RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 3.2.0-1429-omap4 #38-Ubuntu SMP PREEMPT Thu Mar 28 19:33:32 UTC 2013 armv7l Buildd toolchain package versions: launchpad-buildd_114-0~53~0.IS.08.04 python-lpbuildd_114-0~53~0.IS.08.04 bzr_2.5.1-0ubuntu2. Syncing the system clock with the buildd NTP service... 2 Jul 17:59:16 ntpdate[25211]: adjust time server 10.211.37.1 offset -0.000522 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'ba51e6eeda3845fb3b7a30f9b258325e0ade997e', '/home/buildd/filecache-default/c219ff4263fbebe8b03d7ffa1d47a3840a02f1e5'] Unpacking chroot for build ba51e6eeda3845fb3b7a30f9b258325e0ade997e RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'ba51e6eeda3845fb3b7a30f9b258325e0ade997e'] Mounting chroot for build ba51e6eeda3845fb3b7a30f9b258325e0ade997e RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'ba51e6eeda3845fb3b7a30f9b258325e0ade997e', 'deb http://ftpmaster.internal/ubuntu saucy main universe', 'deb http://ftpmaster.internal/ubuntu saucy-security main universe', 'deb http://ftpmaster.internal/ubuntu saucy-updates main universe', 'deb http://ftpmaster.internal/ubuntu saucy-proposed main universe'] Overriding sources.list in build-ba51e6eeda3845fb3b7a30f9b258325e0ade997e RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'ba51e6eeda3845fb3b7a30f9b258325e0ade997e', 'armhf'] Updating debian chroot for build ba51e6eeda3845fb3b7a30f9b258325e0ade997e Get:1 http://ftpmaster.internal saucy Release.gpg [933 B] Get:2 http://ftpmaster.internal saucy-security Release.gpg [933 B] Get:3 http://ftpmaster.internal saucy-updates Release.gpg [933 B] Get:4 http://ftpmaster.internal saucy-proposed Release.gpg [933 B] Get:5 http://ftpmaster.internal saucy Release [40.8 kB] Get:6 http://ftpmaster.internal saucy-security Release [40.8 kB] Get:7 http://ftpmaster.internal saucy-updates Release [40.8 kB] Get:8 http://ftpmaster.internal saucy-proposed Release [40.8 kB] Get:9 http://ftpmaster.internal saucy/main armhf Packages [1194 kB] Get:10 http://ftpmaster.internal saucy/universe armhf Packages [5409 kB] Get:11 http://ftpmaster.internal saucy/main Translation-en [700 kB] Get:12 http://ftpmaster.internal saucy/universe Translation-en [3841 kB] Get:13 http://ftpmaster.internal saucy-security/main armhf Packages [14 B] Get:14 http://ftpmaster.internal saucy-security/universe armhf Packages [14 B] Get:15 http://ftpmaster.internal saucy-security/main Translation-en [14 B] Get:16 http://ftpmaster.internal saucy-security/universe Translation-en [14 B] Get:17 http://ftpmaster.internal saucy-updates/main armhf Packages [14 B] Get:18 http://ftpmaster.internal saucy-updates/universe armhf Packages [14 B] Get:19 http://ftpmaster.internal saucy-updates/main Translation-en [14 B] Get:20 http://ftpmaster.internal saucy-updates/universe Translation-en [14 B] Get:21 http://ftpmaster.internal saucy-proposed/main armhf Packages [21.6 kB] Get:22 http://ftpmaster.internal saucy-proposed/universe armhf Packages [77.7 kB] Get:23 http://ftpmaster.internal saucy-proposed/main Translation-en [17.3 kB] Get:24 http://ftpmaster.internal saucy-proposed/universe Translation-en [69.7 kB] Ign http://archive-team.internal saucy Release.gpg Get:25 http://archive-team.internal saucy Release [728 B] Get:26 http://archive-team.internal saucy/main armhf Packages Ign http://archive-team.internal saucy/main Translation-en Fetched 11.5 MB in 49s (230 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libsasl2-modules libssl1.0.0 The following packages will be upgraded: binutils cpp cpp-4.8 e2fslibs e2fsprogs findutils g++ g++-4.8 gcc gcc-4.8 gcc-4.8-base libasan0 libasn1-8-heimdal libatomic1 libcomerr2 libcurl3-gnutls libdbus-1-3 libgcc-4.8-dev libgcc1 libgmp10 libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libkrb5-26-heimdal libp11-kit0 libroken18-heimdal libsasl2-2 libsqlite3-0 libss2 libstdc++-4.8-dev libstdc++6 libwind0-heimdal linux-libc-dev login lsb-base passwd patch pkg-create-dbgsym sensible-utils upstart 43 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 29.5 MB of archives. After this operation, 2168 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! e2fslibs e2fsprogs findutils login libgomp1 gcc-4.8-base libstdc++6 libasan0 libatomic1 cpp-4.8 binutils libstdc++-4.8-dev g++-4.8 gcc-4.8 libgcc-4.8-dev libgcc1 libgmp10 libcomerr2 libss2 libsqlite3-0 libssl1.0.0 libdbus-1-3 libroken18-heimdal libasn1-8-heimdal libcurl3-gnutls libhcrypto4-heimdal libheimbase1-heimdal libwind0-heimdal libhx509-5-heimdal libkrb5-26-heimdal libheimntlm0-heimdal libgssapi3-heimdal libp11-kit0 libsasl2-2 libsasl2-modules lsb-base passwd sensible-utils upstart cpp gcc g++ linux-libc-dev patch pkg-create-dbgsym Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ saucy/main e2fslibs armhf 1.42.8-1ubuntu1 [181 kB] Get:2 http://ftpmaster.internal/ubuntu/ saucy/main e2fsprogs armhf 1.42.8-1ubuntu1 [977 kB] Get:3 http://ftpmaster.internal/ubuntu/ saucy/main findutils armhf 4.4.2-6ubuntu1 [286 kB] Get:4 http://ftpmaster.internal/ubuntu/ saucy/main login armhf 1:4.1.5.1-1ubuntu5 [316 kB] Get:5 http://ftpmaster.internal/ubuntu/ saucy/main libgomp1 armhf 4.8.1-5ubuntu1 [25.1 kB] Get:6 http://ftpmaster.internal/ubuntu/ saucy/main gcc-4.8-base armhf 4.8.1-5ubuntu1 [16.4 kB] Get:7 http://ftpmaster.internal/ubuntu/ saucy/main libstdc++6 armhf 4.8.1-5ubuntu1 [279 kB] Get:8 http://ftpmaster.internal/ubuntu/ saucy/main libasan0 armhf 4.8.1-5ubuntu1 [67.4 kB] Get:9 http://ftpmaster.internal/ubuntu/ saucy/main libatomic1 armhf 4.8.1-5ubuntu1 [6768 B] Get:10 http://ftpmaster.internal/ubuntu/ saucy/main cpp-4.8 armhf 4.8.1-5ubuntu1 [5183 kB] Get:11 http://ftpmaster.internal/ubuntu/ saucy/main binutils armhf 2.23.52.20130620-1ubuntu1 [3430 kB] Get:12 http://ftpmaster.internal/ubuntu/ saucy/main libstdc++-4.8-dev armhf 4.8.1-5ubuntu1 [1786 kB] Get:13 http://ftpmaster.internal/ubuntu/ saucy/main g++-4.8 armhf 4.8.1-5ubuntu1 [5571 kB] Get:14 http://ftpmaster.internal/ubuntu/ saucy/main gcc-4.8 armhf 4.8.1-5ubuntu1 [5886 kB] Get:15 http://ftpmaster.internal/ubuntu/ saucy/main libgcc-4.8-dev armhf 4.8.1-5ubuntu1 [301 kB] Get:16 http://ftpmaster.internal/ubuntu/ saucy/main libgcc1 armhf 1:4.8.1-5ubuntu1 [48.9 kB] Get:17 http://ftpmaster.internal/ubuntu/ saucy/main libgmp10 armhf 2:5.1.2+dfsg-2 [214 kB] Get:18 http://ftpmaster.internal/ubuntu/ saucy/main libcomerr2 armhf 1.42.8-1ubuntu1 [60.7 kB] Get:19 http://ftpmaster.internal/ubuntu/ saucy/main libss2 armhf 1.42.8-1ubuntu1 [64.7 kB] Get:20 http://ftpmaster.internal/ubuntu/ saucy/main libsqlite3-0 armhf 3.7.17-1ubuntu1 [316 kB] Get:21 http://ftpmaster.internal/ubuntu/ saucy/main libssl1.0.0 armhf 1.0.1e-2ubuntu1.1 [801 kB] Get:22 http://ftpmaster.internal/ubuntu/ saucy/main libdbus-1-3 armhf 1.6.12-0ubuntu1 [124 kB] Get:23 http://ftpmaster.internal/ubuntu/ saucy/main libroken18-heimdal armhf 1.6~git20120403+dfsg1-3 [37.9 kB] Get:24 http://ftpmaster.internal/ubuntu/ saucy/main libasn1-8-heimdal armhf 1.6~git20120403+dfsg1-3 [168 kB] Get:25 http://ftpmaster.internal/ubuntu/ saucy/main libcurl3-gnutls armhf 7.31.0-1ubuntu1 [159 kB] Get:26 http://ftpmaster.internal/ubuntu/ saucy/main libhcrypto4-heimdal armhf 1.6~git20120403+dfsg1-3 [90.1 kB] Get:27 http://ftpmaster.internal/ubuntu/ saucy/main libheimbase1-heimdal armhf 1.6~git20120403+dfsg1-3 [25.7 kB] Get:28 http://ftpmaster.internal/ubuntu/ saucy/main libwind0-heimdal armhf 1.6~git20120403+dfsg1-3 [76.5 kB] Get:29 http://ftpmaster.internal/ubuntu/ saucy/main libhx509-5-heimdal armhf 1.6~git20120403+dfsg1-3 [97.3 kB] Get:30 http://ftpmaster.internal/ubuntu/ saucy/main libkrb5-26-heimdal armhf 1.6~git20120403+dfsg1-3 [180 kB] Get:31 http://ftpmaster.internal/ubuntu/ saucy/main libheimntlm0-heimdal armhf 1.6~git20120403+dfsg1-3 [14.9 kB] Get:32 http://ftpmaster.internal/ubuntu/ saucy/main libgssapi3-heimdal armhf 1.6~git20120403+dfsg1-3 [86.2 kB] Get:33 http://ftpmaster.internal/ubuntu/ saucy/main libp11-kit0 armhf 0.18.3-2ubuntu1 [51.6 kB] Get:34 http://ftpmaster.internal/ubuntu/ saucy/main libsasl2-2 armhf 2.1.25.dfsg1-13 [46.4 kB] Get:35 http://ftpmaster.internal/ubuntu/ saucy/main libsasl2-modules armhf 2.1.25.dfsg1-13 [52.9 kB] Get:36 http://ftpmaster.internal/ubuntu/ saucy/main lsb-base all 4.1+Debian11ubuntu3 [14.2 kB] Get:37 http://ftpmaster.internal/ubuntu/ saucy/main passwd armhf 1:4.1.5.1-1ubuntu5 [938 kB] Get:38 http://ftpmaster.internal/ubuntu/ saucy/main sensible-utils all 0.0.9 [10.5 kB] Get:39 http://ftpmaster.internal/ubuntu/ saucy/main upstart armhf 1.8-0ubuntu7 [515 kB] Get:40 http://ftpmaster.internal/ubuntu/ saucy/main cpp armhf 4:4.8.1-2ubuntu2 [28.2 kB] Get:41 http://ftpmaster.internal/ubuntu/ saucy/main gcc armhf 4:4.8.1-2ubuntu2 [5148 B] Get:42 http://ftpmaster.internal/ubuntu/ saucy/main g++ armhf 4:4.8.1-2ubuntu2 [1464 B] Get:43 http://ftpmaster.internal/ubuntu/ saucy-proposed/main linux-libc-dev armhf 3.10.0-2.9 [911 kB] Get:44 http://ftpmaster.internal/ubuntu/ saucy/main patch armhf 2.7.1-3 [86.2 kB] Get:45 http://ftpmaster.internal/ubuntu/ saucy/main pkg-create-dbgsym all 0.60 [7822 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 29.5 MB in 8s (3436 kB/s) (Reading database ... 11854 files and directories currently installed.) Preparing to replace e2fslibs:armhf 1.42.5-1.1ubuntu1 (using .../e2fslibs_1.42.8-1ubuntu1_armhf.deb) ... Unpacking replacement e2fslibs:armhf ... Setting up e2fslibs:armhf (1.42.8-1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 11854 files and directories currently installed.) Preparing to replace e2fsprogs 1.42.5-1.1ubuntu1 (using .../e2fsprogs_1.42.8-1ubuntu1_armhf.deb) ... Unpacking replacement e2fsprogs ... Setting up e2fsprogs (1.42.8-1ubuntu1) ... (Reading database ... 11854 files and directories currently installed.) Preparing to replace findutils 4.4.2-5ubuntu1 (using .../findutils_4.4.2-6ubuntu1_armhf.deb) ... Unpacking replacement findutils ... Setting up findutils (4.4.2-6ubuntu1) ... (Reading database ... 11854 files and directories currently installed.) Preparing to replace login 1:4.1.5.1-1ubuntu4 (using .../login_1%3a4.1.5.1-1ubuntu5_armhf.deb) ... Unpacking replacement login ... Setting up login (1:4.1.5.1-1ubuntu5) ... (Reading database ... 