RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux twombly 3.8.0-2-mustang #12-Ubuntu SMP Thu Jan 9 09:48:54 UTC 2014 aarch64 Buildd toolchain package versions: launchpad-buildd_125 python-lpbuildd_125 dpkg-dev_1.17.5ubuntu5.3. Syncing the system clock with the buildd NTP service... 27 Oct 19:45:56 ntpdate[31049]: adjust time server 10.211.37.1 offset -0.040775 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-6487108', '/home/buildd/filecache-default/bf5dfa8cbd68df3e6a087b8c18a4893dff1c36e4'] Unpacking chroot for build PACKAGEBUILD-6487108 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-6487108'] Mounting chroot for build PACKAGEBUILD-6487108 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-6487108', 'deb http://ftpmaster.internal/ubuntu vivid main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu vivid-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu vivid-updates main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu vivid-proposed main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-6487108 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-6487108', 'arm64'] Updating debian chroot for build PACKAGEBUILD-6487108 Ign http://ftpmaster.internal vivid InRelease Ign http://ftpmaster.internal vivid-security InRelease Ign http://archive-team.internal vivid InRelease Ign http://ftpmaster.internal vivid-updates InRelease Ign http://archive-team.internal vivid Release.gpg Ign http://ftpmaster.internal vivid-proposed InRelease Get:1 http://archive-team.internal vivid Release [728 B] Get:2 http://ftpmaster.internal vivid Release.gpg [933 B] Get:3 http://ftpmaster.internal vivid-security Release.gpg [933 B] Get:4 http://ftpmaster.internal vivid-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal vivid-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal vivid Release [112 kB] Get:7 http://archive-team.internal vivid/main arm64 Packages Get:8 http://ftpmaster.internal vivid-security Release [59.7 kB] Ign http://archive-team.internal vivid/main Translation-en Get:9 http://ftpmaster.internal vivid-updates Release [59.7 kB] Get:10 http://ftpmaster.internal vivid-proposed Release [59.7 kB] Get:11 http://ftpmaster.internal vivid/main arm64 Packages [1278 kB] Get:12 http://ftpmaster.internal vivid/restricted arm64 Packages [14 B] Get:13 http://ftpmaster.internal vivid/universe arm64 Packages [6069 kB] Get:14 http://ftpmaster.internal vivid/multiverse arm64 Packages [109 kB] Get:15 http://ftpmaster.internal vivid/main Translation-en [770 kB] Get:16 http://ftpmaster.internal vivid/multiverse Translation-en [102 kB] Get:17 http://ftpmaster.internal vivid/restricted Translation-en [3315 B] Get:18 http://ftpmaster.internal vivid/universe Translation-en [4417 kB] Get:19 http://ftpmaster.internal vivid-security/main arm64 Packages [14 B] Get:20 http://ftpmaster.internal vivid-security/restricted arm64 Packages [14 B] Get:21 http://ftpmaster.internal vivid-security/universe arm64 Packages [14 B] Get:22 http://ftpmaster.internal vivid-security/multiverse arm64 Packages [14 B] Get:23 http://ftpmaster.internal vivid-security/main Translation-en [14 B] Get:24 http://ftpmaster.internal vivid-security/multiverse Translation-en [14 B] Get:25 http://ftpmaster.internal vivid-security/restricted Translation-en [14 B] Get:26 http://ftpmaster.internal vivid-security/universe Translation-en [14 B] Get:27 http://ftpmaster.internal