Ubuntu
gmap package

gmap 2023-12-01+ds-1 source package in Ubuntu

Changelog

gmap (2023-12-01+ds-1) unstable; urgency=medium

  * New upstream version
  * remove_getopt_code_copy.patch: refresh.
  * simd_fixes: patch refresh.
  * missing-include.patch: new.
    This patch fixes a build failure when targeting non-simd machines.

 -- Étienne Mollier <email address hidden>  Fri, 08 Dec 2023 13:10:38 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
amd64 arm64 armel armhf i386 mips64el mipsel ppc64el riscv64
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
gmap_2023-12-01+ds-1.dsc 2.2 KiB d013cdc09229ff8be625c647f3bb72fbc06573c6a87f3530318dcde99da71649
gmap_2023-12-01+ds.orig.tar.xz 2.3 MiB 7d478a769885e343648d357a82638d839ad1cbbcd5229505f99fa2b559f3e3a3
gmap_2023-12-01+ds-1.debian.tar.xz 12.9 KiB dfb2f35e324cf8ffaa29f85f7e254e8e289d47b197cd1eea38b2b16d11048afc

No changes file available.

Binary packages built by this source

gmap: spliced and SNP-tolerant alignment for mRNA and short reads

 This package contains the programs GMAP and GSNAP as well as
 utilities to manage genome databases in GMAP/GSNAP format.
 GMAP (Genomic Mapping and Alignment Program) is a tool for aligning
 EST, mRNA and cDNA sequences.
 GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for
 aligning single-end and paired-end transcriptome reads.
 Both tools can use a database of
  * known splice sites and identify novel splice sites.
  * known single-nucleotide polymorphisms (SNPs).
 GSNAP can align bisulfite-treated DNA.

gmap-dbgsym: debug symbols for gmap