11856 files and directories currently installed.) Preparing to replace libgomp1:armhf 4.8.1-3ubuntu1 (using .../libgomp1_4.8.1-5ubuntu1_armhf.deb) ... Unpacking replacement libgomp1:armhf ... Preparing to replace gcc-4.8-base:armhf 4.8.1-3ubuntu1 (using .../gcc-4.8-base_4.8.1-5ubuntu1_armhf.deb) ... Unpacking replacement gcc-4.8-base:armhf ... Setting up gcc-4.8-base:armhf (4.8.1-5ubuntu1) ... (Reading database ... 11856 files and directories currently installed.) Preparing to replace libstdc++6:armhf 4.8.1-3ubuntu1 (using .../libstdc++6_4.8.1-5ubuntu1_armhf.deb) ... Unpacking replacement libstdc++6:armhf ... Setting up libstdc++6:armhf (4.8.1-5ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 11856 files and directories currently installed.) Preparing to replace libasan0:armhf 4.8.1-3ubuntu1 (using .../libasan0_4.8.1-5ubuntu1_armhf.deb) ... Unpacking replacement libasan0:armhf ... Preparing to replace libatomic1:armhf 4.8.1-3ubuntu1 (using .../libatomic1_4.8.1-5ubuntu1_armhf.deb) ... Unpacking replacement libatomic1:armhf ... Preparing to replace cpp-4.8 4.8.1-3ubuntu1 (using .../cpp-4.8_4.8.1-5ubuntu1_armhf.deb) ... Unpacking replacement cpp-4.8 ... Preparing to replace binutils 2.23.52.20130612-1ubuntu1 (using .../binutils_2.23.52.20130620-1ubuntu1_armhf.deb) ... Unpacking replacement binutils ... Preparing to replace libstdc++-4.8-dev:armhf 4.8.1-3ubuntu1 (using .../libstdc++-4.8-dev_4.8.1-5ubuntu1_armhf.deb) ... Unpacking replacement libstdc++-4.8-dev:armhf ... Preparing to replace g++-4.8 4.8.1-3ubuntu1 (using .../g++-4.8_4.8.1-5ubuntu1_armhf.deb) ... Unpacking replacement g++-4.8 ... Preparing to replace gcc-4.8 4.8.1-3ubuntu1 (using .../gcc-4.8_4.8.1-5ubuntu1_armhf.deb) ... Unpacking replacement gcc-4.8 ... Preparing to replace libgcc-4.8-dev:armhf 4.8.1-3ubuntu1 (using .../libgcc-4.8-dev_4.8.1-5ubuntu1_armhf.deb) ... Unpacking replacement libgcc-4.8-dev:armhf ... Preparing to replace libgcc1:armhf 1:4.8.1-3ubuntu1 (using .../libgcc1_1%3a4.8.1-5ubuntu1_armhf.deb) ... Unpacking replacement libgcc1:armhf ... Setting up libgcc1:armhf (1:4.8.1-5ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 11856 files and directories currently installed.) Preparing to replace libgmp10:armhf 2:5.1.2+dfsg-1 (using .../libgmp10_2%3a5.1.2+dfsg-2_armhf.deb) ... Unpacking replacement libgmp10:armhf ... Preparing to replace libcomerr2:armhf 1.42.5-1.1ubuntu1 (using .../libcomerr2_1.42.8-1ubuntu1_armhf.deb) ... Unpacking replacement libcomerr2:armhf ... Setting up libcomerr2:armhf (1.42.8-1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 11856 files and directories currently installed.) Preparing to replace libss2:armhf 1.42.5-1.1ubuntu1 (using .../libss2_1.42.8-1ubuntu1_armhf.deb) ... Unpacking replacement libss2:armhf ... Setting up libss2:armhf (1.42.8-1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 11856 files and directories currently installed.) Preparing to replace libsqlite3-0:armhf 3.7.16.2-1ubuntu2 (using .../libsqlite3-0_3.7.17-1ubuntu1_armhf.deb) ... Unpacking replacement libsqlite3-0:armhf ... Selecting previously unselected package libssl1.0.0:armhf. Unpacking libssl1.0.0:armhf (from .../libssl1.0.0_1.0.1e-2ubuntu1.1_armhf.deb) ... Preparing to replace libdbus-1-3:armhf 1.6.10-0ubuntu2 (using .../libdbus-1-3_1.6.12-0ubuntu1_armhf.deb) ... Unpacking replacement libdbus-1-3:armhf ... Preparing to replace libroken18-heimdal:armhf 1.6~git20120403+dfsg1-2 (using .../libroken18-heimdal_1.6~git20120403+dfsg1-3_armhf.deb) ... Unpacking replacement libroken18-heimdal:armhf ... Preparing to replace libasn1-8-heimdal:armhf 1.6~git20120403+dfsg1-2 (using .../libasn1-8-heimdal_1.6~git20120403+dfsg1-3_armhf.deb) ... Unpacking replacement libasn1-8-heimdal:armhf ... Preparing to replace libcurl3-gnutls:armhf 7.30.0-1ubuntu1 (using .../libcurl3-gnutls_7.31.0-1ubuntu1_armhf.deb) ... Unpacking replacement libcurl3-gnutls:armhf ... Preparing to replace libhcrypto4-heimdal:armhf 1.6~git20120403+dfsg1-2 (using .../libhcrypto4-heimdal_1.6~git20120403+dfsg1-3_armhf.deb) ... Unpacking replacement libhcrypto4-heimdal:armhf ... Preparing to replace libheimbase1-heimdal:armhf 1.6~git20120403+dfsg1-2 (using .../libheimbase1-heimdal_1.6~git20120403+dfsg1-3_armhf.deb) ... Unpacking replacement libheimbase1-heimdal:armhf ... Preparing to replace libwind0-heimdal:armhf 1.6~git20120403+dfsg1-2 (using .../libwind0-heimdal_1.6~git20120403+dfsg1-3_armhf.deb) ... Unpacking replacement libwind0-heimdal:armhf ... Preparing to replace libhx509-5-heimdal:armhf 1.6~git20120403+dfsg1-2 (using .../libhx509-5-heimdal_1.6~git20120403+dfsg1-3_armhf.deb) ... Unpacking replacement libhx509-5-heimdal:armhf ... Preparing to replace libkrb5-26-heimdal:armhf 1.6~git20120403+dfsg1-2 (using .../libkrb5-26-heimdal_1.6~git20120403+dfsg1-3_armhf.deb) ... Unpacking replacement libkrb5-26-heimdal:armhf ... Preparing to replace libheimntlm0-heimdal:armhf 1.6~git20120403+dfsg1-2 (using .../libheimntlm0-heimdal_1.6~git20120403+dfsg1-3_armhf.deb) ... Unpacking replacement libheimntlm0-heimdal:armhf ... Preparing to replace libgssapi3-heimdal:armhf 1.6~git20120403+dfsg1-2 (using .../libgssapi3-heimdal_1.6~git20120403+dfsg1-3_armhf.deb) ... Unpacking replacement libgssapi3-heimdal:armhf ... Preparing to replace libp11-kit0:armhf 0.18.1-1ubuntu1 (using .../libp11-kit0_0.18.3-2ubuntu1_armhf.deb) ... Unpacking replacement libp11-kit0:armhf ... Preparing to replace libsasl2-2:armhf 2.1.25.dfsg1-7 (using .../libsasl2-2_2.1.25.dfsg1-13_armhf.deb) ... Unpacking replacement libsasl2-2:armhf ... Selecting previously unselected package libsasl2-modules:armhf. Unpacking libsasl2-modules:armhf (from .../libsasl2-modules_2.1.25.dfsg1-13_armhf.deb) ... Preparing to replace lsb-base 4.1+Debian11ubuntu2 (using .../lsb-base_4.1+Debian11ubuntu3_all.deb) ... Unpacking replacement lsb-base ... Setting up lsb-base (4.1+Debian11ubuntu3) ... (Reading database ... 11888 files and directories currently installed.) Preparing to replace passwd 1:4.1.5.1-1ubuntu4 (using .../passwd_1%3a4.1.5.1-1ubuntu5_armhf.deb) ... Unpacking replacement passwd ... Setting up passwd (1:4.1.5.1-1ubuntu5) ... (Reading database ... 11890 files and directories currently installed.) Preparing to replace sensible-utils 0.0.7ubuntu1 (using .../sensible-utils_0.0.9_all.deb) ... Unpacking replacement sensible-utils ... Setting up sensible-utils (0.0.9) ... (Reading database ... 11890 files and directories currently installed.) Preparing to replace upstart 1.8-0ubuntu6 (using .../upstart_1.8-0ubuntu7_armhf.deb) ... Unpacking replacement upstart ... Preparing to replace cpp 4:4.8.0-0ubuntu13 (using .../cpp_4%3a4.8.1-2ubuntu2_armhf.deb) ... Unpacking replacement cpp ... Preparing to replace gcc 4:4.8.0-0ubuntu13 (using .../gcc_4%3a4.8.1-2ubuntu2_armhf.deb) ... Removing old gcc doc directory. Unpacking replacement gcc ... Preparing to replace g++ 4:4.8.0-0ubuntu13 (using .../g++_4%3a4.8.1-2ubuntu2_armhf.deb) ... Unpacking replacement g++ ... Preparing to replace linux-libc-dev:armhf 3.9.0-5.12 (using .../linux-libc-dev_3.10.0-2.9_armhf.deb) ... Unpacking replacement linux-libc-dev:armhf ... Preparing to replace patch 2.6.1-3ubuntu2 (using .../patch_2.7.1-3_armhf.deb) ... Unpacking replacement patch ... Preparing to replace pkg-create-dbgsym 0.59 (using .../pkg-create-dbgsym_0.60_all.deb) ... Unpacking replacement pkg-create-dbgsym ... Setting up libgomp1:armhf (4.8.1-5ubuntu1) ... Setting up libasan0:armhf (4.8.1-5ubuntu1) ... Setting up libatomic1:armhf (4.8.1-5ubuntu1) ... Setting up libgmp10:armhf (2:5.1.2+dfsg-2) ... Setting up cpp-4.8 (4.8.1-5ubuntu1) ... Setting up binutils (2.23.52.20130620-1ubuntu1) ... Setting up libgcc-4.8-dev:armhf (4.8.1-5ubuntu1) ... Setting up libstdc++-4.8-dev:armhf (4.8.1-5ubuntu1) ... Setting up gcc-4.8 (4.8.1-5ubuntu1) ... Setting up g++-4.8 (4.8.1-5ubuntu1) ... Setting up libsqlite3-0:armhf (3.7.17-1ubuntu1) ... Setting up libssl1.0.0:armhf (1.0.1e-2ubuntu1.1) ... Setting up libdbus-1-3:armhf (1.6.12-0ubuntu1) ... Setting up libroken18-heimdal:armhf (1.6~git20120403+dfsg1-3) ... Setting up libasn1-8-heimdal:armhf (1.6~git20120403+dfsg1-3) ... Setting up libcurl3-gnutls:armhf (7.31.0-1ubuntu1) ... Setting up libhcrypto4-heimdal:armhf (1.6~git20120403+dfsg1-3) ... Setting up libheimbase1-heimdal:armhf (1.6~git20120403+dfsg1-3) ... Setting up libwind0-heimdal:armhf (1.6~git20120403+dfsg1-3) ... Setting up libhx509-5-heimdal:armhf (1.6~git20120403+dfsg1-3) ... Setting up libkrb5-26-heimdal:armhf (1.6~git20120403+dfsg1-3) ... Setting up libheimntlm0-heimdal:armhf (1.6~git20120403+dfsg1-3) ... Setting up libgssapi3-heimdal:armhf (1.6~git20120403+dfsg1-3) ... Setting up libp11-kit0:armhf (0.18.3-2ubuntu1) ... Setting up libsasl2-modules:armhf (2.1.25.dfsg1-13) ... Setting up libsasl2-2:armhf (2.1.25.dfsg1-13) ... Setting up upstart (1.8-0ubuntu7) ... Setting up cpp (4:4.8.1-2ubuntu2) ... Setting up gcc (4:4.8.1-2ubuntu2) ... Setting up g++ (4:4.8.1-2ubuntu2) ... Setting up linux-libc-dev:armhf (3.10.0-2.9) ... Setting up patch (2.7.1-3) ... Setting up pkg-create-dbgsym (0.60) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'ba51e6eeda3845fb3b7a30f9b258325e0ade997e', 'armhf', 'saucy-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=saucy-proposed', '--purpose=PRIMARY', '--architecture=armhf', '--comp=universe', 'gbrowse_2.54+dfsg-2.dsc'] Initiating build ba51e6eeda3845fb3b7a30f9b258325e0ade997e with 2 jobs across 2 processor cores. Kernel reported to sbuild: 3.2.0-1429-omap4 #38-Ubuntu SMP PREEMPT Thu Mar 28 19:33:32 UTC 2013 armv7l Automatic build of gbrowse_2.54+dfsg-2 on rompo by sbuild/armhf 1.170.5 Build started at 20130702-1805 ****************************************************************************** gbrowse_2.54+dfsg-2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: bioperl (>= 1.6.901), debhelper (>= 9), dh-apache2, libbio-graphics-perl (>= 2.31), libcapture-tiny-perl, libcgi-session-perl (>= 4.02), libgd-gd2-perl (>= 2.07) | libgd-gd2-noxpm-perl (>= 2.07), libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, perl, perl (>= 5.10.0) | libextutils-cbuilder-perl, sqlite3, libdbd-sqlite3-perl, libterm-readkey-perl, libjs-prototype (>= 1.7), libjs-scriptaculous (>= 1.9), libvm-ec2-perl Checking for already installed source dependencies... bioperl: missing debhelper: missing dh-apache2: missing libbio-graphics-perl: