volvox example in gbrowse package tutorial uses invalid paths, is this a bug?
I just installed the current amd64 gbrowse package (gbrowse 2.42~dfsg-1build1 (amd64 binary) in ubuntu precise) from universal including all necessary dependencies.
At first glance all seemed right, with all sample pages accessible via (apache2) localhost. I decided to try following the included tutorial (dated 2010, this might be part of the problem, if indeed there is any). ATthe volvoxexample, I encountered these minor inconvieniences (pasting some scribbles I made while trying to get this example to work):
Gbrowse2 tutorial volvox example (section 1. 'The Basics') Ubuntu 12.04 LTS (64bit) 20121016
instead of first series of commands
# chown my_user_name /var/lib/
# chown my_user_name /etc/gbrowse2
# exit
%
do
(sudo su)
# chown my_user_name /var/lib/
# chown my_user_name /etc/gbrowse
# su my_user_name
%
gbrowse2 is in 'gbrowse' instead of 'gbrowse2' dirs (changing all other references accordingly)
instead of:
% cd /var/www/gbrowse2
% cp tutorial/
do
% cd /usr/share/
% cp tutorial/
% cp tutorial/
Apparently, all the stuff that was typically in /var/www is now in /usr/share/
in /etc/gbrowse/
[volvox]
description = Tutorial database
path = volvox.conf
in volvox.conf, replace
-dir '/home/
with:
-dir '/usr/share/
(or move the volvox db to your own homedir and replace the hardcoded username by yours)
I got this working by changing ownership of /var/lib/
Like I mentioned in the summary, I'm not exactly sure whether this qualifies as a bug or if it's even worthy of mentioning.
Cheers,
Alexander Bakker
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