Ubuntu
gmap package

gmap 2023-06-01+ds-1 source package in Ubuntu

Changelog

gmap (2023-06-01+ds-1) unstable; urgency=medium

  [ Andreas Tille ]
  * New upstream version
  * Standards-Version: 4.6.2 (routine-update)

  [ Michael R. Crusoe ]
  * Use debian package of SIMDe instead of code-copy.
  * d/patches/simd_fixes: fix compiling "lower" SIMD levels on processors that
    have more advanced features.
  * d/rules: build all SIMD variants for x86-64

 -- Andreas Tille <email address hidden>  Thu, 13 Jul 2023 14:30:43 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
amd64 arm64 armel armhf i386 mips64el mipsel ppc64el riscv64
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

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File Size SHA-256 Checksum
gmap_2023-06-01+ds-1.dsc 2.2 KiB 83f96a5e5194ae5da5bee0c3fed2a37259f505b175e10aa1abf21a5500168c89
gmap_2023-06-01+ds.orig.tar.xz 2.2 MiB 75a3228075e492a9bca8e2103eab27d9beeadc972267859864a6b9b07888303f
gmap_2023-06-01+ds-1.debian.tar.xz 12.4 KiB 0ffc08abf03fe3c24abdfe9b60072c91ea21b27844380f3b4b656ebdf6bde4e5

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Binary packages built by this source

gmap: spliced and SNP-tolerant alignment for mRNA and short reads

 This package contains the programs GMAP and GSNAP as well as
 utilities to manage genome databases in GMAP/GSNAP format.
 GMAP (Genomic Mapping and Alignment Program) is a tool for aligning
 EST, mRNA and cDNA sequences.
 GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for
 aligning single-end and paired-end transcriptome reads.
 Both tools can use a database of
  * known splice sites and identify novel splice sites.
  * known single-nucleotide polymorphisms (SNPs).
 GSNAP can align bisulfite-treated DNA.

gmap-dbgsym: debug symbols for gmap