RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos01-ppc64el-022 4.4.0-97-generic #120-Ubuntu SMP Tue Sep 19 17:26:02 UTC 2017 ppc64le Buildd toolchain package versions: launchpad-buildd_154 python-lpbuildd_154 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 3 Nov 03:10:37 ntpdate[1744]: adjust time server 10.211.37.1 offset 0.000143 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13653820 /home/buildd/filecache-default/64ab4a3b1843816d631a3747c16f42fa2d8de59d Creating target for build PACKAGEBUILD-13653820 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13653820 Starting target for build PACKAGEBUILD-13653820 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13653820 'deb http://ftpmaster.internal/ubuntu bionic main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu bionic-security main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu bionic-updates main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-13653820 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13653820 Updating target for build PACKAGEBUILD-13653820 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [85.4 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main ppc64el Packages [1014 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [541 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/restricted Translation-en [2788 B] Get:8 http://ftpmaster.internal/ubuntu bionic/universe ppc64el Packages [7859 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4797 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/multiverse ppc64el Packages [132 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/multiverse Translation-en [109 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el Packages [120 kB] Get:13 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [70.6 kB] Get:14 http://ftpmaster.internal/ubuntu bionic-proposed/universe ppc64el Packages [711 kB] Get:15 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [451 kB] Get:16 http://ftpmaster.internal/ubuntu bionic-proposed/multiverse ppc64el Packages [6620 B] Get:17 http://ftpmaster.internal/ubuntu bionic-proposed/multiverse Translation-en [5752 B] Fetched 16.3 MB in 3s (4679 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libwind0-heimdal Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: apt-transport-https* The following NEW packages will be installed: liblsan0 libtsan0 The following packages will be upgraded: apt base-files base-passwd binutils binutils-common binutils-powerpc64le-linux-gnu build-essential coreutils cpp-7 debconf dpkg dpkg-dev e2fslibs e2fsprogs g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv libapparmor1 libapt-pkg5.0 libasan4 libatomic1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcomerr2 libcurl3-gnutls libdpkg-perl libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libhogweed4 libitm1 libkeyutils1 libnettle6 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libpsl5 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libss2 libstdc++-7-dev libstdc++6 libsystemd0 libubsan0 libudev1 linux-libc-dev multiarch-support perl perl-base perl-modules-5.26 pinentry-curses systemd systemd-sysv sysvinit-utils tzdata 71 upgraded, 2 newly installed, 1 to remove and 0 not upgraded. Need to get 54.9 MB of archives. After this operation, 8158 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic/main ppc64el base-files ppc64el 10ubuntu1 [55.9 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main ppc64el coreutils ppc64el 8.26-3ubuntu4 [1251 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main ppc64el dpkg ppc64el 1.19.0.4ubuntu1 [1149 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main ppc64el libc6-dev ppc64el 2.26-0ubuntu2 [2458 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main ppc64el libc-dev-bin ppc64el 2.26-0ubuntu2 [65.4 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main ppc64el linux-libc-dev ppc64el 4.13.0-16.19 [946 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgomp1 ppc64el 7.2.0-12ubuntu1 [69.3 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main ppc64el libitm1 ppc64el 7.2.0-12ubuntu1 [29.7 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main ppc64el gcc-7-base ppc64el 7.2.0-12ubuntu1 [18.3 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgcc1 ppc64el 1:7.2.0-12ubuntu1 [29.7 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main ppc64el libatomic1 ppc64el 7.2.0-12ubuntu1 [8496 B] Get:12 http://ftpmaster.internal/ubuntu bionic/main ppc64el libasan4 ppc64el 7.2.0-12ubuntu1 [369 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main ppc64el liblsan0 ppc64el 7.2.0-12ubuntu1 [134 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtsan0 ppc64el 7.2.0-12ubuntu1 [289 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main ppc64el libubsan0 ppc64el 7.2.0-12ubuntu1 [136 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main ppc64el cpp-7 ppc64el 7.2.0-12ubuntu1 [6261 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcc1-0 ppc64el 7.2.0-12ubuntu1 [39.2 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main ppc64el g++-7 ppc64el 7.2.0-12ubuntu1 [7105 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main ppc64el gcc-7 ppc64el 7.2.0-12ubuntu1 [6898 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgcc-7-dev ppc64el 7.2.0-12ubuntu1 [985 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main ppc64el libstdc++-7-dev ppc64el 7.2.0-12ubuntu1 [1526 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main ppc64el libstdc++6 ppc64el 7.2.0-12ubuntu1 [449 kB] Get:23 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libgmp10 ppc64el 2:6.1.2+dfsg-1.1 [218 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main ppc64el libbinutils ppc64el 2.29.1-6ubuntu1 [457 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main ppc64el binutils ppc64el 2.29.1-6ubuntu1 [3330 B] Get:26 http://ftpmaster.internal/ubuntu bionic/main ppc64el binutils-common ppc64el 2.29.1-6ubuntu1 [190 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.29.1-6ubuntu1 [1969 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main ppc64el libc6 ppc64el 2.26-0ubuntu2 [2619 kB] Get:29 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el e2fslibs ppc64el 1.43.7-1 [173 kB] Get:30 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el e2fsprogs ppc64el 1.43.7-1 [510 kB] Get:31 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el perl-modules-5.26 all 5.26.1-2ubuntu1 [2760 kB] Get:32 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libperl5.26 ppc64el 5.26.1-2ubuntu1 [3405 kB] Get:33 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el perl ppc64el 5.26.1-2ubuntu1 [201 kB] Get:34 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el perl-base ppc64el 5.26.1-2ubuntu1 [1303 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main ppc64el base-passwd ppc64el 3.5.44 [50.1 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main ppc64el libc-bin ppc64el 2.26-0ubuntu2 [573 kB] Get:37 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el sysvinit-utils ppc64el 2.88dsf-59.10ubuntu1 [20.6 kB] Get:38 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libudev1 ppc64el 235-2ubuntu1 [60.5 kB] Get:39 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libapt-pkg5.0 ppc64el 1.6~alpha3 [879 kB] Get:40 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libgpg-error0 ppc64el 1.27-4 [42.1 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgcrypt20 ppc64el 1.7.9-1 [438 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main ppc64el gpgv ppc64el 2.1.15-1ubuntu8 [218 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main ppc64el libseccomp2 ppc64el 2.3.1-2.1ubuntu3 [47.2 kB] Get:44 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el apt ppc64el 1.6~alpha3 [1191 kB] Get:45 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el debconf all 1.5.64 [124 kB] Get:46 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libapparmor1 ppc64el 2.11.0-2ubuntu18 [29.9 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcap2 ppc64el 1:2.25-1.1 [13.7 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpcre3 ppc64el 2:8.39-5ubuntu3 [224 kB] Get:49 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libselinux1 ppc64el 2.7-2 [78.6 kB] Get:50 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el systemd ppc64el 235-2ubuntu1 [2958 kB] Get:51 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libsystemd0 ppc64el 235-2ubuntu1 [213 kB] Get:52 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el systemd-sysv ppc64el 235-2ubuntu1 [12.7 kB] Get:53 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libcap-ng0 ppc64el 0.7.7-3.1 [11.6 kB] Get:54 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libcomerr2 ppc64el 1.43.7-1 [11.6 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsemanage-common all 2.7-2 [6916 B] Get:56 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsemanage1 ppc64el 2.7-2 [85.4 kB] Get:57 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libss2 ppc64el 1.43.7-1 [11.4 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/main ppc64el libnettle6 ppc64el 3.3-2 [120 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main ppc64el libhogweed4 ppc64el 3.3-2 [134 kB] Get:60 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libp11-kit0 ppc64el 0.23.9-2 [167 kB] Get:61 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el pinentry-curses ppc64el 1.0.0-3 [37.5 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main ppc64el gnupg ppc64el 2.1.15-1ubuntu8 [847 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main ppc64el gnupg-agent ppc64el 2.1.15-1ubuntu8 [291 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsqlite3-0 ppc64el 3.20.1-2 [464 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main ppc64el multiarch-support ppc64el 2.26-0ubuntu2 [6832 B] Get:66 http://ftpmaster.internal/ubuntu bionic/main ppc64el tzdata all 2017c-1 [188 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main ppc64el libkeyutils1 ppc64el 1.5.9-9.1ubuntu1 [9896 B] Get:68 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpng16-16 ppc64el 1.6.34-1 [200 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main ppc64el dpkg-dev all 1.19.0.4ubuntu1 [607 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main ppc64el libdpkg-perl all 1.19.0.4ubuntu1 [211 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/main ppc64el build-essential ppc64el 12.4ubuntu1 [4754 B] Get:72 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libpsl5 ppc64el 0.18.0-4 [42.6 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcurl3-gnutls ppc64el 7.55.1-1ubuntu2.1 [197 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 54.9 MB in 0s (55.4 MB/s) (Reading database ... 12537 files and directories currently installed.) Preparing to unpack .../base-files_10ubuntu1_ppc64el.deb ... Unpacking base-files (10ubuntu1) over (9.6ubuntu101) ... Setting up base-files (10ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12537 files and directories currently installed.) Preparing to unpack .../coreutils_8.26-3ubuntu4_ppc64el.deb ... Unpacking coreutils (8.26-3ubuntu4) over (8.26-3ubuntu3) ... Setting up coreutils (8.26-3ubuntu4) ... (Reading database ... 12537 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.4ubuntu1_ppc64el.deb ... Unpacking dpkg (1.19.0.4ubuntu1) over (1.18.24ubuntu1) ... Setting up dpkg (1.19.0.4ubuntu1) ... Installing new version of config file /etc/alternatives/README ... Installing new version of config file /etc/cron.daily/dpkg ... Installing new version of config file /etc/logrotate.d/dpkg ... (Reading database ... 12539 files and directories currently installed.) Preparing to unpack .../0-libc6-dev_2.26-0ubuntu2_ppc64el.deb ... Unpacking libc6-dev:ppc64el (2.26-0ubuntu2) over (2.26-0ubuntu1) ... Preparing to unpack .../1-libc-dev-bin_2.26-0ubuntu2_ppc64el.deb ... Unpacking libc-dev-bin (2.26-0ubuntu2) over (2.26-0ubuntu1) ... Preparing to unpack .../2-linux-libc-dev_4.13.0-16.19_ppc64el.deb ... Unpacking linux-libc-dev:ppc64el (4.13.0-16.19) over (4.13.0-11.12) ... Preparing to unpack .../3-libgomp1_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking libgomp1:ppc64el (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../4-libitm1_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking libitm1:ppc64el (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../5-gcc-7-base_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking gcc-7-base:ppc64el (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Setting up gcc-7-base:ppc64el (7.2.0-12ubuntu1) ... (Reading database ... 12539 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a7.2.0-12ubuntu1_ppc64el.deb ... Unpacking libgcc1:ppc64el (1:7.2.0-12ubuntu1) over (1:7.2.0-6ubuntu1) ... Setting up libgcc1:ppc64el (1:7.2.0-12ubuntu1) ... (Reading database ... 12539 files and directories currently installed.) Preparing to unpack .../00-libatomic1_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking libatomic1:ppc64el (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../01-libasan4_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking libasan4:ppc64el (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Selecting previously unselected package liblsan0:ppc64el. Preparing to unpack .../02-liblsan0_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking liblsan0:ppc64el (7.2.0-12ubuntu1) ... Selecting previously unselected package libtsan0:ppc64el. Preparing to unpack .../03-libtsan0_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking libtsan0:ppc64el (7.2.0-12ubuntu1) ... Preparing to unpack .../04-libubsan0_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking libubsan0:ppc64el (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../05-cpp-7_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking cpp-7 (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../06-libcc1-0_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking libcc1-0:ppc64el (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../07-g++-7_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking g++-7 (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../08-gcc-7_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking gcc-7 (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../09-libgcc-7-dev_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking libgcc-7-dev:ppc64el (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../10-libstdc++-7-dev_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking libstdc++-7-dev:ppc64el (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../11-libstdc++6_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking libstdc++6:ppc64el (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Setting up libstdc++6:ppc64el (7.2.0-12ubuntu1) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.1.2+dfsg-1.1_ppc64el.deb ... Unpacking libgmp10:ppc64el (2:6.1.2+dfsg-1.1) over (2:6.1.2+dfsg-1) ... Setting up libgmp10:ppc64el (2:6.1.2+dfsg-1.1) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../libbinutils_2.29.1-6ubuntu1_ppc64el.deb ... Unpacking libbinutils:ppc64el (2.29.1-6ubuntu1) over (2.29.1-1ubuntu1) ... Preparing to unpack .../binutils_2.29.1-6ubuntu1_ppc64el.deb ... Unpacking binutils (2.29.1-6ubuntu1) over (2.29.1-1ubuntu1) ... Preparing to unpack .../binutils-common_2.29.1-6ubuntu1_ppc64el.deb ... Unpacking binutils-common:ppc64el (2.29.1-6ubuntu1) over (2.29.1-1ubuntu1) ... Preparing to unpack .../binutils-powerpc64le-linux-gnu_2.29.1-6ubuntu1_ppc64el.deb ... Unpacking binutils-powerpc64le-linux-gnu (2.29.1-6ubuntu1) over (2.29.1-1ubuntu1) ... Preparing to unpack .../libc6_2.26-0ubuntu2_ppc64el.deb ... Unpacking libc6:ppc64el (2.26-0ubuntu2) over (2.26-0ubuntu1) ... Setting up libc6:ppc64el (2.26-0ubuntu2) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.43.7-1_ppc64el.deb ... Unpacking e2fslibs:ppc64el (1.43.7-1) over (1.43.5-1) ... Setting up e2fslibs:ppc64el (1.43.7-1) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.43.7-1_ppc64el.deb ... Unpacking e2fsprogs (1.43.7-1) over (1.43.5-1) ... Setting up e2fsprogs (1.43.7-1) ... Installing new version of config file /etc/mke2fs.conf ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../perl_5.26.1-2ubuntu1_ppc64el.deb ... Unpacking perl (5.26.1-2ubuntu1) over (5.26.0-8ubuntu1) ... Preparing to unpack .../perl-modules-5.26_5.26.1-2ubuntu1_all.deb ... Unpacking perl-modules-5.26 (5.26.1-2ubuntu1) over (5.26.0-8ubuntu1) ... Preparing to unpack .../libperl5.26_5.26.1-2ubuntu1_ppc64el.deb ... Unpacking libperl5.26:ppc64el (5.26.1-2ubuntu1) over (5.26.0-8ubuntu1) ... Preparing to unpack .../perl-base_5.26.1-2ubuntu1_ppc64el.deb ... Unpacking perl-base (5.26.1-2ubuntu1) over (5.26.0-8ubuntu1) ... Setting up perl-base (5.26.1-2ubuntu1) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.44_ppc64el.deb ... Unpacking base-passwd (3.5.44) over (3.5.43) ... Setting up base-passwd (3.5.44) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../libc-bin_2.26-0ubuntu2_ppc64el.deb ... Unpacking libc-bin (2.26-0ubuntu2) over (2.26-0ubuntu1) ... Setting up libc-bin (2.26-0ubuntu2) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.88dsf-59.10ubuntu1_ppc64el.deb ... Unpacking sysvinit-utils (2.88dsf-59.10ubuntu1) over (2.88dsf-59.8git1) ... Setting up sysvinit-utils (2.88dsf-59.10ubuntu1) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../libudev1_235-2ubuntu1_ppc64el.deb ... Unpacking libudev1:ppc64el (235-2ubuntu1) over (234-2ubuntu10) ... Setting up libudev1:ppc64el (235-2ubuntu1) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.6~alpha3_ppc64el.deb ... Unpacking libapt-pkg5.0:ppc64el (1.6~alpha3) over (1.5~rc4) ... Setting up libapt-pkg5.0:ppc64el (1.6~alpha3) ... (Reading database ... 12554 files and directories currently installed.) Removing apt-transport-https (1.5~rc4) ... (Reading database ... 12546 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.27-4_ppc64el.deb ... Unpacking libgpg-error0:ppc64el (1.27-4) over (1.27-3) ... Setting up libgpg-error0:ppc64el (1.27-4) ... (Reading database ... 12546 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.9-1_ppc64el.deb ... Unpacking libgcrypt20:ppc64el (1.7.9-1) over (1.7.8-2ubuntu1) ... Setting up libgcrypt20:ppc64el (1.7.9-1) ... (Reading database ... 12546 files and directories currently installed.) Preparing to unpack .../gpgv_2.1.15-1ubuntu8_ppc64el.deb ... Unpacking gpgv (2.1.15-1ubuntu8) over (2.1.15-1ubuntu7) ... Setting up gpgv (2.1.15-1ubuntu8) ... (Reading database ... 12546 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.1-2.1ubuntu3_ppc64el.deb ... Unpacking libseccomp2:ppc64el (2.3.1-2.1ubuntu3) over (2.3.1-2.1ubuntu2) ... Setting up libseccomp2:ppc64el (2.3.1-2.1ubuntu3) ... (Reading database ... 12546 files and directories currently installed.) Preparing to unpack .../apt_1.6~alpha3_ppc64el.deb ... Unpacking apt (1.6~alpha3) over (1.5~rc4) ... Setting up apt (1.6~alpha3) ... (Reading database ... 12542 files and directories currently installed.) Preparing to unpack .../debconf_1.5.64_all.deb ... Unpacking debconf (1.5.64) over (1.5.63) ... Setting up debconf (1.5.64) ... (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../libapparmor1_2.11.0-2ubuntu18_ppc64el.deb ... Unpacking libapparmor1:ppc64el (2.11.0-2ubuntu18) over (2.11.0-2ubuntu17) ... Preparing to unpack .../libcap2_1%3a2.25-1.1_ppc64el.deb ... Unpacking libcap2:ppc64el (1:2.25-1.1) over (1:2.25-1) ... Preparing to unpack .../libpcre3_2%3a8.39-5ubuntu3_ppc64el.deb ... Unpacking libpcre3:ppc64el (2:8.39-5ubuntu3) over (2:8.39-4) ... Setting up libpcre3:ppc64el (2:8.39-5ubuntu3) ... (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../libselinux1_2.7-2_ppc64el.deb ... Unpacking libselinux1:ppc64el (2.7-2) over (2.7-1) ... Setting up libselinux1:ppc64el (2.7-2) ... (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../systemd_235-2ubuntu1_ppc64el.deb ... Unpacking systemd (235-2ubuntu1) over (234-2ubuntu10) ... Preparing to unpack .../libsystemd0_235-2ubuntu1_ppc64el.deb ... Unpacking libsystemd0:ppc64el (235-2ubuntu1) over (234-2ubuntu10) ... Setting up libsystemd0:ppc64el (235-2ubuntu1) ... Setting up libapparmor1:ppc64el (2.11.0-2ubuntu18) ... Setting up libcap2:ppc64el (1:2.25-1.1) ... Setting up systemd (235-2ubuntu1) ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/system.conf ... Removing empty /etc/rc.local Removed /etc/systemd/system/network-online.target.wants/systemd-networkd-wait-online.service. (Reading database ... 12542 files and directories currently installed.) Preparing to unpack .../systemd-sysv_235-2ubuntu1_ppc64el.deb ... Unpacking systemd-sysv (235-2ubuntu1) over (234-2ubuntu10) ... Preparing to unpack .../libcap-ng0_0.7.7-3.1_ppc64el.deb ... Unpacking libcap-ng0:ppc64el (0.7.7-3.1) over (0.7.7-3build1) ... Setting up libcap-ng0:ppc64el (0.7.7-3.1) ... (Reading database ... 12542 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.43.7-1_ppc64el.deb ... Unpacking libcomerr2:ppc64el (1.43.7-1) over (1.43.5-1) ... Setting up libcomerr2:ppc64el (1.43.7-1) ... (Reading database ... 12542 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.7-2_all.deb ... Unpacking libsemanage-common (2.7-2) over (2.7-1) ... Setting up libsemanage-common (2.7-2) ... (Reading database ... 12542 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.7-2_ppc64el.deb ... Unpacking libsemanage1:ppc64el (2.7-2) over (2.7-1) ... Setting up libsemanage1:ppc64el (2.7-2) ... (Reading database ... 12542 files and directories currently installed.) Preparing to unpack .../libss2_1.43.7-1_ppc64el.deb ... Unpacking libss2:ppc64el (1.43.7-1) over (1.43.5-1) ... Setting up libss2:ppc64el (1.43.7-1) ... (Reading database ... 12542 files and directories currently installed.) Preparing to unpack .../libnettle6_3.3-2_ppc64el.deb ... Unpacking libnettle6:ppc64el (3.3-2) over (3.3-1) ... Setting up libnettle6:ppc64el (3.3-2) ... (Reading database ... 12542 files and directories currently installed.) Preparing to unpack .../libhogweed4_3.3-2_ppc64el.deb ... Unpacking libhogweed4:ppc64el (3.3-2) over (3.3-1) ... Setting up libhogweed4:ppc64el (3.3-2) ... (Reading database ... 