o -MF CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o.d -o CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o -c /<>/src/vcfrandomsample.cpp In file included from /<>/src/vcflength.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 69%] Linking CXX executable vcflength /usr/bin/cmake -E cmake_link_script CMakeFiles/vcflength.dir/link.txt --verbose=1 [ 69%] Built target vcfafpath make -f CMakeFiles/vcfentropy.dir/build.make CMakeFiles/vcfentropy.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfentropy.dir/DependInfo.cmake "--color=" /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcflength.dir/src/vcflength.cpp.o -o vcflength -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfentropy.dir/build.make CMakeFiles/vcfentropy.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 69%] Building CXX object CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o -MF CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o.d -o CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o -c /<>/src/vcfentropy.cpp In file included from /<>/src/vcfdistance.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfrandomsample.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 70%] Linking CXX executable vcfdistance /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfdistance.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o -o vcfdistance -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 71%] Linking CXX executable vcfrandomsample /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfrandomsample.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o -o vcfrandomsample -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 71%] Built target vcflength make -f CMakeFiles/vcfglxgt.dir/build.make CMakeFiles/vcfglxgt.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfglxgt.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfglxgt.dir/build.make CMakeFiles/vcfglxgt.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 72%] Building CXX object CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o -MF CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o.d -o CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o -c /<>/src/vcfglxgt.cpp In file included from /<>/src/vcfentropy.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 72%] Built target vcfdistance make -f CMakeFiles/vcfroc.dir/build.make CMakeFiles/vcfroc.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfroc.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfroc.dir/build.make CMakeFiles/vcfroc.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 72%] Building CXX object CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o -MF CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o.d -o CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o -c /<>/src/vcfroc.cpp [ 73%] Linking CXX executable vcfentropy /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfentropy.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o -o vcfentropy -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfglxgt.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 73%] Built target vcfrandomsample make -f CMakeFiles/vcfcheck.dir/build.make CMakeFiles/vcfcheck.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfcheck.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfcheck.dir/build.make CMakeFiles/vcfcheck.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 74%] Building CXX object CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o -MF CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o.d -o CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o -c /<>/src/vcfcheck.cpp In file included from /<>/src/vcfroc.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 75%] Linking CXX executable vcfglxgt /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfglxgt.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o -o vcfglxgt -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 75%] Built target vcfentropy make -f CMakeFiles/vcfstreamsort.dir/build.make CMakeFiles/vcfstreamsort.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfstreamsort.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfstreamsort.dir/build.make CMakeFiles/vcfstreamsort.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 76%] Building CXX object CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o -MF CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o.d -o CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o -c /<>/src/vcfstreamsort.cpp In file included from /<>/src/vcfcheck.cpp:11: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 76%] Linking CXX executable vcfcheck /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcheck.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o -o vcfcheck -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfstreamsort.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 76%] Built target vcfglxgt make -f CMakeFiles/vcfuniq.dir/build.make CMakeFiles/vcfuniq.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfuniq.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfuniq.dir/build.make CMakeFiles/vcfuniq.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 77%] Building CXX object CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o -MF CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o.d -o CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o -c /<>/src/vcfuniq.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 77%] Built target vcfcheck make -f CMakeFiles/vcfuniqalleles.dir/build.make CMakeFiles/vcfuniqalleles.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfuniqalleles.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfuniqalleles.dir/build.make CMakeFiles/vcfuniqalleles.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 78%] Building CXX object CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o -MF CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o.d -o CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o -c /<>/src/vcfuniqalleles.cpp [ 79%] Linking CXX executable vcfroc /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfroc.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o -o vcfroc -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libwfa2.so /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 79%] Linking CXX executable vcfstreamsort /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfstreamsort.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o -o vcfstreamsort -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfuniqalleles.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfuniq.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 79%] Linking CXX executable vcfuniqalleles /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfuniqalleles.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o -o vcfuniqalleles -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 79%] Linking CXX executable vcfuniq /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfuniq.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o -o vcfuniq -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 79%] Built target vcfuniq make -f CMakeFiles/vcfremap.dir/build.make CMakeFiles/vcfremap.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfremap.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfremap.dir/build.make CMakeFiles/vcfremap.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 79%] Building CXX object CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o -MF CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o.d -o CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o -c /<>/src/vcfremap.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 79%] Built target vcfuniqalleles make -f CMakeFiles/vcf2fasta.dir/build.make CMakeFiles/vcf2fasta.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcf2fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcf2fasta.dir/build.make CMakeFiles/vcf2fasta.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 79%] Building CXX object CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o -MF CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o.d -o CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o -c /<>/src/vcf2fasta.cpp In file included from /<>/src/vcfremap.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcf2fasta.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 79%] Built target vcfstreamsort make -f CMakeFiles/vcfsitesummarize.dir/build.make CMakeFiles/vcfsitesummarize.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfsitesummarize.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfsitesummarize.dir/build.make CMakeFiles/vcfsitesummarize.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 80%] Building CXX object CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o -MF CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o.d -o CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o -c /<>/src/vcfsitesummarize.cpp [ 81%] Linking CXX executable vcf2fasta /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2fasta.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o -o vcf2fasta -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 81%] Built target vcfroc make -f CMakeFiles/vcfbreakmulti.dir/build.make CMakeFiles/vcfbreakmulti.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfbreakmulti.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfbreakmulti.dir/build.make CMakeFiles/vcfbreakmulti.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 82%] Building CXX object CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o -MF CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o.d -o CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o -c /<>/src/vcfbreakmulti.cpp [ 83%] Linking CXX executable vcfremap /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfremap.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o -o vcfremap -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfsitesummarize.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 83%] Linking CXX executable vcfsitesummarize /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsitesummarize.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o -o vcfsitesummarize -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfbreakmulti.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 83%] Built target vcfsitesummarize make -f CMakeFiles/vcfevenregions.dir/build.make CMakeFiles/vcfevenregions.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfevenregions.dir/DependInfo.cmake "--color=" [ 83%] Linking CXX executable vcfbreakmulti /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfbreakmulti.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o -o vcfbreakmulti -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfevenregions.dir/build.make CMakeFiles/vcfevenregions.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 83%] Building CXX object CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o -MF CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o.d -o CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o -c /<>/src/vcfevenregions.