missing libcapture-tiny-perl: missing libcgi-session-perl: missing libgd-gd2-perl: missing libgd-gd2-noxpm-perl: missing libio-string-perl: missing libjson-perl: missing libstatistics-descriptive-perl: missing libwww-perl: missing libhttp-daemon-perl: missing perl: already installed (5.14.2-21) perl: already installed (5.14.2-21 >= 5.10.0 is satisfied) sqlite3: missing libdbd-sqlite3-perl: missing libterm-readkey-perl: missing libjs-prototype: missing libjs-scriptaculous: missing libvm-ec2-perl: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install bioperl debhelper dh-apache2 libbio-graphics-perl libcapture-tiny-perl libcgi-session-perl libgd-gd2-perl libio-string-perl libjson-perl libstatistics-descriptive-perl libwww-perl libhttp-daemon-perl sqlite3 libdbd-sqlite3-perl libterm-readkey-perl libjs-prototype libjs-scriptaculous libvm-ec2-perl Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof apparmor-easyprof-ubuntu bsdmainutils ca-certificates comerr-dev dh-apparmor file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian krb5-multidev libapr1 libapr1-dev libaprutil1 libaprutil1-dev libasprintf-dev libasprintf0c2 libbio-perl-perl libcroco3 libdata-stag-perl libdbi-perl libencode-locale-perl libexpat1 libexpat1-dev libffi6 libfile-listing-perl libfontconfig1 libfreetype6 libgd3 libgettextpo-dev libgettextpo0 libglib2.0-0 libgssrpc4 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-turbo8 libjpeg8 libkadm5clnt-mit8 libkadm5srv-mit8 libkdb5-6 libkrb5-dev libldap2-dev liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmysqlclient-dev libmysqlclient18 libnet-http-perl libnet-ssleay-perl libpcre3-dev libpcrecpp0 libpipeline1 libpq-dev libpq5 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libsqlite3-dev libssl-dev libstring-approx-perl libtiff5 libunistring0 liburi-perl libvpx1 libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxpm4 man-db mime-support mysql-common netbase openssl po-debconf python3 python3-minimal python3.3 python3.3-minimal ttf-dejavu-core ucf uuid-dev zlib1g-dev Suggested packages: wamerican wordlist whois vacation doc-base dh-make gettext-doc groff krb5-doc python libmath-random-perl libxml-sax-expatxs-perl libnet-daemon-perl libplrpc-perl libsql-statement-perl libgd-tools krb5-user libdata-dump-perl libcrypt-ssleay-perl postgresql-doc-9.1 sqlite3-doc libauthen-ntlm-perl less www-browser libmail-box-perl python3-doc python3-tk python3.3-doc binfmt-support Recommended packages: bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libapache-dbi-perl libyaml-perl libace-perl liblist-moreutils-perl libxml-twig-perl libset-scalar-perl curl wget lynx-cur libbio-scf-perl libgd-svg-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libgraph-perl libgraphviz-perl libpostscript-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-writer-perl libxml-writer-perl perl-tk libxml-libxslt-perl libmldbm-perl libxml-perl libglib2.0-data shared-mime-info libhtml-format-perl libio-socket-inet6-perl libio-socket-ip-perl javascript-common libjson-xs-perl libssl-doc libhtml-form-perl libmailtools-perl libxml-sax-expat-perl xml-core libmail-sendmail-perl The following NEW packages will be installed: apache2-dev apparmor-easyprof apparmor-easyprof-ubuntu bioperl bsdmainutils ca-certificates comerr-dev debhelper dh-apparmor file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian krb5-multidev libapr1 libapr1-dev libaprutil1 libaprutil1-dev libasprintf-dev libasprintf0c2 libbio-graphics-perl libbio-perl-perl libcapture-tiny-perl libcgi-session-perl libcroco3 libdata-stag-perl libdbd-sqlite3-perl libdbi-perl libencode-locale-perl libexpat1 libexpat1-dev libffi6 libfile-listing-perl libfontconfig1 libfreetype6 libgd-gd2-perl libgd3 libgettextpo-dev libgettextpo0 libglib2.0-0 libgssrpc4 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg-turbo8 libjpeg8 libjs-prototype libjs-scriptaculous libjson-perl libkadm5clnt-mit8 libkadm5srv-mit8 libkdb5-6 libkrb5-dev libldap2-dev liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmysqlclient-dev libmysqlclient18 libnet-http-perl libnet-ssleay-perl libpcre3-dev libpcrecpp0 libpipeline1 libpq-dev libpq5 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libsqlite3-dev libssl-dev libstatistics-descriptive-perl libstring-approx-perl libterm-readkey-perl libtiff5 libunistring0 liburi-perl libvm-ec2-perl libvpx1 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxpm4 man-db mime-support mysql-common netbase openssl po-debconf python3 python3-minimal python3.3 python3.3-minimal sqlite3 ttf-dejavu-core ucf uuid-dev zlib1g-dev 0 upgraded, 120 newly installed, 0 to remove and 0 not upgraded. Need to get 34.2 MB of archives. After this operation, 111 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libffi6 libmagic1 libpython3.3-minimal mime-support libpython3.3-stdlib python3.3-minimal libasprintf0c2 libglib2.0-0 libpipeline1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxml2 groff-base bsdmainutils man-db ucf fonts-dejavu-core ttf-dejavu-core fontconfig-config libcroco3 libfreetype6 libfontconfig1 libjpeg-turbo8 libjpeg8 libjbig0 libtiff5 libvpx1 libxpm4 libgd3 libunistring0 libgettextpo0 libgssrpc4 libkadm5clnt-mit8 libkdb5-6 libkadm5srv-mit8 mysql-common libmysqlclient18 libpcrecpp0 file libpython3-stdlib netbase python3.3 python3-minimal python3 openssl ca-certificates gettext-base libapr1 uuid-dev libapr1-dev libaprutil1 libldap2-dev libexpat1-dev libpcre3-dev libsqlite3-dev libpq5 zlib1g-dev libssl-dev comerr-dev krb5-multidev libkrb5-dev libpq-dev libmysqlclient-dev libaprutil1-dev libasprintf-dev libgettextpo-dev gettext intltool-debian po-debconf apparmor-easyprof-ubuntu apparmor-easyprof dh-apparmor debhelper apache2-dev libio-string-perl libdata-stag-perl libbio-perl-perl bioperl libgd-gd2-perl libbio-graphics-perl libcapture-tiny-perl libcgi-session-perl libdbi-perl libdbd-sqlite3-perl libencode-locale-perl libhttp-date-perl libfile-listing-perl liburi-perl libhtml-tagset-perl libhtml-parser-perl libhtml-tree-perl libio-html-perl liblwp-mediatypes-perl libhttp-message-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-negotiate-perl libnet-ssleay-perl libio-socket-ssl-perl libjs-prototype libjs-scriptaculous libjson-perl libnet-http-perl libwww-robotrules-perl libwww-perl liblwp-protocol-https-perl libstatistics-descriptive-perl libstring-approx-perl libterm-readkey-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-libxml-perl libxml-simple-perl libvm-ec2-perl sqlite3 Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ saucy/main libexpat1 armhf 2.1.0-3 [101 kB] Get:2 http://ftpmaster.internal/ubuntu/ saucy/main libffi6 armhf 3.0.13-2ubuntu1 [16.8 kB] Get:3 http://ftpmaster.internal/ubuntu/ saucy/main libmagic1 armhf 5.11-2ubuntu4 [167 kB] Get:4 http://ftpmaster.internal/ubuntu/ saucy/main libpython3.3-minimal armhf 3.3.2-3ubuntu1 [575 kB] Get:5 http://ftpmaster.internal/ubuntu/ saucy/main mime-support all 3.54ubuntu1 [31.7 kB] Get:6 http://ftpmaster.internal/ubuntu/ saucy/main libpython3.3-stdlib armhf 3.3.2-3ubuntu1 [2638 kB] Get:7 http://ftpmaster.internal/ubuntu/ saucy/main python3.3-minimal armhf 3.3.2-3ubuntu1 [1434 kB] Get:8 http://ftpmaster.internal/ubuntu/ saucy/main libasprintf0c2 armhf 0.18.1.1-10ubuntu3 [6544 B] Get:9 http://ftpmaster.internal/ubuntu/ saucy/main libglib2.0-0 armhf 2.37.3-1ubuntu1 [884 kB] Get:10 http://ftpmaster.internal/ubuntu/ saucy/main libpipeline1 armhf 1.2.4-1 [21.7 kB] Get:11 http://ftpmaster.internal/ubuntu/ saucy/main libxau6 armhf 1:1.0.8-1 [7324 B] Get:12 http://ftpmaster.internal/ubuntu/ saucy/main libxdmcp6 armhf 1:1.1.1-1 [11.2 kB] Get:13 http://ftpmaster.internal/ubuntu/ saucy/main libxcb1 armhf 1.8.1-2ubuntu3 [36.6 kB] Get:14 http://ftpmaster.internal/ubuntu/ saucy/main libx11-data all 2:1.5.0-1ubuntu2 [180 kB] Get:15 http://ftpmaster.internal/ubuntu/ saucy/main libx11-6 armhf 2:1.5.0-1ubuntu2 [689 kB] Get:16 http://ftpmaster.internal/ubuntu/ saucy/main libxml2 armhf 2.9.0+dfsg1-4ubuntu5 [567 kB] Get:17 http://ftpmaster.internal/ubuntu/ saucy/main groff-base armhf 1.22.2-3 [648 kB] Get:18 http://ftpmaster.internal/ubuntu/ saucy/main bsdmainutils armhf 9.0.5ubuntu1 [195 kB] Get:19 http://ftpmaster.internal/ubuntu/ saucy/main man-db armhf 2.6.5-2 [684 kB] Get:20 http://ftpmaster.internal/ubuntu/ saucy/main ucf all 3.0027 [56.6 kB] Get:21 http://ftpmaster.internal/ubuntu/ saucy/main fonts-dejavu-core all 2.33+svn2514-3ubuntu1 [1019 kB] Get:22 http://ftpmaster.internal/ubuntu/ saucy/main ttf-dejavu-core all 2.33+svn2514-3ubuntu1 [2964 B] Get:23 http://ftpmaster.internal/ubuntu/ saucy/main fontconfig-config all 2.10.93-0ubuntu1 [50.5 kB] Get:24 http://ftpmaster.internal/ubuntu/ saucy/main libcroco3 armhf 0.6.8-2 [69.2 kB] Get:25 http://ftpmaster.internal/ubuntu/ saucy/main libfreetype6 armhf 2.4.12-0ubuntu1 [287 kB] Get:26 http://ftpmaster.internal/ubuntu/ saucy/main libfontconfig1 armhf 2.10.93-0ubuntu1 [122 kB] Get:27 http://ftpmaster.internal/ubuntu/ saucy/main libjpeg-turbo8 armhf 1.2.1-0ubuntu2 [85.2 kB] Get:28 http://ftpmaster.internal/ubuntu/ saucy/main libjpeg8 armhf 8c-2ubuntu7 [2118 B] Get:29 http://ftpmaster.internal/ubuntu/ saucy/main libjbig0 armhf 2.0-2ubuntu1 [25.5 kB] Get:30 http://ftpmaster.internal/ubuntu/ saucy/main libtiff5 armhf 4.0.2-4ubuntu3 [151 kB] Get:31 http://ftpmaster.internal/ubuntu/ saucy/main libvpx1 armhf 1.2.0-2 [463 kB] Get:32 http://ftpmaster.internal/ubuntu/ saucy/main libxpm4 armhf 1:3.5.10-1 [32.1 kB] Get:33 http://ftpmaster.internal/ubuntu/ saucy/main libgd3 armhf 2.1.0-1ubuntu1 [123 kB] Get:34 http://ftpmaster.internal/ubuntu/ saucy/main libunistring0 armhf 0.9.3-5build1 [395 kB] Get:35 http://ftpmaster.internal/ubuntu/ saucy/main libgettextpo0 armhf 0.18.1.1-10ubuntu3 [101 kB] Get:36 http://ftpmaster.internal/ubuntu/ saucy/main libgssrpc4 armhf 1.10.1+dfsg-6 [47.8 kB] Get:37 http://ftpmaster.internal/ubuntu/ saucy/main libkadm5clnt-mit8 armhf 1.10.1+dfsg-6 [32.0 kB] Get:38 http://ftpmaster.internal/ubuntu/ saucy/main libkdb5-6 armhf 1.10.1+dfsg-6 [30.4 kB] Get:39 http://ftpmaster.internal/ubuntu/ saucy/main libkadm5srv-mit8 armhf 1.10.1+dfsg-6 [44.0 kB] Get:40 http://ftpmaster.internal/ubuntu/ saucy/main mysql-common all 5.5.31-0ubuntu1 [13.1 kB] Get:41 http://ftpmaster.internal/ubuntu/ saucy/main libmysqlclient18 armhf 5.5.31-0ubuntu1 [864 kB] Get:42 http://ftpmaster.internal/ubuntu/ saucy/main libpcrecpp0 armhf 1:8.31-2 [13.4 kB] Get:43 http://ftpmaster.internal/ubuntu/ saucy/main file armhf 5.11-2ubuntu4 [17.9 kB] Get:44 http://ftpmaster.internal/ubuntu/ saucy/main libpython3-stdlib armhf 3.3.1-0ubuntu1 [8236 B] Get:45 http://ftpmaster.internal/ubuntu/ saucy/main netbase all 5.1 [13.9 kB] Get:46 http://ftpmaster.internal/ubuntu/ saucy/main python3.3 armhf 3.3.2-3ubuntu1 [122 kB] Get:47 http://ftpmaster.internal/ubuntu/ saucy/main python3-minimal armhf 3.3.1-0ubuntu1 [12.4 kB] Get:48 http://ftpmaster.internal/ubuntu/ saucy/main python3 armhf 3.3.1-0ubuntu1 [51.3 kB] Get:49 http://ftpmaster.internal/ubuntu/ saucy/main openssl armhf 1.0.1e-2ubuntu1.1 [522 kB] Get:50 http://ftpmaster.internal/ubuntu/ saucy/main ca-certificates all 20130610 [183 kB] Get:51 http://ftpmaster.internal/ubuntu/ saucy/main gettext-base armhf 0.18.1.1-10ubuntu3 [53.5 kB] Get:52 http://ftpmaster.internal/ubuntu/ saucy/main libapr1 armhf 1.4.6-3ubuntu1 [74.7 kB] Get:53 http://ftpmaster.internal/ubuntu/ saucy/main uuid-dev armhf 2.20.1-5.1ubuntu9 [24.8 kB] Get:54 http://ftpmaster.internal/ubuntu/ saucy/main libapr1-dev armhf 1.4.6-3ubuntu1 [1102 kB] Get:55 http://ftpmaster.internal/ubuntu/ saucy/main libaprutil1 armhf 1.5.2-1 [77.5 kB] Get:56 http://ftpmaster.internal/ubuntu/ saucy/main libldap2-dev armhf 2.4.31-1+nmu2ubuntu1 [453 kB] Get:57 http://ftpmaster.internal/ubuntu/ saucy/main libexpat1-dev armhf 2.1.0-3 [180 kB] Get:58 http://ftpmaster.internal/ubuntu/ saucy/main libpcre3-dev armhf 1:8.31-2 [250 kB] Get:59 http://ftpmaster.internal/ubuntu/ saucy/main libsqlite3-dev armhf 3.7.17-1ubuntu1 [456 kB] Get:60 http://ftpmaster.internal/ubuntu/ saucy/main libpq5 armhf 9.1.9-1ubuntu1 [61.7 kB] Get:61 http://ftpmaster.internal/ubuntu/ saucy/main zlib1g-dev armhf 1:1.2.8.dfsg-1ubuntu1 [176 kB] Get:62 http://ftpmaster.internal/ubuntu/ saucy/main libssl-dev armhf 1.0.1e-2ubuntu1.1 [1287 kB] Get:63 http://ftpmaster.internal/ubuntu/ saucy/main comerr-dev armhf 2.1-1.42.8-1ubuntu1 [43.0 kB] Get:64 http://ftpmaster.internal/ubuntu/ saucy/main krb5-multidev armhf 1.10.1+dfsg-6 [124 kB] Get:65 http://ftpmaster.internal/ubuntu/ saucy/main libkrb5-dev armhf 1.10.1+dfsg-6 [11.0 kB] Get:66 http://ftpmaster.internal/ubuntu/ saucy/main libpq-dev armhf 9.1.9-1ubuntu1 [141 kB] Get:67 http://ftpmaster.internal/ubuntu/ saucy/main libmysqlclient-dev armhf 5.5.31-0ubuntu1 [1289 kB] Get:68 http://ftpmaster.internal/ubuntu/ saucy/main libaprutil1-dev armhf 1.5.2-1 [715 kB] Get:69 http://ftpmaster.internal/ubuntu/ saucy/main libasprintf-dev armhf 0.18.1.1-10ubuntu3 [4446 B] Get:70 http://ftpmaster.internal/ubuntu/ saucy/main libgettextpo-dev armhf 0.18.1.1-10ubuntu3 [119 kB] Get:71 http://ftpmaster.internal/ubuntu/ saucy/main gettext armhf 0.18.1.1-10ubuntu3 [931 kB] Get:72 http://ftpmaster.internal/ubuntu/ saucy/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:73 http://ftpmaster.internal/ubuntu/ saucy/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:74 http://ftpmaster.internal/ubuntu/ saucy/main apparmor-easyprof-ubuntu all 1.0.0 [3492 B] Get:75 http://ftpmaster.internal/ubuntu/ saucy-proposed/main apparmor-easyprof all 2.8.0-0ubuntu19 [21.2 kB] Get:76 http://ftpmaster.internal/ubuntu/ saucy-proposed/main dh-apparmor all 2.8.0-0ubuntu19 [7722 B] Get:77 http://ftpmaster.internal/ubuntu/ saucy/main debhelper all 9.20130630ubuntu1 [629 kB] Get:78 http://ftpmaster.internal/ubuntu/ saucy-proposed/main apache2-dev armhf 2.4.4-6ubuntu2 [166 kB] Get:79 http://ftpmaster.internal/ubuntu/ saucy/main libio-string-perl all 1.08-2 [12.0 kB] Get:80 http://ftpmaster.internal/ubuntu/ saucy/universe libdata-stag-perl all 0.11-2 [505 kB] Get:81 http://ftpmaster.internal/ubuntu/ saucy/universe libbio-perl-perl all 1.6.901-3 [6122 kB] Get:82 http://ftpmaster.internal/ubuntu/ saucy/universe bioperl all 1.6.901-3 [437 kB] Get:83 http://ftpmaster.internal/ubuntu/ saucy/main libgd-gd2-perl armhf 1:2.46-3.1 [180 kB] Get:84 http://ftpmaster.internal/ubuntu/ saucy/universe libbio-graphics-perl all 2.33-1 [677 kB] Get:85 http://ftpmaster.internal/ubuntu/ saucy/universe libcapture-tiny-perl all 0.22-1 [19.8 kB] Get:86 http://ftpmaster.internal/ubuntu/ saucy/universe libcgi-session-perl all 4.48-1 [112 kB] Get:87 http://ftpmaster.internal/ubuntu/ saucy-proposed/main libdbi-perl armhf 1.627-1 [868 kB] Get:88 http://ftpmaster.internal/ubuntu/ saucy/main libdbd-sqlite3-perl armhf 1.37-1 [89.4 kB] Get:89 http://ftpmaster.internal/ubuntu/ saucy/main libencode-locale-perl all 1.03-1 [12.4 kB] Get:90 http://ftpmaster.internal/ubuntu/ saucy/main libhttp-date-perl all 6.02-1 [10.4 kB] Get:91 http://ftpmaster.internal/ubuntu/ saucy/main libfile-listing-perl all 6.04-1 [9774 B] Get:92 http://ftpmaster.internal/ubuntu/ saucy/main liburi-perl all 1.60-1 [89.6 kB] Get:93 http://ftpmaster.internal/ubuntu/ saucy/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:94 http://ftpmaster.internal/ubuntu/ saucy/main libhtml-parser-perl armhf 3.71-1 [96.3 kB] Get:95 http://ftpmaster.internal/ubuntu/ saucy/main libhtml-tree-perl all 5.02-1 [213 kB] Get:96 http://ftpmaster.internal/ubuntu/ saucy/main libio-html-perl all 1.00-1 [15.7 kB] Get:97 http://ftpmaster.internal/ubuntu/ saucy/main liblwp-mediatypes-perl all 6.02-1 [21.7 kB] Get:98 http://ftpmaster.internal/ubuntu/ saucy/main libhttp-message-perl all 6.06-1 [78.7 kB] Get:99 http://ftpmaster.internal/ubuntu/ saucy/main libhttp-cookies-perl all 6.00-2 [23.3 kB] Get:100 http://ftpmaster.internal/ubuntu/ saucy/main libhttp-daemon-perl all 6.01-1 [17.0 kB] Get:101 http://ftpmaster.internal/ubuntu/ saucy/main libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:102 http://ftpmaster.internal/ubuntu/ saucy/main libnet-ssleay-perl armhf 1.48-1 [296 kB] Get:103 http://ftpmaster.internal/ubuntu/ saucy/main libio-socket-ssl-perl all 1.76-2ubuntu1 [51.4 kB] Get:104 http://ftpmaster.internal/ubuntu/ saucy-proposed/universe libjs-prototype all 1.7.1-3 [44.2 kB] Get:105 http://ftpmaster.internal/ubuntu/ saucy/universe libjs-scriptaculous all 1.9.0-2 [107 kB] Get:106 http://ftpmaster.internal/ubuntu/ saucy/main libjson-perl all 2.59-1 [93.5 kB] Get:107 http://ftpmaster.internal/ubuntu/ saucy/main libnet-http-perl all 6.06-1 [24.2 kB] Get:108 http://ftpmaster.internal/ubuntu/ saucy/main libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:109 http://ftpmaster.internal/ubuntu/ saucy/main libwww-perl all 6.05-1 [155 kB] Get:110 http://ftpmaster.internal/ubuntu/ saucy/main liblwp-protocol-https-perl all 6.04-1 [7190 B] Get:111 http://ftpmaster.internal/ubuntu/ saucy/universe libstatistics-descriptive-perl all 3.0605-1 [38.7 kB] Get:112 http://ftpmaster.internal/ubuntu/ saucy/universe libstring-approx-perl armhf 3.27-1 [40.4 kB] Get:113 http://ftpmaster.internal/ubuntu/ saucy/main libterm-readkey-perl armhf 2.30-4build4 [26.3 kB] Get:114 http://ftpmaster.internal/ubuntu/ saucy/main libxml-namespacesupport-perl all 1.09-3 [15.3 kB] Get:115 http://ftpmaster.internal/ubuntu/ saucy/main libxml-sax-base-perl all 1.07-1 [21.5 kB] Get:116 http://ftpmaster.internal/ubuntu/ saucy/main libxml-sax-perl all 0.99+dfsg-2ubuntu1 [64.6 kB] Get:117 http://ftpmaster.internal/ubuntu/ saucy/main libxml-libxml-perl armhf 2.0010+dfsg-1 [366 kB] Get:118 http://ftpmaster.internal/ubuntu/ saucy/main libxml-simple-perl all 2.20-1 [68.3 kB] Get:119 http://ftpmaster.internal/ubuntu/ saucy/universe libvm-ec2-perl all 1.23-1 [559 kB] Get:120 http://ftpmaster.internal/ubuntu/ saucy/main sqlite3 armhf 3.7.17-1ubuntu1 [28.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 34.2 MB in 11s (3072 kB/s) Selecting previously unselected package libexpat1:armhf. (Reading database ... 11895 files and directories currently installed.) Unpacking libexpat1:armhf (from .../libexpat1_2.1.0-3_armhf.deb) ... Selecting previously unselected package libffi6:armhf. Unpacking libffi6:armhf (from .../libffi6_3.0.13-2ubuntu1_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-2ubuntu4_armhf.deb) ... Selecting previously unselected package libpython3.3-minimal:armhf. Unpacking libpython3.3-minimal:armhf (from .../libpython3.3-minimal_3.3.2-3ubuntu1_armhf.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.54ubuntu1_all.deb) ... Selecting previously unselected package libpython3.3-stdlib:armhf. Unpacking libpython3.3-stdlib:armhf (from .../libpython3.3-stdlib_3.3.2-3ubuntu1_armhf.deb) ... Selecting previously unselected package python3.3-minimal. Unpacking python3.3-minimal (from .../python3.3-minimal_3.3.2-3ubuntu1_armhf.deb) ... 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Selecting previously unselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.10.93-0ubuntu1_all.deb) ... Selecting previously unselected package libcroco3:armhf. Unpacking libcroco3:armhf (from .../libcroco3_0.6.8-2_armhf.deb) ... Selecting previously unselected package libfreetype6:armhf. Unpacking libfreetype6:armhf (from .../libfreetype6_2.4.12-0ubuntu1_armhf.deb) ... Selecting previously unselected package libfontconfig1:armhf. Unpacking libfontconfig1:armhf (from .../libfontconfig1_2.10.93-0ubuntu1_armhf.deb) ... Selecting previously unselected package libjpeg-turbo8:armhf. Unpacking libjpeg-turbo8:armhf (from .../libjpeg-turbo8_1.2.1-0ubuntu2_armhf.deb) ... Selecting previously unselected package libjpeg8:armhf. Unpacking libjpeg8:armhf (from .../libjpeg8_8c-2ubuntu7_armhf.deb) ... Selecting previously unselected package libjbig0:armhf. Unpacking libjbig0:armhf (from .../libjbig0_2.0-2ubuntu1_armhf.deb) ... 