12542 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.9-2_ppc64el.deb ... Unpacking libp11-kit0:ppc64el (0.23.9-2) over (0.23.7-3) ... Setting up libp11-kit0:ppc64el (0.23.9-2) ... (Reading database ... 12542 files and directories currently installed.) Preparing to unpack .../00-pinentry-curses_1.0.0-3_ppc64el.deb ... Unpacking pinentry-curses (1.0.0-3) over (1.0.0-2) ... Preparing to unpack .../01-gnupg_2.1.15-1ubuntu8_ppc64el.deb ... Unpacking gnupg (2.1.15-1ubuntu8) over (2.1.15-1ubuntu7) ... Preparing to unpack .../02-gnupg-agent_2.1.15-1ubuntu8_ppc64el.deb ... Unpacking gnupg-agent (2.1.15-1ubuntu8) over (2.1.15-1ubuntu7) ... Preparing to unpack .../03-libsqlite3-0_3.20.1-2_ppc64el.deb ... Unpacking libsqlite3-0:ppc64el (3.20.1-2) over (3.19.3-3) ... Preparing to unpack .../04-multiarch-support_2.26-0ubuntu2_ppc64el.deb ... Unpacking multiarch-support (2.26-0ubuntu2) over (2.26-0ubuntu1) ... Preparing to unpack .../05-tzdata_2017c-1_all.deb ... Unpacking tzdata (2017c-1) over (2017b-2) ... Preparing to unpack .../06-libkeyutils1_1.5.9-9.1ubuntu1_ppc64el.deb ... Unpacking libkeyutils1:ppc64el (1.5.9-9.1ubuntu1) over (1.5.9-9ubuntu1) ... Preparing to unpack .../07-libpng16-16_1.6.34-1_ppc64el.deb ... Unpacking libpng16-16:ppc64el (1.6.34-1) over (1.6.32-2) ... Preparing to unpack .../08-dpkg-dev_1.19.0.4ubuntu1_all.deb ... Unpacking dpkg-dev (1.19.0.4ubuntu1) over (1.18.24ubuntu1) ... Preparing to unpack .../09-libdpkg-perl_1.19.0.4ubuntu1_all.deb ... Unpacking libdpkg-perl (1.19.0.4ubuntu1) over (1.18.24ubuntu1) ... Preparing to unpack .../10-build-essential_12.4ubuntu1_ppc64el.deb ... Unpacking build-essential (12.4ubuntu1) over (12.1ubuntu2) ... Preparing to unpack .../11-libpsl5_0.18.0-4_ppc64el.deb ... Unpacking libpsl5:ppc64el (0.18.0-4) over (0.18.0-2) ... Preparing to unpack .../12-libcurl3-gnutls_7.55.1-1ubuntu2.1_ppc64el.deb ... Unpacking libcurl3-gnutls:ppc64el (7.55.1-1ubuntu2.1) over (7.55.1-1ubuntu1) ... Setting up libgomp1:ppc64el (7.2.0-12ubuntu1) ... Setting up libatomic1:ppc64el (7.2.0-12ubuntu1) ... Setting up libcc1-0:ppc64el (7.2.0-12ubuntu1) ... Setting up libasan4:ppc64el (7.2.0-12ubuntu1) ... Setting up libpng16-16:ppc64el (1.6.34-1) ... Setting up libpsl5:ppc64el (0.18.0-4) ... Setting up multiarch-support (2.26-0ubuntu2) ... Setting up tzdata (2017c-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Nov 3 03:10:59 UTC 2017. Universal Time is now: Fri Nov 3 03:10:59 UTC 2017. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (235-2ubuntu1) ... Setting up libubsan0:ppc64el (7.2.0-12ubuntu1) ... Setting up libtsan0:ppc64el (7.2.0-12ubuntu1) ... Setting up linux-libc-dev:ppc64el (4.13.0-16.19) ... Setting up perl-modules-5.26 (5.26.1-2ubuntu1) ... Setting up cpp-7 (7.2.0-12ubuntu1) ... Setting up liblsan0:ppc64el (7.2.0-12ubuntu1) ... Setting up binutils-common:ppc64el (2.29.1-6ubuntu1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up libperl5.26:ppc64el (5.26.1-2ubuntu1) ... Setting up libsqlite3-0:ppc64el (3.20.1-2) ... Setting up pinentry-curses (1.0.0-3) ... Setting up libc-dev-bin (2.26-0ubuntu2) ... Setting up libkeyutils1:ppc64el (1.5.9-9.1ubuntu1) ... Setting up gnupg-agent (2.1.15-1ubuntu8) ... Setting up libc6-dev:ppc64el (2.26-0ubuntu2) ... Setting up libitm1:ppc64el (7.2.0-12ubuntu1) ... Setting up libbinutils:ppc64el (2.29.1-6ubuntu1) ... Setting up libcurl3-gnutls:ppc64el (7.55.1-1ubuntu2.1) ... Setting up binutils-powerpc64le-linux-gnu (2.29.1-6ubuntu1) ... Setting up gnupg (2.1.15-1ubuntu8) ... Setting up libgcc-7-dev:ppc64el (7.2.0-12ubuntu1) ... Setting up libstdc++-7-dev:ppc64el (7.2.0-12ubuntu1) ... Setting up perl (5.26.1-2ubuntu1) ... Setting up binutils (2.29.1-6ubuntu1) ... Setting up gcc-7 (7.2.0-12ubuntu1) ... Setting up g++-7 (7.2.0-12ubuntu1) ... Setting up libdpkg-perl (1.19.0.4ubuntu1) ... Setting up dpkg-dev (1.19.0.4ubuntu1) ... Setting up build-essential (12.4ubuntu1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13653820 ppc64el bionic-proposed -c chroot:build-PACKAGEBUILD-13653820 --arch=ppc64el --dist=bionic-proposed --nolog clustalx_2.1+lgpl-6.dsc Initiating build PACKAGEBUILD-13653820 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-97-generic #120-Ubuntu SMP Tue Sep 19 17:26:02 UTC 2017 ppc64le sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-ppc64el-022.buildd +==============================================================================+ | clustalx 2.1+lgpl-6 (ppc64el) 03 Nov 2017 03:11 | +==============================================================================+ Package: clustalx Version: 2.1+lgpl-6 Source Version: 2.1+lgpl-6 Distribution: bionic-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/clustalx-2QrCNN/clustalx-2.1+lgpl' with '<>' I: NOTICE: Log filtering will replace 'build/clustalx-2QrCNN' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13653820/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clustalx_2.1+lgpl-6.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-DpuHoM/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-DpuHoM/apt_archive ./ InRelease Get:2 copy:/<>/resolver-DpuHoM/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-DpuHoM/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-DpuHoM/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-DpuHoM/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libwind0-heimdal Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-DpuHoM/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12543 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools Filtered Build-Depends: debhelper (>= 9), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools dpkg-deb: building package 'sbuild-build-depends-clustalx-dummy' in '/<>/resolver-uy9Rlf/apt_archive/sbuild-build-depends-clustalx-dummy.deb'. Ign:1 copy:/<>/resolver-uy9Rlf/apt_archive ./ InRelease Get:2 copy:/<>/resolver-uy9Rlf/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-uy9Rlf/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-uy9Rlf/apt_archive ./ Sources [229 B] Get:5 copy:/<>/resolver-uy9Rlf/apt_archive ./ Packages [549 B] Fetched 2897 B in 0s (259 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install clustalx build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libkrb5-26-heimdal libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libwind0-heimdal Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian iso-codes libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libboost-filesystem1.65.1 libboost-system1.65.1 libbsd0 libcap2-bin libcapnp-0.6.1 libcroco3 libcups2 libdbus-1-3 libdouble-conversion1 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl1-mesa libegl1-mesa-dev libelf1 libevdev2 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgbm1 libgl1-mesa-dev libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libgles2-mesa libgles2-mesa-dev libglib2.0-0 libglu1-mesa libglu1-mesa-dev libgraphite2-3 libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libharfbuzz0b libhyphen0 libice6 libicu59 libinput-bin libinput10 libjpeg-turbo8 libjpeg8 libllvm5.0 libmagic-mgc libmagic1 libmirclient9 libmircommon7 libmircore1 libmirprotobuf3 libmtdev1 liborc-0.4-0 libpipeline1 libprotobuf-lite10 libpthread-stubs0-dev libqt5concurrent5 libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 libqt5gui5 libqt5help5 libqt5network5 libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 libqt5quickwidgets5 libqt5sensors5 libqt5sql5 libqt5test5 libqt5webchannel5 libqt5webkit5 libqt5widgets5 libqt5xml5 libsensors4 libsigsegv2 libsm6 libtimedate-perl libtool libwacom-common libwacom2 libwayland-bin libwayland-client0 libwayland-cursor0 libwayland-dev libwayland-egl1-mesa libwayland-server0 libwebp6 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render-util0 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb-xinerama0 libxcb-xkb1 libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxi6 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxshmfence-dev libxshmfence1 libxslt1.1 libxxf86vm-dev libxxf86vm1 m4 man-db mesa-common-dev po-debconf qt5-qmake qt5-qmake-bin qtbase5-dev qtbase5-dev-tools qtchooser qttools5-dev-tools ucf x11-common x11proto-core-dev x11proto-damage-dev x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev x11proto-input-dev x11proto-kb-dev x11proto-xext-dev x11proto-xf86vidmode-dev xkb-data xorg-sgml-doctools xtrans-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff isoquery cups-common libvisual-0.4-plugins gstreamer1.0-tools libthai0 qt5-image-formats-plugins qtwayland5 qt5-qmltooling-plugins lm-sensors libtool-doc gfortran | fortran95-compiler gcj-jdk libxcb-doc libxext-doc m4-doc less www-browser libmail-box-perl default-libmysqlclient-dev firebird-dev libpq-dev libsqlite3-dev unixodbc-dev Recommended packages: curl | wget | lynx-cur libpam-cap dbus libarchive-cpio-perl libtxc-dxtn-s2tc | libtxc-dxtn-s2tc0 | libtxc-dxtn0 libglib2.0-data shared-mime-info xdg-user-dirs gstreamer1.0-plugins-base qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme geoclue-2.0 libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase libltdl-dev libwacom-bin libx11-doc libmail-sendmail-perl libqt5opengl5-dev libqt5sql5-sqlite The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian iso-codes libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libboost-filesystem1.65.1 libboost-system1.65.1 libbsd0 libcap2-bin libcapnp-0.6.1 libcroco3 libcups2 libdbus-1-3 libdouble-conversion1 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl1-mesa libegl1-mesa-dev libelf1 libevdev2 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgbm1 libgl1-mesa-dev libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libgles2-mesa libgles2-mesa-dev libglib2.0-0 libglu1-mesa libglu1-mesa-dev libgraphite2-3 libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libharfbuzz0b libhyphen0 libice6 libicu59 libinput-bin libinput10 libjpeg-turbo8 libjpeg8 libllvm5.0 libmagic-mgc libmagic1 libmirclient9 libmircommon7 libmircore1 libmirprotobuf3 libmtdev1 liborc-0.4-0 libpipeline1 libprotobuf-lite10 libpthread-stubs0-dev libqt5concurrent5 libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 libqt5gui5 libqt5help5 libqt5network5 libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 libqt5quickwidgets5 libqt5sensors5 libqt5sql5 libqt5test5 libqt5webchannel5 libqt5webkit5 libqt5widgets5 libqt5xml5 libsensors4 libsigsegv2 libsm6 libtimedate-perl libtool libwacom-common libwacom2 libwayland-bin libwayland-client0 libwayland-cursor0 libwayland-dev libwayland-egl1-mesa libwayland-server0 libwebp6 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render-util0 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb-xinerama0 libxcb-xkb1 libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxi6 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxshmfence-dev libxshmfence1 libxslt1.1 libxxf86vm-dev libxxf86vm1 m4 man-db mesa-common-dev po-debconf qt5-qmake qt5-qmake-bin qtbase5-dev qtbase5-dev-tools qtchooser qttools5-dev-tools sbuild-build-depends-clustalx-dummy ucf x11-common x11proto-core-dev x11proto-damage-dev x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev x11proto-input-dev x11proto-kb-dev x11proto-xext-dev x11proto-xf86vidmode-dev xkb-data xorg-sgml-doctools xtrans-dev 0 upgraded, 190 newly installed, 1 to remove and 0 not upgraded. Need to get 79.4 MB of archives. After this operation, 482 MB of additional disk space will be used. Get:1 copy:/<>/resolver-uy9Rlf/apt_archive ./ sbuild-build-depends-clustalx-dummy 0.invalid.0 [876 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxau6 ppc64el 1:1.0.8-1 [7460 B] Get:3 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libbsd0 ppc64el 0.8.6-2 [50.1 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxdmcp6 ppc64el 1:1.1.2-3 [11.0 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb1 ppc64el 1.12-1ubuntu1 [43.9 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main ppc64el libx11-data all 2:1.6.4-3 [114 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main ppc64el libx11-6 ppc64el 2:1.6.4-3 [566 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxext6 ppc64el 2:1.3.3-1 [30.7 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main ppc64el groff-base ppc64el 1.22.3-9 [1361 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main ppc64el bsdmainutils ppc64el 9.0.12+nmu1ubuntu1 [179 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpipeline1 ppc64el 1.4.2-1 [23.6 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main ppc64el man-db ppc64el 2.7.6.1-2 [890 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main ppc64el libexpat1 ppc64el 2.2.3-1 [76.2 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main ppc64el libfreetype6 ppc64el 2.8-0.2ubuntu2 [385 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main ppc64el ucf all 3.0036 [52.9 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main ppc64el fonts-dejavu-core all 2.37-1 [1041 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main ppc64el fontconfig-config all 2.12.6-0ubuntu1 [55.5 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main ppc64el libfontconfig1 ppc64el 2.12.6-0ubuntu1 [166 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main ppc64el fontconfig ppc64el 2.12.6-0ubuntu1 [169 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main ppc64el libjpeg-turbo8 ppc64el 1.5.2-0ubuntu5 [146 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main ppc64el libmtdev1 ppc64el 1.1.5-1ubuntu2 [15.3 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main ppc64el libglib2.0-0 ppc64el 2.54.1-1ubuntu1 [1160 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcap2-bin ppc64el 1:2.25-1.1 [21.4 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgstreamer1.0-0 ppc64el 1.12.3-1 [760 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main ppc64el liborc-0.4-0 ppc64el 1:0.4.27-1 [159 kB] Get:26 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el iso-codes all 3.76-1 [2320 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgstreamer-plugins-base1.0-0 ppc64el 1.12.3-1 [691 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main ppc64el libhyphen0 ppc64el 2.8.8-5 [27.1 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main ppc64el libicu59 ppc64el 59.1-3ubuntu1 [8110 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main ppc64el libjpeg8 ppc64el 8c-2ubuntu8 [2146 B] Get:31 http://ftpmaster.internal/ubuntu bionic/main ppc64el libdouble-conversion1 ppc64el 2.0.1-4ubuntu1 [34.2 kB] Get:32 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libqt5core5a ppc64el 5.9.2+dfsg-4ubuntu5 [2087 kB] Get:33 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libdrm-common all 2.4.85-1 [4788 B] Get:34 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libdrm2 ppc64el 2.4.85-1 [32.9 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main ppc64el libwayland-client0 ppc64el 1.14.0-1 [22.6 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main ppc64el libwayland-server0 ppc64el 1.14.0-1 [28.6 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgbm1 ppc64el 17.2.2-0ubuntu1 [28.0 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main ppc64el libboost-system1.65.1 ppc64el 1.65.1+dfsg-0ubuntu2 [11.2 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcapnp-0.6.1 ppc64el 0.6.1-1 [682 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main ppc64el libboost-filesystem1.65.1 ppc64el 1.65.1+dfsg-0ubuntu2 [42.6 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main ppc64el libmircore1 ppc64el 0.28.1+18.04.20171030-0ubuntu1 [34.4 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main ppc64el libmircommon7 ppc64el 0.28.1+18.04.20171030-0ubuntu1 [79.5 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main ppc64el libprotobuf-lite10 ppc64el 3.0.0-9ubuntu5 [106 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main ppc64el libmirprotobuf3 ppc64el 0.28.1+18.04.20171030-0ubuntu1 [139 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main ppc64el xkb-data all 2.19-1.1ubuntu1 [312 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxkbcommon0 ppc64el 0.7.1-2 [118 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main ppc64el libmirclient9 ppc64el 0.28.1+18.04.20171030-0ubuntu1 [212 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main ppc64el libx11-xcb1 ppc64el 2:1.6.4-3 [9832 B] Get:49 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-dri2-0 ppc64el 1.12-1ubuntu1 [6600 B] Get:50 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-dri3-0 ppc64el 1.12-1ubuntu1 [5134 B] Get:51 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-present0 ppc64el 1.12-1ubuntu1 [5420 B] Get:52 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-sync1 ppc64el 1.12-1ubuntu1 [8320 B] Get:53 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-xfixes0 ppc64el 1.12-1ubuntu1 [8622 B] Get:54 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxshmfence1 ppc64el 1.2-1 [5170 B] Get:55 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libdrm-amdgpu1 ppc64el 2.4.85-1 [20.7 kB] Get:56 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libdrm-nouveau2 ppc64el 2.4.85-1 [18.2 kB] Get:57 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libdrm-radeon1 ppc64el 2.4.85-1 [26.1 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/main ppc64el libelf1 ppc64el 0.170-0.1 [46.6 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main ppc64el libglapi-mesa ppc64el 17.2.2-0ubuntu1 [23.4 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main ppc64el libedit2 ppc64el 3.1-20170329-1 [79.6 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main ppc64el libllvm5.0 ppc64el 1:5.0-4 [12.8 MB] Get:62 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsensors4 ppc64el 1:3.4.0-4 [28.6 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgl1-mesa-dri ppc64el 17.2.2-0ubuntu1 [5882 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main ppc64el libegl1-mesa ppc64el 17.2.2-0ubuntu1 [95.7 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-glx0 ppc64el 1.12-1ubuntu1 [19.7 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxdamage1 ppc64el 1:1.1.4-3 [7056 B] Get:67 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxfixes3 ppc64el 1:5.0.3-1 [10.6 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxxf86vm1 ppc64el 1:1.1.4-1 [10.7 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgl1-mesa-glx ppc64el 17.2.2-0ubuntu1 [139 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgraphite2-3 ppc64el 1.3.10-6 [66.6 kB] Get:71 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libharfbuzz0b ppc64el 1.6.2-1 [227 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main ppc64el x11-common all 1:7.7+19ubuntu3 [22.0 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/main ppc64el libice6 ppc64el 2:1.0.9-2 [38.0 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main ppc64el libevdev2 ppc64el 1.5.7+dfsg-1 [27.6 kB] Get:75 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgudev-1.0-0 ppc64el 1:232-1 [11.8 kB] Get:76 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libwacom-common all 0.26-1 [34.7 kB] Get:77 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libwacom2 ppc64el 0.26-1 [19.9 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main ppc64el libinput-bin ppc64el 1.8.2-1ubuntu2 [9960 B] Get:79 http://ftpmaster.internal/ubuntu bionic/main ppc64el libinput10 ppc64el 1.8.2-1ubuntu2 [84.7 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main ppc64el libdbus-1-3 ppc64el 1.12.0-1ubuntu1 [182 kB] Get:81 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libqt5dbus5 ppc64el 5.9.2+dfsg-4ubuntu5 [181 kB] Get:82 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libqt5network5 ppc64el 5.9.2+dfsg-4ubuntu5 [581 kB] Get:83 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsm6 ppc64el 2:1.2.2-1 [15.1 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-icccm4 ppc64el 0.4.1-1ubuntu1 [10.0 kB] Get:85 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-shm0 ppc64el 1.12-1ubuntu1 [5494 B] Get:86 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-util1 ppc64el 0.4.0-0ubuntu3 [11.0 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-image0 ppc64el 0.4.0-1build1 [12.4 kB] Get:88 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-keysyms1 ppc64el 0.4.0-1 [8308 B] Get:89 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-randr0 ppc64el 1.12-1ubuntu1 [14.5 kB] Get:90 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-render0 ppc64el 1.12-1ubuntu1 [13.4 kB] Get:91 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-render-util0 ppc64el 0.3.9-1 [9720 B] Get:92 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-shape0 ppc64el 1.12-1ubuntu1 [5756 B] Get:93 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-xinerama0 ppc64el 1.12-1ubuntu1 [5218 B] Get:94 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-xkb1 ppc64el 1.12-1ubuntu1 [27.7 kB] Get:95 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxi6 ppc64el 2:1.7.9-1 [29.0 kB] Get:96 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxkbcommon-x11-0 ppc64el 0.7.1-2 [13.7 kB] Get:97 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libqt5gui5 ppc64el 5.9.2+dfsg-4ubuntu5 [2385 kB] Get:98 http://ftpmaster.internal/ubuntu bionic-proposed/universe ppc64el libqt5positioning5 ppc64el 5.9.2+dfsg-2build1 [121 kB] Get:99 http://ftpmaster.internal/ubuntu bionic/main ppc64el libavahi-common-data ppc64el 0.6.32-1ubuntu1 [22.1 kB] Get:100 http://ftpmaster.internal/ubuntu bionic/main ppc64el libavahi-common3 ppc64el 0.6.32-1ubuntu1 [19.5 kB] Get:101 http://ftpmaster.internal/ubuntu bionic/main ppc64el libavahi-client3 ppc64el 0.6.32-1ubuntu1 [22.5 kB] Get:102 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libcups2 ppc64el 2.2.6-1 [241 kB] Get:103 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libqt5widgets5 ppc64el 5.9.2+dfsg-4ubuntu5 [2069 kB] Get:104 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libqt5printsupport5 ppc64el 5.9.2+dfsg-4ubuntu5 [168 kB] Get:105 http://ftpmaster.internal/ubuntu