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 83%] Built target vcfremap make -f CMakeFiles/vcfcat.dir/build.make CMakeFiles/vcfcat.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfcat.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfcat.dir/build.make CMakeFiles/vcfcat.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 84%] Building CXX object CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o -MF CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o.d -o CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o -c /<>/src/vcfcat.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 84%] Built target vcf2fasta make -f CMakeFiles/vcfgenosummarize.dir/build.make CMakeFiles/vcfgenosummarize.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfgenosummarize.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfgenosummarize.dir/build.make CMakeFiles/vcfgenosummarize.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 85%] Building CXX object CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o -MF CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o.d -o CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o -c /<>/src/vcfgenosummarize.cpp In file included from /<>/src/vcfevenregions.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfcat.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 85%] Built target vcfbreakmulti make -f CMakeFiles/vcfgenosamplenames.dir/build.make CMakeFiles/vcfgenosamplenames.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfgenosamplenames.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfgenosamplenames.dir/build.make CMakeFiles/vcfgenosamplenames.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 86%] Building CXX object CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o -MF CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o.d -o CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o -c /<>/src/vcfgenosamplenames.cpp [ 87%] Linking CXX executable vcfevenregions /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfevenregions.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o -o vcfevenregions -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfgenosummarize.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 87%] Linking CXX executable vcfcat /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o -o vcfcat -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 87%] Linking CXX executable vcfgenosummarize /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenosummarize.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o -o vcfgenosummarize -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfgenosamplenames.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 87%] Built target vcfevenregions make -f CMakeFiles/vcfgeno2haplo.dir/build.make CMakeFiles/vcfgeno2haplo.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfgeno2haplo.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfgeno2haplo.dir/build.make CMakeFiles/vcfgeno2haplo.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 88%] Building CXX object CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o -MF CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o.d -o CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o -c /<>/src/vcfgeno2haplo.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 88%] Built target vcfcat make -f CMakeFiles/vcfleftalign.dir/build.make CMakeFiles/vcfleftalign.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfleftalign.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfleftalign.dir/build.make CMakeFiles/vcfleftalign.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 89%] Building CXX object CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o -MF CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o.d -o CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o -c /<>/src/vcfleftalign.cpp [ 89%] Linking CXX executable vcfgenosamplenames /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenosamplenames.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o -o vcfgenosamplenames -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfgeno2haplo.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' In file included from /<>/src/vcfleftalign.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 89%] Built target vcfgenosummarize make -f CMakeFiles/vcfcombine.dir/build.make CMakeFiles/vcfcombine.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfcombine.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfcombine.dir/build.make CMakeFiles/vcfcombine.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 90%] Building CXX object CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o -MF CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o.d -o CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o -c /<>/src/vcfcombine.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 90%] Built target vcfgenosamplenames make -f CMakeFiles/vcfgeno2alleles.dir/build.make CMakeFiles/vcfgeno2alleles.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfgeno2alleles.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfgeno2alleles.dir/build.make CMakeFiles/vcfgeno2alleles.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 91%] Building CXX object CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o -MF CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o.d -o CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o -c /<>/src/vcfgeno2alleles.cpp [ 91%] Linking CXX executable vcfleftalign /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfleftalign.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o -o vcfleftalign -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfcombine.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 91%] Linking CXX executable vcfgeno2haplo /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgeno2haplo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o -o vcfgeno2haplo -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfgeno2alleles.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 91%] Linking CXX executable vcfgeno2alleles /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgeno2alleles.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o -o vcfgeno2alleles -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 91%] Linking CXX executable vcfcombine /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcombine.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o -o vcfcombine -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 91%] Built target vcfleftalign make -f CMakeFiles/vcfindex.dir/build.make CMakeFiles/vcfindex.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfindex.dir/build.make CMakeFiles/vcfindex.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 91%] Building CXX object CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o -MF CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o.d -o CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o -c /<>/src/vcfindex.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 91%] Built target vcfgeno2alleles make -f CMakeFiles/vcf2dag.dir/build.make CMakeFiles/vcf2dag.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcf2dag.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcf2dag.dir/build.make CMakeFiles/vcf2dag.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 91%] Building CXX object CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o -MF CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o.d -o CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o -c /<>/src/vcf2dag.cpp In file included from /<>/src/vcfindex.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 92%] Linking CXX executable vcfindex /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfindex.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o -o vcfindex -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcf2dag.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 93%] Linking CXX executable vcf2dag /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2dag.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o -o vcf2dag -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 93%] Built target vcfindex make -f CMakeFiles/vcfsample2info.dir/build.make CMakeFiles/vcfsample2info.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfsample2info.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfsample2info.dir/build.make CMakeFiles/vcfsample2info.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 93%] Building CXX object CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o -MF CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o.d -o CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o -c /<>/src/vcfsample2info.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 93%] Built target vcfcombine make -f CMakeFiles/vcfqual2info.dir/build.make CMakeFiles/vcfqual2info.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfqual2info.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfqual2info.dir/build.make CMakeFiles/vcfqual2info.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 93%] Building CXX object CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o -MF CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o.d -o CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o -c /<>/src/vcfqual2info.cpp In file included from /<>/src/vcfsample2info.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 93%] Built target vcfgeno2haplo make -f CMakeFiles/vcfinfo2qual.dir/build.make CMakeFiles/vcfinfo2qual.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfinfo2qual.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfinfo2qual.dir/build.make CMakeFiles/vcfinfo2qual.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 93%] Building CXX object CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o -MF CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o.d -o CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o -c /<>/src/vcfinfo2qual.cpp In file included from /<>/src/vcfqual2info.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 93%] Built target vcf2dag make -f CMakeFiles/vcfglbound.dir/build.make CMakeFiles/vcfglbound.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfglbound.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfglbound.dir/build.make CMakeFiles/vcfglbound.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 94%] Building CXX object CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o -MF CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o.d -o CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o -c /<>/src/vcfglbound.cpp [ 95%] Linking CXX executable vcfsample2info /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsample2info.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o -o vcfsample2info -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 96%] Linking CXX executable vcfqual2info /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfqual2info.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o -o vcfqual2info -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfinfo2qual.