Ubuntu
gromacs package

can gromcs 5.1.4 versions be installed in ubuntu 16.04 LTS

Asked by Dipjyoti Talukdar

I have installed gromacs 5.1.4 version in ubuntu 16.04 LTS. I downloaded gromacs-5.1.4.tar.gz from http://www.gromacs.org/Downloads and used the following commands to install it.
tar xfz gromacs-5.1.4.tar.gz
cd gromacs-5.1.4
mkdir build
cd build
cmake .. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON
make
make check
sudo make install
source /usr/local/gromacs/bin/GMXRC

After installation when i typed pdb2gmx it is showing pdb2gmx command not found. Please help me how can i rectify the problem.

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Dipjyoti Talukdar
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Revision history for this message
actionparsnip (andrew-woodhead666) said : 		#1

What is the output of:

sudo updatedb; locate pdb2gmx

Thanks

Revision history for this message
Dipjyoti Talukdar (dipjyoti) said : 		#2

I am relatively new to simulation field. I made the mistake that i used only 'pdb2gmx'. when I used ' gmx pdb2gmx' it is working. Thankyou for reply.