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Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython3.3-stdlib:armhf (3.3.2-3ubuntu1) ... Setting up python3.3-minimal (3.3.2-3ubuntu1) ... Setting up libasprintf0c2:armhf (0.18.1.1-10ubuntu3) ... Setting up libglib2.0-0:armhf (2.37.3-1ubuntu1) ... No schema files found: doing nothing. Setting up libpipeline1:armhf (1.2.4-1) ... Setting up libxau6:armhf (1:1.0.8-1) ... Setting up libxdmcp6:armhf (1:1.1.1-1) ... Setting up libxcb1:armhf (1.8.1-2ubuntu3) ... Setting up libx11-data (2:1.5.0-1ubuntu2) ... Setting up libx11-6:armhf (2:1.5.0-1ubuntu2) ... Setting up libxml2:armhf (2.9.0+dfsg1-4ubuntu5) ... Setting up groff-base (1.22.2-3) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up ucf (3.0027) ... Setting up fonts-dejavu-core (2.33+svn2514-3ubuntu1) ... Setting up ttf-dejavu-core (2.33+svn2514-3ubuntu1) ... Setting up fontconfig-config (2.10.93-0ubuntu1) ... Setting up libcroco3:armhf (0.6.8-2) ... Setting up libfreetype6:armhf (2.4.12-0ubuntu1) ... Setting up libfontconfig1:armhf (2.10.93-0ubuntu1) ... Setting up libjpeg-turbo8:armhf (1.2.1-0ubuntu2) ... Setting up libjpeg8:armhf (8c-2ubuntu7) ... Setting up libjbig0:armhf (2.0-2ubuntu1) ... Setting up libtiff5:armhf (4.0.2-4ubuntu3) ... Setting up libvpx1:armhf (1.2.0-2) ... Setting up libxpm4:armhf (1:3.5.10-1) ... Setting up libgd3:armhf (2.1.0-1ubuntu1) ... Setting up libunistring0:armhf (0.9.3-5build1) ... Setting up libgettextpo0:armhf (0.18.1.1-10ubuntu3) ... Setting up libgssrpc4:armhf (1.10.1+dfsg-6) ... Setting up libkadm5clnt-mit8:armhf (1.10.1+dfsg-6) ... Setting up libkdb5-6:armhf (1.10.1+dfsg-6) ... Setting up libkadm5srv-mit8:armhf (1.10.1+dfsg-6) ... Setting up mysql-common (5.5.31-0ubuntu1) ... Setting up libmysqlclient18:armhf (5.5.31-0ubuntu1) ... Setting up libpcrecpp0:armhf (1:8.31-2) ... Setting up file (5.11-2ubuntu4) ... Setting up libpython3-stdlib:armhf (3.3.1-0ubuntu1) ... Setting up netbase (5.1) ... Setting up python3.3 (3.3.2-3ubuntu1) ... Setting up python3-minimal (3.3.1-0ubuntu1) ... Setting up python3 (3.3.1-0ubuntu1) ... running python rtupdate hooks for python3.3... running python post-rtupdate hooks for python3.3... Setting up openssl (1.0.1e-2ubuntu1.1) ... Setting up ca-certificates (20130610) ... Setting up gettext-base (0.18.1.1-10ubuntu3) ... Setting up libapr1 (1.4.6-3ubuntu1) ... Setting up uuid-dev (2.20.1-5.1ubuntu9) ... Setting up libapr1-dev (1.4.6-3ubuntu1) ... Setting up libaprutil1 (1.5.2-1) ... Setting up libldap2-dev:armhf (2.4.31-1+nmu2ubuntu1) ... Setting up libexpat1-dev:armhf (2.1.0-3) ... Setting up libpcre3-dev:armhf (1:8.31-2) ... Setting up libsqlite3-dev:armhf (3.7.17-1ubuntu1) ... Setting up libpq5 (9.1.9-1ubuntu1) ... Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-1ubuntu1) ... Setting up libssl-dev (1.0.1e-2ubuntu1.1) ... Setting up comerr-dev (2.1-1.42.8-1ubuntu1) ... Setting up krb5-multidev (1.10.1+dfsg-6) ... Setting up libkrb5-dev (1.10.1+dfsg-6) ... Setting up libpq-dev (9.1.9-1ubuntu1) ... Setting up libmysqlclient-dev (5.5.31-0ubuntu1) ... Setting up libaprutil1-dev (1.5.2-1) ... Setting up libasprintf-dev:armhf (0.18.1.1-10ubuntu3) ... Setting up libgettextpo-dev:armhf (0.18.1.1-10ubuntu3) ... Setting up gettext (0.18.1.1-10ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up apparmor-easyprof-ubuntu (1.0.0) ... Setting up apparmor-easyprof (2.8.0-0ubuntu19) ... Setting up dh-apparmor (2.8.0-0ubuntu19) ... Setting up debhelper (9.20130630ubuntu1) ... Setting up apache2-dev (2.4.4-6ubuntu2) ... Setting up libio-string-perl (1.08-2) ... Setting up libdata-stag-perl (0.11-2) ... Setting up libbio-perl-perl (1.6.901-3) ... Setting up bioperl (1.6.901-3) ... Setting up libgd-gd2-perl (1:2.46-3.1) ... Setting up libbio-graphics-perl (2.33-1) ... Setting up libcapture-tiny-perl (0.22-1) ... Setting up libcgi-session-perl (4.48-1) ... Setting up libdbi-perl (1.627-1) ... Setting up libdbd-sqlite3-perl (1.37-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up liburi-perl (1.60-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.71-1) ... Setting up libhtml-tree-perl (5.02-1) ... Setting up libio-html-perl (1.00-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhttp-cookies-perl (6.00-2) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.48-1) ... Setting up libio-socket-ssl-perl (1.76-2ubuntu1) ... Setting up libjs-prototype (1.7.1-3) ... Setting up libjs-scriptaculous (1.9.0-2) ... Setting up libjson-perl (2.59-1) ... Setting up libnet-http-perl (6.06-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libstatistics-descriptive-perl (3.0605-1) ... Setting up libstring-approx-perl (3.27-1) ... Setting up libterm-readkey-perl (2.30-4build4) ... Setting up libxml-namespacesupport-perl (1.09-3) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up libxml-sax-perl (0.99+dfsg-2ubuntu1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0010+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-simple-perl (2.20-1) ... Setting up sqlite3 (3.7.17-1ubuntu1) ... Setting up libwww-perl (6.05-1) ... Setting up liblwp-protocol-https-perl (6.04-1) ... Setting up libvm-ec2-perl (1.23-1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for ca-certificates ... Updating certificates in /etc/ssl/certs... 157 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.17-0ubuntu5 make_3.81-8.2ubuntu3 dpkg-dev_1.16.10ubuntu2 gcc-4.8_4.8.1-5ubuntu1 g++-4.8_4.8.1-5ubuntu1 binutils_2.23.52.20130620-1ubuntu1 libstdc++-4.8-dev_4.8.1-5ubuntu1 libstdc++6_4.8.1-5ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Fri May 31 12:24:50 2013 UTC using RSA key ID 326D8438 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./gbrowse_2.54+dfsg-2.dsc dpkg-source: info: extracting gbrowse in gbrowse-2.54+dfsg dpkg-source: info: unpacking gbrowse_2.54+dfsg.orig.tar.bz2 dpkg-source: info: unpacking gbrowse_2.54+dfsg-2.debian.tar.gz dpkg-source: info: applying debian-packaging-patch dpkg-source: info: applying gbrowse-slave-fix_defaults_path dpkg-source: info: applying manpages.patch dpkg-source: info: applying fix_pop_url dpkg-source: info: applying skipRenderFarmTest_UpstreamBug12 dpkg-source: info: applying skip_check_installed_test.patch dpkg-buildpackage: source package gbrowse dpkg-buildpackage: source version 2.54+dfsg-2 dpkg-source --before-build gbrowse-2.54+dfsg dpkg-buildpackage: host architecture armhf /usr/bin/fakeroot debian/rules clean dh clean --with apache2 dh_testdir dh_auto_clean dh_clean debian/rules build-arch dh build-arch --with apache2 dh_testdir -a debian/rules override_dh_auto_configure make[1]: Entering directory `/build/buildd/gbrowse-2.54+dfsg' dh_auto_configure -- --conf=/etc/gbrowse --htdocs=/usr/share/gbrowse/htdocs --tmp=/var/cache/gbrowse --databases=/var/lib/gbrowse/databases --cgibin=/usr/lib/cgi-bin/gbrowse --www-user=www-data --registration_done=1 --persistent=/var/lib/gbrowse Checking prerequisites... recommends: * Bio::DB::BigFile is not installed * Bio::DB::Sam is not installed * Bio::Das is not installed * Crypt::SSLeay is not installed * DBD::Pg is not installed * DBD::mysql is not installed * DB_File::Lock is not installed * FCGI is not installed * File::NFSLock is not installed * GD::SVG is not installed * Net::OpenID::Consumer is not installed * Net::SMTP::SSL is not installed * Parse::Apache::ServerStatus is not installed * Template is not installed * Do not worry if some "recommended" prerequisites are missing. You can install * * them later if you need the features they provide. Do not proceed with the * * install if any of "REQUIRED" prerequisites are missing. * * * * The optional Safe::World module does not currently run on Perl 5.10 or * * higher, and so cannot be installed. * ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions of the modules indicated above before proceeding with this installation Run 'Build installdeps' to install missing prerequisites. **** WARNING ***************************************************************************************** If you are upgrading from an earlier version of GBrowse and wish to use named user accounts, please set "user_accounts" to 1 in /etc/gbrowse2/GBrowse.conf and run bin/gbrowse_metadb_config.pl to create/update your user account database. See /etc/gbrowse2/GBrowse.conf.new for suggested settings. ****************************************************************************************************** Now run: ./Build test ./Build demo (optional) ./Build install (as superuser/administrator) -or- ./Build install_slave (optional, for slave installations) Other useful targets: ./Build register (to register your copy of GBrowse) ./Build reconfig (to reconfigure install locations) ./Build demostop (to stop the demo) Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'GBrowse' version '2.54' make[1]: Leaving directory `/build/buildd/gbrowse-2.54+dfsg' dh_auto_build -a NOTE: Run ./Build reconfig to change existing configuration. Building GBrowse cc -I/build/buildd/gbrowse-2.54+dfsg/libalign -I/usr/lib/perl/5.14/CORE -DXS_VERSION="2.54" -DVERSION="2.54" -fPIC -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fstack-protector -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -g -o lib/Bio/Graphics/Browser2/CAlign.o lib/Bio/Graphics/Browser2/CAlign.c ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/Graphics/Browser2/CAlign/CAlign.bs') cc -shared -L/usr/local/lib -fstack-protector -o blib/arch/auto/Bio/Graphics/Browser2/CAlign/CAlign.so lib/Bio/Graphics/Browser2/CAlign.o Performing variable substitutions in blib/conf/detail_select_menu.conf Performing variable substitutions in blib/conf/enzymes.txt Performing variable substitutions in blib/conf/GBrowse.conf Performing variable substitutions in blib/conf/log4perl.conf Performing variable substitutions in blib/conf/MobyServices/moby.conf Performing variable substitutions in blib/conf/pop_demo.conf Performing variable substitutions in blib/conf/renderfarm.conf Performing variable substitutions in blib/conf/slave_preload.conf Performing variable substitutions in blib/conf/submitter_plugin.conf Performing variable substitutions in blib/conf/synteny/rice_synteny.conf Performing variable substitutions in blib/conf/synteny/wild_rice_synteny.conf Performing variable substitutions in blib/conf/themes/solid_gray_colors Performing variable substitutions in blib/conf/themes/transparent_colors Performing variable substitutions in blib/conf/themes/warm_colors Performing variable substitutions in blib/conf/volvox.conf Performing variable substitutions in blib/conf/yeast_chr1+2.conf Performing variable substitutions in blib/conf/yeast_renderfarm.conf Performing variable substitutions in blib/conf/yeast_simple.conf Performing variable substitutions in blib/htdocs/annotation_help.html Performing variable substitutions in blib/htdocs/cloud_index.html Performing variable substitutions in blib/htdocs/example_scripts/index.html Performing variable substitutions in blib/htdocs/example_scripts/README Performing variable substitutions in blib/htdocs/gbrowse_karyotype_help.html Performing variable substitutions in blib/htdocs/gbrowse_syn_help.html Performing variable substitutions in blib/htdocs/general_help.html Performing variable substitutions in blib/htdocs/index.html Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_core.