https://launchpad.net/ubuntu/+source/libbpp-phyl-omics/2.4.1-2/+build/20309771 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-011 4.15.0-123-generic #126-Ubuntu SMP Wed Oct 21 09:40:04 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_193~468~ubuntu18.04.1 python3-lpbuildd_193~468~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 17 Nov 17:20:17 ntpdate[1652]: adjust time server 10.211.37.1 offset -0.000205 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20309771 --image-type chroot /home/buildd/filecache-default/6663ab897c1b9684e4da3138ea2f806b3d40e7b1 Creating target for build PACKAGEBUILD-20309771 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20309771 Starting target for build PACKAGEBUILD-20309771 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20309771 'deb http://ftpmaster.internal/ubuntu hirsute main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-security main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-updates main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-20309771 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20309771 Updating target for build PACKAGEBUILD-20309771 Get:1 http://ftpmaster.internal/ubuntu hirsute InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-security InRelease [88.4 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-updates InRelease [88.4 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main armhf Packages [1341 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [509 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/universe armhf Packages [12.3 MB] Get:8 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5333 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf Packages [223 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main Translation-en [84.3 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/universe armhf Packages [1656 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/universe Translation-en [595 kB] Fetched 22.6 MB in 8s (2785 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.30 perl-modules-5.30 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.32 perl-modules-5.32 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common coreutils cpp-10 dash dpkg dpkg-dev fakeroot g++-10 gcc-10 gcc-10-base grep libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libaudit-common libaudit1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcc1-0 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdpkg-perl libfakeroot libgcc-10-dev libgcc-s1 libgcrypt20 libgomp1 libidn2-0 libip4tc2 libmpc3 libncurses6 libncursesw6 libnpth0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libstdc++-10-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libubsan1 libudev1 linux-libc-dev ncurses-base ncurses-bin perl perl-base readline-common systemd systemd-sysv systemd-timesyncd sysvinit-utils tzdata 73 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 216 MB of archives. After this operation, 632 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute/main armhf libcrypt-dev armhf 1:4.4.17-1ubuntu1 [113 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute/main armhf libcrypt1 armhf 1:4.4.17-1ubuntu1 [86.7 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libc6-dev armhf 2.32-0ubuntu5 [1580 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libc-dev-bin armhf 2.32-0ubuntu5 [29.6 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf linux-libc-dev armhf 5.8.0-26.27 [1135 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libtirpc-common all 1.2.6-3 [7444 B] Get:7 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libtirpc-dev armhf 1.2.6-3 [175 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libtirpc3 armhf 1.2.6-3 [66.1 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main armhf libcc1-0 armhf 10.2.0-17ubuntu1 [34.7 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main armhf gcc-10-base armhf 10.2.0-17ubuntu1 [19.5 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute/main armhf libgcc-s1 armhf 10.2.0-17ubuntu1 [36.3 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main armhf libgomp1 armhf 10.2.0-17ubuntu1 [87.1 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main armhf libatomic1 armhf 10.2.0-17ubuntu1 [7264 B] Get:14 http://ftpmaster.internal/ubuntu hirsute/main armhf libasan6 armhf 10.2.0-17ubuntu1 [328 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main armhf libubsan1 armhf 10.2.0-17ubuntu1 [122 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main armhf g++-10 armhf 10.2.0-17ubuntu1 [63.0 MB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main armhf libstdc++-10-dev armhf 10.2.0-17ubuntu1 [1813 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main armhf libgcc-10-dev armhf 10.2.0-17ubuntu1 [719 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main armhf gcc-10 armhf 10.2.0-17ubuntu1 [63.7 MB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main armhf cpp-10 armhf 10.2.0-17ubuntu1 [57.0 MB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main armhf libstdc++6 armhf 10.2.0-17ubuntu1 [441 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libmpc3 armhf 1.2.0-1 [36.1 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libctf-nobfd0 