bionic-proposed/universe ppc64el libqt5qml5 ppc64el 5.9.2-3ubuntu1 [1072 kB] Get:106 http://ftpmaster.internal/ubuntu bionic-proposed/universe ppc64el libqt5quick5 ppc64el 5.9.2-3ubuntu1 [1083 kB] Get:107 http://ftpmaster.internal/ubuntu bionic-proposed/universe ppc64el libqt5sensors5 ppc64el 5.9.2-2build1 [104 kB] Get:108 http://ftpmaster.internal/ubuntu bionic-proposed/universe ppc64el libqt5webchannel5 ppc64el 5.9.2-2 [45.8 kB] Get:109 http://ftpmaster.internal/ubuntu bionic/main ppc64el libwebp6 ppc64el 0.6.0-3 [205 kB] Get:110 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxml2 ppc64el 2.9.4+dfsg1-5ubuntu1 [621 kB] Get:111 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxslt1.1 ppc64el 1.1.29-2.1ubuntu1 [155 kB] Get:112 http://ftpmaster.internal/ubuntu bionic-proposed/universe ppc64el libqt5webkit5 ppc64el 5.212.0~alpha2-5 [10.6 MB] Get:113 http://ftpmaster.internal/ubuntu bionic/main ppc64el libmagic-mgc ppc64el 1:5.32-1 [184 kB] Get:114 http://ftpmaster.internal/ubuntu bionic/main ppc64el libmagic1 ppc64el 1:5.32-1 [76.6 kB] Get:115 http://ftpmaster.internal/ubuntu bionic/main ppc64el file ppc64el 1:5.32-1 [22.7 kB] Get:116 http://ftpmaster.internal/ubuntu bionic/main ppc64el gettext-base ppc64el 0.19.8.1-4ubuntu1 [49.5 kB] Get:117 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsigsegv2 ppc64el 2.11-1 [13.3 kB] Get:118 http://ftpmaster.internal/ubuntu bionic/main ppc64el m4 ppc64el 1.4.18-1 [202 kB] Get:119 http://ftpmaster.internal/ubuntu bionic/main ppc64el autoconf all 2.69-11 [322 kB] Get:120 http://ftpmaster.internal/ubuntu bionic/main ppc64el autotools-dev all 20161112.1+nmu1 [40.2 kB] Get:121 http://ftpmaster.internal/ubuntu bionic/main ppc64el automake all 1:1.15.1-3ubuntu1 [509 kB] Get:122 http://ftpmaster.internal/ubuntu bionic/main ppc64el autopoint all 0.19.8.1-4ubuntu1 [412 kB] Get:123 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtool all 2.4.6-2 [194 kB] Get:124 http://ftpmaster.internal/ubuntu bionic/main ppc64el dh-autoreconf all 14 [15.5 kB] Get:125 http://ftpmaster.internal/ubuntu bionic/main ppc64el libarchive-zip-perl all 1.59-1 [84.0 kB] Get:126 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libfile-stripnondeterminism-perl all 0.040-1 [13.9 kB] Get:127 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtimedate-perl all 2.3000-2 [37.5 kB] Get:128 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el dh-strip-nondeterminism all 0.040-1 [5196 B] Get:129 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcroco3 ppc64el 0.6.12-1 [74.4 kB] Get:130 http://ftpmaster.internal/ubuntu bionic/main ppc64el gettext ppc64el 0.19.8.1-4ubuntu1 [1142 kB] Get:131 http://ftpmaster.internal/ubuntu bionic/main ppc64el intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:132 http://ftpmaster.internal/ubuntu bionic/main ppc64el po-debconf all 1.0.20 [232 kB] Get:133 http://ftpmaster.internal/ubuntu bionic/main ppc64el debhelper all 10.10.5ubuntu1 [876 kB] Get:134 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libdrm-dev ppc64el 2.4.85-1 [189 kB] Get:135 http://ftpmaster.internal/ubuntu bionic/main ppc64el libwayland-egl1-mesa ppc64el 17.2.2-0ubuntu1 [6004 B] Get:136 http://ftpmaster.internal/ubuntu bionic/main ppc64el x11proto-dri2-dev all 2.8-2 [12.6 kB] Get:137 http://ftpmaster.internal/ubuntu bionic/main ppc64el x11proto-gl-dev all 1.4.17-1 [17.9 kB] Get:138 http://ftpmaster.internal/ubuntu bionic/main ppc64el xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:139 http://ftpmaster.internal/ubuntu bionic/main ppc64el x11proto-core-dev all 7.0.31-1 [700 kB] Get:140 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxau-dev ppc64el 1:1.0.8-1 [9358 B] Get:141 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxdmcp-dev ppc64el 1:1.1.2-3 [26.1 kB] Get:142 http://ftpmaster.internal/ubuntu bionic/main ppc64el x11proto-input-dev all 2.3.2-1 [118 kB] Get:143 http://ftpmaster.internal/ubuntu bionic/main ppc64el x11proto-kb-dev all 1.0.7-1 [226 kB] Get:144 http://ftpmaster.internal/ubuntu bionic/main ppc64el xtrans-dev all 1.3.5-1 [70.5 kB] Get:145 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpthread-stubs0-dev ppc64el 0.3-4 [3894 B] Get:146 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb1-dev ppc64el 1.12-1ubuntu1 [83.4 kB] Get:147 http://ftpmaster.internal/ubuntu bionic/main ppc64el libx11-dev ppc64el 2:1.6.4-3 [651 kB] Get:148 http://ftpmaster.internal/ubuntu bionic/main ppc64el x11proto-xext-dev all 7.3.0-1 [212 kB] Get:149 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxext-dev ppc64el 2:1.3.3-1 [86.5 kB] Get:150 http://ftpmaster.internal/ubuntu bionic/main ppc64el x11proto-xf86vidmode-dev all 2.3.1-2 [6116 B] Get:151 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxxf86vm-dev ppc64el 1:1.1.4-1 [14.0 kB] Get:152 http://ftpmaster.internal/ubuntu bionic/main ppc64el x11proto-fixes-dev all 1:5.0-2ubuntu2 [14.2 kB] Get:153 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxfixes-dev ppc64el 1:5.0.3-1 [11.1 kB] Get:154 http://ftpmaster.internal/ubuntu bionic/main ppc64el x11proto-damage-dev all 1:1.2.1-2 [8286 B] Get:155 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxdamage-dev ppc64el 1:1.1.4-3 [5984 B] Get:156 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-glx0-dev ppc64el 1.12-1ubuntu1 [26.7 kB] Get:157 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-dri2-0-dev ppc64el 1.12-1ubuntu1 [8280 B] Get:158 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-dri3-dev ppc64el 1.12-1ubuntu1 [5688 B] Get:159 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-render0-dev ppc64el 1.12-1ubuntu1 [18.4 kB] Get:160 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-randr0-dev ppc64el 1.12-1ubuntu1 [19.0 kB] Get:161 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-shape0-dev ppc64el 1.12-1ubuntu1 [6986 B] Get:162 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-xfixes0-dev ppc64el 1.12-1ubuntu1 [11.3 kB] Get:163 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-sync-dev ppc64el 1.12-1ubuntu1 [10.8 kB] Get:164 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb-present-dev ppc64el 1.12-1ubuntu1 [6784 B] Get:165 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxshmfence-dev ppc64el 1.2-1 [3706 B] Get:166 http://ftpmaster.internal/ubuntu bionic/main ppc64el libx11-xcb-dev ppc64el 2:1.6.4-3 [9598 B] Get:167 http://ftpmaster.internal/ubuntu bionic/main ppc64el libwayland-cursor0 ppc64el 1.14.0-1 [11.2 kB] Get:168 http://ftpmaster.internal/ubuntu bionic/main ppc64el libwayland-bin ppc64el 1.14.0-1 [23.7 kB] Get:169 http://ftpmaster.internal/ubuntu bionic/main ppc64el libwayland-dev ppc64el 1.14.0-1 [103 kB] Get:170 http://ftpmaster.internal/ubuntu bionic/main ppc64el libegl1-mesa-dev ppc64el 17.2.2-0ubuntu1 [19.9 kB] Get:171 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgles2-mesa ppc64el 17.2.2-0ubuntu1 [13.9 kB] Get:172 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgles2-mesa-dev ppc64el 17.2.2-0ubuntu1 [40.3 kB] Get:173 http://ftpmaster.internal/ubuntu bionic/main ppc64el libglu1-mesa ppc64el 9.0.0-2.1build1 [225 kB] Get:174 http://ftpmaster.internal/ubuntu bionic/main ppc64el mesa-common-dev ppc64el 17.2.2-0ubuntu1 [512 kB] Get:175 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgl1-mesa-dev ppc64el 17.2.2-0ubuntu1 [4430 B] Get:176 http://ftpmaster.internal/ubuntu bionic/main ppc64el libglu1-mesa-dev ppc64el 9.0.0-2.1build1 [270 kB] Get:177 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libqt5concurrent5 ppc64el 5.9.2+dfsg-4ubuntu5 [30.6 kB] Get:178 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libqt5xml5 ppc64el 5.9.2+dfsg-4ubuntu5 [93.3 kB] Get:179 http://ftpmaster.internal/ubuntu bionic-proposed/universe ppc64el libqt5designer5 ppc64el 5.9.2-3ubuntu1 [2700 kB] Get:180 http://ftpmaster.internal/ubuntu bionic-proposed/universe ppc64el libqt5designercomponents5 ppc64el 5.9.2-3ubuntu1 [648 kB] Get:181 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libqt5sql5 ppc64el 5.9.2+dfsg-4ubuntu5 [107 kB] Get:182 http://ftpmaster.internal/ubuntu bionic-proposed/universe ppc64el libqt5help5 ppc64el 5.9.2-3ubuntu1 [126 kB] Get:183 http://ftpmaster.internal/ubuntu bionic-proposed/universe ppc64el libqt5quickwidgets5 ppc64el 5.9.2-3ubuntu1 [35.0 kB] Get:184 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libqt5test5 ppc64el 5.9.2+dfsg-4ubuntu5 [105 kB] Get:185 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el qt5-qmake-bin ppc64el 5.9.2+dfsg-4ubuntu5 [931 kB] Get:186 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el qtchooser ppc64el 64-ga1b6736-4 [29.1 kB] Get:187 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el qt5-qmake ppc64el 5.9.2+dfsg-4ubuntu5 [179 kB] Get:188 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el qtbase5-dev-tools ppc64el 5.9.2+dfsg-4ubuntu5 [718 kB] Get:189 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el qtbase5-dev ppc64el 5.9.2+dfsg-4ubuntu5 [938 kB] Get:190 http://ftpmaster.internal/ubuntu bionic-proposed/universe ppc64el qttools5-dev-tools ppc64el 5.9.2-3ubuntu1 [2018 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 79.4 MB in 2s (34.7 MB/s) (Reading database ... 12543 files and directories currently installed.) Removing pkg-create-dbgsym (0.73) ... Selecting previously unselected package libxau6:ppc64el. (Reading database ... 12534 files and directories currently installed.) Preparing to unpack .../000-libxau6_1%3a1.0.8-1_ppc64el.deb ... Unpacking libxau6:ppc64el (1:1.0.8-1) ... Selecting previously unselected package libbsd0:ppc64el. Preparing to unpack .../001-libbsd0_0.8.6-2_ppc64el.deb ... Unpacking libbsd0:ppc64el (0.8.6-2) ... Selecting previously unselected package libxdmcp6:ppc64el. Preparing to unpack .../002-libxdmcp6_1%3a1.1.2-3_ppc64el.deb ... Unpacking libxdmcp6:ppc64el (1:1.1.2-3) ... Selecting previously unselected package libxcb1:ppc64el. Preparing to unpack .../003-libxcb1_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb1:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../004-libx11-data_2%3a1.6.4-3_all.deb ... Unpacking libx11-data (2:1.6.4-3) ... Selecting previously unselected package libx11-6:ppc64el. Preparing to unpack .../005-libx11-6_2%3a1.6.4-3_ppc64el.deb ... Unpacking libx11-6:ppc64el (2:1.6.4-3) ... Selecting previously unselected package libxext6:ppc64el. Preparing to unpack .../006-libxext6_2%3a1.3.3-1_ppc64el.deb ... Unpacking libxext6:ppc64el (2:1.3.3-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.22.3-9_ppc64el.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../008-bsdmainutils_9.0.12+nmu1ubuntu1_ppc64el.deb ... Unpacking bsdmainutils (9.0.12+nmu1ubuntu1) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../009-libpipeline1_1.4.2-1_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.4.2-1) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.7.6.1-2_ppc64el.deb ... Unpacking man-db (2.7.6.1-2) ... Selecting previously unselected package libexpat1:ppc64el. Preparing to unpack .../011-libexpat1_2.2.3-1_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.2.3-1) ... Selecting previously unselected package libfreetype6:ppc64el. Preparing to unpack .../012-libfreetype6_2.8-0.2ubuntu2_ppc64el.deb ... Unpacking libfreetype6:ppc64el (2.8-0.2ubuntu2) ... Selecting previously unselected package ucf. Preparing to unpack .../013-ucf_3.0036_all.deb ... Moving old data out of the way Unpacking ucf (3.0036) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../014-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../015-fontconfig-config_2.12.6-0ubuntu1_all.deb ... Unpacking fontconfig-config (2.12.6-0ubuntu1) ... Selecting previously unselected package libfontconfig1:ppc64el. Preparing to unpack .../016-libfontconfig1_2.12.6-0ubuntu1_ppc64el.deb ... Unpacking libfontconfig1:ppc64el (2.12.6-0ubuntu1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../017-fontconfig_2.12.6-0ubuntu1_ppc64el.deb ... Unpacking fontconfig (2.12.6-0ubuntu1) ... Selecting previously unselected package libjpeg-turbo8:ppc64el. Preparing to unpack .../018-libjpeg-turbo8_1.5.2-0ubuntu5_ppc64el.deb ... Unpacking libjpeg-turbo8:ppc64el (1.5.2-0ubuntu5) ... Selecting previously unselected package libmtdev1:ppc64el. Preparing to unpack .../019-libmtdev1_1.1.5-1ubuntu2_ppc64el.deb ... Unpacking libmtdev1:ppc64el (1.1.5-1ubuntu2) ... Selecting previously unselected package libglib2.0-0:ppc64el. Preparing to unpack .../020-libglib2.0-0_2.54.1-1ubuntu1_ppc64el.deb ... Unpacking libglib2.0-0:ppc64el (2.54.1-1ubuntu1) ... Selecting previously unselected package libcap2-bin. Preparing to unpack .../021-libcap2-bin_1%3a2.25-1.1_ppc64el.deb ... Unpacking libcap2-bin (1:2.25-1.1) ... Selecting previously unselected package libgstreamer1.0-0:ppc64el. Preparing to unpack .../022-libgstreamer1.0-0_1.12.3-1_ppc64el.deb ... Unpacking libgstreamer1.0-0:ppc64el (1.12.3-1) ... Selecting previously unselected package liborc-0.4-0:ppc64el. Preparing to unpack .../023-liborc-0.4-0_1%3a0.4.27-1_ppc64el.deb ... Unpacking liborc-0.4-0:ppc64el (1:0.4.27-1) ... Selecting previously unselected package iso-codes. Preparing to unpack .../024-iso-codes_3.76-1_all.deb ... Unpacking iso-codes (3.76-1) ... Selecting previously unselected package libgstreamer-plugins-base1.0-0:ppc64el. Preparing to unpack .../025-libgstreamer-plugins-base1.0-0_1.12.3-1_ppc64el.deb ... Unpacking libgstreamer-plugins-base1.0-0:ppc64el (1.12.3-1) ... Selecting previously unselected package libhyphen0:ppc64el. Preparing to unpack .../026-libhyphen0_2.8.8-5_ppc64el.deb ... Unpacking libhyphen0:ppc64el (2.8.8-5) ... Selecting previously unselected package libicu59:ppc64el. Preparing to unpack .../027-libicu59_59.1-3ubuntu1_ppc64el.deb ... Unpacking libicu59:ppc64el (59.1-3ubuntu1) ... Selecting previously unselected package libjpeg8:ppc64el. Preparing to unpack .../028-libjpeg8_8c-2ubuntu8_ppc64el.deb ... Unpacking libjpeg8:ppc64el (8c-2ubuntu8) ... Selecting previously unselected package libdouble-conversion1:ppc64el. Preparing to unpack .../029-libdouble-conversion1_2.0.1-4ubuntu1_ppc64el.deb ... Unpacking libdouble-conversion1:ppc64el (2.0.1-4ubuntu1) ... Selecting previously unselected package libqt5core5a:ppc64el. Preparing to unpack .../030-libqt5core5a_5.9.2+dfsg-4ubuntu5_ppc64el.deb ... Unpacking libqt5core5a:ppc64el (5.9.2+dfsg-4ubuntu5) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../031-libdrm-common_2.4.85-1_all.deb ... Unpacking libdrm-common (2.4.85-1) ... Selecting previously unselected package libdrm2:ppc64el. Preparing to unpack .../032-libdrm2_2.4.85-1_ppc64el.deb ... Unpacking libdrm2:ppc64el (2.4.85-1) ... Selecting previously unselected package libwayland-client0:ppc64el. Preparing to unpack .../033-libwayland-client0_1.14.0-1_ppc64el.deb ... Unpacking libwayland-client0:ppc64el (1.14.0-1) ... Selecting previously unselected package libwayland-server0:ppc64el. Preparing to unpack .../034-libwayland-server0_1.14.0-1_ppc64el.deb ... Unpacking libwayland-server0:ppc64el (1.14.0-1) ... Selecting previously unselected package libgbm1:ppc64el. Preparing to unpack .../035-libgbm1_17.2.2-0ubuntu1_ppc64el.deb ... Unpacking libgbm1:ppc64el (17.2.2-0ubuntu1) ... Selecting previously unselected package libboost-system1.65.1:ppc64el. Preparing to unpack .../036-libboost-system1.65.1_1.65.1+dfsg-0ubuntu2_ppc64el.deb ... Unpacking libboost-system1.65.1:ppc64el (1.65.1+dfsg-0ubuntu2) ... Selecting previously unselected package libcapnp-0.6.1. Preparing to unpack .../037-libcapnp-0.6.1_0.6.1-1_ppc64el.deb ... Unpacking libcapnp-0.6.1 (0.6.1-1) ... Selecting previously unselected package libboost-filesystem1.65.1:ppc64el. Preparing to unpack .../038-libboost-filesystem1.65.1_1.65.1+dfsg-0ubuntu2_ppc64el.deb ... Unpacking libboost-filesystem1.65.1:ppc64el (1.65.1+dfsg-0ubuntu2) ... Selecting previously unselected package libmircore1:ppc64el. Preparing to unpack .../039-libmircore1_0.28.1+18.04.20171030-0ubuntu1_ppc64el.deb ... Unpacking libmircore1:ppc64el (0.28.1+18.04.20171030-0ubuntu1) ... Selecting previously unselected package libmircommon7:ppc64el. Preparing to unpack .../040-libmircommon7_0.28.1+18.04.20171030-0ubuntu1_ppc64el.deb ... Unpacking libmircommon7:ppc64el (0.28.1+18.04.20171030-0ubuntu1) ... Selecting previously unselected package libprotobuf-lite10:ppc64el. Preparing to unpack .../041-libprotobuf-lite10_3.0.0-9ubuntu5_ppc64el.deb ... Unpacking libprotobuf-lite10:ppc64el (3.0.0-9ubuntu5) ... Selecting previously unselected package libmirprotobuf3:ppc64el. Preparing to unpack .../042-libmirprotobuf3_0.28.1+18.04.20171030-0ubuntu1_ppc64el.deb ... Unpacking libmirprotobuf3:ppc64el (0.28.1+18.04.20171030-0ubuntu1) ... Selecting previously unselected package xkb-data. Preparing to unpack .../043-xkb-data_2.19-1.1ubuntu1_all.deb ... Unpacking xkb-data (2.19-1.1ubuntu1) ... Selecting previously unselected package libxkbcommon0:ppc64el. Preparing to unpack .../044-libxkbcommon0_0.7.1-2_ppc64el.deb ... Unpacking libxkbcommon0:ppc64el (0.7.1-2) ... Selecting previously unselected package libmirclient9:ppc64el. Preparing to unpack .../045-libmirclient9_0.28.1+18.04.20171030-0ubuntu1_ppc64el.deb ... Unpacking libmirclient9:ppc64el (0.28.1+18.04.20171030-0ubuntu1) ... Selecting previously unselected package libx11-xcb1:ppc64el. Preparing to unpack .../046-libx11-xcb1_2%3a1.6.4-3_ppc64el.deb ... Unpacking libx11-xcb1:ppc64el (2:1.6.4-3) ... Selecting previously unselected package libxcb-dri2-0:ppc64el. Preparing to unpack .../047-libxcb-dri2-0_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-dri2-0:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-dri3-0:ppc64el. Preparing to unpack .../048-libxcb-dri3-0_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-dri3-0:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-present0:ppc64el. Preparing to unpack .../049-libxcb-present0_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-present0:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-sync1:ppc64el. Preparing to unpack .../050-libxcb-sync1_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-sync1:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-xfixes0:ppc64el. Preparing to unpack .../051-libxcb-xfixes0_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-xfixes0:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxshmfence1:ppc64el. Preparing to unpack .../052-libxshmfence1_1.2-1_ppc64el.deb ... Unpacking libxshmfence1:ppc64el (1.2-1) ... Selecting previously unselected package libdrm-amdgpu1:ppc64el. Preparing to unpack .../053-libdrm-amdgpu1_2.4.85-1_ppc64el.deb ... Unpacking libdrm-amdgpu1:ppc64el (2.4.85-1) ... Selecting previously unselected package libdrm-nouveau2:ppc64el. Preparing to unpack .../054-libdrm-nouveau2_2.4.85-1_ppc64el.deb ... Unpacking libdrm-nouveau2:ppc64el (2.4.85-1) ... Selecting previously unselected package libdrm-radeon1:ppc64el. Preparing to unpack .../055-libdrm-radeon1_2.4.85-1_ppc64el.deb ... Unpacking libdrm-radeon1:ppc64el (2.4.85-1) ... Selecting previously unselected package libelf1:ppc64el. Preparing to unpack .../056-libelf1_0.170-0.1_ppc64el.deb ... Unpacking libelf1:ppc64el (0.170-0.1) ... Selecting previously unselected package libglapi-mesa:ppc64el. Preparing to unpack .../057-libglapi-mesa_17.2.2-0ubuntu1_ppc64el.deb ... Unpacking libglapi-mesa:ppc64el (17.2.2-0ubuntu1) ... Selecting previously unselected package libedit2:ppc64el. Preparing to unpack .../058-libedit2_3.1-20170329-1_ppc64el.deb ... Unpacking libedit2:ppc64el (3.1-20170329-1) ... Selecting previously unselected package libllvm5.0:ppc64el. Preparing to unpack .../059-libllvm5.0_1%3a5.0-4_ppc64el.deb ... Unpacking libllvm5.0:ppc64el (1:5.0-4) ... Selecting previously unselected package libsensors4:ppc64el. Preparing to unpack .../060-libsensors4_1%3a3.4.0-4_ppc64el.deb ... Unpacking libsensors4:ppc64el (1:3.4.0-4) ... Selecting previously unselected package libgl1-mesa-dri:ppc64el. Preparing to unpack .../061-libgl1-mesa-dri_17.2.2-0ubuntu1_ppc64el.deb ... Unpacking libgl1-mesa-dri:ppc64el (17.2.2-0ubuntu1) ... Selecting previously unselected package libegl1-mesa:ppc64el. Preparing to unpack .../062-libegl1-mesa_17.2.2-0ubuntu1_ppc64el.deb ... Unpacking libegl1-mesa:ppc64el (17.2.2-0ubuntu1) ... Selecting previously unselected package libxcb-glx0:ppc64el. Preparing to unpack .../063-libxcb-glx0_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-glx0:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxdamage1:ppc64el. Preparing to unpack .../064-libxdamage1_1%3a1.1.4-3_ppc64el.deb ... Unpacking libxdamage1:ppc64el (1:1.1.4-3) ... Selecting previously unselected package libxfixes3:ppc64el. Preparing to unpack .../065-libxfixes3_1%3a5.0.3-1_ppc64el.deb ... Unpacking libxfixes3:ppc64el (1:5.0.3-1) ... Selecting previously unselected package libxxf86vm1:ppc64el. Preparing to unpack .../066-libxxf86vm1_1%3a1.1.4-1_ppc64el.deb ... Unpacking libxxf86vm1:ppc64el (1:1.1.4-1) ... Selecting previously unselected package libgl1-mesa-glx:ppc64el. Preparing to unpack .../067-libgl1-mesa-glx_17.2.2-0ubuntu1_ppc64el.deb ... Unpacking libgl1-mesa-glx:ppc64el (17.2.2-0ubuntu1) ... Selecting previously unselected package libgraphite2-3:ppc64el. Preparing to unpack .../068-libgraphite2-3_1.3.10-6_ppc64el.deb ... Unpacking libgraphite2-3:ppc64el (1.3.10-6) ... Selecting previously unselected package libharfbuzz0b:ppc64el. Preparing to unpack .../069-libharfbuzz0b_1.6.2-1_ppc64el.deb ... Unpacking libharfbuzz0b:ppc64el (1.6.2-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../070-x11-common_1%3a7.7+19ubuntu3_all.deb ... Unpacking x11-common (1:7.7+19ubuntu3) ... Selecting previously unselected package libice6:ppc64el. Preparing to unpack .../071-libice6_2%3a1.0.9-2_ppc64el.deb ... Unpacking libice6:ppc64el (2:1.0.9-2) ... Selecting previously unselected package libevdev2:ppc64el. Preparing to unpack .../072-libevdev2_1.5.7+dfsg-1_ppc64el.deb ... Unpacking libevdev2:ppc64el (1.5.7+dfsg-1) ... Selecting previously unselected package libgudev-1.0-0:ppc64el. Preparing to unpack .../073-libgudev-1.0-0_1%3a232-1_ppc64el.deb ... Unpacking libgudev-1.0-0:ppc64el (1:232-1) ... Selecting previously unselected package libwacom-common. Preparing to unpack .../074-libwacom-common_0.26-1_all.deb ... Unpacking libwacom-common (0.26-1) ... Selecting previously unselected package libwacom2:ppc64el. Preparing to unpack .../075-libwacom2_0.26-1_ppc64el.deb ... Unpacking libwacom2:ppc64el (0.26-1) ... Selecting previously unselected package libinput-bin. Preparing to unpack .../076-libinput-bin_1.8.2-1ubuntu2_ppc64el.deb ... Unpacking libinput-bin (1.8.2-1ubuntu2) ... Selecting previously unselected package libinput10:ppc64el. Preparing to unpack .../077-libinput10_1.8.2-1ubuntu2_ppc64el.deb ... Unpacking libinput10:ppc64el (1.8.2-1ubuntu2) ... Selecting previously unselected package libdbus-1-3:ppc64el. Preparing to unpack .../078-libdbus-1-3_1.12.0-1ubuntu1_ppc64el.deb ... Unpacking libdbus-1-3:ppc64el (1.12.0-1ubuntu1) ... Selecting previously unselected package libqt5dbus5:ppc64el. Preparing to unpack .../079-libqt5dbus5_5.9.2+dfsg-4ubuntu5_ppc64el.deb ... Unpacking libqt5dbus5:ppc64el (5.9.2+dfsg-4ubuntu5) ... Selecting previously unselected package libqt5network5:ppc64el. Preparing to unpack .../080-libqt5network5_5.9.2+dfsg-4ubuntu5_ppc64el.deb ... Unpacking libqt5network5:ppc64el (5.9.2+dfsg-4ubuntu5) ... Selecting previously unselected package libsm6:ppc64el. Preparing to unpack .../081-libsm6_2%3a1.2.2-1_ppc64el.deb ... Unpacking libsm6:ppc64el (2:1.2.2-1) ... Selecting previously unselected package libxcb-icccm4:ppc64el. Preparing to unpack .../082-libxcb-icccm4_0.4.1-1ubuntu1_ppc64el.deb ... Unpacking libxcb-icccm4:ppc64el (0.4.1-1ubuntu1) ... Selecting previously unselected package libxcb-shm0:ppc64el. Preparing to unpack .../083-libxcb-shm0_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-shm0:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-util1:ppc64el. Preparing to unpack .../084-libxcb-util1_0.4.0-0ubuntu3_ppc64el.deb ... Unpacking libxcb-util1:ppc64el (0.4.0-0ubuntu3) ... Selecting previously unselected package libxcb-image0:ppc64el. Preparing to unpack .../085-libxcb-image0_0.4.0-1build1_ppc64el.deb ... Unpacking libxcb-image0:ppc64el (0.4.0-1build1) ... Selecting previously unselected package libxcb-keysyms1:ppc64el. Preparing to unpack .../086-libxcb-keysyms1_0.4.0-1_ppc64el.deb ... Unpacking libxcb-keysyms1:ppc64el (0.4.0-1) ... Selecting previously unselected package libxcb-randr0:ppc64el. Preparing to unpack .../087-libxcb-randr0_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-randr0:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-render0:ppc64el. Preparing to unpack .../088-libxcb-render0_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-render0:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-render-util0:ppc64el. Preparing to unpack .../089-libxcb-render-util0_0.3.9-1_ppc64el.deb ... Unpacking libxcb-render-util0:ppc64el (0.3.9-1) ... Selecting previously unselected package libxcb-shape0:ppc64el. Preparing to unpack .../090-libxcb-shape0_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-shape0:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-xinerama0:ppc64el. Preparing to unpack .../091-libxcb-xinerama0_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-xinerama0:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-xkb1:ppc64el. Preparing to unpack .../092-libxcb-xkb1_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-xkb1:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxi6:ppc64el. Preparing to unpack .../093-libxi6_2%3a1.7.9-1_ppc64el.deb ... Unpacking libxi6:ppc64el (2:1.7.9-1) ... Selecting previously unselected package libxkbcommon-x11-0:ppc64el. Preparing to unpack .../094-libxkbcommon-x11-0_0.7.1-2_ppc64el.deb ... Unpacking libxkbcommon-x11-0:ppc64el (0.7.1-2) ... Selecting previously unselected package libqt5gui5:ppc64el. Preparing to unpack .../095-libqt5gui5_5.9.2+dfsg-4ubuntu5_ppc64el.deb ... Unpacking libqt5gui5:ppc64el (5.9.2+dfsg-4ubuntu5) ... Selecting previously unselected package libqt5positioning5:ppc64el. Preparing to unpack .../096-libqt5positioning5_5.9.2+dfsg-2build1_ppc64el.deb ... Unpacking libqt5positioning5:ppc64el (5.9.2+dfsg-2build1) ... Selecting previously unselected package libavahi-common-data:ppc64el. Preparing to unpack .../097-libavahi-common-data_0.6.32-1ubuntu1_ppc64el.deb ... Unpacking libavahi-common-data:ppc64el (0.6.32-1ubuntu1) ... Selecting previously unselected package libavahi-common3:ppc64el. Preparing to unpack .../098-libavahi-common3_0.6.32-1ubuntu1_ppc64el.deb ... Unpacking libavahi-common3:ppc64el (0.6.32-1ubuntu1) ... Selecting previously unselected package libavahi-client3:ppc64el. Preparing to unpack .../099-libavahi-client3_0.6.32-1ubuntu1_ppc64el.deb ... Unpacking libavahi-client3:ppc64el (0.6.32-1ubuntu1) ... Selecting previously unselected package libcups2:ppc64el. Preparing to unpack .../100-libcups2_2.2.6-1_ppc64el.deb ... Unpacking libcups2:ppc64el (2.2.6-1) ... Selecting previously unselected package libqt5widgets5:ppc64el. Preparing to unpack .../101-libqt5widgets5_5.9.2+dfsg-4ubuntu5_ppc64el.deb ... Unpacking libqt5widgets5:ppc64el (5.9.2+dfsg-4ubuntu5) ... Selecting previously unselected package libqt5printsupport5:ppc64el. Preparing to unpack .../102-libqt5printsupport5_5.9.2+dfsg-4ubuntu5_ppc64el.deb ... Unpacking libqt5printsupport5:ppc64el (5.9.2+dfsg-4ubuntu5) ... Selecting previously unselected package libqt5qml5:ppc64el. Preparing to unpack .../103-libqt5qml5_5.9.2-3ubuntu1_ppc64el.deb ... Unpacking libqt5qml5:ppc64el (5.9.2-3ubuntu1) ... Selecting previously unselected package libqt5quick5:ppc64el. Preparing to unpack .../104-libqt5quick5_5.9.2-3ubuntu1_ppc64el.deb ... Unpacking libqt5quick5:ppc64el (5.9.2-3ubuntu1) ... Selecting previously unselected package libqt5sensors5:ppc64el. Preparing to unpack .../105-libqt5sensors5_5.9.2-2build1_ppc64el.deb ... Unpacking libqt5sensors5:ppc64el (5.9.2-2build1) ... Selecting previously unselected package libqt5webchannel5:ppc64el. Preparing to unpack .../106-libqt5webchannel5_5.9.2-2_ppc64el.deb ... Unpacking libqt5webchannel5:ppc64el (5.9.2-2) ... Selecting previously unselected package libwebp6:ppc64el. Preparing to unpack .../107-libwebp6_0.6.0-3_ppc64el.deb ... Unpacking libwebp6:ppc64el (0.6.0-3) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../108-libxml2_2.9.4+dfsg1-5ubuntu1_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.4+dfsg1-5ubuntu1) ... Selecting previously unselected package libxslt1.1:ppc64el. Preparing to unpack .../109-libxslt1.1_1.1.29-2.1ubuntu1_ppc64el.deb ... Unpacking libxslt1.1:ppc64el (1.1.29-2.1ubuntu1) ... Selecting previously unselected package libqt5webkit5:ppc64el. Preparing to unpack .../110-libqt5webkit5_5.212.0~alpha2-5_ppc64el.deb ... Unpacking libqt5webkit5:ppc64el (5.212.0~alpha2-5) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../111-libmagic-mgc_1%3a5.32-1_ppc64el.deb ... Unpacking libmagic-mgc (1:5.32-1) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../112-libmagic1_1%3a5.32-1_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.32-1) ... Selecting previously unselected package file. Preparing to unpack .../113-file_1%3a5.32-1_ppc64el.deb ... Unpacking file (1:5.32-1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../114-gettext-base_0.19.8.1-4ubuntu1_ppc64el.deb ... Unpacking gettext-base (0.19.8.1-4ubuntu1) ... Selecting previously unselected package libsigsegv2:ppc64el. Preparing to unpack .../115-libsigsegv2_2.11-1_ppc64el.deb ... Unpacking libsigsegv2:ppc64el (2.11-1) ... Selecting previously unselected package m4. Preparing to unpack .../116-m4_1.4.18-1_ppc64el.deb ... Unpacking m4 (1.4.18-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../117-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../118-autotools-dev_20161112.1+nmu1_all.deb ... Unpacking autotools-dev (20161112.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../119-automake_1%3a1.15.1-3ubuntu1_all.deb ... Unpacking automake (1:1.15.1-3ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../120-autopoint_0.19.8.1-4ubuntu1_all.deb ... Unpacking autopoint (0.19.8.1-4ubuntu1) ... Selecting previously unselected package libtool. Preparing to unpack .../121-libtool_2.4.6-2_all.deb ... Unpacking libtool (2.4.6-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../122-dh-autoreconf_14_all.deb ... Unpacking dh-autoreconf (14) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../123-libarchive-zip-perl_1.59-1_all.deb ... Unpacking libarchive-zip-perl (1.59-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../124-libfile-stripnondeterminism-perl_0.040-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.040-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../125-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../126-dh-strip-nondeterminism_0.040-1_all.deb ... Unpacking dh-strip-nondeterminism (0.040-1) ... Selecting previously unselected package libcroco3:ppc64el. Preparing to unpack .../127-libcroco3_0.6.12-1_ppc64el.deb ... Unpacking libcroco3:ppc64el (0.6.12-1) ... Selecting previously unselected package gettext. Preparing to unpack .../128-gettext_0.19.8.1-4ubuntu1_ppc64el.deb ... Unpacking gettext (0.19.8.1-4ubuntu1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../129-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../130-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../131-debhelper_10.10.5ubuntu1_all.deb ... Unpacking debhelper (10.10.5ubuntu1) ... Selecting previously unselected package libdrm-dev:ppc64el. Preparing to unpack .../132-libdrm-dev_2.4.85-1_ppc64el.deb ... Unpacking libdrm-dev:ppc64el (2.4.85-1) ... Selecting previously unselected package libwayland-egl1-mesa:ppc64el. Preparing to unpack .../133-libwayland-egl1-mesa_17.2.2-0ubuntu1_ppc64el.deb ... Unpacking libwayland-egl1-mesa:ppc64el (17.2.2-0ubuntu1) ... Selecting previously unselected package x11proto-dri2-dev. Preparing to unpack .../134-x11proto-dri2-dev_2.8-2_all.deb ... Unpacking x11proto-dri2-dev (2.8-2) ... Selecting previously unselected package x11proto-gl-dev. Preparing to unpack .../135-x11proto-gl-dev_1.4.17-1_all.deb ... Unpacking x11proto-gl-dev (1.4.17-1) ... Selecting previously unselected package xorg-sgml-doctools. Preparing to unpack .../136-xorg-sgml-doctools_1%3a1.11-1_all.deb ... Unpacking xorg-sgml-doctools (1:1.11-1) ... Selecting previously unselected package x11proto-core-dev. Preparing to unpack .../137-x11proto-core-dev_7.0.31-1_all.deb ... Unpacking x11proto-core-dev (7.0.31-1) ... Selecting previously unselected package libxau-dev:ppc64el. Preparing to unpack .../138-libxau-dev_1%3a1.0.8-1_ppc64el.deb ... Unpacking libxau-dev:ppc64el (1:1.0.8-1) ... Selecting previously unselected package libxdmcp-dev:ppc64el. Preparing to unpack .../139-libxdmcp-dev_1%3a1.1.2-3_ppc64el.deb ... Unpacking libxdmcp-dev:ppc64el (1:1.1.2-3) ... Selecting previously unselected package x11proto-input-dev. Preparing to unpack .../140-x11proto-input-dev_2.3.2-1_all.deb ... Unpacking x11proto-input-dev (2.3.2-1) ... Selecting previously unselected package x11proto-kb-dev. Preparing to unpack .../141-x11proto-kb-dev_1.0.7-1_all.deb ... Unpacking x11proto-kb-dev (1.0.7-1) ... Selecting previously unselected package xtrans-dev. Preparing to unpack .../142-xtrans-dev_1.3.5-1_all.deb ... Unpacking xtrans-dev (1.3.5-1) ... Selecting previously unselected package libpthread-stubs0-dev:ppc64el. Preparing to unpack .../143-libpthread-stubs0-dev_0.3-4_ppc64el.deb ... Unpacking libpthread-stubs0-dev:ppc64el (0.3-4) ... Selecting previously unselected package libxcb1-dev:ppc64el. Preparing to unpack .../144-libxcb1-dev_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb1-dev:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libx11-dev:ppc64el. Preparing to unpack .../145-libx11-dev_2%3a1.6.4-3_ppc64el.deb ... Unpacking libx11-dev:ppc64el (2:1.6.4-3) ... Selecting previously unselected package x11proto-xext-dev. Preparing to unpack .../146-x11proto-xext-dev_7.3.0-1_all.deb ... Unpacking x11proto-xext-dev (7.3.0-1) ... Selecting previously unselected package libxext-dev:ppc64el. Preparing to unpack .../147-libxext-dev_2%3a1.3.3-1_ppc64el.deb ... Unpacking libxext-dev:ppc64el (2:1.3.3-1) ... Selecting previously unselected package x11proto-xf86vidmode-dev. Preparing to unpack .../148-x11proto-xf86vidmode-dev_2.3.1-2_all.deb ... Unpacking x11proto-xf86vidmode-dev (2.3.1-2) ... Selecting previously unselected package libxxf86vm-dev:ppc64el. Preparing to unpack .../149-libxxf86vm-dev_1%3a1.1.4-1_ppc64el.deb ... Unpacking libxxf86vm-dev:ppc64el (1:1.1.4-1) ... Selecting previously unselected package x11proto-fixes-dev. Preparing to unpack .../150-x11proto-fixes-dev_1%3a5.0-2ubuntu2_all.deb ... Unpacking x11proto-fixes-dev (1:5.0-2ubuntu2) ... Selecting previously unselected package libxfixes-dev:ppc64el. Preparing to unpack .../151-libxfixes-dev_1%3a5.0.3-1_ppc64el.deb ... Unpacking libxfixes-dev:ppc64el (1:5.0.3-1) ... Selecting previously unselected package x11proto-damage-dev. Preparing to unpack .../152-x11proto-damage-dev_1%3a1.2.1-2_all.deb ... Unpacking x11proto-damage-dev (1:1.2.1-2) ... Selecting previously unselected package libxdamage-dev:ppc64el. Preparing to unpack .../153-libxdamage-dev_1%3a1.1.4-3_ppc64el.deb ... Unpacking libxdamage-dev:ppc64el (1:1.1.4-3) ... Selecting previously unselected package libxcb-glx0-dev:ppc64el. Preparing to unpack .../154-libxcb-glx0-dev_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-glx0-dev:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-dri2-0-dev:ppc64el. Preparing to unpack .../155-libxcb-dri2-0-dev_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-dri2-0-dev:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-dri3-dev:ppc64el. Preparing to unpack .../156-libxcb-dri3-dev_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-dri3-dev:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-render0-dev:ppc64el. Preparing to unpack .../157-libxcb-render0-dev_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-render0-dev:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-randr0-dev:ppc64el. Preparing to unpack .../158-libxcb-randr0-dev_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-randr0-dev:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-shape0-dev:ppc64el. Preparing to unpack .../159-libxcb-shape0-dev_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-shape0-dev:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-xfixes0-dev:ppc64el. Preparing to unpack .../160-libxcb-xfixes0-dev_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-xfixes0-dev:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-sync-dev:ppc64el. Preparing to unpack .../161-libxcb-sync-dev_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-sync-dev:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-present-dev:ppc64el. Preparing to unpack .../162-libxcb-present-dev_1.12-1ubuntu1_ppc64el.deb ... Unpacking libxcb-present-dev:ppc64el (1.12-1ubuntu1) ... Selecting previously unselected package libxshmfence-dev:ppc64el. Preparing to unpack .../163-libxshmfence-dev_1.2-1_ppc64el.deb ... Unpacking libxshmfence-dev:ppc64el (1.2-1) ... Selecting previously unselected package libx11-xcb-dev:ppc64el. Preparing to unpack .../164-libx11-xcb-dev_2%3a1.6.4-3_ppc64el.deb ... Unpacking libx11-xcb-dev:ppc64el (2:1.6.4-3) ... Selecting previously unselected package libwayland-cursor0:ppc64el. Preparing to unpack .../165-libwayland-cursor0_1.14.0-1_ppc64el.deb ... Unpacking libwayland-cursor0:ppc64el (1.14.0-1) ... Selecting previously unselected package libwayland-bin. Preparing to unpack .../166-libwayland-bin_1.14.0-1_ppc64el.deb ... Unpacking libwayland-bin (1.14.0-1) ... Selecting previously unselected package libwayland-dev:ppc64el. Preparing to unpack .../167-libwayland-dev_1.14.0-1_ppc64el.deb ... Unpacking libwayland-dev:ppc64el (1.14.0-1) ... Selecting previously unselected package libegl1-mesa-dev:ppc64el. Preparing to unpack .../168-libegl1-mesa-dev_17.2.2-0ubuntu1_ppc64el.deb ... Unpacking libegl1-mesa-dev:ppc64el (17.2.2-0ubuntu1) ... Selecting previously unselected package libgles2-mesa:ppc64el. Preparing to unpack .../169-libgles2-mesa_17.2.2-0ubuntu1_ppc64el.deb ... Unpacking libgles2-mesa:ppc64el (17.2.2-0ubuntu1) ... Selecting previously unselected package libgles2-mesa-dev:ppc64el. Preparing to unpack .../170-libgles2-mesa-dev_17.2.2-0ubuntu1_ppc64el.deb ... Unpacking libgles2-mesa-dev:ppc64el (17.2.2-0ubuntu1) ... Selecting previously unselected package libglu1-mesa:ppc64el. Preparing to unpack .../171-libglu1-mesa_9.0.0-2.1build1_ppc64el.deb ... Unpacking libglu1-mesa:ppc64el (9.0.0-2.1build1) ... Selecting previously unselected package mesa-common-dev:ppc64el. Preparing to unpack .../172-mesa-common-dev_17.2.2-0ubuntu1_ppc64el.deb ... Unpacking mesa-common-dev:ppc64el (17.2.2-0ubuntu1) ... Selecting previously unselected package libgl1-mesa-dev:ppc64el. Preparing to unpack .../173-libgl1-mesa-dev_17.2.2-0ubuntu1_ppc64el.deb ... Unpacking libgl1-mesa-dev:ppc64el (17.2.2-0ubuntu1) ... Selecting previously unselected package libglu1-mesa-dev:ppc64el. Preparing to unpack .../174-libglu1-mesa-dev_9.0.0-2.1build1_ppc64el.deb ... Unpacking libglu1-mesa-dev:ppc64el (9.0.0-2.1build1) ... Selecting previously unselected package libqt5concurrent5:ppc64el. Preparing to unpack .../175-libqt5concurrent5_5.9.2+dfsg-4ubuntu5_ppc64el.deb ... Unpacking libqt5concurrent5:ppc64el (5.9.2+dfsg-4ubuntu5) ... Selecting previously unselected package libqt5xml5:ppc64el. Preparing to unpack .../176-libqt5xml5_5.9.2+dfsg-4ubuntu5_ppc64el.deb ... Unpacking libqt5xml5:ppc64el (5.9.2+dfsg-4ubuntu5) ... Selecting previously unselected package libqt5designer5:ppc64el. Preparing to unpack .../177-libqt5designer5_5.9.2-3ubuntu1_ppc64el.deb ... Unpacking libqt5designer5:ppc64el (5.9.2-3ubuntu1) ... Selecting previously unselected package libqt5designercomponents5:ppc64el. Preparing to unpack .../178-libqt5designercomponents5_5.9.2-3ubuntu1_ppc64el.deb ... Unpacking libqt5designercomponents5:ppc64el (5.9.2-3ubuntu1) ... Selecting previously unselected package libqt5sql5:ppc64el. Preparing to unpack .../179-libqt5sql5_5.9.2+dfsg-4ubuntu5_ppc64el.deb ... Unpacking libqt5sql5:ppc64el (5.9.2+dfsg-4ubuntu5) ... Selecting previously unselected package libqt5help5:ppc64el. Preparing to unpack .../180-libqt5help5_5.9.2-3ubuntu1_ppc64el.deb ... Unpacking libqt5help5:ppc64el (5.9.2-3ubuntu1) ... Selecting previously unselected package libqt5quickwidgets5:ppc64el. Preparing to unpack .../181-libqt5quickwidgets5_5.9.2-3ubuntu1_ppc64el.deb ... Unpacking libqt5quickwidgets5:ppc64el (5.9.2-3ubuntu1) ... Selecting previously unselected package libqt5test5:ppc64el. Preparing to unpack .../182-libqt5test5_5.9.2+dfsg-4ubuntu5_ppc64el.deb ... Unpacking libqt5test5:ppc64el (5.9.2+dfsg-4ubuntu5) ... Selecting previously unselected package qt5-qmake-bin. Preparing to unpack .../183-qt5-qmake-bin_5.9.2+dfsg-4ubuntu5_ppc64el.deb ... Unpacking qt5-qmake-bin (5.9.2+dfsg-4ubuntu5) ... Selecting previously unselected package qtchooser. Preparing to unpack .../184-qtchooser_64-ga1b6736-4_ppc64el.deb ... Unpacking qtchooser (64-ga1b6736-4) ... Selecting previously unselected package qt5-qmake:ppc64el. Preparing to unpack .../185-qt5-qmake_5.9.2+dfsg-4ubuntu5_ppc64el.deb ... Unpacking qt5-qmake:ppc64el (5.9.2+dfsg-4ubuntu5) ... Selecting previously unselected package qtbase5-dev-tools. Preparing to unpack .../186-qtbase5-dev-tools_5.9.2+dfsg-4ubuntu5_ppc64el.deb ... Unpacking qtbase5-dev-tools (5.9.2+dfsg-4ubuntu5) ... Selecting previously unselected package qtbase5-dev:ppc64el. Preparing to unpack .../187-qtbase5-dev_5.9.2+dfsg-4ubuntu5_ppc64el.deb ... Unpacking qtbase5-dev:ppc64el (5.9.2+dfsg-4ubuntu5) ... Selecting previously unselected package qttools5-dev-tools. Preparing to unpack .../188-qttools5-dev-tools_5.9.2-3ubuntu1_ppc64el.deb ... Unpacking qttools5-dev-tools (5.9.2-3ubuntu1) ... Selecting previously unselected package sbuild-build-depends-clustalx-dummy. Preparing to unpack .../189-sbuild-build-depends-clustalx-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-clustalx-dummy (0.invalid.0) ... Setting up libedit2:ppc64el (3.1-20170329-1) ... Setting up x11proto-dri2-dev (2.8-2) ... Setting up libexpat1:ppc64el (2.2.3-1) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up libwacom-common (0.26-1) ... Setting up libdouble-conversion1:ppc64el (2.0.1-4ubuntu1) ... Setting up qt5-qmake-bin (5.9.2+dfsg-4ubuntu5) ... Setting up libevdev2:ppc64el (1.5.7+dfsg-1) ... Setting up iso-codes (3.76-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:ppc64el (2.11-1) ... Setting up libpthread-stubs0-dev:ppc64el (0.3-4) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libcap2-bin (1:2.25-1.1) ... Setting up libicu59:ppc64el (59.1-3ubuntu1) ... Setting up libelf1:ppc64el (0.170-0.1) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:ppc64el (2.54.1-1ubuntu1) ... No schema files found: doing nothing. Setting up libxshmfence1:ppc64el (1.2-1) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up libwayland-client0:ppc64el (1.14.0-1) ... Setting up xkb-data (2.19-1.1ubuntu1) ... Setting up qtchooser (64-ga1b6736-4) ... Setting up libllvm5.0:ppc64el (1:5.0-4) ... Setting up x11proto-xf86vidmode-dev (2.3.1-2) ... Setting up gettext-base (0.19.8.1-4ubuntu1) ... Setting up libjpeg-turbo8:ppc64el (1.5.2-0ubuntu5) ... Setting up libpipeline1:ppc64el (1.4.2-1) ... Setting up x11proto-kb-dev (1.0.7-1) ... Setting up libglapi-mesa:ppc64el (17.2.2-0ubuntu1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:ppc64el (0.8.6-2) ... Setting up ucf (3.0036) ... Setting up libxml2:ppc64el (2.9.4+dfsg1-5ubuntu1) ... Setting up libfreetype6:ppc64el (2.8-0.2ubuntu2) ... Setting up libmagic-mgc (1:5.32-1) ... Setting up libmagic1:ppc64el (1:5.32-1) ... Setting up libdrm-common (2.4.85-1) ... Setting up libgraphite2-3:ppc64el (1.3.10-6) ... Setting up libcroco3:ppc64el (0.6.12-1) ... Setting up libxslt1.1:ppc64el (1.1.29-2.1ubuntu1) ... Setting up libboost-system1.65.1:ppc64el (1.65.1+dfsg-0ubuntu2) ... Setting up libhyphen0:ppc64el (2.8.8-5) ... Setting up libx11-xcb1:ppc64el (2:1.6.4-3) ... Setting up xtrans-dev (1.3.5-1) ... Setting up qt5-qmake:ppc64el (5.9.2+dfsg-4ubuntu5) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up autotools-dev (20161112.1+nmu1) ... Setting up x11proto-gl-dev (1.4.17-1) ... Processing triggers for systemd (235-2ubuntu1) ... Setting up libmtdev1:ppc64el (1.1.5-1ubuntu2) ... Setting up libcapnp-0.6.1 (0.6.1-1) ... Setting up libsensors4:ppc64el (1:3.4.0-4) ... Setting up libxkbcommon0:ppc64el (0.7.1-2) ... Setting up libgudev-1.0-0:ppc64el (1:232-1) ... Setting up liborc-0.4-0:ppc64el (1:0.4.27-1) ... Setting up libxdmcp6:ppc64el (1:1.1.2-3) ... Setting up bsdmainutils (9.0.12+nmu1ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libmircore1:ppc64el (0.28.1+18.04.20171030-0ubuntu1) ... Setting up x11-common (1:7.7+19ubuntu3) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libprotobuf-lite10:ppc64el (3.0.0-9ubuntu5) ... Setting up libgles2-mesa:ppc64el (17.2.2-0ubuntu1) ... Setting up libwayland-cursor0:ppc64el (1.14.0-1) ... Setting up libx11-data (2:1.6.4-3) ... Setting up libxau6:ppc64el (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-4ubuntu1) ... Setting up libdbus-1-3:ppc64el (1.12.0-1ubuntu1) ... Setting up libavahi-common-data:ppc64el (0.6.32-1ubuntu1) ... Setting up libwayland-server0:ppc64el (1.14.0-1) ... Setting up libwebp6:ppc64el (0.6.0-3) ... Setting up libfile-stripnondeterminism-perl (0.040-1) ... Setting up libjpeg8:ppc64el (8c-2ubuntu8) ... Setting up libqt5core5a:ppc64el (5.9.2+dfsg-4ubuntu5) ... Setting up libwayland-bin (1.14.0-1) ... Setting up libqt5dbus5:ppc64el (5.9.2+dfsg-4ubuntu5) ... Setting up fontconfig-config (2.12.6-0ubuntu1) ... Setting up libgstreamer1.0-0:ppc64el (1.12.3-1) ... Setcap worked! gst-ptp-helper is not suid! Setting up libqt5network5:ppc64el (5.9.2+dfsg-4ubuntu5) ... Setting up x11proto-core-dev (7.0.31-1) ... Setting up libwacom2:ppc64el (0.26-1) ... Setting up libxshmfence-dev:ppc64el (1.2-1) ... Setting up gettext (0.19.8.1-4ubuntu1) ... Setting up libmirprotobuf3:ppc64el (0.28.1+18.04.20171030-0ubuntu1) ... Setting up libboost-filesystem1.65.1:ppc64el (1.65.1+dfsg-0ubuntu2) ... Setting up libqt5test5:ppc64el (5.9.2+dfsg-4ubuntu5) ... Setting up libharfbuzz0b:ppc64el (1.6.2-1) ... Setting up libxau-dev:ppc64el (1:1.0.8-1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.32-1) ... Setting up libinput-bin (1.8.2-1ubuntu2) ... Setting up libdrm2:ppc64el (2.4.85-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libxdmcp-dev:ppc64el (1:1.1.2-3) ... Setting up libqt5xml5:ppc64el (5.9.2+dfsg-4ubuntu5) ... Setting up libqt5positioning5:ppc64el (5.9.2+dfsg-2build1) ... Setting up automake (1:1.15.1-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libqt5sql5:ppc64el (5.9.2+dfsg-4ubuntu5) ... Setting up libice6:ppc64el (2:1.0.9-2) ... Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libmircommon7:ppc64el (0.28.1+18.04.20171030-0ubuntu1) ... Setting up libavahi-common3:ppc64el (0.6.32-1ubuntu1) ... Setting up libdrm-radeon1:ppc64el (2.4.85-1) ... Setting up libdrm-nouveau2:ppc64el (2.4.85-1) ... Setting up libwayland-dev:ppc64el (1.14.0-1) ... Setting up libxcb1:ppc64el (1.12-1ubuntu1) ... Setting up x11proto-input-dev (2.3.2-1) ... Setting up libqt5concurrent5:ppc64el (5.9.2+dfsg-4ubuntu5) ... Setting up libxcb-xkb1:ppc64el (1.12-1ubuntu1) ... Setting up libqt5qml5:ppc64el (5.9.2-3ubuntu1) ... Setting up libtool (2.4.6-2) ... Setting up libxcb-xinerama0:ppc64el (1.12-1ubuntu1) ... Setting up libxcb-present0:ppc64el (1.12-1ubuntu1) ... Setting up libgstreamer-plugins-base1.0-0:ppc64el (1.12.3-1) ... Setting up libfontconfig1:ppc64el (2.12.6-0ubuntu1) ... Setting up qtbase5-dev-tools (5.9.2+dfsg-4ubuntu5) ... Setting up libxcb-dri2-0:ppc64el (1.12-1ubuntu1) ... Setting up libsm6:ppc64el (2:1.2.2-1) ... Setting up libqt5sensors5:ppc64el (5.9.2-2build1) ... Setting up libxcb-dri3-0:ppc64el (1.12-1ubuntu1) ... Setting up libxcb-glx0:ppc64el (1.12-1ubuntu1) ... Setting up libxcb-randr0:ppc64el (1.12-1ubuntu1) ... Setting up libxcb-xfixes0:ppc64el (1.12-1ubuntu1) ... Setting up libxcb-icccm4:ppc64el (0.4.1-1ubuntu1) ... Setting up libxcb-render0:ppc64el (1.12-1ubuntu1) ... Setting up po-debconf (1.0.20) ... Setting up libdrm-amdgpu1:ppc64el (2.4.85-1) ... Setting up libdrm-dev:ppc64el (2.4.85-1) ... Setting up libgbm1:ppc64el (17.2.2-0ubuntu1) ... Setting up libx11-6:ppc64el (2:1.6.4-3) ... Setting up libinput10:ppc64el (1.8.2-1ubuntu2) ... Setting up libgl1-mesa-dri:ppc64el (17.2.2-0ubuntu1) ... Setting up libmirclient9:ppc64el (0.28.1+18.04.20171030-0ubuntu1) ... Setting up libxcb-util1:ppc64el (0.4.0-0ubuntu3) ... Setting up libxkbcommon-x11-0:ppc64el (0.7.1-2) ... Setting up libxcb-sync1:ppc64el (1.12-1ubuntu1) ... Setting up x11proto-xext-dev (7.3.0-1) ... Setting up libxcb-shm0:ppc64el (1.12-1ubuntu1) ... Setting up libxcb-shape0:ppc64el (1.12-1ubuntu1) ... Setting up libxcb1-dev:ppc64el (1.12-1ubuntu1) ... Setting up libxcb-glx0-dev:ppc64el (1.12-1ubuntu1) ... Setting up libavahi-client3:ppc64el (0.6.32-1ubuntu1) ... Setting up libxcb-keysyms1:ppc64el (0.4.0-1) ... Setting up libx11-dev:ppc64el (2:1.6.4-3) ... Setting up libqt5webchannel5:ppc64el (5.9.2-2) ... Setting up libxcb-sync-dev:ppc64el (1.12-1ubuntu1) ... Setting up fontconfig (2.12.6-0ubuntu1) ... Regenerating fonts cache... done. Setting up libcups2:ppc64el (2.2.6-1) ... Setting up libegl1-mesa:ppc64el (17.2.2-0ubuntu1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/mesa-egl/ld.so.conf to provide /etc/ld.so.conf.d/powerpc64le-linux-gnu_EGL.conf (powerpc64le-linux-gnu_egl_conf) in auto mode Setting up libx11-xcb-dev:ppc64el (2:1.6.4-3) ... Setting up libxcb-render-util0:ppc64el (0.3.9-1) ... Setting up libxdamage1:ppc64el (1:1.1.4-3) ... Setting up libxcb-image0:ppc64el (0.4.0-1build1) ... Setting up mesa-common-dev:ppc64el (17.2.2-0ubuntu1) ... Setting up libxext6:ppc64el (2:1.3.3-1) ... Setting up libxfixes3:ppc64el (1:5.0.3-1) ... Setting up x11proto-fixes-dev (1:5.0-2ubuntu2) ... Setting up libxcb-dri2-0-dev:ppc64el (1.12-1ubuntu1) ... Setting up libxcb-render0-dev:ppc64el (1.12-1ubuntu1) ... Setting up x11proto-damage-dev (1:1.2.1-2) ... Setting up libxcb-dri3-dev:ppc64el (1.12-1ubuntu1) ... Setting up libxext-dev:ppc64el (2:1.3.3-1) ... Setting up libwayland-egl1-mesa:ppc64el (17.2.2-0ubuntu1) ... Setting up libxcb-shape0-dev:ppc64el (1.12-1ubuntu1) ... Setting up libxxf86vm1:ppc64el (1:1.1.4-1) ... Setting up libxxf86vm-dev:ppc64el (1:1.1.4-1) ... Setting up libxfixes-dev:ppc64el (1:5.0.3-1) ... Setting up libxi6:ppc64el (2:1.7.9-1) ... Setting up libxcb-randr0-dev:ppc64el (1.12-1ubuntu1) ... Setting up libxcb-xfixes0-dev:ppc64el (1.12-1ubuntu1) ... Setting up libxdamage-dev:ppc64el (1:1.1.4-3) ... Setting up libgl1-mesa-glx:ppc64el (17.2.2-0ubuntu1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/mesa/ld.so.conf to provide /etc/ld.so.conf.d/powerpc64le-linux-gnu_GL.conf (powerpc64le-linux-gnu_gl_conf) in auto mode Setting up libqt5gui5:ppc64el (5.9.2+dfsg-4ubuntu5) ... Setting up libglu1-mesa:ppc64el (9.0.0-2.1build1) ... Setting up libxcb-present-dev:ppc64el (1.12-1ubuntu1) ... Setting up libqt5quick5:ppc64el (5.9.2-3ubuntu1) ... Setting up libqt5widgets5:ppc64el (5.9.2+dfsg-4ubuntu5) ... Setting up libqt5printsupport5:ppc64el (5.9.2+dfsg-4ubuntu5) ... Setting up libqt5help5:ppc64el (5.9.2-3ubuntu1) ... Setting up libgl1-mesa-dev:ppc64el (17.2.2-0ubuntu1) ... Setting up libegl1-mesa-dev:ppc64el (17.2.2-0ubuntu1) ... Setting up libqt5designer5:ppc64el (5.9.2-3ubuntu1) ... Setting up libglu1-mesa-dev:ppc64el (9.0.0-2.1build1) ... Setting up libqt5quickwidgets5:ppc64el (5.9.2-3ubuntu1) ... Setting up libqt5webkit5:ppc64el (5.212.0~alpha2-5) ... Setting up libqt5designercomponents5:ppc64el (5.9.2-3ubuntu1) ... Setting up libgles2-mesa-dev:ppc64el (17.2.2-0ubuntu1) ... Setting up qttools5-dev-tools (5.9.2-3ubuntu1) ... Setting up qtbase5-dev:ppc64el (5.9.2+dfsg-4ubuntu5) ... Setting up dh-autoreconf (14) ... Setting up dh-strip-nondeterminism (0.040-1) ... Setting up debhelper (10.10.5ubuntu1) ... Setting up sbuild-build-depends-clustalx-dummy (0.invalid.0) ... (Reading database ... 20568 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Processing triggers for systemd (235-2ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-97-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.29.1-6ubuntu1 dpkg-dev_1.19.0.4ubuntu1 g++-7_7.2.0-12ubuntu1 gcc-7_7.2.0-12ubuntu1 libc6-dev_2.26-0ubuntu2 libstdc++-7-dev_7.2.0-12ubuntu1 libstdc++6_7.2.0-12ubuntu1 linux-libc-dev_4.13.0-16.19 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 apt_1.6~alpha3 autoconf_2.69-11 automake_1:1.15.1-3ubuntu1 autopoint_0.19.8.1-4ubuntu1 autotools-dev_20161112.1+nmu1 base-files_10ubuntu1 base-passwd_3.5.44 bash_4.4-5ubuntu1 binutils_2.29.1-6ubuntu1 binutils-common_2.29.1-6ubuntu1 binutils-powerpc64le-linux-gnu_2.29.1-6ubuntu1 bsdmainutils_9.0.12+nmu1ubuntu1 bsdutils_1:2.30.1-0ubuntu4 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.26-3ubuntu4 cpp_4:7.2.0-1ubuntu1 cpp-7_7.2.0-12ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.64 debhelper_10.10.5ubuntu1 debianutils_4.8.2 dh-autoreconf_14 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dmsetup_2:1.02.137-2ubuntu3 dpkg_1.19.0.4ubuntu1 dpkg-dev_1.19.0.4ubuntu1 e2fslibs_1.43.7-1 e2fsprogs_1.43.7-1 fakeroot_1.21-1ubuntu2 fdisk_2.30.1-0ubuntu4 file_1:5.32-1 findutils_4.6.0+git+20170729-2 fontconfig_2.12.6-0ubuntu1 fontconfig-config_2.12.6-0ubuntu1 fonts-dejavu-core_2.37-1 g++_4:7.2.0-1ubuntu1 g++-7_7.2.0-12ubuntu1 gcc_4:7.2.0-1ubuntu1 gcc-7_7.2.0-12ubuntu1 gcc-7-base_7.2.0-12ubuntu1 gettext_0.19.8.1-4ubuntu1 gettext-base_0.19.8.1-4ubuntu1 gnupg_2.1.15-1ubuntu8 gnupg-agent_2.1.15-1ubuntu8 gpgv_2.1.15-1ubuntu8 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5ubuntu1 hostname_3.18 init_1.49ubuntu1 init-system-helpers_1.49ubuntu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 iso-codes_3.76-1 libacl1_2.2.52-3build1 libapparmor1_2.11.0-2ubuntu18 libapt-pkg5.0_1.6~alpha3 libarchive-zip-perl_1.59-1 libasan4_7.2.0-12ubuntu1 libasn1-8-heimdal_7.4.0.dfsg.1-2 libassuan0_2.4.3-3 libatomic1_7.2.0-12ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.7.7-1ubuntu2 libaudit1_1:2.7.7-1ubuntu2 libavahi-client3_0.6.32-1ubuntu1 libavahi-common-data_0.6.32-1ubuntu1 libavahi-common3_0.6.32-1ubuntu1 libbinutils_2.29.1-6ubuntu1 libblkid1_2.30.1-0ubuntu4 libboost-filesystem1.65.1_1.65.1+dfsg-0ubuntu2 libboost-system1.65.1_1.65.1+dfsg-0ubuntu2 libbsd0_0.8.6-2 libbz2-1.0_1.0.6-8.1 libc-bin_2.26-0ubuntu2 libc-dev-bin_2.26-0ubuntu2 libc6_2.26-0ubuntu2 libc6-dev_2.26-0ubuntu2 libcap-ng0_0.7.7-3.1 libcap2_1:2.25-1.1 libcap2-bin_1:2.25-1.1 libcapnp-0.6.1_0.6.1-1 libcc1-0_7.2.0-12ubuntu1 libcomerr2_1.43.7-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4ubuntu1 libcups2_2.2.6-1 libcurl3-gnutls_7.55.1-1ubuntu2.1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.0-1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.137-2ubuntu3 libdouble-conversion1_2.0.1-4ubuntu1 libdpkg-perl_1.19.0.4ubuntu1 libdrm-amdgpu1_2.4.85-1 libdrm-common_2.4.85-1 libdrm-dev_2.4.85-1 libdrm-nouveau2_2.4.85-1 libdrm-radeon1_2.4.85-1 libdrm2_2.4.85-1 libedit2_3.1-20170329-1 libegl1-mesa_17.2.2-0ubuntu1 libegl1-mesa-dev_17.2.2-0ubuntu1 libelf1_0.170-0.1 libevdev2_1.5.7+dfsg-1 libexpat1_2.2.3-1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.30.1-0ubuntu4 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.040-1 libfontconfig1_2.12.6-0ubuntu1 libfreetype6_2.8-0.2ubuntu2 libgbm1_17.2.2-0ubuntu1 libgcc-7-dev_7.2.0-12ubuntu1 libgcc1_1:7.2.0-12ubuntu1 libgcrypt20_1.7.9-1 libgdbm3_1.8.3-14 libgl1-mesa-dev_17.2.2-0ubuntu1 libgl1-mesa-dri_17.2.2-0ubuntu1 libgl1-mesa-glx_17.2.2-0ubuntu1 libglapi-mesa_17.2.2-0ubuntu1 libgles2-mesa_17.2.2-0ubuntu1 libgles2-mesa-dev_17.2.2-0ubuntu1 libglib2.0-0_2.54.1-1ubuntu1 libglu1-mesa_9.0.0-2.1build1 libglu1-mesa-dev_9.0.0-2.1build1 libgmp10_2:6.1.2+dfsg-1.1 libgnutls30_3.5.8-6ubuntu3 libgomp1_7.2.0-12ubuntu1 libgpg-error0_1.27-4 libgraphite2-3_1.3.10-6 libgssapi-krb5-2_1.15.1-2 libgssapi3-heimdal_7.4.0.dfsg.1-2 libgstreamer-plugins-base1.0-0_1.12.3-1 libgstreamer1.0-0_1.12.3-1 libgudev-1.0-0_1:232-1 libharfbuzz0b_1.6.2-1 libhcrypto4-heimdal_7.4.0.dfsg.1-2 libheimbase1-heimdal_7.4.0.dfsg.1-2 libheimntlm0-heimdal_7.4.0.dfsg.1-2 libhogweed4_3.3-2 libhx509-5-heimdal_7.4.0.dfsg.1-2 libhyphen0_2.8.8-5 libice6_2:1.0.9-2 libicu59_59.1-3ubuntu1 libidn11_1.33-2 libidn2-0_2.0.2-5 libinput-bin_1.8.2-1ubuntu2 libinput10_1.8.2-1ubuntu2 libip4tc0_1.6.1-2ubuntu1 libisl15_0.18-1 libitm1_7.2.0-12ubuntu1 libjpeg-turbo8_1.5.2-0ubuntu5 libjpeg8_8c-2ubuntu8 libk5crypto3_1.15.1-2 libkeyutils1_1.5.9-9.1ubuntu1 libkmod2_24-1ubuntu2 libkrb5-26-heimdal_7.4.0.dfsg.1-2 libkrb5-3_1.15.1-2 libkrb5support0_1.15.1-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1ubuntu1 libldap-common_2.4.45+dfsg-1ubuntu1 libllvm5.0_1:5.0-4 liblockfile-bin_1.14-1 liblockfile1_1.14-1 liblsan0_7.2.0-12ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmirclient9_0.28.1+18.04.20171030-0ubuntu1 libmircommon7_0.28.1+18.04.20171030-0ubuntu1 libmircore1_0.28.1+18.04.20171030-0ubuntu1 libmirprotobuf3_0.28.1+18.04.20171030-0ubuntu1 libmount1_2.30.1-0ubuntu4 libmpc3_1.0.3-2 libmpfr4_3.1.6-1 libmtdev1_1.1.5-1ubuntu2 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-2 libnpth0_1.5-2 liborc-0.4-0_1:0.4.27-1 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpcre3_2:8.39-5ubuntu3 libperl5.26_5.26.1-2ubuntu1 libpipeline1_1.4.2-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-1ubuntu2 libprotobuf-lite10_3.0.0-9ubuntu5 libpsl5_0.18.0-4 libpthread-stubs0-dev_0.3-4 libqt5concurrent5_5.9.2+dfsg-4ubuntu5 libqt5core5a_5.9.2+dfsg-4ubuntu5 libqt5dbus5_5.9.2+dfsg-4ubuntu5 libqt5designer5_5.9.2-3ubuntu1 libqt5designercomponents5_5.9.2-3ubuntu1 libqt5gui5_5.9.2+dfsg-4ubuntu5 libqt5help5_5.9.2-3ubuntu1 libqt5network5_5.9.2+dfsg-4ubuntu5 libqt5positioning5_5.9.2+dfsg-2build1 libqt5printsupport5_5.9.2+dfsg-4ubuntu5 libqt5qml5_5.9.2-3ubuntu1 libqt5quick5_5.9.2-3ubuntu1 libqt5quickwidgets5_5.9.2-3ubuntu1 libqt5sensors5_5.9.2-2build1 libqt5sql5_5.9.2+dfsg-4ubuntu5 libqt5test5_5.9.2+dfsg-4ubuntu5 libqt5webchannel5_5.9.2-2 libqt5webkit5_5.212.0~alpha2-5 libqt5widgets5_5.9.2+dfsg-4ubuntu5 libqt5xml5_5.9.2+dfsg-4ubuntu5 libreadline7_7.0-0ubuntu2 libroken18-heimdal_7.4.0.dfsg.1-2 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu1 libseccomp2_2.3.1-2.1ubuntu3 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsensors4_1:3.4.0-4 libsepol1_2.7-1 libsigsegv2_2.11-1 libslang2_2.3.1-5ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.30.1-0ubuntu4 libsqlite3-0_3.20.1-2 libss2_1.43.7-1 libssl1.0.0_1.0.2g-1ubuntu13 libstdc++-7-dev_7.2.0-12ubuntu1 libstdc++6_7.2.0-12ubuntu1 libsystemd0_235-2ubuntu1 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libtsan0_7.2.0-12ubuntu1 libubsan0_7.2.0-12ubuntu1 libudev1_235-2ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.30.1-0ubuntu4 libwacom-common_0.26-1 libwacom2_0.26-1 libwayland-bin_1.14.0-1 libwayland-client0_1.14.0-1 libwayland-cursor0_1.14.0-1 libwayland-dev_1.14.0-1 libwayland-egl1-mesa_17.2.2-0ubuntu1 libwayland-server0_1.14.0-1 libwebp6_0.6.0-3 libwind0-heimdal_7.4.0.dfsg.1-2 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libx11-dev_2:1.6.4-3 libx11-xcb-dev_2:1.6.4-3 libx11-xcb1_2:1.6.4-3 libxau-dev_1:1.0.8-1 libxau6_1:1.0.8-1 libxcb-dri2-0_1.12-1ubuntu1 libxcb-dri2-0-dev_1.12-1ubuntu1 libxcb-dri3-0_1.12-1ubuntu1 libxcb-dri3-dev_1.12-1ubuntu1 libxcb-glx0_1.12-1ubuntu1 libxcb-glx0-dev_1.12-1ubuntu1 libxcb-icccm4_0.4.1-1ubuntu1 libxcb-image0_0.4.0-1build1 libxcb-keysyms1_0.4.0-1 libxcb-present-dev_1.12-1ubuntu1 libxcb-present0_1.12-1ubuntu1 libxcb-randr0_1.12-1ubuntu1 libxcb-randr0-dev_1.12-1ubuntu1 libxcb-render-util0_0.3.9-1 libxcb-render0_1.12-1ubuntu1 libxcb-render0-dev_1.12-1ubuntu1 libxcb-shape0_1.12-1ubuntu1 libxcb-shape0-dev_1.12-1ubuntu1 libxcb-shm0_1.12-1ubuntu1 libxcb-sync-dev_1.12-1ubuntu1 libxcb-sync1_1.12-1ubuntu1 libxcb-util1_0.4.0-0ubuntu3 libxcb-xfixes0_1.12-1ubuntu1 libxcb-xfixes0-dev_1.12-1ubuntu1 libxcb-xinerama0_1.12-1ubuntu1 libxcb-xkb1_1.12-1ubuntu1 libxcb1_1.12-1ubuntu1 libxcb1-dev_1.12-1ubuntu1 libxdamage-dev_1:1.1.4-3 libxdamage1_1:1.1.4-3 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1 libxext6_2:1.3.3-1 libxfixes-dev_1:5.0.3-1 libxfixes3_1:5.0.3-1 libxi6_2:1.7.9-1 libxkbcommon-x11-0_0.7.1-2 libxkbcommon0_0.7.1-2 libxml2_2.9.4+dfsg1-5ubuntu1 libxshmfence-dev_1.2-1 libxshmfence1_1.2-1 libxslt1.1_1.1.29-2.1ubuntu1 libxxf86vm-dev_1:1.1.4-1 libxxf86vm1_1:1.1.4-1 linux-libc-dev_4.13.0-16.19 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu4 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mesa-common-dev_17.2.2-0ubuntu1 mount_2.30.1-0ubuntu4 multiarch-support_2.26-0ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu13 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu4 patch_2.7.5-1build1 perl_5.26.1-2ubuntu1 perl-base_5.26.1-2ubuntu1 perl-modules-5.26_5.26.1-2ubuntu1 pinentry-curses_1.0.0-3 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 qt5-qmake_5.9.2+dfsg-4ubuntu5 qt5-qmake-bin_5.9.2+dfsg-4ubuntu5 qtbase5-dev_5.9.2+dfsg-4ubuntu5 qtbase5-dev-tools_5.9.2+dfsg-4ubuntu5 qtchooser_64-ga1b6736-4 qttools5-dev-tools_5.9.2-3ubuntu1 readline-common_7.0-0ubuntu2 sbuild-build-depends-clustalx-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_235-2ubuntu1 systemd-sysv_235-2ubuntu1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2017c-1 ubuntu-keyring_2016.10.27 ucf_3.0036 util-linux_2.30.1-0ubuntu4 x11-common_1:7.7+19ubuntu3 x11proto-core-dev_7.0.31-1 x11proto-damage-dev_1:1.2.1-2 x11proto-dri2-dev_2.8-2 x11proto-fixes-dev_1:5.0-2ubuntu2 x11proto-gl-dev_1.4.17-1 x11proto-input-dev_2.3.2-1 x11proto-kb-dev_1.0.7-1 x11proto-xext-dev_7.3.0-1 x11proto-xf86vidmode-dev_2.3.1-2 xkb-data_2.19-1.1ubuntu1 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Sep 11 12:08:51 2017 UTC gpgv: using RSA key gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clustalx_2.1+lgpl-6.dsc dpkg-source: info: extracting clustalx in clustalx-2.1+lgpl dpkg-source: info: unpacking clustalx_2.1+lgpl.orig.tar.gz dpkg-source: info: unpacking clustalx_2.1+lgpl-6.debian.tar.xz dpkg-source: info: applying hardcode-accessory-file-locations.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying qt5.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13653820 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13653820 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13653820 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package clustalx dpkg-buildpackage: info: source version 2.1+lgpl-6 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build clustalx-2.1+lgpl dpkg-buildpackage: info: host architecture ppc64el fakeroot debian/rules clean dh clean dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/<>/clustalx-2.1+lgpl' rm -f moc_* dh_clean make[1]: Leaving directory '/<>/clustalx-2.1+lgpl' debian/rules build-arch dh build-arch dh_update_autotools_config -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/clustalx-2.1+lgpl' qmake Info: creating stash file /<>/clustalx-2.1+lgpl/.qmake.stash # did not found a better way to push hardening flags into Makefile sed -i -e "s:CFLAGS *= .*:& -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:CXXFLAGS *= .*:& -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:LFLAGS *= .*:& -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now:" Makefile make[1]: Leaving directory '/<>/clustalx-2.1+lgpl' dh_auto_build -a make -j1 make[1]: Entering directory '/<>/clustalx-2.1+lgpl' g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentFormatOptions.o AlignmentFormatOptions.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentParameters.o AlignmentParameters.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8:0, from AlignmentParameters.