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_extra.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/HEADER.html Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final_withPhylo.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_halfway.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_Phylo.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_quarter.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_refactored.conf Performing variable substitutions in blib/htdocs/tutorial/data_files/HEADER.html Performing variable substitutions in blib/htdocs/tutorial/tutorial.html Performing variable substitutions in blib/htdocs/tutorial/tutorial.phyTreeEdit.html Performing variable substitutions in blib/htdocs/vbox_index.html Use of uninitialized value in pattern match (m//) at /build/buildd/gbrowse-2.54+dfsg/install_util/GBrowseInstall.pm line 728. dh_auto_test -a NOTE: Run ./Build reconfig to change existing configuration. Use of uninitialized value in pattern match (m//) at /build/buildd/gbrowse-2.54+dfsg/install_util/GBrowseInstall.pm line 728. t/00.compile.t ............ ok t/01.yeast.t .............. ok t/02.rearchitecture.t ..... ok t/03.render.t ............. skipped: (no reason given) Sometimes this test gets 'stuck'. If this happens, kill the test and Build test again. t/04.remoteserver.t ....... skipped: (no reason given) t/05.deferredrendering.t .. ok t/06.featuresearch.t ...... skipped: (no reason given) t/07.karyotype.t .......... ok t/08.calign.t ............. ok All tests successful. Files=9, Tests=225, 76 wallclock secs ( 0.35 usr 0.05 sys + 57.76 cusr 5.41 csys = 63.57 CPU) Result: PASS /usr/bin/fakeroot debian/rules binary-arch dh binary-arch --with apache2 dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install make[1]: Entering directory `/build/buildd/gbrowse-2.54+dfsg' ./Build --install_base=debian/gbrowse debianinstall NOTE: Run ./Build reconfig to change existing configuration. Use of uninitialized value in pattern match (m//) at /build/buildd/gbrowse-2.54+dfsg/install_util/GBrowseInstall.pm line 728. Building GBrowse Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/auto/Bio/Graphics/Browser2/CAlign/CAlign.bs Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/auto/Bio/Graphics/Browser2/CAlign/CAlign.so Installing debian/gbrowse/man/man1/bed2gff3.pl.1p Installing debian/gbrowse/man/man1/gtf2gff3.pl.1p Installing debian/gbrowse/man/man1/gbrowse_clean.pl.1p Installing debian/gbrowse/man/man1/make_das_conf.pl.1p Installing debian/gbrowse/man/man1/ucsc_genes2gff.pl.1p Installing debian/gbrowse/man/man1/load_genbank.pl.1p Installing debian/gbrowse/man/man1/gbrowse_grow_cloud_vol.pl.1p Installing debian/gbrowse/man/man1/wiggle2gff3.pl.1p Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_syn Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_gmap Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_details Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_login Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_key_img Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbgff Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/das Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_img Installing debian/gbrowse/etc/gbrowse/log4perl.conf Installing debian/gbrowse/etc/gbrowse/detail_select_menu.conf Installing debian/gbrowse/etc/gbrowse/GBrowse.conf Installing debian/gbrowse/etc/gbrowse/yeast_renderfarm.conf Installing debian/gbrowse/etc/gbrowse/renderfarm.conf Installing debian/gbrowse/etc/gbrowse/submitter_plugin.conf Installing debian/gbrowse/etc/gbrowse/slave_preload.conf Installing debian/gbrowse/etc/gbrowse/pop_demo.conf Installing debian/gbrowse/etc/gbrowse/volvox.conf Installing debian/gbrowse/etc/gbrowse/enzymes.txt Installing debian/gbrowse/etc/gbrowse/yeast_chr1+2.conf Installing debian/gbrowse/etc/gbrowse/yeast_simple.conf Installing debian/gbrowse/etc/gbrowse/plugins/ProteinDumper.pm Installing debian/gbrowse/etc/gbrowse/plugins/Aligner.pm Installing debian/gbrowse/etc/gbrowse/plugins/SinWave.pm Installing debian/gbrowse/etc/gbrowse/plugins/PrimerDesigner.pm Installing debian/gbrowse/etc/gbrowse/plugins/SequenceDumper.pm Installing debian/gbrowse/etc/gbrowse/plugins/RestrictionAnnotator.pm Installing debian/gbrowse/etc/gbrowse/plugins/TestFinder.pm Installing debian/gbrowse/etc/gbrowse/plugins/Submitter.pm Installing debian/gbrowse/etc/gbrowse/plugins/GeneFinder.pm Installing debian/gbrowse/etc/gbrowse/plugins/FilterTest.pm Installing debian/gbrowse/etc/gbrowse/plugins/CreateBlastDB.pm Installing debian/gbrowse/etc/gbrowse/plugins/AttributeHiliter.pm Installing debian/gbrowse/etc/gbrowse/plugins/FBTableDumper.pm Installing debian/gbrowse/etc/gbrowse/plugins/TrackFinder.pm Installing debian/gbrowse/etc/gbrowse/plugins/AlignTwoSequences.pm Installing debian/gbrowse/etc/gbrowse/plugins/SimpleTrackFinder.pm Installing debian/gbrowse/etc/gbrowse/plugins/TestAuthenticator.pm Installing debian/gbrowse/etc/gbrowse/plugins/BatchDumper.pm Installing debian/gbrowse/etc/gbrowse/plugins/OligoFinder.pm Installing debian/gbrowse/etc/gbrowse/plugins/PamAuthenticate.pm Installing debian/gbrowse/etc/gbrowse/plugins/Spectrogram.pm Installing debian/gbrowse/etc/gbrowse/plugins/SourceTrackFinder.pm Installing debian/gbrowse/etc/gbrowse/plugins/Blat.pm Installing debian/gbrowse/etc/gbrowse/plugins/LDAPAuthenticate.pm Installing debian/gbrowse/etc/gbrowse/plugins/CMapDumper.pm Installing debian/gbrowse/etc/gbrowse/plugins/FastaDumper.pm Installing debian/gbrowse/etc/gbrowse/plugins/test.pm Installing debian/gbrowse/etc/gbrowse/plugins/TrackDumper.pm Installing debian/gbrowse/etc/gbrowse/plugins/RandomGene.pm Installing debian/gbrowse/etc/gbrowse/themes/transparent_colors Installing debian/gbrowse/etc/gbrowse/themes/solid_gray_colors Installing debian/gbrowse/etc/gbrowse/themes/warm_colors Installing debian/gbrowse/etc/gbrowse/MobyServices/text_xml_renderer.pm Installing debian/gbrowse/etc/gbrowse/MobyServices/GbrowseServices.pm Installing debian/gbrowse/etc/gbrowse/MobyServices/text_plain_renderer.pm Installing debian/gbrowse/etc/gbrowse/MobyServices/b64_encoded_jpeg_renderer.pm Installing debian/gbrowse/etc/gbrowse/MobyServices/GbrowseServices.PMS Installing debian/gbrowse/etc/gbrowse/MobyServices/moby.conf Installing debian/gbrowse/etc/gbrowse/MobyServices/b64_encoded_gif_renderer.pm Installing debian/gbrowse/etc/gbrowse/MobyServices/text_formatted_renderer.pm Installing debian/gbrowse/etc/gbrowse/MobyServices/text_html_renderer.pm Installing debian/gbrowse/etc/gbrowse/synteny/rice_synteny.conf Installing debian/gbrowse/etc/gbrowse/synteny/oryza.synconf.disabled Installing debian/gbrowse/etc/gbrowse/synteny/wild_rice_synteny.conf Installing debian/gbrowse/etc/gbrowse/languages/es.pm Installing debian/gbrowse/etc/gbrowse/languages/fr.pm Installing debian/gbrowse/etc/gbrowse/languages/ru.pm Installing debian/gbrowse/etc/gbrowse/languages/ko.pm Installing debian/gbrowse/etc/gbrowse/languages/pl.pm Installing debian/gbrowse/etc/gbrowse/languages/ja.pm Installing debian/gbrowse/etc/gbrowse/languages/zh_cn.pm Installing debian/gbrowse/etc/gbrowse/languages/zh.pm Installing debian/gbrowse/etc/gbrowse/languages/en.pm Installing debian/gbrowse/etc/gbrowse/languages/is.pm Installing debian/gbrowse/etc/gbrowse/languages/it.pm Installing debian/gbrowse/etc/gbrowse/languages/nl.pm Installing debian/gbrowse/etc/gbrowse/languages/de.pm Installing debian/gbrowse/etc/gbrowse/languages/POSIX.pm Installing debian/gbrowse/var/lib/gbrowse/databases/gbrowse_syn/wild_rice/wild_rice.gff3 Installing debian/gbrowse/var/lib/gbrowse/databases/gbrowse_syn/alignments/rice.aln.gz Installing debian/gbrowse/var/lib/gbrowse/databases/gbrowse_syn/rice/rice.gff3 Installing debian/gbrowse/var/lib/gbrowse/databases/pop_demo/pop_demo.gff3 Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_scaffolds/chromosomes.gff3 Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_scaffolds/chr1.fa Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_scaffolds/chr2.fa Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_chr1+2/yeast_chr1+2.gff3 Installing debian/gbrowse/var/lib/gbrowse/databases/admin_uploads/README Installing debian/gbrowse/var/lib/gbrowse/databases/ideograms/mouse_cytobands.gff Installing debian/gbrowse/var/lib/gbrowse/databases/ideograms/rat_cytobands.gff Installing debian/gbrowse/var/lib/gbrowse/databases/ideograms/human_cytobands.gff Installing debian/gbrowse/usr/share/gbrowse/htdocs/index.html Installing debian/gbrowse/usr/share/gbrowse/htdocs/annotation_help.html Installing debian/gbrowse/usr/share/gbrowse/htdocs/gbrowse_syn_help.html Installing debian/gbrowse/usr/share/gbrowse/htdocs/gbrowse_karyotype_help.html Installing 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debian/gbrowse/usr/share/gbrowse/htdocs/js/autocomplete.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/unittest.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/balloon.config.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/ajax_upload.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/builder.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/buttons.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/box.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/track.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/controls.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/balloon.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/rubber.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/scrollfix.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/x_cook.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/slider.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/login.js Installing 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Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_transparent.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/menulink.