armhf 2.35.1-2ubuntu1 [38.7 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libctf0 armhf 2.35.1-2ubuntu1 [37.6 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libbinutils armhf 2.35.1-2ubuntu1 [322 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf binutils-common armhf 2.35.1-2ubuntu1 [212 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf binutils armhf 2.35.1-2ubuntu1 [3368 B] Get:28 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.35.1-2ubuntu1 [2060 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libc6 armhf 2.32-0ubuntu5 [2120 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main armhf base-files armhf 11ubuntu16 [60.2 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main armhf bash armhf 5.1~rc2-1ubuntu1 [613 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf coreutils armhf 8.32-4ubuntu1 [1206 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf dpkg armhf 1.20.5ubuntu3 [1127 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main armhf dash armhf 0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1 [79.3 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main armhf grep armhf 3.6-1 [143 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libncursesw6 armhf 6.2+20200918-1 [106 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libncurses6 armhf 6.2+20200918-1 [79.9 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libtinfo6 armhf 6.2+20200918-1 [74.2 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf ncurses-bin armhf 6.2+20200918-1 [165 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf perl-modules-5.32 all 5.32.0-5 [2754 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libperl5.32 armhf 5.32.0-5 [3366 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf perl armhf 5.32.0-5 [225 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf perl-base armhf 5.32.0-5 [1423 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libdebconfclient0 armhf 0.255ubuntu1 [5692 B] Get:45 http://ftpmaster.internal/ubuntu hirsute/main armhf base-passwd armhf 3.5.48 [46.0 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libc-bin armhf 2.32-0ubuntu5 [495 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf ncurses-base all 6.2+20200918-1 [18.7 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main armhf sysvinit-utils armhf 2.96-5ubuntu1 [19.2 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main armhf libgcrypt20 armhf 1.8.7-2ubuntu1 [364 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main armhf systemd-sysv armhf 246.6-2ubuntu1 [10.3 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main armhf systemd-timesyncd armhf 246.6-2ubuntu1 [27.8 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libapparmor1 armhf 3.0.0-0ubuntu4 [30.8 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main armhf libaudit-common all 1:2.8.5-3ubuntu2 [4092 B] Get:54 http://ftpmaster.internal/ubuntu hirsute/main armhf libaudit1 armhf 1:2.8.5-3ubuntu2 [36.2 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main armhf libcap2 armhf 1:2.44-1 [14.7 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main armhf libcryptsetup12 armhf 2:2.3.4-1ubuntu1 [174 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main armhf libidn2-0 armhf 2.3.0-3 [49.4 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main armhf libip4tc2 armhf 1.8.5-3ubuntu3 [16.7 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main armhf libseccomp2 armhf 2.4.3-1ubuntu5 [32.6 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/main armhf systemd armhf 246.6-2ubuntu1 [3971 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main armhf libsystemd0 armhf 246.6-2ubuntu1 [247 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main armhf libudev1 armhf 246.6-2ubuntu1 [59.9 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main armhf libapt-pkg6.0 armhf 2.1.11 [773 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main armhf apt armhf 2.1.11 [1254 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main armhf libselinux1 armhf 3.1-2build1 [60.9 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main armhf libsemanage-common all 3.1-1build1 [10.1 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main armhf libsemanage1 armhf 3.1-1build1 [75.7 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf readline-common all 8.1~rc2-2 [54.1 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libreadline8 armhf 8.1~rc2-2 [115 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute/main armhf tzdata all 2020d-1ubuntu1 [293 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf dpkg-dev all 1.20.5ubuntu3 [758 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libdpkg-perl all 1.20.5ubuntu3 [232 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libfakeroot armhf 1.25.3-1 [23.2 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf fakeroot armhf 1.25.3-1 [60.9 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main armhf libnpth0 armhf 1.6-3 [6980 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 216 MB in 10s (21.0 MB/s) (Reading database ... 