The option "Open links in new tab instead of in new window" refers to links inside Konqueror only.
So you did not "configure Konqueror to open links ___from other applications___ in the same opened window in a new tab."
I cannot confirm that this has been the case with Dapper either.
From which application are you opening the link? It's probably an application setting then maybe and/or you've configured something else differently on your Dapper install.
The option "Open links in new tab instead of in new window" refers to links inside Konqueror only.
So you did not "configure Konqueror to open links ___from other applications___ in the same opened window in a new tab."
I cannot confirm that this has been the case with Dapper either.
From which application are you opening the link? It's probably an application setting then maybe and/or you've configured something else differently on your Dapper install.