vivid-updates/main arm64 Packages [14 B] Get:28 http://ftpmaster.internal vivid-updates/restricted arm64 Packages [14 B] Get:29 http://ftpmaster.internal vivid-updates/universe arm64 Packages [14 B] Get:30 http://ftpmaster.internal vivid-updates/multiverse arm64 Packages [14 B] Get:31 http://ftpmaster.internal vivid-updates/main Translation-en [14 B] Get:32 http://ftpmaster.internal vivid-updates/multiverse Translation-en [14 B] Get:33 http://ftpmaster.internal vivid-updates/restricted Translation-en [14 B] Get:34 http://ftpmaster.internal vivid-updates/universe Translation-en [14 B] Get:35 http://ftpmaster.internal vivid-proposed/main arm64 Packages [34.9 kB] Get:36 http://ftpmaster.internal vivid-proposed/restricted arm64 Packages [14 B] Get:37 http://ftpmaster.internal vivid-proposed/universe arm64 Packages [209 kB] Get:38 http://ftpmaster.internal vivid-proposed/multiverse arm64 Packages [5700 B] Get:39 http://ftpmaster.internal vivid-proposed/main Translation-en [45.4 kB] Get:40 http://ftpmaster.internal vivid-proposed/multiverse Translation-en [10.8 kB] Get:41 http://ftpmaster.internal vivid-proposed/restricted Translation-en [14 B] Get:42 http://ftpmaster.internal vivid-proposed/universe Translation-en [153 kB] Fetched 13.5 MB in 10s (1281 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libsystemd0 The following packages will be upgraded: base-files binutils bsdutils busybox-initramfs ca-certificates cpp-4.9 e2fslibs e2fsprogs g++-4.9 gcc-4.9 gcc-4.9-base grep gzip libacl1 libatomic1 libblkid1 libcomerr2 libdb5.3 libdbus-1-3 libdrm2 libgcc-4.9-dev libgcc1 libgmp10 libgomp1 libgpg-error0 libgssapi-krb5-2 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 libmount1 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libplymouth4 libsasl2-2 libsasl2-modules-db libselinux1 libslang2 libsmartcols1 libsqlite3-0 libss2 libstdc++-4.9-dev libstdc++6 libsystemd-journal0 libtasn1-6 libudev1 libusb-0.1-4 libuuid1 mount patch perl perl-base perl-modules plymouth tzdata udev util-linux zlib1g 61 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 36.1 MB of archives. After this operation, 981 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ vivid/main base-files arm64 7.2ubuntu8 [63.6 kB] Get:2 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libsystemd0 arm64 215-5ubuntu1 [54.6 kB] Get:3 http://ftpmaster.internal/ubuntu/ vivid-proposed/main bsdutils arm64 1:2.25.2-2ubuntu1 [42.8 kB] Get:4 http://ftpmaster.internal/ubuntu/ vivid/main e2fslibs arm64 1.42.12-1ubuntu1 [171 kB] Get:5 http://ftpmaster.internal/ubuntu/ vivid/main e2fsprogs arm64 1.42.12-1ubuntu1 [731 kB] Get:6 http://ftpmaster.internal/ubuntu/ vivid/main grep arm64 2.20-4 [131 kB] Get:7 http://ftpmaster.internal/ubuntu/ vivid/main gzip arm64 1.6-4ubuntu1 [80.4 kB] Get:8 http://ftpmaster.internal/ubuntu/ vivid-proposed/main mount arm64 2.25.2-2ubuntu1 [113 kB] Get:9 http://ftpmaster.internal/ubuntu/ vivid/main perl-base arm64 5.20.1-2 [1052 kB] Get:10 http://ftpmaster.internal/ubuntu/ vivid/main perl-modules all 5.20.1-2 [2531 kB] Get:11 http://ftpmaster.internal/ubuntu/ vivid/main perl arm64 5.20.1-2 [2192 kB] Get:12 http://ftpmaster.internal/ubuntu/ vivid/main libdb5.3 arm64 5.3.28-6 [562 kB] Get:13 http://ftpmaster.internal/ubuntu/ vivid-proposed/main zlib1g arm64 1:1.2.8.dfsg-2ubuntu1 [46.4 kB] Get:14 http://ftpmaster.internal/ubuntu/ vivid/main