12723 files and directories 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Universal Time is now: Tue Nov 17 17:21:50 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.25.3-1) ... Setting up libncurses6:armhf (6.2+20200918-1) ... Setting up libmpc3:armhf (1.2.0-1) ... Setting up libatomic1:armhf (10.2.0-17ubuntu1) ... Setting up libncursesw6:armhf (6.2+20200918-1) ... Setting up libperl5.32:armhf (5.32.0-5) ... Setting up libubsan1:armhf (10.2.0-17ubuntu1) ... Setting up libcrypt-dev:armhf (1:4.4.17-1ubuntu1) ... Setting up libcryptsetup12:armhf (2:2.3.4-1ubuntu1) ... Setting up libbinutils:armhf (2.35.1-2ubuntu1) ... Setting up libc-dev-bin (2.32-0ubuntu5) ... Setting up readline-common (8.1~rc2-2) ... Setting up libcc1-0:armhf (10.2.0-17ubuntu1) ... Setting up cpp-10 (10.2.0-17ubuntu1) ... Setting up libctf0:armhf (2.35.1-2ubuntu1) ... Setting up libtirpc3:armhf (1.2.6-3) ... Setting up libgcc-10-dev:armhf (10.2.0-17ubuntu1) ... Setting up libreadline8:armhf (8.1~rc2-2) ... Setting up perl (5.32.0-5) ... Setting up libtirpc-dev:armhf (1.2.6-3) ... Setting up libdpkg-perl (1.20.5ubuntu3) ... Setting up libc6-dev:armhf (2.32-0ubuntu5) ... Setting up binutils-arm-linux-gnueabihf (2.35.1-2ubuntu1) ... Setting up libstdc++-10-dev:armhf (10.2.0-17ubuntu1) ... Setting up binutils (2.35.1-2ubuntu1) ... Setting up dpkg-dev (1.20.5ubuntu3) ... Setting up gcc-10 (10.2.0-17ubuntu1) ... Setting up g++-10 (10.2.0-17ubuntu1) ... Setting up systemd (246.6-2ubuntu1) ... Initializing machine ID from random generator. Setting up systemd-timesyncd (246.6-2ubuntu1) ... Setting up systemd-sysv (246.6-2ubuntu1) ... Processing triggers for libc-bin (2.32-0ubuntu5) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20309771 armhf hirsute-proposed -c chroot:build-PACKAGEBUILD-20309771 --arch=armhf --dist=hirsute-proposed --nolog libbpp-phyl-omics_2.4.1-2.dsc Initiating build PACKAGEBUILD-20309771 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-123-generic #126-Ubuntu SMP Wed Oct 21 09:40:04 UTC 2020 armv7l sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-011.buildd +==============================================================================+ | libbpp-phyl-omics 2.4.1-2 (armhf) Tue, 17 Nov 2020 17:21:53 +0000 | +==============================================================================+ Package: libbpp-phyl-omics Version: 2.4.1-2 Source Version: 2.4.1-2 Distribution: hirsute-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20309771/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbpp-phyl-omics_2.4.1-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libbpp-phyl-omics-J2Q6vz/libbpp-phyl-omics-2.4.1' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-phyl-omics-J2Q6vz' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-tZvkCU/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-tZvkCU/apt_archive ./ InRelease Get:2 copy:/<>/resolver-tZvkCU/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-tZvkCU/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-tZvkCU/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-tZvkCU/apt_archive ./ Packages [430 B] Fetched 1736 B in 0s (36.8 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-tZvkCU/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (65.2 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14642 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, d-shlibs (>= 0.82), libbpp-phyl-dev (>= 2.4.1), libbpp-seq-omics-dev (>= 2.4.1) Filtered Build-Depends: debhelper-compat (= 13), cmake, d-shlibs (>= 0.82), libbpp-phyl-dev (>= 2.4.1), libbpp-seq-omics-dev (>= 2.4.1) dpkg-deb: building package 'sbuild-build-depends-libbpp-phyl-omics-dummy' in '/<>/resolver-tZvkCU/apt_archive/sbuild-build-depends-libbpp-phyl-omics-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libbpp-phyl-omics-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-tZvkCU/apt_archive ./ InRelease Get:2 copy:/<>/resolver-tZvkCU/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-tZvkCU/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-tZvkCU/apt_archive ./ Sources [536 B] Get:5 copy:/<>/resolver-tZvkCU/apt_archive ./ Packages [618 B] Fetched 2117 B in 0s (56.8 kB/s) Reading package lists... Reading package lists... Install libbpp-phyl-omics build dependencies (apt-based resolver) ----------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libbpp-core-dev libbpp-core4 libbpp-phyl-dev libbpp-phyl12 libbpp-seq-dev libbpp-seq-omics-dev libbpp-seq-omics3 libbpp-seq12 libbrotli1 libcroco3 libcurl4 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu67 libjsoncpp1 libkrb5-26-heimdal libldap-2.4-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libwind0-heimdal libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libbpp-core-dev libbpp-core4 libbpp-phyl-dev libbpp-phyl12 libbpp-seq-dev libbpp-seq-omics-dev libbpp-seq-omics3 libbpp-seq12 libbrotli1 libcroco3 libcurl4 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu67 libjsoncpp1 libkrb5-26-heimdal libldap-2.4-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libwind0-heimdal libxml2 m4 man-db po-debconf sbuild-build-depends-libbpp-phyl-omics-dummy 0 upgraded, 67 newly installed, 0 to remove and 0 not upgraded. 