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ AlignmentParameters.cpp: In member function ‘virtual void AlignmentParameters::showEvent(QShowEvent*)’: AlignmentParameters.cpp:48:49: warning: unused parameter ‘event’ [-Wunused-parameter] void AlignmentParameters::showEvent(QShowEvent* event) ^~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentViewerWidget.o AlignmentViewerWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from AlignmentViewerWidget.cpp:66: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from AlignmentViewerWidget.cpp:68:0: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from AlignmentViewerWidget.cpp:66: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68:0: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from AlignmentViewerWidget.cpp:66: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68:0: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from AlignmentViewerWidget.cpp:66: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68:0: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from AlignmentViewerWidget.cpp:66: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68:0: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from AlignmentViewerWidget.cpp:66: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68:0: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from AlignmentViewerWidget.cpp:66: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68:0: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from AlignmentViewerWidget.cpp:66: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68:0: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from AlignmentViewerWidget.cpp:66: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68:0: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from AlignmentViewerWidget.cpp:66: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘int AlignmentViewerWidget::makeGapPenaltyData()’: AlignmentViewerWidget.cpp:588:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i = 0; i < len && i < gapMask->size(); i++) ~~^~~~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘int AlignmentViewerWidget::makeSecStructData()’: AlignmentViewerWidget.cpp:645:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i = 0; i < len && i < _secStructMask->size();i++) ~~^~~~~~~~~~~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp:652:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i = 0; i < len && i < ssMask.size(); i++) ~~^~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘virtual void AlignmentViewerWidget::resizeEvent(QResizeEvent*)’: AlignmentViewerWidget.cpp:781:58: warning: unused parameter ‘event’ [-Wunused-parameter] void AlignmentViewerWidget::resizeEvent ( QResizeEvent * event ) ^~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentWidget.o AlignmentWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from AlignmentWidget.cpp:49: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from AlignmentWidget.cpp:49:0: AlignmentWidget.h: In constructor ‘AlignmentWidget::AlignmentWidget(int, int, QFont*, QWidget*)’: AlignmentWidget.h:170:10: warning: ‘AlignmentWidget::blackAndWhite’ will be initialized after [-Wreorder] bool blackAndWhite; ^~~~~~~~~~~~~ AlignmentWidget.h:161:27: warning: ‘std::vector >* AlignmentWidget::selectedColoredRes’ [-Wreorder] std::vector* selectedColoredRes; ^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:65:1: warning: when initialized here [-Wreorder] AlignmentWidget::AlignmentWidget(int boxwidth, int boxsize, QFont* font, QWidget *parent) ^~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::calculatePixMaps()’: AlignmentWidget.cpp:225:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(unsigned int j = 0; j < lengthLongestSeq; j++) ~~^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:235:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(code >= 0 && code < conservationPixmaps->size()) ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:268:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(codeForAA >=0 && codeForAA < lowScoreColoredRes->size()) ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:280:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(codeForAA >=0 && codeForAA < exceptionalColoredRes->size()) ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:291:86: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(colMask.getRowSize() > (i - extraRow) && colMask.getColSize() > j) ~~~~~~~~~~~~~~~~~~~~~^~~ AlignmentWidget.cpp:215:9: warning: unused variable ‘codeForSpace’ [-Wunused-variable] int codeForSpace = clustalw::userParameters->resIndex( ^~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::generateSecStructurePixmaps()’: AlignmentWidget.cpp:333:14: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(i < secStructPixmaps->size() && i < secStructInfo.size()) ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::drawContents(QPainter*, int, int, int, int)’: AlignmentWidget.cpp:569:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(selectedRes >= selectedColoredRes->size()) ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::calcConserveInfo()’: AlignmentWidget.cpp:689:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int j = 1; j <= strongGroup.size(); j++) ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:693:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int j = 1; j <= weakGroup.size(); j++) ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:700:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if((i + _fRes - 1 < (*alignment)[j].size()) && ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:701:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] (i + _fRes - 1 < (*alignment)[_fSeq].size())) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:725:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int k = 1; k <= strongGroup.size(); k++) ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:737:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int k = 1; k <= weakGroup.size(); k++) ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:760:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int k = 1; k <= strongGroup.size(); k++) ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:771:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int k = 1; k <= weakGroup.size(); k++) ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::makeColorMask(clustalw::Array2D*, ColorParameters*)’: AlignmentWidget.cpp:878:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘QString AlignmentWidget::initConsensus()’: AlignmentWidget.cpp:927:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::generatePixMaps()’: AlignmentWidget.cpp:1039:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int j = 0; j < aminoAcid.size(); j++) ~~^~~~~~~~~~~~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o AlignOutputFileNames.o AlignOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from AlignOutputFileNames.cpp:26: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from AlignOutputFileNames.cpp:26:0: AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr outFileNames; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from AlignOutputFileNames.h:9, from AlignOutputFileNames.cpp:26: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o BootstrapTreeDialog.o BootstrapTreeDialog.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from BootstrapTreeDialog.cpp:18: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from BootstrapTreeDialog.cpp:18:0: BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from BootstrapTreeDialog.h:10, from BootstrapTreeDialog.cpp:18: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ColorFileXmlParser.o ColorFileXmlParser.cpp ColorFileXmlParser.cpp:74:13: warning: multi-line comment [-Wcomment] // tr("colorrules not found in the parameter file, using\ ^ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from ColorFileXmlParser.cpp:3: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘int ColorFileXmlParser::parseRGBIndex(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:85:46: warning: unused parameter ‘parentItem’ [-Wunused-parameter] QTreeWidgetItem *parentItem) ^~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘void ColorFileXmlParser::parseConsensus(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:138:86: warning: unused parameter ‘parentItem’ [-Wunused-parameter] void ColorFileXmlParser::parseConsensus(const QDomElement &element, QTreeWidgetItem *parentItem) ^~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘int ColorFileXmlParser::parseColorRule(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:175:85: warning: unused parameter ‘parentItem’ [-Wunused-parameter] int ColorFileXmlParser::parseColorRule(const QDomElement &element, QTreeWidgetItem *parentItem) ^~~~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ColorParameters.o ColorParameters.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorParameters.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘QColor ColorParameters::getResidueColor(QChar, QChar)’: ColorParameters.cpp:160:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i = 0; i < colorPar.size(); i++) ~~^~~~~~~~~~~~~~~~~ ColorParameters.cpp:174:26: warning: unused variable ‘temp’ [-Wunused-variable] char temp = colorPar[i].consensusConditionList[j].toLatin1(); ^~~~ ColorParameters.cpp:157:10: warning: unused variable ‘showRes’ [-Wunused-variable] char showRes = res.toLatin1(); ^~~~~~~ ColorParameters.cpp:158:10: warning: unused variable ‘showCon’ [-Wunused-variable] char showCon = consensus.toLatin1(); ^~~~~~~ ColorParameters.cpp: In member function ‘int ColorParameters::getResidueColorNum(QChar, QChar)’: ColorParameters.cpp:197:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i = 0; i < colorPar.size(); i++) ~~^~~~~~~~~~~~~~~~~ ColorParameters.cpp:211:26: warning: unused variable ‘temp’ [-Wunused-variable] char temp = colorPar[i].consensusConditionList[j].toLatin1(); ^~~~ ColorParameters.cpp:194:10: warning: unused variable ‘showRes’ [-Wunused-variable] char showRes = res.toLatin1(); ^~~~~~~ ColorParameters.cpp:195:10: warning: unused variable ‘showCon’ [-Wunused-variable] char showCon = consensus.toLatin1(); ^~~~~~~ ColorParameters.cpp: In member function ‘void ColorParameters::printColorInfo()’: ColorParameters.cpp:229:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < colors.size(); i++) ~~^~~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘int ColorParameters::getIndexOfColor(QColor)’: ColorParameters.cpp:238:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < colors.size(); i++) ~~^~~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘QColor ColorParameters::getColorFromNum(int)’: ColorParameters.cpp:251:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(colorNum > 0 && colorNum - 1 < colorPar.size()) ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ColumnScoreParams.o ColumnScoreParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8:0, from ColumnScoreParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ ColumnScoreParams.cpp: In member function ‘virtual void ColumnScoreParams::showEvent(QShowEvent*)’: ColumnScoreParams.cpp:51:47: warning: unused parameter ‘event’ [-Wunused-parameter] void ColumnScoreParams::showEvent(QShowEvent* event) ^~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o FileDialog.o FileDialog.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o HardCodedColorScheme.o HardCodedColorScheme.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from HardCodedColorScheme.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o HelpDisplayWidget.o HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from HelpDisplayWidget.cpp:15: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ HelpDisplayWidget.cpp: In member function ‘std::__cxx11::string* HelpDisplayWidget::loadHelpInformation(char)’: HelpDisplayWidget.cpp:61:13: warning: variable ‘number’ set but not used [-Wunused-but-set-variable] int i, number, nlines; ^~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o HistogramWidget.o HistogramWidget.cpp HistogramWidget.cpp: In member function ‘void HistogramWidget::drawContents(QPainter*, int, int, int, int)’: HistogramWidget.cpp:180:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(column >= 0 && column < arrayOfHeights->size()) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ HistogramWidget.cpp:198:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(column >= 0 && column < arrayOfHeights->size()) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o KeyController.o KeyController.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o LowScoringSegParams.o LowScoringSegParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8:0, from LowScoringSegParams.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ LowScoringSegParams.cpp: In member function ‘virtual void LowScoringSegParams::showEvent(QShowEvent*)’: LowScoringSegParams.cpp:51:49: warning: unused parameter ‘event’ [-Wunused-parameter] void LowScoringSegParams::showEvent(QShowEvent* event) ^~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o main.o main.cpp In file included from main.cpp:21:0: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18:0, from mainwindow.h:45, from main.cpp:24: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o mainwindow.o mainwindow.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18:0, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from mainwindow.cpp:99:0: WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr params; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from mainwindow.cpp:100:0: AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr outFileNames; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from mainwindow.cpp:101:0: TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from mainwindow.cpp:102:0: BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ mainwindow.cpp: In member function ‘virtual void MainWindow::showEvent(QShowEvent*)’: mainwindow.cpp:198:40: warning: unused parameter ‘event’ [-Wunused-parameter] void MainWindow::showEvent(QShowEvent* event) ^~~~~ mainwindow.cpp: In member function ‘void MainWindow::writeViewer1AsPostscript(int)’: mainwindow.cpp:1454:47: warning: unused parameter ‘type’ [-Wunused-parameter] void MainWindow::writeViewer1AsPostscript(int type) ^~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o PairwiseParams.o PairwiseParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8:0, from PairwiseParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ PairwiseParams.cpp: In member function ‘virtual void PairwiseParams::showEvent(QShowEvent*)’: PairwiseParams.cpp:74:44: warning: unused parameter ‘event’ [-Wunused-parameter] void PairwiseParams::showEvent(QShowEvent* event) ^~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o PostscriptFileParams.o PostscriptFileParams.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from PostscriptFileParams.h:4, from PostscriptFileParams.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ProteinGapParameters.o ProteinGapParameters.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o PSPrinter.o PSPrinter.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from PSPrinter.cpp:20: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::writePSFile(PostscriptFileParams*)’: PSPrinter.cpp:207:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(res.isLetter() && resNumber.size() > i - data->firstSeq) ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ PSPrinter.cpp:307:67: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(res.isLetter() && resNumber.size() > seq) ~~~~~~~~~~~~~~~~~^~~~~ PSPrinter.cpp:421:67: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(res.isLetter() && resNumber.size() > i) ~~~~~~~~~~~~~~~~~^~~ PSPrinter.cpp:55:9: warning: unused variable ‘err’ [-Wunused-variable] int err; ^~~ PSPrinter.cpp:73:9: warning: unused variable ‘gapPos1’ [-Wunused-variable] int gapPos1 = clustalw::userParameters->getGapPos1(); // Mark: 22-1-2007 new local ^~~~~~~ PSPrinter.cpp:74:9: warning: unused variable ‘gapPos2’ [-Wunused-variable] int gapPos2 = clustalw::userParameters->getGapPos2(); // Mark: 22-1-2007 new local ^~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printHeaderLine(std::ofstream*, int, int, int)’: PSPrinter.cpp:587:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(data->nameHeader.size() > ix) ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printFooterLine(std::ofstream*, int, int)’: PSPrinter.cpp:730:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i = fr; i <= lr && i < ruler.length(); i++) ~~^~~~~~~~~~~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printQualityCurve(std::ofstream*, int, int, int)’: PSPrinter.cpp:789:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i = fr + 1; i <= lr && i < data->histogram->size(); i++) ~~^~~~~~~~~~~~~~~~~~~~~~~~~ PSPrinter.cpp:781:14: warning: unused variable ‘psY’ [-Wunused-variable] int psX, psY, curveBottom; ^~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o QTUtility.o QTUtility.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o Resources.o Resources.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o SaveSeqFile.o SaveSeqFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from SaveSeqFile.cpp:23: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from SaveSeqFile.cpp:26:0: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from SaveSeqFile.cpp:23: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26:0: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from SaveSeqFile.cpp:23: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26:0: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from SaveSeqFile.cpp:23: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26:0: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from SaveSeqFile.cpp:23: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26:0: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from SaveSeqFile.cpp:23: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26:0: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from SaveSeqFile.cpp:23: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26:0: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from SaveSeqFile.cpp:23: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26:0: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from SaveSeqFile.cpp:23: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26:0: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from SaveSeqFile.cpp:23: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o SearchForString.o SearchForString.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o SecStructOptions.o SecStructOptions.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o SeqNameWidget.o SeqNameWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from SeqNameWidget.cpp:59: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ SeqNameWidget.cpp: In member function ‘virtual void SeqNameWidget::paintEvent(QPaintEvent*)’: SeqNameWidget.cpp:375:11: warning: variable ‘redrawRect’ set but not used [-Wunused-but-set-variable] QRect redrawRect = event->rect(); ^~~~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o TreeFormatOptions.o TreeFormatOptions.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o TreeOutputFileNames.o TreeOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from TreeOutputFileNames.cpp:17: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from TreeOutputFileNames.cpp:17:0: TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from TreeOutputFileNames.h:9, from TreeOutputFileNames.cpp:17: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o WritePostscriptFile.o WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from WritePostscriptFile.cpp:24: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from WritePostscriptFile.cpp:24:0: WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr params; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from WritePostscriptFile.h:9, from WritePostscriptFile.cpp:24: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27:0: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from WritePostscriptFile.h:9, from WritePostscriptFile.cpp:24: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27:0: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from WritePostscriptFile.h:9, from WritePostscriptFile.cpp:24: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27:0: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from WritePostscriptFile.h:9, from WritePostscriptFile.cpp:24: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27:0: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from WritePostscriptFile.h:9, from WritePostscriptFile.cpp:24: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27:0: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from WritePostscriptFile.h:9, from WritePostscriptFile.cpp:24: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27:0: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from WritePostscriptFile.h:9, from WritePostscriptFile.cpp:24: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27:0: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from WritePostscriptFile.h:9, from WritePostscriptFile.cpp:24: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27:0: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from WritePostscriptFile.h:9, from WritePostscriptFile.cpp:24: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27:0: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from WritePostscriptFile.h:9, from WritePostscriptFile.cpp:24: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o Clustal.o clustalW/Clustal.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/Clustal.h:18, from clustalW/Clustal.cpp:27: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18:0, from clustalW/Clustal.cpp:27: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33:0: clustalW/tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33:0: clustalW/tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33:0: clustalW/tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33:0: clustalW/tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33:0: clustalW/tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33:0: clustalW/tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33:0: clustalW/tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/Clustal.cpp: In member function ‘void clustalw::Clustal::align(std::__cxx11::string*, bool)’: clustalW/Clustal.cpp:162:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/Clustal.cpp: In member function ‘void clustalw::Clustal::doAlignUseOldTree(std::__cxx11::string*)’: clustalW/Clustal.cpp:837:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o Help.o clustalW/Help.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o Alignment.o clustalW/alignment/Alignment.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/Alignment.cpp:25: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/Alignment.cpp: In member function ‘bool clustalw::Alignment::keepPortionOfSeqArray(int, int)’: clustalW/alignment/Alignment.cpp:1715:24: warning: variable ‘posToAddTo’ set but not used [-Wunused-but-set-variable] SeqArray::iterator posToAddTo = sectionToRealign.begin(); ^~~~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentOutput.o clustalW/alignment/AlignmentOutput.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/AlignmentOutput.h:24, from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27:0: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27:0: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27:0: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27:0: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27:0: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27:0: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27:0: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27:0: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27:0: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp:512:40: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bool AlignmentOutput::openExplicitFile(auto_ptr& outFile, string fileName) ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp:535:40: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] string AlignmentOutput::openOutputFile(auto_ptr& outFile, string prompt, ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ObjectiveScore.o clustalW/alignment/ObjectiveScore.