tzdata all 2014i-1 [182 kB] Get:15 http://ftpmaster.internal/ubuntu/ vivid-proposed/main util-linux arm64 2.25.2-2ubuntu1 [738 kB] Get:16 http://ftpmaster.internal/ubuntu/ vivid-proposed/main gcc-4.9-base arm64 4.9.1-19ubuntu1 [15.8 kB] Get:17 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libstdc++6 arm64 4.9.1-19ubuntu1 [257 kB] Get:18 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgomp1 arm64 4.9.1-19ubuntu1 [32.3 kB] Get:19 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libitm1 arm64 4.9.1-19ubuntu1 [26.2 kB] Get:20 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libatomic1 arm64 4.9.1-19ubuntu1 [6710 B] Get:21 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgcc-4.9-dev arm64 4.9.1-19ubuntu1 [185 kB] Get:22 http://ftpmaster.internal/ubuntu/ vivid-proposed/main cpp-4.9 arm64 4.9.1-19ubuntu1 [3911 kB] Get:23 http://ftpmaster.internal/ubuntu/ vivid-proposed/main binutils arm64 2.24.90.20141023-1ubuntu1 [2370 kB] Get:24 http://ftpmaster.internal/ubuntu/ vivid-proposed/main gcc-4.9 arm64 4.9.1-19ubuntu1 [4432 kB] Get:25 http://ftpmaster.internal/ubuntu/ vivid-proposed/main g++-4.9 arm64 4.9.1-19ubuntu1 [11.1 MB] Get:26 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libstdc++-4.9-dev arm64 4.9.1-19ubuntu1 [1100 kB] Get:27 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgcc1 arm64 1:4.9.1-19ubuntu1 [31.6 kB] Get:28 http://ftpmaster.internal/ubuntu/ vivid/main libgmp10 arm64 2:6.0.0+dfsg-6 [205 kB] Get:29 http://ftpmaster.internal/ubuntu/ vivid/main libusb-0.1-4 arm64 2:0.1.12-25 [14.6 kB] Get:30 http://ftpmaster.internal/ubuntu/ vivid/main libacl1 arm64 2.2.52-2 [14.0 kB] Get:31 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libuuid1 arm64 2.25.2-2ubuntu1 [14.5 kB] Get:32 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libblkid1 arm64 2.25.2-2ubuntu1 [85.5 kB] Get:33 http://ftpmaster.internal/ubuntu/ vivid/main libcomerr2 arm64 1.42.12-1ubuntu1 [64.6 kB] Get:34 http://ftpmaster.internal/ubuntu/ vivid/main libgpg-error0 arm64 1.17-2 [27.6 kB] Get:35 http://ftpmaster.internal/ubuntu/ vivid/main libselinux1 arm64 2.3-2 [50.4 kB] Get:36 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libmount1 arm64 2.25.2-2ubuntu1 [91.3 kB] Get:37 http://ftpmaster.internal/ubuntu/ vivid/main libpam0g arm64 1.1.8-3.1ubuntu1 [53.1 kB] Get:38 http://ftpmaster.internal/ubuntu/ vivid/main libpam-modules-bin arm64 1.1.8-3.1ubuntu1 [33.8 kB] Get:39 http://ftpmaster.internal/ubuntu/ vivid/main libpam-modules arm64 1.1.8-3.1ubuntu1 [224 kB] Get:40 http://ftpmaster.internal/ubuntu/ vivid/main libslang2 arm64 2.3.0-2ubuntu1 [358 kB] Get:41 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libsmartcols1 arm64 2.25.2-2ubuntu1 [50.8 kB] Get:42 http://ftpmaster.internal/ubuntu/ vivid/main libss2 arm64 1.42.12-1ubuntu1 [68.1 kB] Get:43 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libsystemd-journal0 arm64 215-5ubuntu1 [43.8 kB] Get:44 http://ftpmaster.internal/ubuntu/ vivid/main libp11-kit0 arm64 0.20.7-1 [61.5 kB] Get:45 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libsqlite3-0 arm64 3.8.7-1 [313 kB] Get:46 http://ftpmaster.internal/ubuntu/ vivid/main libtasn1-6 arm64 4.2-2 [37.3 kB] Get:47 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libdbus-1-3 arm64 1.8.8-2ubuntu1 [122 kB] Get:48 http://ftpmaster.internal/ubuntu/ vivid/main libdrm2 arm64 2.4.58-2 [20.5 kB] Get:49 http://ftpmaster.internal/ubuntu/ vivid/main plymouth arm64 0.9.0-0ubuntu8 [87.8 kB] Get:50 http://ftpmaster.internal/ubuntu/ vivid-proposed/main udev arm64 215-5ubuntu1 [813 kB] Get:51 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libudev1 arm64 215-5ubuntu1 [28.8 kB] Get:52 http://ftpmaster.internal/ubuntu/ vivid/main libplymouth4 arm64 0.9.0-0ubuntu8 [70.2 kB] Get:53 http://ftpmaster.internal/ubuntu/ vivid/main libgssapi-krb5-2 arm64 1.12.1+dfsg-11 [97.7 kB] Get:54 http://ftpmaster.internal/ubuntu/ vivid/main libkrb5-3 arm64 1.12.1+dfsg-11 [225 kB] Get:55 http://ftpmaster.internal/ubuntu/ vivid/main libkrb5support0 arm64 1.12.1+dfsg-11 [27.8 kB] Get:56 http://ftpmaster.internal/ubuntu/ vivid/main libk5crypto3 arm64 1.12.1+dfsg-11 [78.2 kB] Get:57 http://ftpmaster.internal/ubuntu/ vivid/main libsasl2-modules-db arm64 2.1.26.dfsg1-12 [13.0 kB] Get:58 http://ftpmaster.internal/ubuntu/ vivid/main libsasl2-2 arm64 2.1.26.dfsg1-12 [41.9 kB] Get:59 http://ftpmaster.internal/ubuntu/ vivid/main libpam-runtime all 1.1.8-3.1ubuntu1 [39.7 kB] Get:60 http://ftpmaster.internal/ubuntu/ vivid/main busybox-initramfs arm64 1:1.22.0-9ubuntu1 [166 kB] Get:61 http://ftpmaster.internal/ubuntu/ vivid/main ca-certificates all 20141019 [192 kB] Get:62 http://ftpmaster.internal/ubuntu/ vivid/main patch arm64 2.7.1-6 [77.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 36.1 MB in 38s (941 kB/s) (Reading database ... 11387 files and directories currently installed.) Preparing to unpack .../base-files_7.2ubuntu8_arm64.deb ... Unpacking base-files (7.2ubuntu8) over (7.2ubuntu7) ... Setting up base-files (7.2ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/os-release ... Selecting previously unselected package libsystemd0:arm64. (Reading database ... 11387 files and directories currently installed.) Preparing to unpack .../libsystemd0_215-5ubuntu1_arm64.deb ... Unpacking libsystemd0:arm64 (215-5ubuntu1) ... Setting up libsystemd0:arm64 (215-5ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11392 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.25.2-2ubuntu1_arm64.deb ... Unpacking bsdutils (1:2.25.2-2ubuntu1) over (1:2.25.1-3ubuntu4) ... Setting up bsdutils (1:2.25.2-2ubuntu1) ... (Reading database ... 11392 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.42.12-1ubuntu1_arm64.deb ... Unpacking e2fslibs:arm64 (1.42.12-1ubuntu1) over (1.42.10-1.1ubuntu1) ... Setting up e2fslibs:arm64 (1.42.12-1ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11392 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.42.12-1ubuntu1_arm64.deb ... Unpacking e2fsprogs (1.42.12-1ubuntu1) over (1.42.10-1.1ubuntu1) ... Setting up e2fsprogs (1.42.12-1ubuntu1) ... (Reading database ... 11394 files and directories currently installed.) Preparing to unpack .../archives/grep_2.20-4_arm64.deb ... Unpacking grep (2.20-4) over (2.20-3) ... Setting up grep (2.20-4) ... (Reading database ... 11394 files and directories currently installed.) Preparing to unpack .../gzip_1.6-4ubuntu1_arm64.deb ... Unpacking gzip (1.6-4ubuntu1) over (1.6-3ubuntu1) ... Setting up gzip (1.6-4ubuntu1) ... (Reading database ... 11394 files and directories currently installed.) Preparing to unpack .../mount_2.25.2-2ubuntu1_arm64.deb ... Unpacking mount (2.25.2-2ubuntu1) over (2.25.1-3ubuntu4) ... Setting up mount (2.25.2-2ubuntu1) ... (Reading database ... 