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http://ftpmaster.internal/ubuntu hirsute/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:52 http://ftpmaster.internal/ubuntu hirsute/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [17.2 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main armhf dh-strip-nondeterminism all 1.9.0-1 [5192 B] Get:54 http://ftpmaster.internal/ubuntu hirsute/main armhf dwz armhf 0.13-5 [153 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main armhf libcroco3 armhf 0.6.13-1 [70.5 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main armhf gettext armhf 0.19.8.1-10build1 [835 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main armhf po-debconf all 1.0.21 [233 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main armhf debhelper all 13.2.1ubuntu1 [879 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/universe armhf libbpp-core4 armhf 2.4.1-5 [500 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/universe armhf libbpp-core-dev armhf 2.4.1-5 [953 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/universe armhf libbpp-seq12 armhf 2.4.1-5 [431 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/universe armhf libbpp-phyl12 armhf 2.4.1-4 [1413 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/universe armhf libbpp-seq-dev armhf 2.4.1-5 [755 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/universe armhf libbpp-phyl-dev armhf 2.4.1-4 [3241 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/universe armhf libbpp-seq-omics3 armhf 2.4.1-5 [189 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/universe armhf libbpp-seq-omics-dev armhf 2.4.1-5 [388 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 31.8 MB in 4s (8237 kB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 14642 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36-3ubuntu1_armhf.deb ... Unpacking bsdextrautils (2.36-3ubuntu1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../01-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-5_armhf.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../03-libpipeline1_1.5.3-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.3-2_armhf.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.38-5_armhf.deb ... Unpacking libmagic-mgc (1:5.38-5) ... 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Setting up bsdextrautils (2.36-3ubuntu1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:armhf (67.1-4) ... Setting up libmagic-mgc (1:5.38-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:armhf (2.66.2-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.2.1ubuntu1) ... Setting up libbrotli1:armhf (1.0.9-2build1) ... Setting up libnghttp2-14:armhf (1.41.0-3) ... Setting up libmagic1:armhf (1:5.38-5) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up file (1:5.38-5) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-2ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:armhf (1.40.0-1) ... Setting up libbpp-core4:armhf (2.4.1-5) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build2) ... Setting up libsigsegv2:armhf (2.12-2build1) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up d-shlibs (0.95) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-2ubuntu1) ... Setting up libssh-4:armhf (0.9.4-1ubuntu3) ... Setting up libroken18-heimdal:armhf (7.7.0+dfsg-2) ... Setting up librhash0:armhf (1.4.0-1) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up cmake-data (3.18.4-1ubuntu1) ... Setting up libbpp-seq12:armhf (2.4.1-5) ... Setting up libelf1:armhf (0.182-1) ... Setting up libxml2:armhf (2.9.10+dfsg-6.2) ... Setting up libjsoncpp1:armhf (1.7.4-3.1ubuntu2) ... Setting up libheimbase1-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libbpp-phyl12:armhf (2.4.1-4) ... Setting up libbpp-seq-omics3:armhf (2.4.1-5) ... Setting up libtool (2.4.6-14) ... Setting up libarchive13:armhf (3.4.3-2) ... Setting up libasn1-8-heimdal:armhf (7.7.0+dfsg-2) ... Setting up m4 (1.4.18-4) ... Setting up libhcrypto4-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libbpp-core-dev (2.4.1-5) ... Setting up libwind0-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libcroco3:armhf (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up automake (1:1.16.2-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libbpp-seq-dev (2.4.1-5) ... Setting up gettext (0.19.8.1-10build1) ... Setting up libhx509-5-heimdal:armhf (7.7.0+dfsg-2) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libbpp-phyl-dev:armhf (2.4.1-4) ... Setting up libbpp-seq-omics-dev (2.4.1-5) ... Setting up libkrb5-26-heimdal:armhf (7.7.0+dfsg-2) ... Setting up po-debconf (1.0.21) ... Setting up libheimntlm0-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libgssapi3-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libldap-2.4-2:armhf (2.4.53+dfsg-1ubuntu4) ... Setting up libcurl4:armhf (7.72.0-1ubuntu1) ... Setting up cmake (3.18.4-1ubuntu1) ... Setting up debhelper (13.2.1ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-libbpp-phyl-omics-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu5) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-123-generic arm64 (armv7l) Toolchain package versions: binutils_2.35.1-2ubuntu1 dpkg-dev_1.20.5ubuntu3 g++-10_10.2.0-17ubuntu1 gcc-10_10.2.0-17ubuntu1 libc6-dev_2.32-0ubuntu5 libstdc++-10-dev_10.2.0-17ubuntu1 libstdc++6_10.2.0-17ubuntu1 linux-libc-dev_5.8.0-26.27 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.11 autoconf_2.69-11.1 automake_1:1.16.2-4ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu16 base-passwd_3.5.48 bash_5.1~rc2-1ubuntu1 binutils_2.35.1-2ubuntu1 binutils-arm-linux-gnueabihf_2.35.1-2ubuntu1 binutils-common_2.35.1-2ubuntu1 bsdextrautils_2.36-3ubuntu1 bsdutils_1:2.36-3ubuntu1 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 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"tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbpp-phyl-omics_2.4.1-2.dsc dpkg-source: info: extracting libbpp-phyl-omics in /<> dpkg-source: info: unpacking libbpp-phyl-omics_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-phyl-omics_2.4.