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/dropdown.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/helper.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/default_theme.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-left-open.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-down-open.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-down.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-up-on.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-up.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/pattern2.png Installing 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debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/CGI/Toggle.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/GBrowse/ConfigData.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/Tagger.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/Tagger/Tag.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/Tagger/mysql.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/SeqFeature/Store/BedLoader.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/SeqFeature/Store/Alias.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/GFF/Aggregator/reftranscript.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/GFF/Aggregator/waba_alignment.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/GFF/Aggregator/wormbase_gene.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/GFF/Aggregator/match_gap.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/GBrowseFeature.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Karyotype.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/CachedTrack.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Region.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataSource.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/UserDB.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/SendMail.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/UserTracks.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/ExternalData.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Shellwords.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/PluginSet.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Session.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/I18n.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/SubtrackTable.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/RegionSearch.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/CAlign.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Action.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Plugin.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Realign.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Markup.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Util.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/GFFhelper.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/RemoteSet.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/OptionPick.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/RenderPanels.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/PadAlignment.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataBase.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/TrackDumper.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/bigwig.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/bam.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/bed.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/generic.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/sam.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/gff.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/gff3.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/wiggle.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/wig2bigwig.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/featurefile.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/TrackDumper/RichSeqMaker.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/SnapshotManager.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/HTML.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/Slave.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/Login.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/TrackConfig.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/HTML/TrackListing.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/HTML/TrackListing/Categories.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/Slave/Status.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/UserTracks/Database.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/UserTracks/Filesystem.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Plugin/AuthPlugin.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/DB/SyntenyIO.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/DB/SyntenyBlock.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser/Synteny.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser/I18n.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser/PageSettings.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser/Util.pm Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::match_gap.3pm Installing debian/gbrowse/man/man3/Bio::DB::Tagger.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Region.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Render.3pm Installing debian/gbrowse/man/man3/Bio::DB::Tagger::Tag.3pm Installing debian/gbrowse/man/man3/Bio::DB::SeqFeature::Store::Alias.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::CAlign.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::OptionPick.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RemoteSet.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::PadAlignment.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RegionSearch.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Util.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataSource.3pm Installing debian/gbrowse/man/man3/Legacy::Graphics::Browser.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::PluginSet.3pm Installing debian/gbrowse/man/man3/CGI::Toggle.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Plugin.3pm Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::reftranscript.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Markup.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RenderPanels.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Realign.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::GFFhelper.3pm Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::waba_alignment.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::AuthorizedFeatureFile.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Plugin::AuthPlugin.3pm Installing debian/gbrowse/man/man3/GBrowse::ConfigData.3pm Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::wormbase_gene.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataBase.3pm Installing debian/gbrowse/bin/gbrowse_create_account.pl Installing debian/gbrowse/bin/gbrowse_configure_slaves.pl Installing debian/gbrowse/bin/gbrowse_syn_load_alignment_database.pl Installing debian/gbrowse/bin/gbrowse_grow_cloud_vol.pl Installing debian/gbrowse/bin/gbrowse_launch_aws_slaves.pl Installing debian/gbrowse/bin/gbrowse_metadb_config.pl Installing debian/gbrowse/bin/load_genbank.pl Installing debian/gbrowse/bin/gtf2gff3.pl Installing debian/gbrowse/bin/wiggle2gff3.pl Installing debian/gbrowse/bin/gbrowse_set_admin_passwd.pl Installing debian/gbrowse/bin/ucsc_genes2gff.pl Installing debian/gbrowse/bin/scan_gbrowse.pl Installing debian/gbrowse/bin/gbrowse_slave Installing debian/gbrowse/bin/gbrowse_clean.pl Installing debian/gbrowse/bin/gbrowse_change_passwd.pl Installing debian/gbrowse/bin/gbrowse_syn_load_alignments_msa.pl Installing debian/gbrowse/bin/gbrowse_import_ucsc_db.pl Installing debian/gbrowse/bin/make_das_conf.pl Installing debian/gbrowse/bin/bed2gff3.pl #./Build apache_conf > debian/gbrowse/etc/gbrowse/gbrowse_apache2.conf perl Build.PL --conf=/etc/gbrowse --htdocs=/usr/share/gbrowse/htdocs --tmp=/var/cache/gbrowse --databases=/var/lib/gbrowse/databases --cgibin=/usr/lib/cgi-bin/gbrowse --www-user=www-data --registration_done=1 --persistent=/var/lib/gbrowse --installetc=y Checking prerequisites... recommends: * Bio::DB::BigFile is not installed * Bio::DB::Sam is not installed * Bio::Das is not installed * Crypt::SSLeay is not installed * DBD::Pg is not installed * DBD::mysql is not installed * DB_File::Lock is not installed * FCGI is not installed * File::NFSLock is not installed * GD::SVG is not installed * Net::OpenID::Consumer is not installed * Net::SMTP::SSL is not installed * Parse::Apache::ServerStatus is not installed * Template is not installed * Do not worry if some "recommended" prerequisites are missing. You can install * * them later if you need the features they provide. Do not proceed with the * * install if any of "REQUIRED" prerequisites are missing. * * * * The optional Safe::World module does not currently run on Perl 5.10 or * * higher, and so cannot be installed. * ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions of the modules indicated above before proceeding with this installation Run 'Build installdeps' to install missing prerequisites. **** WARNING ***************************************************************************************** If you are upgrading from an earlier version of GBrowse and wish to use named user accounts, please set "user_accounts" to 1 in /etc/gbrowse2/GBrowse.conf and run bin/gbrowse_metadb_config.pl to create/update your user account database. See /etc/gbrowse2/GBrowse.conf.new for suggested settings. ****************************************************************************************************** NOTE: Run ./Build reconfig to change existing configuration. Now run: ./Build test ./Build demo (optional) ./Build install (as superuser/administrator) -or- ./Build install_slave (optional, for slave installations) Other useful targets: ./Build register (to register your copy of GBrowse) ./Build reconfig (to reconfigure install locations) ./Build demostop (to stop the demo) Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'GBrowse' version '2.54' ./Build --install_base=debian/gbrowse install_slave NOTE: Run ./Build reconfig to change existing