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 97%] Linking CXX executable vcfinfo2qual /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfinfo2qual.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o -o vcfinfo2qual -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/vcfglbound.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 97%] Built target vcfqual2info make -f CMakeFiles/vcfinfosummarize.dir/build.make CMakeFiles/vcfinfosummarize.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfinfosummarize.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfinfosummarize.dir/build.make CMakeFiles/vcfinfosummarize.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 97%] Building CXX object CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o -MF CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o.d -o CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o -c /<>/src/vcfinfosummarize.cpp make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 97%] Built target vcfsample2info make -f CMakeFiles/vcfcreatemulti.dir/build.make CMakeFiles/vcfcreatemulti.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/vcfcreatemulti.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/vcfcreatemulti.dir/build.make CMakeFiles/vcfcreatemulti.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 97%] Building CXX object CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o -MF CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o.d -o CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o -c /<>/src/vcfcreatemulti.cpp [ 97%] Linking CXX executable vcfglbound /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfglbound.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o -o vcfglbound -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 97%] Built target vcfinfo2qual make -f CMakeFiles/pyvcflib.dir/build.make CMakeFiles/pyvcflib.dir/depend make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' cd /<>/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu /<>/obj-powerpc64le-linux-gnu/CMakeFiles/pyvcflib.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' make -f CMakeFiles/pyvcflib.dir/build.make CMakeFiles/pyvcflib.dir/build make[4]: Entering directory '/<>/obj-powerpc64le-linux-gnu' [ 98%] Building CXX object CMakeFiles/pyvcflib.dir/src/pythonffi.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.7\" -DVERSION=\"1.0.7\" -Dpyvcflib_EXPORTS -I/<>/include -I/<>/contrib/intervaltree -I/<>/contrib/multichoose -I/<>/contrib/filevercmp -I/<>/contrib/c-progress-bar -I/usr/include/wfa2lib -isystem /usr/include/python3.11 -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -fvisibility=hidden -MD -MT CMakeFiles/pyvcflib.dir/src/pythonffi.cpp.o -MF CMakeFiles/pyvcflib.dir/src/pythonffi.cpp.o.d -o CMakeFiles/pyvcflib.dir/src/pythonffi.cpp.o -c /<>/src/pythonffi.cpp In file included from /<>/src/vcfinfosummarize.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /<>/src/vcfcreatemulti.cpp:10: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [ 98%] Built target vcfglbound [ 99%] Linking CXX executable vcfinfosummarize /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfinfosummarize.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o -o vcfinfosummarize -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 In file included from /<>/src/pythonffi.cpp:5: /<>/src/Variant.h:650:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 650 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /<>/src/Variant.h:12: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:651:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [100%] Linking CXX executable vcfcreatemulti /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcreatemulti.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o -o vcfcreatemulti -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [100%] Built target vcfinfosummarize make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [100%] Built target vcfcreatemulti [100%] Linking CXX shared module pyvcflib.cpython-311-powerpc64le-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/pyvcflib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libvcflib-1.0.9+dfsg1-3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -flto=auto -fno-fat-lto-objects -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -shared -o pyvcflib.cpython-311-powerpc64le-linux-gnu.so CMakeFiles/pyvcflib.dir/src/pythonffi.cpp.o -Wl,-rpath,"\$ORIGIN:" libvcflib.so.2 -lhts /usr/lib/powerpc64le-linux-gnu/libcurl.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/liblzma.so /usr/lib/powerpc64le-linux-gnu/libbz2.so /usr/lib/powerpc64le-linux-gnu/libhts.so /usr/lib/powerpc64le-linux-gnu/libwfa2.so /usr/lib/powerpc64le-linux-gnu/libsmithwaterman.so /usr/lib/powerpc64le-linux-gnu/libdisorder.so /usr/lib/powerpc64le-linux-gnu/libfastahack.so -ltabixpp -lwfa2 /usr/bin/strip /<>/obj-powerpc64le-linux-gnu/pyvcflib.cpython-311-powerpc64le-linux-gnu.so make[4]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' [100%] Built target pyvcflib make[3]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-powerpc64le-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' markdown README.md > README.html make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' cp obj-powerpc64le-linux-gnu/CTestTestfile.cmake test/ ln -sf obj-powerpc64le-linux-gnu/ build cd test && ctest . Test project /<>/test Start 1: realign 1/9 Test #1: realign .......................... Passed 0.05 sec Start 2: pyvcflib 2/9 Test #2: pyvcflib ......................... Passed 0.06 sec Start 3: vcflib-api 3/9 Test #3: vcflib-api ....................... Passed 0.06 sec Start 4: vcf2tsv 4/9 Test #4: vcf2tsv .......................... Passed 0.09 sec Start 5: vcfallelicprimitives 5/9 Test #5: vcfallelicprimitives ............. Passed 0.78 sec Start 6: vcfwave 6/9 Test #6: vcfwave .......................... Passed 0.51 sec Start 7: vcffilter 7/9 Test #7: vcffilter ........................ Passed 0.15 sec Start 8: vcfnulldotslashdot 8/9 Test #8: vcfnulldotslashdot ............... Passed 0.07 sec Start 9: doc/vcfintersect 9/9 Test #9: doc/vcfintersect ................. Passed 0.05 sec 100% tests passed, 0 tests failed out of 9 Total Test time (real) = 1.84 sec cd .. && rm -f build make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=cmake dh_prep -a -O--buildsystem=cmake dh_auto_install -a -O--buildsystem=cmake cd obj-powerpc64le-linux-gnu && make -j4 install DESTDIR=/<>/libvcflib-1.0.9\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-powerpc64le-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-powerpc64le-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-powerpc64le-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/vcfecho -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfecho" to "" -- Installing: /<>/debian/tmp/usr/bin/dumpContigsFromHeader -- Set runtime path of "/<>/debian/tmp/usr/bin/dumpContigsFromHeader" to "" -- Installing: /<>/debian/tmp/usr/bin/bFst -- Set runtime path of "/<>/debian/tmp/usr/bin/bFst" to "" -- Installing: /<>/debian/tmp/usr/bin/pVst -- Set runtime path of "/<>/debian/tmp/usr/bin/pVst" to "" -- Installing: /<>/debian/tmp/usr/bin/hapLrt -- Set runtime path of "/<>/debian/tmp/usr/bin/hapLrt" to "" -- Installing: /<>/debian/tmp/usr/bin/popStats -- Set runtime path of "/<>/debian/tmp/usr/bin/popStats" to "" -- Installing: /<>/debian/tmp/usr/bin/wcFst -- Set runtime path of "/<>/debian/tmp/usr/bin/wcFst" to "" -- Installing: /<>/debian/tmp/usr/bin/iHS -- Set runtime path of "/<>/debian/tmp/usr/bin/iHS" to "" -- Installing: /<>/debian/tmp/usr/bin/segmentFst -- Set runtime path of "/<>/debian/tmp/usr/bin/segmentFst" to "" -- Installing: /<>/debian/tmp/usr/bin/segmentIhs -- Set runtime path of "/<>/debian/tmp/usr/bin/segmentIhs" to "" -- Installing: /<>/debian/tmp/usr/bin/genotypeSummary -- Set runtime path of "/<>/debian/tmp/usr/bin/genotypeSummary" to "" -- Installing: /<>/debian/tmp/usr/bin/sequenceDiversity -- Set runtime path of "/<>/debian/tmp/usr/bin/sequenceDiversity" to "" -- Installing: /<>/debian/tmp/usr/bin/pFst -- Set runtime path of "/<>/debian/tmp/usr/bin/pFst" to "" -- Installing: /<>/debian/tmp/usr/bin/smoother -- Set runtime path of "/<>/debian/tmp/usr/bin/smoother" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfld -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfld" to "" -- Installing: /<>/debian/tmp/usr/bin/plotHaps -- Set runtime path of "/<>/debian/tmp/usr/bin/plotHaps" to "" -- Installing: /<>/debian/tmp/usr/bin/abba-baba -- Set runtime path of "/<>/debian/tmp/usr/bin/abba-baba" to "" -- Installing: /<>/debian/tmp/usr/bin/permuteGPAT++ -- Set runtime path of "/<>/debian/tmp/usr/bin/permuteGPAT++" to "" -- Installing: /<>/debian/tmp/usr/bin/permuteSmooth -- Set runtime path of "/<>/debian/tmp/usr/bin/permuteSmooth" to "" -- Installing: /<>/debian/tmp/usr/bin/normalize-iHS -- Set runtime path of "/<>/debian/tmp/usr/bin/normalize-iHS" to "" -- Installing: /<>/debian/tmp/usr/bin/meltEHH -- Set runtime path of "/<>/debian/tmp/usr/bin/meltEHH" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfnullgenofields -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfnullgenofields" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfaltcount -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfaltcount" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfhetcount -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfhetcount" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfhethomratio -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfhethomratio" to "" -- Installing: /<>/debian/tmp/usr/bin/vcffilter -- Set runtime path of "/<>/debian/tmp/usr/bin/vcffilter" to "" -- Installing: /<>/debian/tmp/usr/bin/vcf2tsv -- Set runtime path of "/<>/debian/tmp/usr/bin/vcf2tsv" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgenotypes -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfgenotypes" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfannotategenotypes -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfannotategenotypes" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcommonsamples -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfcommonsamples" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfremovesamples -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfremovesamples" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfkeepsamples -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfkeepsamples" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfsamplenames -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfsamplenames" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgenotypecompare -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfgenotypecompare" to "" -- Installing: /<>/debian/tmp/usr/bin/vcffixup -- Set runtime path of "/<>/debian/tmp/usr/bin/vcffixup" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfclassify -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfclassify" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfsamplediff -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfsamplediff" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfremoveaberrantgenotypes -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfremoveaberrantgenotypes" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfrandom -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfrandom" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfparsealts -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfparsealts" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfstats -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfstats" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfflatten -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfflatten" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfprimers -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfprimers" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfnumalt -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfnumalt" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcleancomplex -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfcleancomplex" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfintersect -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfintersect" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfannotate -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfannotate" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfallelicprimitives -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfallelicprimitives" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfwave -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfwave" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfoverlay -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfoverlay" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfaddinfo -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfaddinfo" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfkeepinfo -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfkeepinfo" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfkeepgeno -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfkeepgeno" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfafpath -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfafpath" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcountalleles -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfcountalleles" to "" -- Installing: /<>/debian/tmp/usr/bin/vcflength -- Set runtime path of "/<>/debian/tmp/usr/bin/vcflength" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfdistance -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfdistance" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfrandomsample -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfrandomsample" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfentropy -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfentropy" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfglxgt -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfglxgt" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfroc -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfroc" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcheck -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfcheck" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfstreamsort -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfstreamsort" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfuniq -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfuniq" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfuniqalleles -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfuniqalleles" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfremap -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfremap" to "" -- Installing: /<>/debian/tmp/usr/bin/vcf2fasta -- Set runtime path of "/<>/debian/tmp/usr/bin/vcf2fasta" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfsitesummarize -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfsitesummarize" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfbreakmulti -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfbreakmulti" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfevenregions -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfevenregions" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcat -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfcat" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgenosummarize -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfgenosummarize" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgenosamplenames -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfgenosamplenames" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgeno2haplo -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfgeno2haplo" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfleftalign -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfleftalign" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcombine -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfcombine" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgeno2alleles -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfgeno2alleles" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfindex -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfindex" to "" -- Installing: /<>/debian/tmp/usr/bin/vcf2dag -- Set runtime path of "/<>/debian/tmp/usr/bin/vcf2dag" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfsample2info -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfsample2info" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfqual2info -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfqual2info" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfinfo2qual -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfinfo2qual" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfglbound -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfglbound" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfinfosummarize -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfinfosummarize" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcreatemulti -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfcreatemulti" to "" -- Installing: /<>/debian/tmp/usr/bin/bed2region -- Installing: /<>/debian/tmp/usr/bin/bgziptabix -- Installing: /<>/debian/tmp/usr/bin/vcf2bed.py -- Installing: /<>/debian/tmp/usr/bin/vcf2sqlite.py -- Installing: /<>/debian/tmp/usr/bin/vcfbiallelic -- Installing: /<>/debian/tmp/usr/bin/vcfclearid -- Installing: /<>/debian/tmp/usr/bin/vcfclearinfo -- Installing: /<>/debian/tmp/usr/bin/vcfcomplex -- Installing: /<>/debian/tmp/usr/bin/vcffirstheader -- Installing: /<>/debian/tmp/usr/bin/vcfgtcompare.sh -- Installing: /<>/debian/tmp/usr/bin/vcfindelproximity -- Installing: /<>/debian/tmp/usr/bin/vcfindels -- Installing: /<>/debian/tmp/usr/bin/vcfjoincalls -- Installing: /<>/debian/tmp/usr/bin/vcfmultiallelic -- Installing: /<>/debian/tmp/usr/bin/vcfmultiway -- Installing: /<>/debian/tmp/usr/bin/vcfmultiwayscripts -- Installing: /<>/debian/tmp/usr/bin/vcfnobiallelicsnps -- Installing: /<>/debian/tmp/usr/bin/vcfnoindels -- Installing: /<>/debian/tmp/usr/bin/vcfnosnps -- Installing: /<>/debian/tmp/usr/bin/vcfnulldotslashdot -- Installing: /<>/debian/tmp/usr/bin/vcfplotaltdiscrepancy.r -- Installing: /<>/debian/tmp/usr/bin/vcfplotaltdiscrepancy.sh -- Installing: /<>/debian/tmp/usr/bin/vcfplotsitediscrepancy.r -- Installing: /<>/debian/tmp/usr/bin/vcfplottstv.sh -- Installing: /<>/debian/tmp/usr/bin/vcfprintaltdiscrepancy.r -- Installing: /<>/debian/tmp/usr/bin/vcfprintaltdiscrepancy.sh -- Installing: /<>/debian/tmp/usr/bin/vcfqualfilter -- Installing: /<>/debian/tmp/usr/bin/vcfregionreduce -- Installing: /<>/debian/tmp/usr/bin/vcfregionreduce_and_cut -- Installing: /<>/debian/tmp/usr/bin/vcfregionreduce_pipe -- Installing: /<>/debian/tmp/usr/bin/vcfregionreduce_uncompressed -- Installing: /<>/debian/tmp/usr/bin/vcfremovenonATGC -- Installing: /<>/debian/tmp/usr/bin/vcfsnps -- Installing: /<>/debian/tmp/usr/bin/vcfsort -- Installing: /<>/debian/tmp/usr/bin/vcf_strip_extra_headers -- Installing: /<>/debian/tmp/usr/bin/vcfvarstats -- Installing: /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/pyvcflib.cpython-311-powerpc64le-linux-gnu.so -- Set runtime path of "/<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/pyvcflib.cpython-311-powerpc64le-linux-gnu.so" to "" -- Installing: /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libvcflib.so.2 -- Installing: /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libvcflib.so -- Installing: /<>/debian/tmp/usr/include/filevercmp.h -- Installing: /<>/debian/tmp/usr/include/IntervalTree.h -- Installing: /<>/debian/tmp/usr/include/catch.hpp -- Installing: /<>/debian/tmp/usr/include/multichoose.h -- Installing: /<>/debian/tmp/usr/include/multipermute.h -- Installing: /<>/debian/tmp/usr/include/BedReader.h -- Installing: /<>/debian/tmp/usr/include/LeftAlign.hpp -- Installing: /<>/debian/tmp/usr/include/Variant.h -- Installing: /<>/debian/tmp/usr/include/allele.hpp -- Installing: /<>/debian/tmp/usr/include/cdflib.hpp -- Installing: /<>/debian/tmp/usr/include/cigar.hpp -- Installing: /<>/debian/tmp/usr/include/convert.h -- Installing: /<>/debian/tmp/usr/include/gpatInfo.hpp -- Installing: /<>/debian/tmp/usr/include/join.h -- Installing: /<>/debian/tmp/usr/include/makeUnique.h -- Installing: /<>/debian/tmp/usr/include/mt19937ar.h -- Installing: /<>/debian/tmp/usr/include/murmur3.hpp -- Installing: /<>/debian/tmp/usr/include/pdflib.hpp -- Installing: /<>/debian/tmp/usr/include/rkmh.hpp -- Installing: /<>/debian/tmp/usr/include/rnglib.hpp -- Installing: /<>/debian/tmp/usr/include/split.h -- Installing: /<>/debian/tmp/usr/include/var.hpp -- Installing: /<>/debian/tmp/usr/include/vcf-c-api.h -- Installing: /<>/debian/tmp/usr/include/vcf-wfa.h -- Installing: /<>/debian/tmp/usr/man/man1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgenotypecompare.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgeno2alleles.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfstats.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfremap.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfrandom.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcf2dag.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcflength.1 -- Installing: /<>/debian/tmp/usr/man/man1/smoother.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfentropy.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcombine.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfannotategenotypes.1 -- Installing: /<>/debian/tmp/usr/man/man1/pFst.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfflatten.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcffixup.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfrandomsample.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcflib.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfclassify.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfkeepgeno.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcf2tsv.1 -- Installing: /<>/debian/tmp/usr/man/man1/segmentFst.1 -- Installing: /<>/debian/tmp/usr/man/man1/iHS.