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20309771 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20309771 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20309771 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libbpp-phyl-omics dpkg-buildpackage: info: source version 2.4.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean debian/rules:40: warning: overriding recipe for target 'override_dh_makeshlibs' debian/rules:16: warning: ignoring old recipe for target 'override_dh_makeshlibs' dh clean dh_clean debian/rules binary-arch debian/rules:40: warning: overriding recipe for target 'override_dh_makeshlibs' debian/rules:16: warning: ignoring old recipe for target 'override_dh_makeshlibs' dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf .. -- The CXX compiler identification is GNU 10.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 -- includes: /usr/include -- bpp-seq-omics 3.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3.0.0 -- includes: /usr/include -- bpp-phyl 12.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-phyl.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/obj-arm-linux-gnueabihf dh_auto_build -a cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles /<>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-phyl-omics-shared.dir/build.make src/CMakeFiles/bpp-phyl-omics-shared.dir/depend make -f src/CMakeFiles/bpp-phyl-omics-static.dir/build.make src/CMakeFiles/bpp-phyl-omics-static.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/src /<>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-phyl-omics-shared.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/src /<>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-phyl-omics-static.dir/DependInfo.cmake --color= Scanning dependencies of target bpp-phyl-omics-static Scanning dependencies of target bpp-phyl-omics-shared make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-phyl-omics-shared.dir/build.make src/CMakeFiles/bpp-phyl-omics-shared.dir/build make -f src/CMakeFiles/bpp-phyl-omics-static.dir/build.make src/CMakeFiles/bpp-phyl-omics-static.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 15%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o [ 15%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o [ 15%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o [ 20%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp [ 25%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp:40: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp:40: /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 30%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp:40: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp:40: /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 35%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp [ 40%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp [ 45%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp [ 50%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp:40: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp:40: /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 55%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp:40: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp:40: /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp [ 65%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp:40: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp:40: /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 70%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp:40: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp:40: /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 75%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp [ 80%] Linking CXX shared library libbpp-phyl-omics.so cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-phyl-omics-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-phyl-omics.so.3 -o libbpp-phyl-omics.so.3.0.0 CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o /usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_symlink_library libbpp-phyl-omics.so.3.0.0 libbpp-phyl-omics.so.3 libbpp-phyl-omics.so make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 80%] Built target bpp-phyl-omics-shared [ 85%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp [ 90%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp:40: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp:40: /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp:40: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h:43, from /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp:40: /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 95%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp:40: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.h:43, from /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp:40: /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp:40: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Text/TextTools.h:49, from /usr/include/Bpp/Numeric/Range.h:43, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:51, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h:43, from /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp:40: /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [100%] Linking CXX static library libbpp-phyl-omics.a cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/bpp-phyl-omics-static.dir/cmake_clean_target.cmake cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-phyl-omics-static.dir/link.txt --verbose=1 /usr/bin/ar qc libbpp-phyl-omics.a CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o /usr/bin/ranlib libbpp-phyl-omics.a make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [100%] Built target bpp-phyl-omics-static make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a dh_auto_install -a cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-config.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-config-version.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.a -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.3.0.0 -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.3 -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so -- Installing: /<>/debian/tmp/usr/include/Bpp -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/AbstractPhylogenyReconstructionMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FilterTreeMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/AbstractDistanceEstimationMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-targets.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-targets-none.cmake make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' debian/rules override_dh_install make[1]: Entering directory '/<>' debian/rules:40: warning: overriding recipe for target 'override_dh_makeshlibs' debian/rules:16: warning: ignoring old recipe for target 'override_dh_makeshlibs' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/arm-linux-gnueabihf \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-phyl-dev package exists. --> libbpp-seq-dev package exists. --> libbpp-seq-omics-dev package exists. set -e install -d -m 755 debian/libbpp-phyl-omics-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libbpp-phyl-omics3/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.a debian/libbpp-phyl-omics-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so debian/libbpp-phyl-omics-dev/usr/lib/arm-linux-gnueabihf mv /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.3 debian/libbpp-phyl-omics3/usr/lib/arm-linux-gnueabihf mv /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.3.0.0 debian/libbpp-phyl-omics3/usr/lib/arm-linux-gnueabihf PKGDEV=libbpp-phyl-omics-dev PKGSHL=libbpp-phyl-omics3 install -d -m 755 debian/libbpp-phyl-omics-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-phyl-omics-dev/usr/include install -d -m 755 debian/libbpp-phyl-omics-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/cmake debian/libbpp-phyl-omics-dev/usr/lib/arm-linux-gnueabihf make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a debian/rules override_dh_makeshlibs make[1]: Entering directory '/<>' debian/rules:40: warning: overriding recipe for target 'override_dh_makeshlibs' debian/rules:16: warning: ignoring old recipe for target 'override_dh_makeshlibs' dh_makeshlibs 2>&1 | tee > ../dh_makeshlibs.diff make[1]: Leaving directory '/<>' dh_shlibdeps -a -a dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbpp-phyl-omics3/usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.3.0.0 found in none of the libraries dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package libbpp-phyl-omics-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing libbpp-phyl-omics-dev (in debian/libbpp-phyl-omics-dev); do_strip: , oemstrip: pkgstriptranslations: processing libbpp-phyl-omics3 (in debian/libbpp-phyl-omics3); do_strip: , oemstrip: pkgstriptranslations: processing libbpp-phyl-omics3-dbgsym (in debian/.debhelper/libbpp-phyl-omics3/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbpp-phyl-omics-dev/DEBIAN/control, package libbpp-phyl-omics-dev, directory debian/libbpp-phyl-omics-dev pkgstripfiles: processing control file: debian/.debhelper/libbpp-phyl-omics3/dbgsym-root/DEBIAN/control, package libbpp-phyl-omics3-dbgsym, directory debian/.debhelper/libbpp-phyl-omics3/dbgsym-root Searching for duplicated docs in dependency libbpp-phyl-omics3... dpkg-deb: building package 'libbpp-phyl-omics3-dbgsym' in 'debian/.debhelper/scratch-space/build-libbpp-phyl-omics3/libbpp-phyl-omics3-dbgsym_2.4.1-2_armhf.deb'. symlinking changelog.Debian.gz in libbpp-phyl-omics-dev to file in libbpp-phyl-omics3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbpp-phyl-omics-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-phyl-omics-dev' in '../libbpp-phyl-omics-dev_2.4.1-2_armhf.deb'. Renaming libbpp-phyl-omics3-dbgsym_2.4.1-2_armhf.deb to libbpp-phyl-omics3-dbgsym_2.4.1-2_armhf.