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/ObjectiveScore.h:15, from clustalW/alignment/ObjectiveScore.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o Sequence.o clustalW/alignment/Sequence.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ClustalFileParser.o clustalW/fileInput/ClustalFileParser.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o EMBLFileParser.o clustalW/fileInput/EMBLFileParser.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o FileParser.o clustalW/fileInput/FileParser.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o FileReader.o clustalW/fileInput/FileReader.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/fileInput/FileReader.cpp:29: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/fileInput/FileReader.cpp:29:0: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/fileInput/FileReader.cpp: In member function ‘int clustalw::FileReader::readSeqs(clustalw::Alignment*, int, std::__cxx11::string*)’: clustalW/fileInput/FileReader.cpp:155:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fileParser; // Means we dont need to delete it! ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/fileInput/FileReader.cpp: At global scope: clustalW/fileInput/FileReader.cpp:426:42: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] void FileReader::checkInfile(int *nseqs, auto_ptr& fileParser) ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o GDEFileParser.o clustalW/fileInput/GDEFileParser.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o InFileStream.o clustalW/fileInput/InFileStream.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o MSFFileParser.o clustalW/fileInput/MSFFileParser.cpp clustalW/fileInput/MSFFileParser.cpp: In member function ‘virtual std::vector clustalw::MSFFileParser::getSeqRange(int, int, std::__cxx11::string*)’: clustalW/fileInput/MSFFileParser.cpp:34:79: warning: unused parameter ‘offendingSeq’ [-Wunused-parameter] vector MSFFileParser::getSeqRange(int firstSeq, int no, string *offendingSeq) ^~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp: In member function ‘virtual void clustalw::MSFFileParser::getSecStructure(std::vector&, std::vector&, std::__cxx11::string&, int&, int)’: clustalW/fileInput/MSFFileParser.cpp:246:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ^~~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:246:81: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ^~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:247:45: warning: unused parameter ‘secStructName’ [-Wunused-parameter] string& secStructName, int &structPenalties, int length) ^~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:247:86: warning: unused parameter ‘length’ [-Wunused-parameter] string& secStructName, int &structPenalties, int length) ^~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o PearsonFileParser.o clustalW/fileInput/PearsonFileParser.cpp clustalW/fileInput/PearsonFileParser.cpp: In member function ‘virtual clustalw::Sequence clustalw::PearsonFileParser::getSeq(int, std::__cxx11::string*)’: clustalW/fileInput/PearsonFileParser.cpp:199:60: warning: unused parameter ‘offendingSeq’ [-Wunused-parameter] Sequence PearsonFileParser::getSeq(int seqNum, string *offendingSeq) ^~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp: In member function ‘virtual void clustalw::PearsonFileParser::getSecStructure(std::vector&, std::vector&, std::__cxx11::string&, int&, int)’: clustalW/fileInput/PearsonFileParser.cpp:444:55: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] void PearsonFileParser::getSecStructure(vector& gapPenaltyMask, ^~~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:445:40: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] vector& secStructMask, string& secStructName, ^~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:445:63: warning: unused parameter ‘secStructName’ [-Wunused-parameter] vector& secStructMask, string& secStructName, ^~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:446:53: warning: unused parameter ‘length’ [-Wunused-parameter] int &structPenalties, int length) ^~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o PIRFileParser.o clustalW/fileInput/PIRFileParser.cpp clustalW/fileInput/PIRFileParser.cpp: In member function ‘virtual void clustalw::PIRFileParser::getSecStructure(std::vector&, std::vector&, std::__cxx11::string&, int&, int)’: clustalW/fileInput/PIRFileParser.cpp:292:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ^~~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:292:81: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ^~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:293:45: warning: unused parameter ‘secStructName’ [-Wunused-parameter] string& secStructName, int &structPenalties, int length) ^~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:293:86: warning: unused parameter ‘length’ [-Wunused-parameter] string& secStructName, int &structPenalties, int length) ^~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o RSFFileParser.o clustalW/fileInput/RSFFileParser.cpp clustalW/fileInput/RSFFileParser.cpp: In member function ‘virtual void clustalw::RSFFileParser::getSecStructure(std::vector&, std::vector&, std::__cxx11::string&, int&, int)’: clustalW/fileInput/RSFFileParser.cpp:240:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] void RSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ^~~~~~~~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ClustalWResources.o clustalW/general/ClustalWResources.cpp clustalW/general/ClustalWResources.cpp: In member function ‘std::__cxx11::string clustalw::ClustalWResources::findFile(std::__cxx11::string, clustalw::ClustalWResourcePathType) const’: clustalW/general/ClustalWResources.cpp:106:12: warning: array subscript is above array bounds [-Warray-bounds] delim[1] = 0; ~~~~~~~^ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o DebugLog.o clustalW/general/DebugLog.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o OutputFile.o clustalW/general/OutputFile.cpp In file included from clustalW/general/OutputFile.cpp:9:0: clustalW/general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr file; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/general/OutputFile.h:8, from clustalW/general/OutputFile.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o Stats.o clustalW/general/Stats.cpp In file included from clustalW/general/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/general/../alignment/Alignment.h:42, from clustalW/general/Stats.cpp:15: clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o SymMatrix.o clustalW/general/SymMatrix.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o UserParameters.o clustalW/general/UserParameters.cpp clustalW/general/UserParameters.cpp: In constructor ‘clustalw::UserParameters::UserParameters(bool)’: clustalW/general/UserParameters.cpp:33:37: warning: unused parameter ‘log’ [-Wunused-parameter] UserParameters::UserParameters(bool log) ^~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o Utility.o clustalW/general/Utility.cpp clustalW/general/Utility.cpp: In member function ‘bool clustalw::Utility::lineType(char*, const char*)’: clustalW/general/Utility.cpp:251:8: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] int n; ^ clustalW/general/Utility.cpp: In member function ‘virtual void clustalw::Utility::setInfoLabelPtr(QLabel*)’: clustalW/general/Utility.cpp:519:39: warning: unused parameter ‘ptrToLabelObj’ [-Wunused-parameter] void Utility::setInfoLabelPtr(QLabel* ptrToLabelObj) ^~~~~~~~~~~~~ clustalW/general/Utility.cpp: In member function ‘double clustalw::Utility::getReal(const char*, double, double, double)’: clustalW/general/Utility.cpp:183:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, stdin); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ clustalW/general/Utility.cpp: In member function ‘int clustalw::Utility::getInt(const char*, int, int, int)’: clustalW/general/Utility.cpp:221:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, stdin); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o VectorOutOfRange.o clustalW/general/VectorOutOfRange.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o CommandLineParser.o clustalW/interface/CommandLineParser.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/interface/../Clustal.h:18:0, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20:0, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20:0, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20:0, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20:0, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20:0, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20:0, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20:0, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20:0, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20:0, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o InteractiveMenu.o clustalW/interface/InteractiveMenu.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/interface/../Clustal.h:18:0, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20:0, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20:0, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20:0, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20:0, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20:0, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20:0, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20:0, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20:0, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20:0, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/interface/InteractiveMenu.cpp: In member function ‘int clustalw::InteractiveMenu::secStrOutputOptions()’: clustalW/interface/InteractiveMenu.cpp:520:36: warning: this statement may fall through [-Wimplicit-fallthrough=] clustalObj->getHelp('C'); ~~~~~~~~~~~~~~~~~~~^~~~~ clustalW/interface/InteractiveMenu.cpp:521:13: note: here case 'Q': ^~~~ clustalW/interface/InteractiveMenu.cpp: In member function ‘void clustalw::InteractiveMenu::doSystem()’: clustalW/interface/InteractiveMenu.cpp:1190:15: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(lin1.c_str()); ~~~~~~^~~~~~~~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o Iteration.o clustalW/multipleAlign/Iteration.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17:0: clustalW/multipleAlign/../tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17:0: clustalW/multipleAlign/../tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17:0: clustalW/multipleAlign/../tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17:0: clustalW/multipleAlign/../tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17:0: clustalW/multipleAlign/../tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17:0: clustalW/multipleAlign/../tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17:0: clustalW/multipleAlign/../tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/multipleAlign/Iteration.cpp: In member function ‘bool clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)’: clustalW/multipleAlign/Iteration.cpp:170:9: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] int count; ^~~~~ clustalW/multipleAlign/Iteration.cpp:231:24: warning: ignoring return value of ‘char* tmpnam(char*)’, declared with attribute warn_unused_result [-Wunused-result] tmpnam (buffer); ~~~~~~~^~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o LowScoreSegProfile.o clustalW/multipleAlign/LowScoreSegProfile.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/LowScoreSegProfile.h:13, from clustalW/multipleAlign/LowScoreSegProfile.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o MSA.o clustalW/multipleAlign/MSA.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/MSA.h:10, from clustalW/multipleAlign/MSA.cpp:16: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/MSA.cpp: In member function ‘int clustalw::MSA::multiSeqAlign(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, clustalw::AlignmentSteps*, int)’: clustalW/multipleAlign/MSA.cpp:340:11: warning: unused variable ‘alignmentScore’ [-Wunused-variable] int alignmentScore = alnPtr->alignScore(); // ?? check, FS, 2009-05-18 ^~~~~~~~~~~~~~ clustalW/multipleAlign/MSA.cpp: In member function ‘int clustalw::MSA::seqsAlignToProfile(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, int, std::__cxx11::string)’: clustalW/multipleAlign/MSA.cpp:359:35: warning: unused parameter ‘phylipName’ [-Wunused-parameter] string phylipName) ^~~~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o MyersMillerProfileAlign.o clustalW/multipleAlign/MyersMillerProfileAlign.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileAlignAlgorithm.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.cpp:10: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileBase.o clustalW/multipleAlign/ProfileBase.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/ProfileBase.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/ProfileBase.cpp: In member function ‘void clustalw::ProfileBase::calcResidueSpecificPen(clustalw::SeqArray*, std::vector*)’: clustalW/multipleAlign/ProfileBase.cpp:372:25: warning: comparison is always false due to limited range of data type [-Wtype-limits] if ((ix < 0) || (ix > _maxAA)) ~~~^~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileStandard.o clustalW/multipleAlign/ProfileStandard.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileStandard.h:9, from clustalW/multipleAlign/ProfileStandard.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileWithSub.o clustalW/multipleAlign/ProfileWithSub.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileWithSub.h:9, from clustalW/multipleAlign/ProfileWithSub.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o FastPairwiseAlign.o clustalW/pairwise/FastPairwiseAlign.cpp In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FastPairwiseAlign.h:9, from clustalW/pairwise/FastPairwiseAlign.cpp:10: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o FullPairwiseAlign.o clustalW/pairwise/FullPairwiseAlign.cpp In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FullPairwiseAlign.h:9, from clustalW/pairwise/FullPairwiseAlign.cpp:9: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o SubMatrix.o clustalW/substitutionMatrix/SubMatrix.cpp In file included from clustalW/substitutionMatrix/SubMatrix.cpp:15:0: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::tempInterface(int, int)’: clustalW/substitutionMatrix/SubMatrix.cpp:1613:35: warning: unused parameter ‘alignResidueType’ [-Wunused-parameter] void SubMatrix::tempInterface(int alignResidueType, int alignType) ^~~~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp:1613:57: warning: unused parameter ‘alignType’ [-Wunused-parameter] void SubMatrix::tempInterface(int alignResidueType, int alignType) ^~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::getQTMatrixForHistogram(int (*)[32])’: clustalW/substitutionMatrix/SubMatrix.cpp:1657:9: warning: variable ‘maxRes’ set but not used [-Wunused-but-set-variable] int maxRes; ^~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::getQTMatrixForLowScoreSeg(int (*)[32])’: clustalW/substitutionMatrix/SubMatrix.cpp:1717:9: warning: variable ‘maxRes’ set but not used [-Wunused-but-set-variable] int maxRes; ^~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘int clustalw::SubMatrix::readMatrixSeries(const char*, clustalw::Matrix&, clustalw::Xref&)’: clustalW/substitutionMatrix/SubMatrix.cpp:1103:19: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] return (maxRes); ^ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentSteps.o clustalW/tree/AlignmentSteps.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ClusterTree.o clustalW/tree/ClusterTree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23:0, from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr file; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/ClusterTree.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/ClusterTree.cpp:9:0: clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr quickDistMat; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/ClusterTree.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/ClusterTree.cpp: In member function ‘void clustalw::ClusterTree::calcPercIdentity(std::ofstream*, clustalw::Alignment*)’: clustalW/tree/ClusterTree.cpp:580:9: warning: variable ‘rs’ set but not used [-Wunused-but-set-variable] int rs = 0, rl = 0; ^~ clustalW/tree/ClusterTree.cpp:580:17: warning: variable ‘rl’ set but not used [-Wunused-but-set-variable] int rs = 0, rl = 0; ^~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ClusterTreeOutput.o clustalW/tree/ClusterTreeOutput.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTreeOutput.h:11, from clustalW/tree/ClusterTreeOutput.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/../alignment/../general/clustalw.h:44:0, from clustalW/tree/../alignment/../general/Utility.h:15, from clustalW/tree/../alignment/../general/utils.h:8, from clustalW/tree/../alignment/../general/UserParameters.h:22, from clustalW/tree/../alignment/../general/userparams.h:8, from clustalW/tree/../alignment/Sequence.h:20, from clustalW/tree/../alignment/Alignment.h:41, from clustalW/tree/ClusterTreeOutput.h:11, from clustalW/tree/ClusterTreeOutput.cpp:9: clustalW/tree/../alignment/../general/SymMatrix.h: In member function ‘void clustalw::ClusterTreeOutput::printPhylipTree(clustalw::PhyloTree*, std::ofstream*, clustalw::Alignment*, clustalw::DistMatrix*, std::vector*)’: clustalW/tree/../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] if (_i > _j) ^~ clustalW/tree/../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] if (_i > _j) ^~ clustalW/tree/../alignment/../general/SymMatrix.h: In member function ‘void clustalw::ClusterTreeOutput::printNexusTree(clustalw::PhyloTree*, std::ofstream*, clustalw::Alignment*, clustalw::DistMatrix*, std::vector*)’: clustalW/tree/../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] if (_i > _j) ^~ clustalW/tree/../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] if (_i > _j) ^~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o NJTree.o clustalW/tree/NJTree.cpp In file included from clustalW/tree/../general/clustalw.h:44:0, from clustalW/tree/ClusterTreeAlgorithm.h:12, from clustalW/tree/NJTree.h:11, from clustalW/tree/NJTree.cpp:10: clustalW/tree/../general/SymMatrix.h: In member function ‘virtual void clustalw::NJTree::generateTree(clustalw::PhyloTree*, clustalw::DistMatrix*, clustalw::SeqInfo*, std::ofstream*)’: clustalW/tree/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] if (_i > _j) ^~ clustalW/tree/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] if (_i > _j) ^~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o RandomGenerator.o clustalW/tree/RandomGenerator.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o Tree.o clustalW/tree/Tree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/Tree.cpp:10:0: clustalW/tree/Tree.h:26:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr createSets(int firstSeq, int lastSeq); ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/Tree.cpp:278:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr Tree::createSets(int firstSeq, int lastSeq) ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/Tree.cpp: In member function ‘std::auto_ptr clustalw::Tree::createSets(int, int)’: clustalW/tree/Tree.cpp:280:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr progAlignSteps; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o TreeInterface.o clustalW/tree/TreeInterface.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/TreeInterface.h:19, from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15:0: clustalW/tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15:0: clustalW/tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15:0: clustalW/tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15:0: clustalW/tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15:0: clustalW/tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15:0: clustalW/tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15:0: clustalW/tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23:0, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/TreeInterface.cpp:17: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr file; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UnRootedClusterTree.h:8:0, from clustalW/tree/TreeInterface.cpp:17: clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr quickDistMat; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:18:0: clustalW/tree/Tree.h:26:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr createSets(int firstSeq, int lastSeq); ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:23:0: clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr treeFromDistMatrix(RootedGuideTree* phyloTree, ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp:31:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp:103:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp:195:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromDistMatNJ(std::vector*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::__cxx11::string*, bool*)’: clustalW/tree/TreeInterface.cpp:200:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:208:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsUseOldGuideTreeNJ(clustalw::DistMatrix*, clustalw::Alignment*, std::__cxx11::string*, std::vector*, int, int, bool*)’: clustalW/tree/TreeInterface.cpp:214:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:439:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromTreeNJ(clustalw::Alignment*, clustalw::DistMatrix*, std::__cxx11::string*, std::vector*, int, int, bool*)’: clustalW/tree/TreeInterface.cpp:445:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:485:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromDistMatUPGMA(std::vector*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::__cxx11::string*, bool*)’: clustalW/tree/TreeInterface.cpp:490:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:503:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr TreeInterface::generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, DistMatrix* distMat, Alignment *alignPtr, int seq1, int nSeqs, ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::generateTreeFromDistMatUPGMA(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::__cxx11::string*, bool*)’: clustalW/tree/TreeInterface.cpp:506:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o UnRootedClusterTree.o clustalW/tree/UnRootedClusterTree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23:0, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr file; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UnRootedClusterTree.h:8:0, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr quickDistMat; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/../alignment/../general/clustalw.h:44:0, from clustalW/tree/../alignment/../general/Utility.h:15, from clustalW/tree/../alignment/../general/utils.h:8, from clustalW/tree/../alignment/../general/UserParameters.h:22, from clustalW/tree/../alignment/../general/userparams.h:8, from clustalW/tree/../alignment/Sequence.h:20, from clustalW/tree/../alignment/Alignment.h:41, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../alignment/../general/SymMatrix.h: In member function ‘void clustalw::UnRootedClusterTree::treeFromDistMatrix(clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::__cxx11::string&)’: clustalW/tree/../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] if (_i > _j) ^~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o Node.o clustalW/tree/UPGMA/Node.