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfoverlay.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcffilter.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcf2fasta.1 -- Installing: /<>/debian/tmp/usr/man/man1/abba-baba.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfuniq.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfglbound.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfecho.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfaltcount.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfremovesamples.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfroc.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfwave.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfqual2info.1 -- Installing: /<>/debian/tmp/usr/man/man1/permuteSmooth.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfallelicprimitives.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfsample2info.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfaddinfo.1 -- Installing: /<>/debian/tmp/usr/man/man1/meltEHH.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfdistance.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgenotypes.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfstreamsort.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfafpath.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfkeepsamples.1 -- Installing: /<>/debian/tmp/usr/man/man1/genotypeSummary.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfinfosummarize.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcflib-api.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfindex.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfprimers.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfld.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfnulldotslashdot.1 -- Installing: /<>/debian/tmp/usr/man/man1/sequenceDiversity.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfhethomratio.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfhetcount.1 -- Installing: /<>/debian/tmp/usr/man/man1/popStats.1 -- Installing: /<>/debian/tmp/usr/man/man1/hapLrt.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcommonsamples.1 -- Installing: /<>/debian/tmp/usr/man/man1/wcFst.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfevenregions.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfsamplenames.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfleftalign.1 -- Installing: /<>/debian/tmp/usr/man/man1/plotHaps.1 -- Installing: /<>/debian/tmp/usr/man/man1/normalize-iHS.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfsitesummarize.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfnumalt.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcat.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfremoveaberrantgenotypes.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfparsealts.1 -- Installing: /<>/debian/tmp/usr/man/man1/bFst.1 -- Installing: /<>/debian/tmp/usr/man/man1/permuteGPAT++.1 -- Installing: /<>/debian/tmp/usr/man/man1/pVst.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfglxgt.1 -- Installing: /<>/debian/tmp/usr/man/man1/segmentIhs.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgeno2haplo.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfintersect.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfinfo2qual.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgenosamplenames.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfnullgenofields.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfsamplediff.1 -- Installing: /<>/debian/tmp/usr/man/man1/dumpContigsFromHeader.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfbreakmulti.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcheck.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfkeepinfo.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfuniqalleles.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcountalleles.1 -- Installing: /<>/debian/tmp/usr/man/man1/pyvcflib.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfannotate.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcreatemulti.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgenosummarize.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcleancomplex.1 make[1]: Leaving directory '/<>/obj-powerpc64le-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install find debian/lib* -name filevercmp.h -delete cp -a debian/ext/filevercmp/filevercmp.h debian/libvcflib-dev/usr/include/vcflib/ mkdir -p debian/libvcflib-dev/usr/include/intervaltree mv debian/libvcflib-dev/usr/include/vcflib/IntervalTree.h debian/libvcflib-dev/usr/include/intervaltree # Remove un-needed py so, install in separate binary package when needed find debian/ -name 'pyvcflib.cpython*.so' -delete # install pkg-config file mkdir -p /<>/debian/libvcflib-dev/usr/lib/powerpc64le-linux-gnu/pkgconfig mv libvcflib.pc /<>/debian/libvcflib-dev/usr/lib/powerpc64le-linux-gnu/pkgconfig rm -rf debian/*/usr/lib/vcflib/bin/*.R for pl in `grep -Rl '#!/usr/bin/env' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done grep: debian/libvcflib-dev/usr/lib/powerpc64le-linux-gnu/libvcflib.so: No such file or directory make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=cmake dh_installchangelogs -a -O--buildsystem=cmake dh_installman -a -O--buildsystem=cmake dh_installsystemduser -a -O--buildsystem=cmake dh_lintian -a -O--buildsystem=cmake dh_perl -a -O--buildsystem=cmake debian/rules override_dh_link make[1]: Entering directory '/<>' dh_link for rscript in debian/libvcflib-tools/usr/lib/vcflib/scripts/*.R ; do \ scriptname=$(basename $rscript) ; \ dh_link -p libvcflib-tools usr/lib/vcflib/scripts/$scriptname usr/lib/R/site-library/vcflib/$scriptname ; \ done make[1]: Leaving directory '/<>' dh_strip_nondeterminism -a -O--buildsystem=cmake dh_compress -a -O--buildsystem=cmake debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms chmod -x debian/*/usr/lib/vcflib/scripts/*.R make[1]: Leaving directory '/<>' dh_missing -a -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2dag: Unknown DWARF DW_FORM_0x1f20 4a2b6968c697053a0e23fcac86efb32b644e0694 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosamplenames: Unknown DWARF DW_FORM_0x1f20 89753f38f84e5745cb9609df622f2e91320dc5aa 4732a22309489541f4aa369d3c68bab2a6514fe7 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/permuteGPAT++: Unknown DWARF DW_FORM_0x1f20 1514a11cd2433efe2a58fea3249367d19a89bff4 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2tsv: Unknown DWARF DW_FORM_0x1f20 5650f1d8f4bd6e80b61d66d5381b7f2ba986fa59 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/segmentIhs: Unknown DWARF DW_FORM_0x1f20 e36a04d7cc5775c48eced22204cddad962b7260b debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcombine: Unknown DWARF DW_FORM_0x1f20 95509a1e2b41ae233d85685cda6f7b210414a56a debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypes: Unknown DWARF DW_FORM_0x1f20 43106a430f549b4d1bca23f5f240bc35f3f365f6 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotate: Unknown DWARF DW_FORM_0x1f20 f4df3fd54fece55121e779bbc2a72e6e27350b55 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/pVst: Unknown DWARF DW_FORM_0x1f20 a8082626dc2b1d2d47d1a23e03437706debd1ddd debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhethomratio: Unknown DWARF DW_FORM_0x1f20 bca467906d701f7dc2fad0b8b64a37e3da934f42 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcountalleles: Unknown DWARF DW_FORM_0x1f21 50baa2f6fa59c952ba8cbdca8288a0b8b1a39ab5 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfld: Unknown DWARF DW_FORM_0x1f20 b20b30502e3807290655037e99c6774977b851f6 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhetcount: Unknown DWARF DW_FORM_0x1f20 5f4bf2394ba2f766d3de26c18400961454bfebc7 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniqalleles: Unknown DWARF DW_FORM_0x1f20 9e4e84461824bf8a06f9d8b1aacdb75c32eb22f2 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/bFst: Unknown DWARF DW_FORM_0x1f20 d673ebcffbb6c925dbcd0c29955fbeba46067bfa debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcheck: Unknown DWARF DW_FORM_0x1f20 2420039ebd45aef99558e7340967f6d7488ab3e2 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/dumpContigsFromHeader: Unknown DWARF DW_FORM_0x1f20 abdb96fccf38e95e12cc73a0e7f3a58298c75316 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/abba-baba: Unknown DWARF DW_FORM_0x1f20 42b9626b5e65fc4d59f8ffed2cd4b70f26e0e5dd debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfparsealts: Unknown DWARF DW_FORM_0x1f20 35d3784c61c3d821e3cf63008da9e39b75bc6221 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfwave: Unknown DWARF DW_FORM_0x1f20 0cacd370917a418661b38c9a66affdf12e92f3c2 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcflength: Unknown DWARF DW_FORM_0x1f20 985b73a354088c22fd300f1a021f603bb67bdd0e debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/genotypeSummary: Unknown DWARF DW_FORM_0x1f20 55b9eec7fbec467e18deafeabb40c5bf5417bcba debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/sequenceDiversity: Unknown DWARF DW_FORM_0x1f20 f0ba3291fe3ad6d463f2c8f479fc95844e56631c debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/iHS: Unknown DWARF DW_FORM_0x1f20 7acc7bd93fa980b2108bbfdf4acad2263ce22c4a debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplediff: Unknown DWARF DW_FORM_0x1f20 be5d87baa7c09064b23906fbf91b262220f609c2 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaltcount: Unknown DWARF DW_FORM_0x1f20 0cbb3038d97f04fdf023a641c7a663652eeaa6c8 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/meltEHH: Unknown DWARF DW_FORM_0x1f20 725c7526e719416ae133413f73f46e713c440e80 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglbound: Unknown DWARF DW_FORM_0x1f20 9875c43b0601f1ed29dbe18d0fcbbb0d541c0f14 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcleancomplex: Unknown DWARF DW_FORM_0x1f20 3936333adb7b8d93cde9a2e1734282be747541f0 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfdistance: Unknown DWARF DW_FORM_0x1f20 5e1170c59fc163a61823bf2d667e846280fc71cb debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/pFst: Unknown DWARF DW_FORM_0x1f20 0bd33cd3310e93e965727617eb72fc1afd229ae0 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnullgenofields: Unknown DWARF DW_FORM_0x1f20 40b8956e0ac63400f8a765fe01820e2b02b6d171 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfclassify: Unknown DWARF DW_FORM_0x1f20 91eec7196327c9acdf43f1837612a0be93a4333e debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremoveaberrantgenotypes: Unknown DWARF DW_FORM_0x1f20 527a490d772e8dcbbf58b9be7cf0e7b5d93eb5a2 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandomsample: Unknown DWARF DW_FORM_0x1f20 e266e73a0dd5feab53395f0b0ba5c8b19820f489 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfo2qual: Unknown DWARF DW_FORM_0x1f20 98d7a7c4b7284667a873d09ffc7d6446e956743d debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfindex: Unknown DWARF DW_FORM_0x1f21 7a68aaeb6609c55d34f5c76074a198e3701eec2c debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfqual2info: Unknown DWARF DW_FORM_0x1f20 2997a666a3ff938acaa672e1def358ad56b52d73 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcffixup: Unknown DWARF DW_FORM_0x1f20 6fe9ebdd3afd6d6cd28898266e99462a008b2702 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfprimers: Unknown DWARF DW_FORM_0x1f20 5a6a2653aa1f2f7116bed5492d178ef7bbc6454c debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/plotHaps: Unknown DWARF DW_FORM_0x1f20 23c0a2ae589799567c3795c48afa42158b4dc159 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandom: Unknown DWARF DW_FORM_0x1f20 fe33681f5f19ec6d9ad28c372b71d347420987f6 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfoverlay: Unknown DWARF DW_FORM_0x1f20 23729c8b0d15addff29341f6133d04eda4bc5a41 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/popStats: Unknown DWARF DW_FORM_0x1f20 4f695dc6820ba008cd5aa6f5d1b4ff79b3840290 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2alleles: Unknown DWARF DW_FORM_0x1f20 70549117292c8e6356f13a8f17df6b90973c42d1 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosummarize: Unknown DWARF DW_FORM_0x1f20 5c336667133fe120d0f2ce0de9fe5ee7cd381f09 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfflatten: Unknown DWARF DW_FORM_0x1f20 ea2da3fe5d036c00ee6730828c69a579e1bc1324 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepinfo: Unknown DWARF DW_FORM_0x1f20 c5790ee2e5bfac4eea913eeba8d3c7f5cfdcfd7e debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaddinfo: Unknown DWARF DW_FORM_0x1f20 ff1158b5e4c3be63a2e779d16a1d463ec9753dd0 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/smoother: Unknown DWARF DW_FORM_0x1f20 f385a0a8412c4e177545d44aba860ed941aaa211 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotategenotypes: Unknown DWARF DW_FORM_0x1f20 b4df759450f038cd83a97084da6ce5ed0a0db301 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypecompare: Unknown DWARF DW_FORM_0x1f20 f3f3babb8db87db396ad551f9d068466a0512f91 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/permuteSmooth: Unknown DWARF DW_FORM_0x1f20 b5bf863af78c792403d68da756fc564675cbdd7e debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfbreakmulti: Unknown DWARF DW_FORM_0x1f20 9fe2263d205b5e517491a70abb97caf28d7d0bba debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfentropy: Unknown DWARF DW_FORM_0x1f21 5a1e6b71b8f0742d69c7d3cd0fad8becfb83da72 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplenames: Unknown DWARF DW_FORM_0x1f20 f753c581ea43c739dd4ade8d4c231020bfae3e4a debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfroc: Unknown DWARF DW_FORM_0x1f21 a7d253ce968a4890f2f75c47a27be7ae23097459 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/segmentFst: Unknown DWARF DW_FORM_0x1f20 4bdbd96066f82b617048dbf8fe0cecd4f26fd7c7 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsample2info: Unknown DWARF DW_FORM_0x1f20 0e2ad9d2dc4bc2ca923dfb4e8d19b961463707a7 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcat: Unknown DWARF DW_FORM_0x1f20 15d8f5933c2eeb1a822d5ad22754d63793ec6450 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniq: Unknown DWARF DW_FORM_0x1f20 23b1d90d6bb4c0c0ea14b0774fb3ab352772ba5f debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstreamsort: Unknown DWARF DW_FORM_0x1f20 815abccf086d5dacfec074e6933ece3e3348221d debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepgeno: Unknown DWARF DW_FORM_0x1f20 6741c5bae78802726302334af70105fe848b6416 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepsamples: Unknown DWARF DW_FORM_0x1f20 9cabdaed4059e2ec6262898c0b0d2805cece454f debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcommonsamples: Unknown DWARF DW_FORM_0x1f20 6d9d0e08d877c59275a7ae41f97251906bb9992b debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2fasta: Unknown DWARF DW_FORM_0x1f20 8db0bac181ecc81b615d09a7bc95592faf2eda69 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfleftalign: Unknown DWARF DW_FORM_0x1f20 bd56dbb52734bb5cea48f49f2c41f6b78d0be4fc debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnumalt: Unknown DWARF DW_FORM_0x1f20 6d455811f895faa028715d1a160b80a23b6db508 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2haplo: Unknown DWARF DW_FORM_0x1f20 a6b655081684c0bfeed4bd6aa08c0d6335ea973e debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/wcFst: Unknown DWARF DW_FORM_0x1f20 af5e2f68b5decd15d724d7cf6117e6a29d3e3bec debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfallelicprimitives: Unknown DWARF DW_FORM_0x1f20 07fe8051c4700ecbfc3590eaa843ef4b4a681c79 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/hapLrt: Unknown DWARF DW_FORM_0x1f20 7bc1b5f142b992a897640f77628ae457d0024686 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfafpath: Unknown DWARF DW_FORM_0x1f20 fabb19a36623cb7e89eb5f4acbcdd8056e5ce523 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremap: Unknown DWARF DW_FORM_0x1f20 c0a3188c968ec1021fcaeaf5631eabe4cebaef69 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/normalize-iHS: Unknown DWARF DW_FORM_0x1f20 d2d5bb0aededbdfe37815eb649cccd8c05cd5225 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfosummarize: Unknown DWARF DW_FORM_0x1f20 25b41a4bc1e67bedc9059a68cd4d3256ea6aae7a debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglxgt: Unknown DWARF DW_FORM_0x1f20 42a25cfd4ee823fc490658550ec933bcfb7198ba debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfecho: Unknown DWARF DW_FORM_0x1f20 1fd6d35c7438558bc43d1ab436c5318c6129f7a0 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfintersect: Unknown DWARF DW_FORM_0x1f20 4954b172e01b9f59652b436874b426ce168da753 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcffilter: Unknown DWARF DW_FORM_0x1f20 4d4127c621efa420b13b76fc8dae585c4e713772 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfevenregions: Unknown DWARF DW_FORM_0x1f20 dbf19350848c3714c4badae1ae84d0f83c851b90 debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsitesummarize: Unknown DWARF DW_FORM_0x1f20 d0e4cceb0e86dae9e45305b815e404b0884825ab debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcreatemulti: Unknown DWARF DW_FORM_0x1f20 9a9d21083d8808ffca6bd647c6aa4f7a5ca325ee debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstats: Unknown DWARF DW_FORM_0x1f20 1a24ba224befd778bfa0292c8ce2d930729ffa1b debugedit: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremovesamples: Unknown DWARF DW_FORM_0x1f20 b6f8c8af9779ea402adbd65c11a22e92e8edbaf1 debugedit: debian/libvcflib-tools/usr/bin/vcf2tsv: Unknown DWARF DW_FORM_0x1f20 5650f1d8f4bd6e80b61d66d5381b7f2ba986fa59 debugedit: debian/libvcflib-tools/usr/bin/vcfuniqalleles: Unknown DWARF DW_FORM_0x1f20 9e4e84461824bf8a06f9d8b1aacdb75c32eb22f2 debugedit: debian/libvcflib-tools/usr/bin/vcffixup: Unknown DWARF DW_FORM_0x1f20 6fe9ebdd3afd6d6cd28898266e99462a008b2702 debugedit: debian/libvcflib-tools/usr/bin/vcfkeepinfo: Unknown DWARF DW_FORM_0x1f20 c5790ee2e5bfac4eea913eeba8d3c7f5cfdcfd7e debugedit: debian/libvcflib-tools/usr/bin/vcfallelicprimitives: Unknown DWARF DW_FORM_0x1f20 07fe8051c4700ecbfc3590eaa843ef4b4a681c79 debugedit: debian/libvcflib-tools/usr/bin/vcffilter: Unknown DWARF DW_FORM_0x1f20 4d4127c621efa420b13b76fc8dae585c4e713772 dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libvcflib2/usr/lib/powerpc64le-linux-gnu/libvcflib.so.2 was not linked against libdisorder.so.0 (it uses none of the library's symbols) dh_installdeb -a -O--buildsystem=cmake dh_gencontrol -a -O--buildsystem=cmake dpkg-gencontrol: warning: package libvcflib-tools: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package libvcflib-tools: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a -O--buildsystem=cmake dh_builddeb -a -O--buildsystem=cmake INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing libvcflib2 (in debian/libvcflib2); do_strip: , oemstrip: pkgstriptranslations: processing libvcflib-dev (in debian/libvcflib-dev); do_strip: , oemstrip: pkgstriptranslations: processing libvcflib-tools-dbgsym (in debian/.debhelper/libvcflib-tools/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libvcflib-dev/DEBIAN/control, package libvcflib-dev, directory debian/libvcflib-dev pkgstripfiles: processing control file: debian/.debhelper/libvcflib-tools/dbgsym-root/DEBIAN/control, package libvcflib-tools-dbgsym, directory debian/.debhelper/libvcflib-tools/dbgsym-root INFO: pkgstripfiles: waiting for lock (libvcflib-dev) ... dpkg-deb: building package 'libvcflib-tools-dbgsym' in 'debian/.debhelper/scratch-space/build-libvcflib-tools/libvcflib-tools-dbgsym_1.0.9+dfsg1-3_ppc64el.deb'. INFO: pkgstripfiles: waiting for lock (libvcflib-dev) ... INFO: pkgstripfiles: waiting for lock (libvcflib-dev) ... INFO: pkgstripfiles: waiting for lock (libvcflib-dev) ... INFO: pkgstripfiles: waiting for lock (libvcflib-dev) ... Renaming libvcflib-tools-dbgsym_1.0.9+dfsg1-3_ppc64el.deb to libvcflib-tools-dbgsym_1.0.9+dfsg1-3_ppc64el.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libvcflib2/DEBIAN/control, package libvcflib2, directory debian/libvcflib2 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libvcflib2 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libvcflib2' in '../libvcflib2_1.0.9+dfsg1-3_ppc64el.deb'. Searching for duplicated docs in dependency libvcflib2... symlinking changelog.Debian.gz in libvcflib-dev to file in libvcflib2 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libvcflib-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libvcflib-dev' in '../libvcflib-dev_1.0.9+dfsg1-3_ppc64el.deb'. INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing libvcflib2-dbgsym (in debian/.debhelper/libvcflib2/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing libvcflib-tools (in debian/libvcflib-tools); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libvcflib2/dbgsym-root/DEBIAN/control, package libvcflib2-dbgsym, directory debian/.debhelper/libvcflib2/dbgsym-root dpkg-deb: building package 'libvcflib2-dbgsym' in 'debian/.debhelper/scratch-space/build-libvcflib2/libvcflib2-dbgsym_1.0.9+dfsg1-3_ppc64el.deb'. pkgstripfiles: processing control file: debian/libvcflib-tools/DEBIAN/control, package libvcflib-tools, directory debian/libvcflib-tools Searching for duplicated docs in dependency libvcflib2... symlinking changelog.Debian.gz in libvcflib-tools to file in libvcflib2 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libvcflib-tools ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libvcflib-tools' in '../libvcflib-tools_1.0.9+dfsg1-3_ppc64el.deb'. Renaming libvcflib2-dbgsym_1.0.9+dfsg1-3_ppc64el.deb to libvcflib2-dbgsym_1.0.9+dfsg1-3_ppc64el.ddeb dpkg-genbuildinfo --build=any -O../libvcflib_1.0.9+dfsg1-3_ppc64el.