11394 files and directories currently installed.) Preparing to unpack .../perl-base_5.20.1-2_arm64.deb ... Unpacking perl-base (5.20.1-2) over (5.20.1-1) ... Setting up perl-base (5.20.1-2) ... (Reading database ... 11394 files and directories currently installed.) Preparing to unpack .../perl-modules_5.20.1-2_all.deb ... Unpacking perl-modules (5.20.1-2) over (5.20.1-1) ... Setting up perl-modules (5.20.1-2) ... (Reading database ... 11394 files and directories currently installed.) Preparing to unpack .../perl_5.20.1-2_arm64.deb ... Unpacking perl (5.20.1-2) over (5.20.1-1) ... Setting up perl (5.20.1-2) ... (Reading database ... 11394 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28-6_arm64.deb ... Unpacking libdb5.3:arm64 (5.3.28-6) over (5.3.28-5) ... Setting up libdb5.3:arm64 (5.3.28-6) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11394 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-2ubuntu1_arm64.deb ... Unpacking zlib1g:arm64 (1:1.2.8.dfsg-2ubuntu1) over (1:1.2.8.dfsg-1ubuntu1) ... Setting up zlib1g:arm64 (1:1.2.8.dfsg-2ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11394 files and directories currently installed.) Preparing to unpack .../tzdata_2014i-1_all.deb ... Unpacking tzdata (2014i-1) over (2014h-2) ... Setting up tzdata (2014i-1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Oct 27 19:47:13 UTC 2014. Universal Time is now: Mon Oct 27 19:47:13 UTC 2014. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 11397 files and directories currently installed.) Preparing to unpack .../util-linux_2.25.2-2ubuntu1_arm64.deb ... Unpacking util-linux (2.25.2-2ubuntu1) over (2.25.1-3ubuntu4) ... Setting up util-linux (2.25.2-2ubuntu1) ... update-initramfs: deferring update (trigger activated) Processing triggers for initramfs-tools (0.103ubuntu8) ... (Reading database ... 11398 files and directories currently installed.) Preparing to unpack .../gcc-4.9-base_4.9.1-19ubuntu1_arm64.deb ... Unpacking gcc-4.9-base:arm64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Setting up gcc-4.9-base:arm64 (4.9.1-19ubuntu1) ... (Reading database ... 11398 files and directories currently installed.) Preparing to unpack .../libstdc++6_4.9.1-19ubuntu1_arm64.deb ... Unpacking libstdc++6:arm64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Setting up libstdc++6:arm64 (4.9.1-19ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11398 files and directories currently installed.) Preparing to unpack .../libgomp1_4.9.1-19ubuntu1_arm64.deb ... Unpacking libgomp1:arm64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libitm1_4.9.1-19ubuntu1_arm64.deb ... Unpacking libitm1:arm64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libatomic1_4.9.1-19ubuntu1_arm64.deb ... Unpacking libatomic1:arm64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libgcc-4.9-dev_4.9.1-19ubuntu1_arm64.deb ... Unpacking libgcc-4.9-dev:arm64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../cpp-4.9_4.9.1-19ubuntu1_arm64.deb ... Unpacking cpp-4.9 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../binutils_2.24.90.20141023-1ubuntu1_arm64.deb ... Unpacking binutils (2.24.90.20141023-1ubuntu1) over (2.24.90.20141014-0ubuntu3) ... Preparing to unpack .../gcc-4.9_4.9.1-19ubuntu1_arm64.deb ... Unpacking gcc-4.9 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../g++-4.9_4.9.1-19ubuntu1_arm64.deb ... Unpacking g++-4.9 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libstdc++-4.9-dev_4.9.1-19ubuntu1_arm64.deb ... Unpacking libstdc++-4.9-dev:arm64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libgcc1_1%3a4.9.1-19ubuntu1_arm64.deb ... Unpacking libgcc1:arm64 (1:4.9.1-19ubuntu1) over (1:4.9.1-16ubuntu6) ... Setting up libgcc1:arm64 (1:4.9.1-19ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11398 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.0.0+dfsg-6_arm64.deb ... Unpacking libgmp10:arm64 (2:6.0.0+dfsg-6) over (2:6.0.0+dfsg-4build1) ... Preparing to unpack .../libusb-0.1-4_2%3a0.1.12-25_arm64.deb ... Unpacking libusb-0.1-4:arm64 (2:0.1.12-25) over (2:0.1.12-24) ... Setting up libusb-0.1-4:arm64 (2:0.1.12-25) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11399 files and directories currently installed.) Preparing to unpack .../libacl1_2.2.52-2_arm64.deb ... Unpacking libacl1:arm64 (2.2.52-2) over (2.2.52-1.1) ... Setting up libacl1:arm64 (2.2.52-2) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11399 files and directories currently installed.) Preparing to unpack .../libuuid1_2.25.2-2ubuntu1_arm64.deb ... Unpacking libuuid1:arm64 (2.25.2-2ubuntu1) over (2.25.1-3ubuntu4) ... Setting up libuuid1:arm64 (2.25.2-2ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11399 files and directories currently installed.) Preparing to unpack .../libblkid1_2.25.2-2ubuntu1_arm64.deb ... Unpacking libblkid1:arm64 (2.25.2-2ubuntu1) over (2.25.1-3ubuntu4) ... Setting up libblkid1:arm64 (2.25.2-2ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11399 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.42.12-1ubuntu1_arm64.deb ... Unpacking libcomerr2:arm64 (1.42.12-1ubuntu1) over (1.42.10-1.1ubuntu1) ... Setting up libcomerr2:arm64 (1.42.12-1ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11399 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.17-2_arm64.deb ... Unpacking libgpg-error0:arm64 (1.17-2) over (1.13-4) ... Setting up libgpg-error0:arm64 (1.17-2) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11399 files and directories currently installed.) Preparing to unpack .../libselinux1_2.3-2_arm64.deb ... Unpacking libselinux1:arm64 (2.3-2) over (2.3-1build1) ... Setting up libselinux1:arm64 (2.3-2) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11399 files and directories currently installed.) Preparing to unpack .../libmount1_2.25.2-2ubuntu1_arm64.deb ... Unpacking libmount1:arm64 (2.25.2-2ubuntu1) over (2.25.1-3ubuntu4) ... Setting up libmount1:arm64 (2.25.2-2ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11399 files and directories currently installed.) Preparing to unpack .../libpam0g_1.1.8-3.1ubuntu1_arm64.deb ... Unpacking libpam0g:arm64 (1.1.8-3.1ubuntu1) over (1.1.8-3ubuntu4) ... Setting up libpam0g:arm64 (1.1.8-3.1ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11399 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.1.8-3.1ubuntu1_arm64.deb ... Unpacking libpam-modules-bin (1.1.8-3.1ubuntu1) over (1.1.8-3ubuntu4) ... Setting up libpam-modules-bin (1.1.8-3.1ubuntu1) ... (Reading database ... 11399 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.1.8-3.1ubuntu1_arm64.deb ... Unpacking libpam-modules:arm64 (1.1.8-3.1ubuntu1) over (1.1.8-3ubuntu4) ... Setting up libpam-modules:arm64 (1.1.8-3.1ubuntu1) ... (Reading database ... 