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbpp-phyl-omics3/DEBIAN/control, package libbpp-phyl-omics3, directory debian/libbpp-phyl-omics3 pkgstripfiles: Truncating usr/share/doc/libbpp-phyl-omics3/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbpp-phyl-omics3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-phyl-omics3' in '../libbpp-phyl-omics3_2.4.1-2_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../libbpp-phyl-omics_2.4.1-2_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-11-17T17:26:12Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbpp-phyl-omics_2.4.1-2_armhf.changes: ---------------------------------------- Format: 1.8 Date: Tue, 17 Nov 2020 08:50:01 +0100 Source: libbpp-phyl-omics Binary: libbpp-phyl-omics-dev libbpp-phyl-omics3 Architecture: armhf Version: 2.4.1-2 Distribution: hirsute-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: libbpp-phyl-omics-dev - Bio++ Phylogenetics library: genomics components (development fil libbpp-phyl-omics3 - Bio++ Phylogenetics library: genomics components Changes: libbpp-phyl-omics (2.4.1-2) unstable; urgency=medium . [ Jelmer Vernooij ] * Use secure copyright file specification URI. * Trim trailing whitespace. . [ Andreas Tille ] * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/copyright (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Refer to specific version of license GPL-2+. 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libbpp-phyl-omics3-dbgsym_2.4.1-2_armhf.ddeb a73ab393413ad40a713042a686c90267ee4a8337 64808 libbpp-phyl-omics3_2.4.1-2_armhf.deb Checksums-Sha256: e71e9a62b27f7b3f9917a1f0550adad3f26f2d5bb4d52d50da6e79604005505c 149884 libbpp-phyl-omics-dev_2.4.1-2_armhf.deb 23a3991d3ef71e91671fc8e9a9a2cb9985c99a0402e0a23861cef027114695ce 2085728 libbpp-phyl-omics3-dbgsym_2.4.1-2_armhf.ddeb 8114a6c5c1a419952a5cc38924067e2bb885a038fb52a42d42dae10b02460412 64808 libbpp-phyl-omics3_2.4.1-2_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Tue, 17 Nov 2020 17:26:11 +0000 Build-Path: /<> Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: adduser (= 3.118ubuntu2), apt (= 2.1.11), autoconf (= 2.69-11.1), automake (= 1:1.16.2-4ubuntu1), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu16), base-passwd (= 3.5.48), bash (= 5.1~rc2-1ubuntu1), binutils (= 2.35.1-2ubuntu1), binutils-arm-linux-gnueabihf (= 2.35.1-2ubuntu1), binutils-common (= 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2.4+20151223.gitfa8646d.1-2build2), libsasl2-2 (= 2.1.27+dfsg-2ubuntu1), libsasl2-modules-db (= 2.1.27+dfsg-2ubuntu1), libseccomp2 (= 2.4.3-1ubuntu5), libselinux1 (= 3.1-2build1), libsemanage-common (= 3.1-1build1), libsemanage1 (= 3.1-1build1), libsepol1 (= 3.1-1), libsigsegv2 (= 2.12-2build1), libsmartcols1 (= 2.36-3ubuntu1), libsqlite3-0 (= 3.33.0-1), libssh-4 (= 0.9.4-1ubuntu3), libssl1.1 (= 1.1.1f-1ubuntu4), libstdc++-10-dev (= 10.2.0-17ubuntu1), libstdc++6 (= 10.2.0-17ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 246.6-2ubuntu1), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2+20200918-1), libtirpc-common (= 1.2.6-3), libtirpc-dev (= 1.2.6-3), libtirpc3 (= 1.2.6-3), libtool (= 2.4.6-14), libubsan1 (= 10.2.0-17ubuntu1), libuchardet0 (= 0.0.7-1), libudev1 (= 246.6-2ubuntu1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36-3ubuntu1), libuv1 (= 1.40.0-1), libwind0-heimdal (= 7.7.0+dfsg-2), libxml2 (= 2.9.10+dfsg-6.2), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.8.0-26.27), login (= 1:4.8.1-1ubuntu6), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.3-4ubuntu1), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20200918-1), ncurses-bin (= 6.2+20200918-1), passwd (= 1:4.8.1-1ubuntu6), patch (= 2.7.6-6), perl (= 5.32.0-5), perl-base (= 5.32.0-5), perl-modules-5.32 (= 5.32.0-5), po-debconf (= 1.0.21), procps (= 2:3.3.16-5ubuntu2), rpcsvc-proto (= 1.4.2-0ubuntu4), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.13), sysvinit-utils (= 2.96-5ubuntu1), tar (= 1.30+dfsg-7), ubuntu-keyring (= 2020.06.17.1), util-linux (= 2.36-3ubuntu1), xz-utils (= 5.2.4-1ubuntu1), zlib1g (= 1:1.2.11.dfsg-2ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1605599401" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbpp-phyl-omics-dev_2.4.1-2_armhf.deb --------------------------------------- new Debian package, version 2.0. size 149884 bytes: control archive=1452 bytes. 