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o RootedClusterTree.o clustalW/tree/UPGMA/RootedClusterTree.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/../ClusterTree.h:20, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/../ClusterTree.h:23:0, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr file; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.h:8:0, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr quickDistMat; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:9:0: clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr treeFromDistMatrix(RootedGuideTree* phyloTree, ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:11:0: clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr generateTree(RootedGuideTree* phyTree, ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:11:0: clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.cpp:17:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr RootedClusterTree::treeFromDistMatrix(RootedGuideTree* phyloTree,DistMatrix* distMat, Alignment *alignPtr, ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.cpp: In member function ‘std::auto_ptr clustalw::RootedClusterTree::treeFromDistMatrix(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::__cxx11::string&)’: clustalW/tree/UPGMA/RootedClusterTree.cpp:21:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UPGMA/../../alignment/../general/clustalw.h:44:0, from clustalW/tree/UPGMA/../../alignment/../general/Utility.h:15, from clustalW/tree/UPGMA/../../alignment/../general/utils.h:8, from clustalW/tree/UPGMA/../../alignment/../general/UserParameters.h:22, from clustalW/tree/UPGMA/../../alignment/../general/userparams.h:8, from clustalW/tree/UPGMA/../../alignment/Sequence.h:20, from clustalW/tree/UPGMA/../../alignment/Alignment.h:41, from clustalW/tree/UPGMA/../ClusterTree.h:20, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] if (_i > _j) ^~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o RootedGuideTree.o clustalW/tree/UPGMA/RootedGuideTree.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedGuideTree.cpp:10: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o RootedTreeOutput.o clustalW/tree/UPGMA/RootedTreeOutput.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedTreeOutput.h:15, from clustalW/tree/UPGMA/RootedTreeOutput.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/../../alignment/../general/clustalw.h:44:0, from clustalW/tree/UPGMA/../../alignment/../general/Utility.h:15, from clustalW/tree/UPGMA/../../alignment/../general/utils.h:8, from clustalW/tree/UPGMA/../../alignment/../general/UserParameters.h:22, from clustalW/tree/UPGMA/../../alignment/../general/userparams.h:8, from clustalW/tree/UPGMA/../../alignment/Sequence.h:20, from clustalW/tree/UPGMA/../../alignment/Alignment.h:41, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedTreeOutput.h:15, from clustalW/tree/UPGMA/RootedTreeOutput.cpp:9: clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h: In member function ‘void clustalw::RootedTreeOutput::printPhylipTree(clustalw::RootedGuideTree*, std::ofstream*, clustalw::Alignment*, clustalw::DistMatrix*)’: clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] if (_i > _j) ^~ clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] if (_i > _j) ^~ clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h: In member function ‘void clustalw::RootedTreeOutput::printNexusTree(clustalw::RootedGuideTree*, std::ofstream*, clustalw::Alignment*, clustalw::DistMatrix*)’: clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] if (_i > _j) ^~ clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] if (_i > _j) ^~ g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o UPGMAAlgorithm.o clustalW/tree/UPGMA/UPGMAAlgorithm.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:8, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4:0: clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr generateTree(RootedGuideTree* phyTree, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4:0: clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:27:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr UPGMAAlgorithm::generateTree(RootedGuideTree* phyTree, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -pipe -O2 -Wall -W -dM -E -o moc_predefs.h /usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/features/data/dummy.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include AlignmentFormatOptions.h -o moc_AlignmentFormatOptions.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentFormatOptions.o moc_AlignmentFormatOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include AlignmentParameters.h -o moc_AlignmentParameters.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentParameters.o moc_AlignmentParameters.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include AlignmentViewerWidget.h -o moc_AlignmentViewerWidget.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentViewerWidget.o moc_AlignmentViewerWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from moc_AlignmentViewerWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include AlignmentWidget.h -o moc_AlignmentWidget.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentWidget.o moc_AlignmentWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from moc_AlignmentWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include AlignOutputFileNames.h -o moc_AlignOutputFileNames.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignOutputFileNames.o moc_AlignOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from moc_AlignOutputFileNames.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from moc_AlignOutputFileNames.cpp:9:0: AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr outFileNames; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from AlignOutputFileNames.h:9, from moc_AlignOutputFileNames.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include BootstrapTreeDialog.h -o moc_BootstrapTreeDialog.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_BootstrapTreeDialog.o moc_BootstrapTreeDialog.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from moc_BootstrapTreeDialog.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from moc_BootstrapTreeDialog.cpp:9:0: BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from BootstrapTreeDialog.h:10, from moc_BootstrapTreeDialog.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include ColorFileXmlParser.h -o moc_ColorFileXmlParser.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ColorFileXmlParser.o moc_ColorFileXmlParser.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from moc_ColorFileXmlParser.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include ColumnScoreParams.h -o moc_ColumnScoreParams.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ColumnScoreParams.o moc_ColumnScoreParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include FileDialog.h -o moc_FileDialog.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_FileDialog.o moc_FileDialog.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include HelpDisplayWidget.h -o moc_HelpDisplayWidget.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_HelpDisplayWidget.o moc_HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from moc_HelpDisplayWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include HistogramWidget.h -o moc_HistogramWidget.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_HistogramWidget.o moc_HistogramWidget.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include LowScoringSegParams.h -o moc_LowScoringSegParams.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_LowScoringSegParams.o moc_LowScoringSegParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include mainwindow.h -o moc_mainwindow.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_mainwindow.o moc_mainwindow.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18:0, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20:0, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/include/c++/7/bits/locale_conv.h:41:0, from /usr/include/c++/7/locale:43, from /usr/include/c++/7/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include PairwiseParams.h -o moc_PairwiseParams.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_PairwiseParams.o moc_PairwiseParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include ProteinGapParameters.h -o moc_ProteinGapParameters.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ProteinGapParameters.o moc_ProteinGapParameters.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include PSPrinter.h -o moc_PSPrinter.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_PSPrinter.o moc_PSPrinter.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from moc_PSPrinter.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include SaveSeqFile.h -o moc_SaveSeqFile.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SaveSeqFile.o moc_SaveSeqFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from moc_SaveSeqFile.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include SearchForString.h -o moc_SearchForString.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SearchForString.o moc_SearchForString.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include SecStructOptions.h -o moc_SecStructOptions.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SecStructOptions.o moc_SecStructOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include SeqNameWidget.h -o moc_SeqNameWidget.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SeqNameWidget.o moc_SeqNameWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from moc_SeqNameWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include TreeFormatOptions.h -o moc_TreeFormatOptions.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_TreeFormatOptions.o moc_TreeFormatOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include TreeOutputFileNames.h -o moc_TreeOutputFileNames.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_TreeOutputFileNames.o moc_TreeOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from moc_TreeOutputFileNames.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from moc_TreeOutputFileNames.cpp:9:0: TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from TreeOutputFileNames.h:9, from moc_TreeOutputFileNames.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include ./moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/7 -I/usr/include/powerpc64le-linux-gnu/c++/7 -I/usr/include/c++/7/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/7/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include WritePostscriptFile.h -o moc_WritePostscriptFile.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_WritePostscriptFile.o moc_WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from moc_WritePostscriptFile.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from moc_WritePostscriptFile.cpp:9:0: WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr params; ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from WritePostscriptFile.h:9, from moc_WritePostscriptFile.cpp:9: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o clustalx AlignmentFormatOptions.o AlignmentParameters.o AlignmentViewerWidget.o AlignmentWidget.o AlignOutputFileNames.o BootstrapTreeDialog.o ColorFileXmlParser.o ColorParameters.o ColumnScoreParams.o FileDialog.o HardCodedColorScheme.o HelpDisplayWidget.o HistogramWidget.o KeyController.o LowScoringSegParams.o main.o mainwindow.o PairwiseParams.o PostscriptFileParams.o ProteinGapParameters.o PSPrinter.o QTUtility.o Resources.o SaveSeqFile.o SearchForString.o SecStructOptions.o SeqNameWidget.o TreeFormatOptions.o TreeOutputFileNames.o WritePostscriptFile.o Clustal.o Help.o Alignment.o AlignmentOutput.o ObjectiveScore.o Sequence.o ClustalFileParser.o EMBLFileParser.o FileParser.o FileReader.o GDEFileParser.o InFileStream.o MSFFileParser.o PearsonFileParser.o PIRFileParser.o RSFFileParser.o ClustalWResources.o DebugLog.o OutputFile.o Stats.o SymMatrix.o UserParameters.o Utility.o VectorOutOfRange.o CommandLineParser.o InteractiveMenu.o Iteration.o LowScoreSegProfile.o MSA.o MyersMillerProfileAlign.o ProfileBase.o ProfileStandard.o ProfileWithSub.o FastPairwiseAlign.o FullPairwiseAlign.o SubMatrix.o AlignmentSteps.o ClusterTree.o ClusterTreeOutput.o NJTree.o RandomGenerator.o Tree.o TreeInterface.o UnRootedClusterTree.o Node.o RootedClusterTree.o RootedGuideTree.o RootedTreeOutput.o UPGMAAlgorithm.o moc_AlignmentFormatOptions.o moc_AlignmentParameters.o moc_AlignmentViewerWidget.o moc_AlignmentWidget.o moc_AlignOutputFileNames.o moc_BootstrapTreeDialog.o moc_ColorFileXmlParser.o moc_ColumnScoreParams.o moc_FileDialog.o moc_HelpDisplayWidget.o moc_HistogramWidget.o moc_LowScoringSegParams.o moc_mainwindow.o moc_PairwiseParams.o moc_ProteinGapParameters.o moc_PSPrinter.o moc_SaveSeqFile.o moc_SearchForString.o moc_SecStructOptions.o moc_SeqNameWidget.o moc_TreeFormatOptions.o moc_TreeOutputFileNames.o moc_WritePostscriptFile.o -lQt5Widgets -lQt5Gui -lQt5Xml -lQt5Core -lGL -lpthread Iteration.o: In function `clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)': ./clustalW/multipleAlign/Iteration.cpp:231: warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[1]: Leaving directory '/<>/clustalx-2.1+lgpl' dh_auto_test -a fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>/clustalx-2.1+lgpl' dh_installchangelogs debian/CHANGELOG.upstream make[1]: Leaving directory '/<>/clustalx-2.1+lgpl' dh_installman -a dh_installmime -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing clustalx (in debian/clustalx); do_strip: , oemstrip: pkgstriptranslations: processing clustalx-dbgsym (in debian/.debhelper/clustalx/dbgsym-root); do_strip: , oemstrip: debian/clustalx/usr/share/applications/clustalx.desktop: does not have gettext domain, not stripping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clustalx/DEBIAN/control, package clustalx, directory debian/clustalx .. removing usr/share/doc/clustalx/changelog.gz pkgstripfiles: Truncating usr/share/doc/clustalx/changelog.Debian.gz to topmost ten records pkgstripfiles: processing control file: debian/.debhelper/clustalx/dbgsym-root/DEBIAN/control, package clustalx-dbgsym, directory debian/.debhelper/clustalx/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package clustalx ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package clustalx-dbgsym ... pkgstripfiles: No PNG files. pkgstripfiles: No PNG files. dpkg-deb: building package 'clustalx' in '../clustalx_2.1+lgpl-6_ppc64el.deb'. dpkg-deb: building package 'clustalx-dbgsym' in 'debian/.debhelper/scratch-space/build-clustalx/clustalx-dbgsym_2.1+lgpl-6_ppc64el.deb'. Renaming clustalx-dbgsym_2.1+lgpl-6_ppc64el.deb to clustalx-dbgsym_2.1+lgpl-6_ppc64el.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../clustalx_2.1+lgpl-6_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build clustalx-2.1+lgpl dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20171103-0315 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clustalx_2.1+lgpl-6_ppc64el.changes: ------------------------------------ Format: 1.8 Date: Mon, 11 Sep 2017 14:03:26 +0200 Source: clustalx Binary: clustalx Architecture: ppc64el Version: 2.1+lgpl-6 Distribution: bionic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: clustalx - Multiple alignment of nucleic acid and protein sequences (graphic Closes: 874851 Changes: clustalx (2.1+lgpl-6) unstable; urgency=medium . [ Andreas Tille ] * cme fix dpkg-copyright * port to Qt5 Closes: #874851 * debian/clustalx.desktop: Add %f to Exec field * Standards-Version: 4.1.0 (no changes needed) . [ Steffen Moeller ] * debian/upstream/metadata: - added references to registries - yamllint cleanliness Checksums-Sha1: dcc01c1694b017189bbec0f646843d30a09e0b05 10358544 clustalx-dbgsym_2.1+lgpl-6_ppc64el.ddeb 47e80d2c3457b5f28da76a3287c273e91c651740 10794 clustalx_2.1+lgpl-6_ppc64el.buildinfo f2206f5e593c4143bb812bba92b3b793ad4d06d8 475640 clustalx_2.1+lgpl-6_ppc64el.deb Checksums-Sha256: d1555fe5872cb12aa452a2ceafd4cd8c31a1bcc9f74ebd671fd8d0eb822e6fc1 10358544 clustalx-dbgsym_2.1+lgpl-6_ppc64el.ddeb 277f96214dbb49bd5e819a4f2f35b8a2d0e67e429118fc5c5c7c0a9bdd41aaaf 10794 clustalx_2.1+lgpl-6_ppc64el.buildinfo c66ca3613281b0f46a8d993ff1e8f1dc95fd0415ea4e700f8cd5715e1971c7ae 475640 clustalx_2.1+lgpl-6_ppc64el.deb Files: 4b5e3aab845e71fcae1077ff996dc164 10358544 debug optional clustalx-dbgsym_2.1+lgpl-6_ppc64el.ddeb c6b3615b2cc43e526876b00506cbd97e 10794 science optional clustalx_2.1+lgpl-6_ppc64el.buildinfo 5ad86f26c8092281313842476e2fa1b5 475640 science optional clustalx_2.1+lgpl-6_ppc64el.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clustalx_2.1+lgpl-6_ppc64el.deb ------------------------------- new debian package, version 2.0. size 475640 bytes: control archive=1464 bytes. 1600 bytes, 28 lines control 804 bytes, 12 lines md5sums Package: clustalx Version: 2.1+lgpl-6 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1721 Depends: libc6 (>= 2.17), libgcc1 (>= 1:3.0), libqt5core5a (>= 5.7.0), libqt5gui5 (>= 5.2.0), libqt5widgets5 (>= 5.0.2), libqt5xml5 (>= 5.0.2), libstdc++6 (>= 5.2) Suggests: clustalw, texlive-latex-extra, boxshade Section: science Priority: optional Homepage: http://www.clustal.org/clustal2/ Description: Multiple alignment of nucleic acid and protein sequences (graphical interface) This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade. . The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment. . An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted. drwxr-xr-x root/root 0 2017-09-11 12:03 ./ drwxr-xr-x root/root 0 2017-09-11 12:03 ./usr/ drwxr-xr-x root/root 0 2017-09-11 12:03 ./usr/bin/ -rwxr-xr-x root/root 1651544 2017-09-11 12:03 ./usr/bin/clustalx drwxr-xr-x root/root 0 2017-09-11 12:03 ./usr/lib/ drwxr-xr-x root/root 0 2017-09-11 12:03 ./usr/lib/mime/ drwxr-xr-x root/root 0 2017-09-11 12:03 ./usr/lib/mime/packages/ -rw-r--r-- root/root 114 2017-09-11 12:03 ./usr/lib/mime/packages/clustalx drwxr-xr-x root/root 0 2017-09-11 12:03 ./usr/share/ drwxr-xr-x root/root 0 2017-09-11 12:03 ./usr/share/applications/ -rw-r--r-- root/root 876 2017-09-11 12:03 ./usr/share/applications/clustalx.desktop drwxr-xr-x root/root 0 2017-09-11 12:03 ./usr/share/clustalx/ -rw-r--r-- root/root 69428 2010-11-17 10:12 ./usr/share/clustalx/clustalx.hlp -rw-r--r-- root/root 847 2010-11-17 10:12 ./usr/share/clustalx/coldna.xml -rw-r--r-- root/root 1276 2010-11-17 10:12 ./usr/share/clustalx/colprint.xml -rw-r--r-- root/root 5047 2010-11-17 10:12 ./usr/share/clustalx/colprot.xml drwxr-xr-x root/root 0 2017-09-11 12:03 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-09-11 12:03 ./usr/share/doc/clustalx/ -rw-r--r-- root/root 410 2017-09-11 12:03 ./usr/share/doc/clustalx/README.Debian -rw-r--r-- root/root 1938 2017-09-11 12:03 ./usr/share/doc/clustalx/changelog.Debian.gz -rw-r--r-- root/root 1826 2017-09-11 12:03 ./usr/share/doc/clustalx/copyright drwxr-xr-x root/root 0 2017-09-11 12:03 ./usr/share/man/ drwxr-xr-x root/root 0 2017-09-11 12:03 ./usr/share/man/man1/ -rw-r--r-- root/root 797 2017-09-11 12:03 ./usr/share/man/man1/clustalx.1.gz drwxr-xr-x root/root 0 2017-09-11 12:03 ./usr/share/mime/ drwxr-xr-x root/root 0 2017-09-11 12:03 ./usr/share/mime/packages/ -rw-r--r-- root/root 513 2017-09-11 12:03 ./usr/share/mime/packages/clustalx.xml +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build-Space: 146012 Build-Time: 215 Distribution: bionic-proposed Host Architecture: ppc64el Install-Time: 26 Job: clustalx_2.1+lgpl-6.dsc Machine Architecture: ppc64el Package: clustalx Package-Time: 242 Source-Version: 2.1+lgpl-6 Space: 146012 Status: successful Version: 2.1+lgpl-6 -------------------------------------------------------------------------------- Finished at 20171103-0315 Build needed 00:04:02, 146012k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13653820 Scanning for processes to kill in build PACKAGEBUILD-13653820 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13653820 Stopping target for build PACKAGEBUILD-13653820 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13653820 Removing build PACKAGEBUILD-13653820