Ubuntu
gmap package

gmap 2024-02-22+ds-1 source package in Ubuntu

Changelog

gmap (2024-02-22+ds-1) unstable; urgency=medium

  * New upstream version 2024-02-22+ds
  * remove_getopt_code_copy.patch: refresh.
  * patch simd_fixes: refresh.
  * missing-include.patch: delete: file removed upstream.

 -- Étienne Mollier <email address hidden>  Mon, 26 Feb 2024 21:01:08 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
amd64 arm64 armel armhf i386 loong64 mips64el mipsel ppc64el riscv64
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
gmap_2024-02-22+ds-1.dsc 2.2 KiB 5e356cd7fc314d486ee1b68cf32008dfcdd55c50835f7267adbf7ab1ccdfd63f
gmap_2024-02-22+ds.orig.tar.xz 2.3 MiB 5e700517f07b3447a0c38c60417fe8abbc8e2797da478db7d1e20cbd793858a8
gmap_2024-02-22+ds-1.debian.tar.xz 12.9 KiB dbb31386294d63152db9204090cdf64343b6472effceda7f16b00a71e2500e8a

Available diffs

No changes file available.

Binary packages built by this source

gmap: spliced and SNP-tolerant alignment for mRNA and short reads

 This package contains the programs GMAP and GSNAP as well as
 utilities to manage genome databases in GMAP/GSNAP format.
 GMAP (Genomic Mapping and Alignment Program) is a tool for aligning
 EST, mRNA and cDNA sequences.
 GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for
 aligning single-end and paired-end transcriptome reads.
 Both tools can use a database of
  * known splice sites and identify novel splice sites.
  * known single-nucleotide polymorphisms (SNPs).
 GSNAP can align bisulfite-treated DNA.

gmap-dbgsym: debug symbols for gmap