configuration. Performing variable substitutions in blib/conf/detail_select_menu.conf Performing variable substitutions in blib/conf/enzymes.txt Performing variable substitutions in blib/conf/GBrowse.conf Performing variable substitutions in blib/conf/log4perl.conf Performing variable substitutions in blib/conf/MobyServices/moby.conf Performing variable substitutions in blib/conf/pop_demo.conf Performing variable substitutions in blib/conf/renderfarm.conf Performing variable substitutions in blib/conf/slave_preload.conf Performing variable substitutions in blib/conf/submitter_plugin.conf Performing variable substitutions in blib/conf/synteny/rice_synteny.conf Performing variable substitutions in blib/conf/synteny/wild_rice_synteny.conf Performing variable substitutions in blib/conf/themes/solid_gray_colors Performing variable substitutions in blib/conf/themes/transparent_colors Performing variable substitutions in blib/conf/themes/warm_colors Performing variable substitutions in blib/conf/volvox.conf Performing variable substitutions in blib/conf/yeast_chr1+2.conf Performing variable substitutions in blib/conf/yeast_renderfarm.conf Performing variable substitutions in blib/conf/yeast_simple.conf Performing variable substitutions in blib/htdocs/annotation_help.html Performing variable substitutions in blib/htdocs/cloud_index.html Performing variable substitutions in blib/htdocs/example_scripts/index.html Performing variable substitutions in blib/htdocs/example_scripts/README Performing variable substitutions in blib/htdocs/gbrowse_karyotype_help.html Performing variable substitutions in blib/htdocs/gbrowse_syn_help.html Performing variable substitutions in blib/htdocs/general_help.html Performing variable substitutions in blib/htdocs/index.html Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_core.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_extra.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/HEADER.html Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final_withPhylo.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_halfway.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_Phylo.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_quarter.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_refactored.conf Performing variable substitutions in blib/htdocs/tutorial/data_files/HEADER.html Performing variable substitutions in blib/htdocs/tutorial/tutorial.html Performing variable substitutions in blib/htdocs/tutorial/tutorial.phyTreeEdit.html Performing variable substitutions in blib/htdocs/vbox_index.html Performing variable substitutions in blib/etc/default/gbrowse-slave Performing variable substitutions in blib/etc/init.d/gbrowse-slave Use of uninitialized value $wwwuser in substitution (s///) at /build/buildd/gbrowse-2.54+dfsg/install_util/GBrowseInstall.pm line 821, line 20. Building GBrowse Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing debian/gbrowse/etc/default/gbrowse-slave Installing debian/gbrowse/etc/init.d/gbrowse-slave Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/GBrowse/ConfigData.pm mv debian/gbrowse/lib/perl5/* debian/gbrowse/usr/share/perl5 # Remove arch dependant data mv debian/gbrowse/usr/share/perl5/auto/Bio/Graphics/Browser2/CAlign/* debian/gbrowse-calign/usr/lib/perl5/auto/Bio/Graphics/Browser2/CAlign/ mv debian/gbrowse/usr/share/perl5/Bio/Graphics/Browser2/CAlign.pm debian/gbrowse-calign/usr/lib/perl5/Bio/Graphics/Browser2/CAlign.pm rm -rf debian/gbrowse/lib rm -f debian/gbrowse/usr/share/doc/gbrowse/INSTALL rm -f debian/gbrowse/usr/share/perl5/auto/GBrowse/.packlist rm -f debian/gbrowse/usr/share/gbrowse/htdocs/js/prototype.js rm -f debian/gbrowse/usr/share/gbrowse/htdocs/js/scriptaculous.js chmod 644 debian/gbrowse/etc/gbrowse/MobyServices/text_xml_renderer.pm chmod 644 debian/gbrowse/etc/gbrowse/synteny/oryza.synconf.disabled #Remove database (kept as separate package) rm -rf debian/gbrowse/var/lib/gbrowse/databases/* #Rename pl scripts in bin rename 's/\.pl//' debian/gbrowse/bin/*.pl mv debian/gbrowse/bin debian/gbrowse/usr/bin # Activate configuration files. find /build/buildd/gbrowse-2.54+dfsg/debian/gbrowse/etc -name '*.new' | xargs rename 's/.new//' rm -rf /build/buildd/gbrowse-2.54+dfsg/debian/gbrowse/usr/share/perl5/auto # Update conf files sed -i 's/gbrowse2/gbrowse/g' /build/buildd/gbrowse-2.54+dfsg/debian/gbrowse/etc/gbrowse/yeast*.conf sed -i 's/gbrowse2/gbrowse/g' /build/buildd/gbrowse-2.54+dfsg/debian/gbrowse/etc/gbrowse/slave*.conf make[1]: Leaving directory `/build/buildd/gbrowse-2.54+dfsg' dh_apache2 -a dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installman make[1]: Entering directory `/build/buildd/gbrowse-2.54+dfsg' #Rename due to perl extension seen as polish rename 's/\.pl\.1p/\.1p/' debian/gbrowse/man/man1/*.pl.1p mkdir -p debian/gbrowse-calign/man/man3/ mv debian/gbrowse/man/man3/Bio::Graphics::Browser2::CAlign.3pm debian/gbrowse-calign/man/man3/Bio::Graphics::Browser2::CAlign.3pm dh_installman rm -rf debian/gbrowse/man rm -rf debian/gbrowse-calign/man make[1]: Leaving directory `/build/buildd/gbrowse-2.54+dfsg' dh_perl -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform armhf: gbrowse-calign dh_strip debug symbol extraction: packages to act on: gbrowse-calign dh_strip debug symbol extraction: ignored packages: dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: building package `gbrowse-calign-dbgsym' in `../gbrowse-calign-dbgsym_2.54+dfsg-2_armhf.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a debian/rules override_dh_builddeb make[1]: Entering directory `/build/buildd/gbrowse-2.54+dfsg' dh_builddeb -- -Zbzip2 INFO: pkgstriptranslations version 118 pkgstriptranslations: processing gbrowse-calign (in debian/gbrowse-calign); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gbrowse-calign/DEBIAN/control, package gbrowse-calign, directory debian/gbrowse-calign pkgstripfiles: Truncating usr/share/doc/gbrowse-calign/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package gbrowse-calign took 0 s dpkg-deb: warning: 'debian/gbrowse-calign/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gbrowse-calign' in `../gbrowse-calign_2.54+dfsg-2_armhf.deb'. make[1]: Leaving directory `/build/buildd/gbrowse-2.54+dfsg' dpkg-genchanges -B -mUbuntu/armhf Build Daemon >../gbrowse_2.54+dfsg-2_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build gbrowse-2.54+dfsg dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20130702-1813 Publishing debug debs. chroot-autobuild/build/buildd/gbrowse-calign_2.54+dfsg-2_armhf.deb: new debian package, version 2.0. size 15822 bytes: control archive= 748 bytes. 535 bytes, 14 lines control 512 bytes, 6 lines md5sums Package: gbrowse-calign Source: gbrowse Version: 2.54+dfsg-2 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 104 Depends: perl (>= 5.14.2-21), perlapi-5.14.2, libc6 (>= 2.4), gbrowse Section: science Priority: optional Homepage: http://www.gbrowse.org/ Description: CAlign helper This package provides the CAlign helper for use with Realign. It speeds up Smith-Waterman alignment. chroot-autobuild/build/buildd/gbrowse-calign_2.54+dfsg-2_armhf.deb: drwxr-xr-x root/root 0 2013-07-02 18:13 ./ drwxr-xr-x root/root 0 2013-07-02 18:13 ./usr/ drwxr-xr-x root/root 0 2013-07-02 18:13 ./usr/share/ drwxr-xr-x root/root 0 2013-07-02 18:13 ./usr/share/man/ drwxr-xr-x root/root 0 2013-07-02 18:13 ./usr/share/man/man3/ -rw-r--r-- root/root 2080 2013-07-02 18:13 ./usr/share/man/man3/Bio::Graphics::Browser2::CAlign.3pm.gz drwxr-xr-x root/root 0 2013-07-02 18:13 ./usr/share/doc/ drwxr-xr-x root/root 0 2013-07-02 18:13 ./usr/share/doc/gbrowse-calign/ -rw-r--r-- root/root 18227 2012-02-19 14:48 ./usr/share/doc/gbrowse-calign/copyright -rw-r--r-- root/root 965 2013-07-02 18:13 ./usr/share/doc/gbrowse-calign/changelog.Debian.gz drwxr-xr-x root/root 0 2013-07-02 18:12 ./usr/lib/ drwxr-xr-x root/root 0 2013-07-02 18:12 ./usr/lib/perl5/ drwxr-xr-x root/root 0 2013-07-02 18:12 ./usr/lib/perl5/auto/ drwxr-xr-x root/root 0 2013-07-02 18:12 ./usr/lib/perl5/auto/Bio/ drwxr-xr-x root/root 0 2013-07-02 18:12 ./usr/lib/perl5/auto/Bio/Graphics/ drwxr-xr-x root/root 0 2013-07-02 18:12 ./usr/lib/perl5/auto/Bio/Graphics/Browser2/ drwxr-xr-x root/root 0 2013-07-02 18:13 ./usr/lib/perl5/auto/Bio/Graphics/Browser2/CAlign/ -rw-r--r-- root/root 0 2013-07-02 18:11 ./usr/lib/perl5/auto/Bio/Graphics/Browser2/CAlign/CAlign.bs -rw-r--r-- root/root 9628 2013-07-02 18:13 ./usr/lib/perl5/auto/Bio/Graphics/Browser2/CAlign/CAlign.so drwxr-xr-x root/root 0 2013-07-02 18:12 ./usr/lib/perl5/Bio/ drwxr-xr-x root/root 0 2013-07-02 18:12 ./usr/lib/perl5/Bio/Graphics/ drwxr-xr-x root/root 0 2013-07-02 18:13 ./usr/lib/perl5/Bio/Graphics/Browser2/ -rw-r--r-- root/root 1129 2013-07-02 18:11 ./usr/lib/perl5/Bio/Graphics/Browser2/CAlign.pm gbrowse_2.54+dfsg-2_armhf.changes: Format: 1.8 Date: Sat, 25 May 2013 11:46:26 +0200 Source: gbrowse Binary: gbrowse gbrowse-data gbrowse-calign Architecture: armhf Version: 2.54+dfsg-2 Distribution: saucy-proposed Urgency: low Maintainer: Ubuntu/armhf Build Daemon Changed-By: Olivier Sallou Description: gbrowse - GMOD Generic Genome Browser gbrowse-calign - CAlign helper gbrowse-data - Sample data to use GBrowse Closes: 669830 Changes: gbrowse (2.54+dfsg-2) unstable; urgency=low . * Transition to apache 2.4 (Closes: #669830). Checksums-Sha1: f81c871816eae6c5312395235a67936c6621461e 15822 gbrowse-calign_2.54+dfsg-2_armhf.deb Checksums-Sha256: 05554416ea70337e97665239af3f4fa6cceb3d4651e9877f7a9eeb2af6a62586 15822 gbrowse-calign_2.54+dfsg-2_armhf.deb Files: d9adf888694ef820de46489bb221f8db 15822 science optional gbrowse-calign_2.54+dfsg-2_armhf.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20130702-1813 Build needed 00:02:48, 32496k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', 'ba51e6eeda3845fb3b7a30f9b258325e0ade997e'] Scanning for processes to kill in build /home/buildd/build-ba51e6eeda3845fb3b7a30f9b258325e0ade997e/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'ba51e6eeda3845fb3b7a30f9b258325e0ade997e'] Unmounting chroot for build ba51e6eeda3845fb3b7a30f9b258325e0ade997e... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'ba51e6eeda3845fb3b7a30f9b258325e0ade997e'] Removing build ba51e6eeda3845fb3b7a30f9b258325e0ade997e