11399 files and directories currently installed.) Preparing to unpack .../libslang2_2.3.0-2ubuntu1_arm64.deb ... Unpacking libslang2:arm64 (2.3.0-2ubuntu1) over (2.2.4-17ubuntu1) ... Setting up libslang2:arm64 (2.3.0-2ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11399 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.25.2-2ubuntu1_arm64.deb ... Unpacking libsmartcols1:arm64 (2.25.2-2ubuntu1) over (2.25.1-3ubuntu4) ... Setting up libsmartcols1:arm64 (2.25.2-2ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11399 files and directories currently installed.) Preparing to unpack .../libss2_1.42.12-1ubuntu1_arm64.deb ... Unpacking libss2:arm64 (1.42.12-1ubuntu1) over (1.42.10-1.1ubuntu1) ... Setting up libss2:arm64 (1.42.12-1ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11399 files and directories currently installed.) Preparing to unpack .../libsystemd-journal0_215-5ubuntu1_arm64.deb ... Unpacking libsystemd-journal0:arm64 (215-5ubuntu1) over (208-8ubuntu8) ... Setting up libsystemd-journal0:arm64 (215-5ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11399 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.20.7-1_arm64.deb ... Unpacking libp11-kit0:arm64 (0.20.7-1) over (0.20.2-5) ... Preparing to unpack .../libsqlite3-0_3.8.7-1_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.8.7-1) over (3.8.6-1) ... Preparing to unpack .../libtasn1-6_4.2-2_arm64.deb ... Unpacking libtasn1-6:arm64 (4.2-2) over (4.0-2) ... Preparing to unpack .../libdbus-1-3_1.8.8-2ubuntu1_arm64.deb ... Unpacking libdbus-1-3:arm64 (1.8.8-2ubuntu1) over (1.8.8-1ubuntu2) ... Preparing to unpack .../libdrm2_2.4.58-2_arm64.deb ... Unpacking libdrm2:arm64 (2.4.58-2) over (2.4.56-1) ... Preparing to unpack .../plymouth_0.9.0-0ubuntu8_arm64.deb ... Unpacking plymouth (0.9.0-0ubuntu8) over (0.9.0-0ubuntu7) ... Preparing to unpack .../udev_215-5ubuntu1_arm64.deb ... Unpacking udev (215-5ubuntu1) over (208-8ubuntu8) ... Preparing to unpack .../libudev1_215-5ubuntu1_arm64.deb ... Unpacking libudev1:arm64 (215-5ubuntu1) over (208-8ubuntu8) ... Preparing to unpack .../libplymouth4_0.9.0-0ubuntu8_arm64.deb ... Unpacking libplymouth4:arm64 (0.9.0-0ubuntu8) over (0.9.0-0ubuntu7) ... Preparing to unpack .../libgssapi-krb5-2_1.12.1+dfsg-11_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libkrb5-3_1.12.1+dfsg-11_arm64.deb ... Unpacking libkrb5-3:arm64 (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libkrb5support0_1.12.1+dfsg-11_arm64.deb ... Unpacking libkrb5support0:arm64 (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libk5crypto3_1.12.1+dfsg-11_arm64.deb ... Unpacking libk5crypto3:arm64 (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-12_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.26.dfsg1-12) over (2.1.26.dfsg1-11) ... Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-12_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.26.dfsg1-12) over (2.1.26.dfsg1-11) ... Preparing to unpack .../libpam-runtime_1.1.8-3.1ubuntu1_all.deb ... Unpacking libpam-runtime (1.1.8-3.1ubuntu1) over (1.1.8-3ubuntu4) ... Setting up libpam-runtime (1.1.8-3.1ubuntu1) ... (Reading database ... 