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../libvcflib_1.0.9+dfsg1-3_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-12-03T17:14:45Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libvcflib_1.0.9+dfsg1-3_ppc64el.changes: ---------------------------------------- Format: 1.8 Date: Sun, 03 Dec 2023 13:29:41 +0100 Source: libvcflib Binary: libvcflib-dev libvcflib-tools libvcflib2 Built-For-Profiles: noudeb Architecture: ppc64el Version: 1.0.9+dfsg1-3 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: libvcflib-dev - C++ library for parsing and manipulating VCF files (development) libvcflib-tools - C++ library for parsing and manipulating VCF files (tools) libvcflib2 - C++ library for parsing and manipulating VCF files Closes: 1057253 Changes: libvcflib (1.0.9+dfsg1-3) unstable; urgency=medium . * add support for loong64 arch Closes: #1057253 Checksums-Sha1: d2e695e16a031573c4721190ef2b4e3c7d54965e 76346 libvcflib-dev_1.0.9+dfsg1-3_ppc64el.deb 06eb27845cb03fc18344f276b823c95170a2f425 11564494 libvcflib-tools-dbgsym_1.0.9+dfsg1-3_ppc64el.ddeb b22f80b1168aba7bc0895285000d68c1d56b1842 752312 libvcflib-tools_1.0.9+dfsg1-3_ppc64el.deb ec8c80bf428b6a1e7e4abe334d071f8da6eae70c 2133490 libvcflib2-dbgsym_1.0.9+dfsg1-3_ppc64el.ddeb ed68f7c2c1a534b2158e1c033d70f496c9222f51 219692 libvcflib2_1.0.9+dfsg1-3_ppc64el.deb 237578a48724c80a93f6ee078095a2f3a011e228 9185 libvcflib_1.0.9+dfsg1-3_ppc64el.buildinfo Checksums-Sha256: 9b3fd35f0d64b7c8ba86181644f5366bb4421461d83b17089d8111fab8f6dff3 76346 libvcflib-dev_1.0.9+dfsg1-3_ppc64el.deb fb98319d7299765d2007156cae2eccaaad9df0ab46543b523292dcb53b270403 11564494 libvcflib-tools-dbgsym_1.0.9+dfsg1-3_ppc64el.ddeb a4ee73f74e454641b034813e92f0c70bf6b4d938cfcc01458c4fcf844332a6d0 752312 libvcflib-tools_1.0.9+dfsg1-3_ppc64el.deb ae7b483ca00aa2ac98d62102d51d85a11a56799c65ef2d21996a1f256934d1a8 2133490 libvcflib2-dbgsym_1.0.9+dfsg1-3_ppc64el.ddeb 6361642ffa3aad62e08e36fe02bcd8aea2cadffbff32a4543f7bb4c87fb9de23 219692 libvcflib2_1.0.9+dfsg1-3_ppc64el.deb 18cb2973c92cc37a103b31dd00ca1cd1b04ed7407e4730435a92ccd8866059e8 9185 libvcflib_1.0.9+dfsg1-3_ppc64el.buildinfo Files: 9bf08f736cd688da24ac31b864ae6b28 76346 libdevel optional libvcflib-dev_1.0.9+dfsg1-3_ppc64el.deb 43558ebf60d121e7b04c9226d546d804 11564494 debug optional libvcflib-tools-dbgsym_1.0.9+dfsg1-3_ppc64el.ddeb d4e0005ce007e34ee59b982bfdddfac6 752312 science optional libvcflib-tools_1.0.9+dfsg1-3_ppc64el.deb 306af6302f52791fa48c7b6e1da18d3b 2133490 debug optional libvcflib2-dbgsym_1.0.9+dfsg1-3_ppc64el.ddeb 138ca50a3b62cec5bab90fb83fb7c339 219692 libs optional libvcflib2_1.0.9+dfsg1-3_ppc64el.deb b142e437abd7d64c473850fba9a07cc3 9185 science optional libvcflib_1.0.9+dfsg1-3_ppc64el.buildinfo /<>/libvcflib_1.0.9+dfsg1-3_ppc64el.changes.new could not be renamed to /<>/libvcflib_1.0.9+dfsg1-3_ppc64el.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libvcflib Binary: libvcflib-dev libvcflib-tools libvcflib-tools-dbgsym libvcflib2 libvcflib2-dbgsym Architecture: ppc64el Version: 1.0.9+dfsg1-3 Checksums-Md5: 9bf08f736cd688da24ac31b864ae6b28 76346 libvcflib-dev_1.0.9+dfsg1-3_ppc64el.deb 43558ebf60d121e7b04c9226d546d804 11564494 libvcflib-tools-dbgsym_1.0.9+dfsg1-3_ppc64el.ddeb d4e0005ce007e34ee59b982bfdddfac6 752312 libvcflib-tools_1.0.9+dfsg1-3_ppc64el.deb 306af6302f52791fa48c7b6e1da18d3b 2133490 libvcflib2-dbgsym_1.0.9+dfsg1-3_ppc64el.ddeb 138ca50a3b62cec5bab90fb83fb7c339 219692 libvcflib2_1.0.9+dfsg1-3_ppc64el.deb Checksums-Sha1: d2e695e16a031573c4721190ef2b4e3c7d54965e 76346 libvcflib-dev_1.0.9+dfsg1-3_ppc64el.deb 06eb27845cb03fc18344f276b823c95170a2f425 11564494 libvcflib-tools-dbgsym_1.0.9+dfsg1-3_ppc64el.ddeb b22f80b1168aba7bc0895285000d68c1d56b1842 752312 libvcflib-tools_1.0.9+dfsg1-3_ppc64el.deb ec8c80bf428b6a1e7e4abe334d071f8da6eae70c 2133490 libvcflib2-dbgsym_1.0.9+dfsg1-3_ppc64el.ddeb ed68f7c2c1a534b2158e1c033d70f496c9222f51 219692 libvcflib2_1.0.9+dfsg1-3_ppc64el.deb Checksums-Sha256: 9b3fd35f0d64b7c8ba86181644f5366bb4421461d83b17089d8111fab8f6dff3 76346 libvcflib-dev_1.0.9+dfsg1-3_ppc64el.deb fb98319d7299765d2007156cae2eccaaad9df0ab46543b523292dcb53b270403 11564494 libvcflib-tools-dbgsym_1.0.9+dfsg1-3_ppc64el.ddeb a4ee73f74e454641b034813e92f0c70bf6b4d938cfcc01458c4fcf844332a6d0 752312 libvcflib-tools_1.0.9+dfsg1-3_ppc64el.deb ae7b483ca00aa2ac98d62102d51d85a11a56799c65ef2d21996a1f256934d1a8 2133490 libvcflib2-dbgsym_1.0.9+dfsg1-3_ppc64el.ddeb 6361642ffa3aad62e08e36fe02bcd8aea2cadffbff32a4543f7bb4c87fb9de23 219692 libvcflib2_1.0.9+dfsg1-3_ppc64el.deb Build-Origin: Ubuntu Build-Architecture: ppc64el Build-Date: Sun, 03 Dec 2023 17:14:45 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13ubuntu5), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu1), binutils (= 2.41.50.20231202-1ubuntu1), binutils-common (= 2.41.50.20231202-1ubuntu1), binutils-powerpc64le-linux-gnu (= 2.41.50.20231202-1ubuntu1), bsdextrautils (= 2.39.2-6ubuntu1), bsdutils (= 1:2.39.2-6ubuntu1), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), cmake (= 3.27.9-1), cmake-data (= 3.27.9-1), coreutils (= 9.4-2ubuntu1), cpp (= 4:13.2.0-2ubuntu1), cpp-13 (= 13.2.0-8ubuntu1), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.8ubuntu1), debianutils (= 5.14), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.1ubuntu3), dpkg-dev (= 1.22.1ubuntu3), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), g++ (= 4:13.2.0-2ubuntu1), g++-13 (= 13.2.0-8ubuntu1), gcc (= 4:13.2.0-2ubuntu1), gcc-13 (= 13.2.0-8ubuntu1), gcc-13-base (= 13.2.0-8ubuntu1), gettext (= 0.21-14), gettext-base (= 0.21-14), googletest (= 1.14.0-1), grep (= 3.11-3), groff-base (= 1.23.0-3), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), init-system-helpers (= 1.65.2ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.7.2-1ubuntu2), libasan8 (= 13.2.0-8ubuntu1), libatomic1 (= 13.2.0-8ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1build1), libaudit1 (= 1:3.1.1-1build1), libbinutils (= 2.41.50.20231202-1ubuntu1), libblkid1 (= 2.39.2-6ubuntu1), libbrotli1 (= 1.1.0-2), libbz2-1.0 (= 1.0.8-5build1), libbz2-dev (= 1.0.8-5build1), libc-bin (= 2.38-3ubuntu1), libc-dev-bin (= 2.38-3ubuntu1), libc6 (= 2.38-3ubuntu1), libc6-dev (= 2.38-3ubuntu1), libcap-ng0 (= 0.8.3-1build3), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-8ubuntu1), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41.50.20231202-1ubuntu1), libctf0 (= 2.41.50.20231202-1ubuntu1), libcurl3-gnutls (= 8.4.0-2ubuntu1), libcurl4 (= 8.4.0-2ubuntu1), libcurl4-gnutls-dev (= 8.4.0-2ubuntu1), libdb5.3 (= 5.3.28+dfsg2-4), libdebconfclient0 (= 0.271ubuntu1), libdebhelper-perl (= 13.11.8ubuntu1), libdeflate-dev (= 1.18-1), libdeflate0 (= 1.18-1), libdisorder-dev (= 0.0.2+git20130809.8062ee1-4), libdisorder0 (= 0.0.2+git20130809.8062ee1-4), libdpkg-perl (= 1.22.1ubuntu3), libdw1 (= 0.190-1), libelf1 (= 0.190-1), libexpat1 (= 2.5.0-2), libexpat1-dev (= 2.5.0-2), libfastahack-dev (= 1.0.0+dfsg-10), libfastahack0 (= 1.0.0+dfsg-10), libffi8 (= 3.4.4-2), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-8ubuntu1), libgcc-s1 (= 13.2.0-8ubuntu1), libgcrypt20 (= 1.10.2-3ubuntu1), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgnutls30 (= 3.8.1-4ubuntu6), libgomp1 (= 13.2.0-8ubuntu1), libgpg-error0 (= 1.47-3), libgssapi-krb5-2 (= 1.20.1-5build1), libgtest-dev (= 1.14.0-1), libhogweed6 (= 3.9.1-2), libhts-dev (= 1.18+ds-1), libhts3 (= 1.18+ds-1), libhtscodecs2 (= 1.5.2-1), libicu72 (= 72.1-3ubuntu3), libidn2-0 (= 2.3.4-1build1), libisl23 (= 0.26-3), libitm1 (= 13.2.0-8ubuntu1), libjansson4 (= 2.14-2), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-sphinxdoc (= 7.2.6-2), libjs-underscore (= 1.13.4~dfsg+~1.11.4-3), libjsoncpp25 (= 1.9.5-6), libk5crypto3 (= 1.20.1-5build1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-5build1), libkrb5support0 (= 1.20.1-5build1), libldap2 (= 2.6.6+dfsg-1~exp1ubuntu1), liblsan0 (= 13.2.0-8ubuntu1), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.4.5-0.1), liblzma5 (= 5.4.5-0.1), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmd0 (= 1.1.0-1), libmount1 (= 2.39.2-6ubuntu1), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libncursesw6 (= 6.4+20231121-1build1), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.58.0-1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libp11-kit0 (= 0.25.0-4ubuntu1), libpam-modules (= 1.5.2-9.1ubuntu1), libpam-modules-bin (= 1.5.2-9.1ubuntu1), libpam-runtime (= 1.5.2-9.1ubuntu1), libpam0g (= 1.5.2-9.1ubuntu1), libpcre2-8-0 (= 10.42-4), libperl5.36 (= 5.36.0-10ubuntu1), libpipeline1 (= 1.5.7-1), libpkgconf3 (= 1.8.1-2), libproc2-0 (= 2:4.0.4-2ubuntu1), libpsl5 (= 0.21.2-1build1), libpython3-dev (= 3.11.4-5ubuntu1), libpython3-stdlib (= 3.11.4-5ubuntu1), libpython3.11 (= 3.11.6-3), libpython3.11-dev (= 3.11.6-3), libpython3.11-minimal (= 3.11.6-3), libpython3.11-stdlib (= 3.11.6-3), libquadmath0 (= 13.2.0-8ubuntu1), libreadline8 (= 8.2-3), librhash0 (= 1.4.3-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg1-4), libsasl2-modules-db (= 2.1.28+dfsg1-4), libseccomp2 (= 2.5.4-2ubuntu1), libselinux1 (= 3.5-1build2), libsframe1 (= 2.41.50.20231202-1ubuntu1), libsmartcols1 (= 2.39.2-6ubuntu1), libsmithwaterman-dev (= 0.0+git20160702.2610e25-12), libsmithwaterman0 (= 0.0+git20160702.2610e25-12), libsqlite3-0 (= 3.44.2-1), libssh-4 (= 0.10.5-3ubuntu1), libssl3 (= 3.0.10-1ubuntu3), libssw-dev (= 1.1-14), libssw0 (= 1.1-14), libstdc++-13-dev (= 13.2.0-8ubuntu1), libstdc++6 (= 13.2.0-8ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 253.5-1ubuntu7), libtabixpp-dev (= 1.1.2-1), libtabixpp0 (= 1.1.2-1), libtasn1-6 (= 4.19.0-3), libtinfo6 (= 6.4+20231121-1build1), libtirpc-common (= 1.3.4+ds-1), libtirpc-dev (= 1.3.4+ds-1), libtirpc3 (= 1.3.4+ds-1), libtool (= 2.4.7-7), libtsan2 (= 13.2.0-8ubuntu1), libubsan1 (= 13.2.0-8ubuntu1), libuchardet0 (= 0.0.8-1), libudev1 (= 253.5-1ubuntu7), libunistring5 (= 1.1-2), libuuid1 (= 2.39.2-6ubuntu1), libuv1 (= 1.46.0-2), libwfa2-0 (= 2.3.3-2), libwfa2-dev (= 2.3.3-2), libxml2 (= 2.9.14+dfsg-1.3build2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.6.0-14.14), login (= 1:4.13+dfsg1-1ubuntu1), lto-disabled-list (= 44), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-1), markdown (= 1.0.1-12), mawk (= 1.3.4.20231126-1), media-types (= 10.1.0), ncurses-base (= 6.4+20231121-1build1), ncurses-bin (= 6.4+20231121-1build1), patch (= 2.7.6-7build2), perl (= 5.36.0-10ubuntu1), perl-base (= 5.36.0-10ubuntu1), perl-modules-5.36 (= 5.36.0-10ubuntu1), pkg-config (= 1.8.1-2), pkgconf (= 1.8.1-2), pkgconf-bin (= 1.8.1-2), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-2ubuntu1), pybind11-dev (= 2.11.1-2), python3 (= 3.11.4-5ubuntu1), python3-dev (= 3.11.4-5ubuntu1), python3-distutils (= 3.11.5-1), python3-lib2to3 (= 3.11.5-1), python3-minimal (= 3.11.4-5ubuntu1), python3-pybind11 (= 2.11.1-2), python3.11 (= 3.11.6-3), python3.11-dev (= 3.11.6-3), python3.11-minimal (= 3.11.6-3), readline-common (= 8.2-3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.08-3ubuntu1), tar (= 1.34+dfsg-1.2ubuntu1), tzdata (= 2023c-9ubuntu1), util-linux (= 2.39.2-6ubuntu1), xz-utils (= 5.4.5-0.1), zlib1g (= 1:1.3.dfsg-3ubuntu1), zlib1g-dev (= 1:1.3.dfsg-3ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1701606581" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libvcflib-dev_1.0.9+dfsg1-3_ppc64el.deb --------------------------------------- new Debian package, version 2.0. size 76346 bytes: control archive=1706 bytes. 