1032 bytes, 20 lines control 1696 bytes, 17 lines md5sums Package: libbpp-phyl-omics-dev Source: libbpp-phyl-omics Version: 2.4.1-2 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1379 Depends: libbpp-phyl-omics3 (= 2.4.1-2), libbpp-phyl-dev (>= 2.4.1), libbpp-seq-omics-dev (>= 2.4.1) Section: libdevel Priority: optional Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Phylogenetics library: genomics components (development files) Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the static library and the header files of the Bio++ classes dedicated to genomic phylogeny. drwxr-xr-x root/root 0 2020-11-17 07:50 ./ drwxr-xr-x root/root 0 2020-11-17 07:50 ./usr/ drwxr-xr-x root/root 0 2020-11-17 07:50 ./usr/include/ drwxr-xr-x root/root 0 2020-11-17 07:50 ./usr/include/Bpp/ drwxr-xr-x root/root 0 2020-11-17 07:50 ./usr/include/Bpp/Seq/ drwxr-xr-x root/root 0 2020-11-17 07:50 ./usr/include/Bpp/Seq/Io/ drwxr-xr-x root/root 0 2020-11-17 07:50 ./usr/include/Bpp/Seq/Io/Maf/ -rw-r--r-- root/root 3552 2018-08-15 09:43 ./usr/include/Bpp/Seq/Io/Maf/AbstractDistanceEstimationMafIterator.h -rw-r--r-- root/root 2933 2018-08-15 09:43 ./usr/include/Bpp/Seq/Io/Maf/AbstractPhylogenyReconstructionMafIterator.h -rw-r--r-- root/root 3104 2018-08-15 09:43 ./usr/include/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h -rw-r--r-- root/root 3262 2018-08-15 09:43 ./usr/include/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.h -rw-r--r-- root/root 3360 2018-08-15 09:43 ./usr/include/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.h -rw-r--r-- root/root 3550 2018-08-15 09:43 ./usr/include/Bpp/Seq/Io/Maf/FilterTreeMafIterator.h -rw-r--r-- root/root 4929 2018-08-15 09:43 ./usr/include/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.h -rw-r--r-- root/root 14002 2018-08-15 09:43 ./usr/include/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.h -rw-r--r-- root/root 3575 2018-08-15 09:43 ./usr/include/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h -rw-r--r-- root/root 3704 2018-08-15 09:43 ./usr/include/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h -rw-r--r-- root/root 3823 2018-08-15 09:43 ./usr/include/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h drwxr-xr-x root/root 0 2020-11-17 07:50 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-17 07:50 ./usr/lib/arm-linux-gnueabihf/ drwxr-xr-x root/root 0 2020-11-17 07:50 ./usr/lib/arm-linux-gnueabihf/cmake/ drwxr-xr-x root/root 0 2020-11-17 07:50 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/ -rw-r--r-- root/root 1722 2020-11-17 07:50 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-config-version.cmake -rw-r--r-- root/root 2379 2020-11-17 07:50 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-config.cmake -rw-r--r-- root/root 1676 2020-11-17 07:50 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-targets-none.cmake -rw-r--r-- root/root 4012 2020-11-17 07:50 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl-omics/bpp-phyl-omics-targets.cmake -rw-r--r-- root/root 1302604 2020-11-17 07:50 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.a lrwxrwxrwx root/root 0 2020-11-17 07:50 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so -> libbpp-phyl-omics.so.3 drwxr-xr-x root/root 0 2020-11-17 07:50 ./usr/share/ drwxr-xr-x root/root 0 2020-11-17 07:50 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-17 07:50 ./usr/share/doc/libbpp-phyl-omics-dev/ lrwxrwxrwx root/root 0 2020-11-17 07:50 ./usr/share/doc/libbpp-phyl-omics-dev/changelog.Debian.gz -> ../libbpp-phyl-omics3/changelog.Debian.gz -rw-r--r-- root/root 23177 2020-11-17 07:50 ./usr/share/doc/libbpp-phyl-omics-dev/copyright libbpp-phyl-omics3_2.4.1-2_armhf.deb ------------------------------------ new Debian package, version 2.0. size 64808 bytes: control archive=4828 bytes. 1071 bytes, 21 lines control 253 bytes, 3 lines md5sums 50 bytes, 1 lines shlibs 35269 bytes, 545 lines symbols 74 bytes, 2 lines triggers Package: libbpp-phyl-omics3 Source: libbpp-phyl-omics Version: 2.4.1-2 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 213 Depends: libbpp-core4 (>= 2.4.1), libbpp-phyl12 (>= 2.4.1), libbpp-seq-omics3 (>= 2.4.1), libbpp-seq12 (>= 2.4.1), libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2) Section: libs Priority: optional Multi-Arch: same Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Phylogenetics library: genomics components Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the dynamic library of the Bio++ classes dedicated to genomic phylogeny. drwxr-xr-x root/root 0 2020-11-17 07:50 ./ drwxr-xr-x root/root 0 2020-11-17 07:50 ./usr/ drwxr-xr-x root/root 0 2020-11-17 07:50 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-17 07:50 ./usr/lib/arm-linux-gnueabihf/ lrwxrwxrwx root/root 0 2020-11-17 07:50 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.3 -> libbpp-phyl-omics.so.3.0.0 -rw-r--r-- root/root 144804 2020-11-17 07:50 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.3.0.0 drwxr-xr-x root/root 0 2020-11-17 07:50 ./usr/share/ drwxr-xr-x root/root 0 2020-11-17 07:50 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-17 07:50 ./usr/share/doc/libbpp-phyl-omics3/ -rw-r--r-- root/root 1016 2020-11-17 07:50 ./usr/share/doc/libbpp-phyl-omics3/changelog.Debian.gz -rw-r--r-- root/root 23177 2020-11-17 07:50 ./usr/share/doc/libbpp-phyl-omics3/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: n/a Build-Time: 222 Distribution: hirsute-proposed Host Architecture: armhf Install-Time: 34 Job: libbpp-phyl-omics_2.4.1-2.dsc Machine Architecture: arm64 Package: libbpp-phyl-omics Package-Time: 259 Source-Version: 2.4.1-2 Space: n/a Status: successful Version: 2.4.1-2 -------------------------------------------------------------------------------- Finished at 2020-11-17T17:26:12Z Build needed 00:04:19, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20309771 Scanning for processes to kill in build PACKAGEBUILD-20309771