1364 bytes, 28 lines control 1784 bytes, 27 lines md5sums Package: libvcflib-dev Source: libvcflib Version: 1.0.9+dfsg1-3 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 474 Depends: libvcflib2 (= 1.0.9+dfsg1-3), libdisorder-dev, libfastahack-dev, libtabixpp-dev, libsmithwaterman-dev, libssw-dev, libwfa2-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/vcflib/vcflib Description: C++ library for parsing and manipulating VCF files (development) The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors. . vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both: . * an API for parsing and operating on records of genomic variation as it can be described by the VCF format, * and a collection of command-line utilities for executing complex manipulations on VCF files. . This package contains the static library and the header files. drwxr-xr-x root/root 0 2023-12-03 12:29 ./ drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/ drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/include/ drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/include/intervaltree/ -rw-r--r-- root/root 11829 2023-12-03 12:29 ./usr/include/intervaltree/IntervalTree.h drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/include/vcflib/ -rw-r--r-- root/root 5828 2023-02-11 16:41 ./usr/include/vcflib/BedReader.h -rw-r--r-- root/root 1706 2023-02-11 16:41 ./usr/include/vcflib/LeftAlign.hpp -rw-r--r-- root/root 22605 2023-12-03 12:29 ./usr/include/vcflib/Variant.h -rw-r--r-- root/root 892 2023-02-11 16:41 ./usr/include/vcflib/allele.hpp -rw-r--r-- root/root 368608 2023-12-03 12:29 ./usr/include/vcflib/catch.hpp -rw-r--r-- root/root 6628 2023-02-11 16:41 ./usr/include/vcflib/cdflib.hpp -rw-r--r-- root/root 986 2023-02-11 16:41 ./usr/include/vcflib/cigar.hpp -rw-r--r-- root/root 697 2023-02-11 16:41 ./usr/include/vcflib/convert.h -rw-r--r-- root/root 1777 2023-12-03 12:29 ./usr/include/vcflib/filevercmp.h -rw-r--r-- root/root 2053 2023-02-11 16:41 ./usr/include/vcflib/gpatInfo.hpp -rw-r--r-- root/root 1254 2023-02-11 16:41 ./usr/include/vcflib/join.h -rw-r--r-- root/root 194 2023-02-11 16:41 ./usr/include/vcflib/makeUnique.h -rw-r--r-- root/root 6580 2023-02-11 16:41 ./usr/include/vcflib/mt19937ar.h -rw-r--r-- root/root 2155 2023-12-03 12:29 ./usr/include/vcflib/multichoose.h -rw-r--r-- root/root 3446 2023-12-03 12:29 ./usr/include/vcflib/multipermute.h -rw-r--r-- root/root 792 2023-02-11 16:41 ./usr/include/vcflib/murmur3.hpp -rw-r--r-- root/root 2507 2023-02-11 16:41 ./usr/include/vcflib/pdflib.hpp -rw-r--r-- root/root 1392 2023-02-11 16:41 ./usr/include/vcflib/rkmh.hpp -rw-r--r-- root/root 1295 2023-02-11 16:41 ./usr/include/vcflib/rnglib.hpp -rw-r--r-- root/root 1825 2023-02-11 16:41 ./usr/include/vcflib/split.h -rw-r--r-- root/root 2269 2023-02-11 16:41 ./usr/include/vcflib/var.hpp -rw-r--r-- root/root 1442 2023-02-11 16:41 ./usr/include/vcflib/vcf-c-api.h -rw-r--r-- root/root 859 2023-02-11 16:41 ./usr/include/vcflib/vcf-wfa.h drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/lib/ drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/lib/powerpc64le-linux-gnu/ lrwxrwxrwx root/root 0 2023-12-03 12:29 ./usr/lib/powerpc64le-linux-gnu/libvcflib.so -> libvcflib.so.2 drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/lib/powerpc64le-linux-gnu/pkgconfig/ -rw-r--r-- root/root 283 2023-12-03 12:29 ./usr/lib/powerpc64le-linux-gnu/pkgconfig/libvcflib.pc drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/share/ drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/share/doc/libvcflib-dev/ lrwxrwxrwx root/root 0 2023-12-03 12:29 ./usr/share/doc/libvcflib-dev/changelog.Debian.gz -> ../libvcflib2/changelog.Debian.gz -rw-r--r-- root/root 2535 2023-12-03 12:29 ./usr/share/doc/libvcflib-dev/copyright drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/share/lintian/ drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 91 2023-12-03 12:29 ./usr/share/lintian/overrides/libvcflib-dev libvcflib-tools_1.0.9+dfsg1-3_ppc64el.deb ----------------------------------------- new Debian package, version 2.0. size 752312 bytes: control archive=6889 bytes. 1577 bytes, 28 lines control 18023 bytes, 263 lines md5sums Package: libvcflib-tools Source: libvcflib Version: 1.0.9+dfsg1-3 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 6913 Depends: libc6 (>= 2.38), libdisorder0 (>= 0.0.2), libfastahack0 (>= 0.0+git20160702.bbc645f), libgcc-s1 (>= 3.4.4), libgomp1 (>= 4.2.1), libsmithwaterman0 (>= 0.0+git20160702.2610e25), libstdc++6 (>= 13.1), libtabixpp0 (>= 1.0.0), libvcflib2 (>= 1.0.9+dfsg1), libwfa2-0 (>= 2.3.3), python3:any, r-base-core, r-cran-plyr, r-cran-ggplot2, r-cran-gridbase Suggests: r-cran-pracma Section: science Priority: optional Homepage: https://github.com/vcflib/vcflib Description: C++ library for parsing and manipulating VCF files (tools) The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors. . vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both: . * an API for parsing and operating on records of genomic variation as it can be described by the VCF format, * and a collection of command-line utilities for executing complex manipulations on VCF files. . This package contains several tools using the library. drwxr-xr-x root/root 0 2023-12-03 12:29 ./ drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/ drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/bin/ -rwxr-xr-x root/root 68080 2023-12-03 12:29 ./usr/bin/vcf2tsv -rwxr-xr-x root/root 133776 2023-12-03 12:29 ./usr/bin/vcfallelicprimitives -rwxr-xr-x root/root 68272 2023-12-03 12:29 ./usr/bin/vcffilter -rwxr-xr-x root/root 67952 2023-12-03 12:29 ./usr/bin/vcffixup -rwxr-xr-x root/root 67848 2023-12-03 12:29 ./usr/bin/vcfkeepinfo -rwxr-xr-x root/root 404 2023-12-03 12:29 ./usr/bin/vcflib lrwxrwxrwx root/root 0 2023-12-03 12:29 ./usr/bin/vcfstreamsort -> ../lib/vcflib/bin/vcfstreamsort lrwxrwxrwx root/root 0 2023-12-03 12:29 ./usr/bin/vcfuniq -> ../lib/vcflib/bin/vcfuniq -rwxr-xr-x root/root 67848 2023-12-03 12:29 ./usr/bin/vcfuniqalleles drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/lib/ drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/lib/R/ drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/lib/R/site-library/vcflib/ lrwxrwxrwx root/root 0 2023-12-03 12:29 ./usr/lib/R/site-library/vcflib/plotBfst.R -> ../../../vcflib/scripts/plotBfst.R lrwxrwxrwx root/root 0 2023-12-03 12:29 ./usr/lib/R/site-library/vcflib/plotHapLrt.R -> ../../../vcflib/scripts/plotHapLrt.R lrwxrwxrwx root/root 0 2023-12-03 12:29 ./usr/lib/R/site-library/vcflib/plotHaplotypes.R -> ../../../vcflib/scripts/plotHaplotypes.R lrwxrwxrwx root/root 0 2023-12-03 12:29 ./usr/lib/R/site-library/vcflib/plotPfst.R -> ../../../vcflib/scripts/plotPfst.R lrwxrwxrwx root/root 0 2023-12-03 12:29 ./usr/lib/R/site-library/vcflib/plotSmoothed.R -> ../../../vcflib/scripts/plotSmoothed.R lrwxrwxrwx root/root 0 2023-12-03 12:29 ./usr/lib/R/site-library/vcflib/plotWCfst.R -> ../../../vcflib/scripts/plotWCfst.R lrwxrwxrwx root/root 0 2023-12-03 12:29 ./usr/lib/R/site-library/vcflib/plotXPEHH.R -> ../../../vcflib/scripts/plotXPEHH.R drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/lib/vcflib/ drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/lib/vcflib/bin/ -rwxr-xr-x root/root 68240 2023-12-03 12:29 ./usr/lib/vcflib/bin/abba-baba -rwxr-xr-x root/root 68176 2023-12-03 12:29 ./usr/lib/vcflib/bin/bFst -rwxr-xr-x root/root 423 2023-12-03 12:29 ./usr/lib/vcflib/bin/bed2region -rwxr-xr-x root/root 289 2023-12-03 12:29 ./usr/lib/vcflib/bin/bgziptabix -rwxr-xr-x root/root 67848 2023-12-03 12:29 ./usr/lib/vcflib/bin/dumpContigsFromHeader -rwxr-xr-x root/root 68144 2023-12-03 12:29 ./usr/lib/vcflib/bin/genotypeSummary -rwxr-xr-x root/root 68208 2023-12-03 12:29 ./usr/lib/vcflib/bin/hapLrt -rwxr-xr-x root/root 68272 2023-12-03 12:29 ./usr/lib/vcflib/bin/iHS -rwxr-xr-x root/root 68304 2023-12-03 12:29 ./usr/lib/vcflib/bin/meltEHH -rwxr-xr-x root/root 67944 2023-12-03 12:29 ./usr/lib/vcflib/bin/normalize-iHS -rwxr-xr-x root/root 68272 2023-12-03 12:29 ./usr/lib/vcflib/bin/pFst -rwxr-xr-x root/root 68280 2023-12-03 12:29 ./usr/lib/vcflib/bin/pVst -rwxr-xr-x root/root 67944 2023-12-03 12:29 ./usr/lib/vcflib/bin/permuteGPAT++ -rwxr-xr-x root/root 67944 2023-12-03 12:29 ./usr/lib/vcflib/bin/permuteSmooth -rwxr-xr-x root/root 68072 2023-12-03 12:29 ./usr/lib/vcflib/bin/plotHaps -rwxr-xr-x root/root 68176 2023-12-03 12:29 ./usr/lib/vcflib/bin/popStats -rwxr-xr-x root/root 67944 2023-12-03 12:29 ./usr/lib/vcflib/bin/segmentFst -rwxr-xr-x root/root 67944 2023-12-03 12:29 ./usr/lib/vcflib/bin/segmentIhs -rwxr-xr-x root/root 68304 2023-12-03 12:29 ./usr/lib/vcflib/bin/sequenceDiversity -rwxr-xr-x root/root 68200 2023-12-03 12:29 ./usr/lib/vcflib/bin/smoother -rwxr-xr-x root/root 466 2023-12-03 12:29 ./usr/lib/vcflib/bin/vcf2bed.py -rwxr-xr-x root/root 67952 2023-12-03 12:29 ./usr/lib/vcflib/bin/vcf2dag -rwxr-xr-x root/root 68048 2023-12-03 12:29 ./usr/lib/vcflib/bin/vcf2fasta -rwxr-xr-x root/root 3677 2023-12-03 12:29 ./usr/lib/vcflib/bin/vcf2sqlite.py -rwxr-xr-x root/root 68080 2023-12-03 12:29 ./usr/lib/vcflib/bin/vcf2tsv -rwxr-xr-x 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(>= 13.1), libtabixpp0 (>= 1.0.0), libwfa2-0 (>= 2.3.3) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/vcflib/vcflib Description: C++ library for parsing and manipulating VCF files The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors. . vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both: . * an API for parsing and operating on records of genomic variation as it can be described by the VCF format, * and a collection of command-line utilities for executing complex manipulations on VCF files. drwxr-xr-x root/root 0 2023-12-03 12:29 ./ drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/ drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/lib/ drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/lib/powerpc64le-linux-gnu/ -rw-r--r-- root/root 592752 2023-12-03 12:29 ./usr/lib/powerpc64le-linux-gnu/libvcflib.so.2 drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/share/ drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/share/doc/libvcflib2/ -rw-r--r-- root/root 2366 2023-12-03 12:29 ./usr/share/doc/libvcflib2/changelog.Debian.gz -rw-r--r-- root/root 2535 2023-12-03 12:29 ./usr/share/doc/libvcflib2/copyright drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/share/lintian/ drwxr-xr-x root/root 0 2023-12-03 12:29 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 88 2023-12-03 12:29 ./usr/share/lintian/overrides/libvcflib2 +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: 422736 Build-Time: 116 Distribution: noble-proposed Host Architecture: ppc64el Install-Time: 14 Job: libvcflib_1.0.9+dfsg1-3.dsc Machine Architecture: ppc64el Package: libvcflib Package-Time: 131 Source-Version: 1.0.9+dfsg1-3 Space: 422736 Status: successful Version: 1.0.9+dfsg1-3 -------------------------------------------------------------------------------- Finished at 2023-12-03T17:14:45Z Build needed 00:02:11, 422736k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-27041525 Scanning for processes to kill in build PACKAGEBUILD-27041525