11401 files and directories currently installed.) Preparing to unpack .../busybox-initramfs_1%3a1.22.0-9ubuntu1_arm64.deb ... Unpacking busybox-initramfs (1:1.22.0-9ubuntu1) over (1:1.22.0-8ubuntu1) ... Preparing to unpack .../ca-certificates_20141019_all.deb ... Unpacking ca-certificates (20141019) over (20140325) ... Preparing to unpack .../patch_2.7.1-6_arm64.deb ... Unpacking patch (2.7.1-6) over (2.7.1-5) ... Setting up libgomp1:arm64 (4.9.1-19ubuntu1) ... Setting up libitm1:arm64 (4.9.1-19ubuntu1) ... Setting up libatomic1:arm64 (4.9.1-19ubuntu1) ... Setting up libgcc-4.9-dev:arm64 (4.9.1-19ubuntu1) ... Setting up libgmp10:arm64 (2:6.0.0+dfsg-6) ... Setting up cpp-4.9 (4.9.1-19ubuntu1) ... Setting up binutils (2.24.90.20141023-1ubuntu1) ... Setting up gcc-4.9 (4.9.1-19ubuntu1) ... Setting up libstdc++-4.9-dev:arm64 (4.9.1-19ubuntu1) ... Setting up g++-4.9 (4.9.1-19ubuntu1) ... Setting up libp11-kit0:arm64 (0.20.7-1) ... Setting up libsqlite3-0:arm64 (3.8.7-1) ... Setting up libtasn1-6:arm64 (4.2-2) ... Setting up libdbus-1-3:arm64 (1.8.8-2ubuntu1) ... Setting up libdrm2:arm64 (2.4.58-2) ... Setting up libudev1:arm64 (215-5ubuntu1) ... Setting up libplymouth4:arm64 (0.9.0-0ubuntu8) ... Setting up udev (215-5ubuntu1) ... Installing new version of config file /etc/init.d/udev-finish ... calling: hwdb reading file '/lib/udev/hwdb.d/20-OUI.hwdb' reading file '/lib/udev/hwdb.d/20-acpi-vendor.hwdb' reading file '/lib/udev/hwdb.d/20-bluetooth-vendor-product.hwdb' reading file '/lib/udev/hwdb.d/20-net-ifname.hwdb' reading file '/lib/udev/hwdb.d/20-pci-classes.hwdb' reading file '/lib/udev/hwdb.d/20-pci-vendor-model.hwdb' reading file '/lib/udev/hwdb.d/20-sdio-classes.hwdb' reading file '/lib/udev/hwdb.d/20-sdio-vendor-model.hwdb' reading file '/lib/udev/hwdb.d/20-usb-classes.hwdb' reading file '/lib/udev/hwdb.d/20-usb-vendor-model.hwdb' reading file '/lib/udev/hwdb.d/60-keyboard.hwdb' === trie in-memory === nodes: 3670080 bytes ( 91752) children arrays: 1468016 bytes ( 91751) values arrays: 1113776 bytes ( 69611) strings: 1666046 bytes strings incoming: 3733012 bytes ( 218289) strings dedup'ed: 2128465 bytes ( 156791) === trie on-disk === size: 6449966 bytes header: 80 bytes nodes: 2202048 bytes ( 91752) child pointers: 1468016 bytes ( 91751) value pointers: 1113776 bytes ( 69611) string store: 1666046 bytes strings start: 4783920 A chroot environment has been detected, udev not started. update-initramfs: deferring update (trigger activated) Removing obsolete conffile /etc/udev/rules.d/README ... Setting up plymouth (0.9.0-0ubuntu8) ... update-initramfs: deferring update (trigger activated) Setting up libkrb5support0:arm64 (1.12.1+dfsg-11) ... Setting up libk5crypto3:arm64 (1.12.1+dfsg-11) ... Setting up libkrb5-3:arm64 (1.12.1+dfsg-11) ... Setting up libgssapi-krb5-2:arm64 (1.12.1+dfsg-11) ... Setting up libsasl2-modules-db:arm64 (2.1.26.dfsg1-12) ... Setting up libsasl2-2:arm64 (2.1.26.dfsg1-12) ... Setting up busybox-initramfs (1:1.22.0-9ubuntu1) ... Setting up ca-certificates (20141019) ... Setting up patch (2.7.1-6) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... Processing triggers for initramfs-tools (0.103ubuntu8) ... Processing triggers for ca-certificates (20141019) ... Updating certificates in /etc/ssl/certs... 10 added, 5 removed; done. Running hooks in /etc/ca-certificates/update.d....done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-6487108', 'arm64', 'vivid-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=vivid-proposed', '--purpose=PRIMARY', '--architecture=arm64', '--comp=multiverse', 'clustalx_2.1+lgpl-3.dsc'] Initiating build PACKAGEBUILD-6487108 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.8.0-2-mustang #12-Ubuntu SMP Thu Jan 9 09:48:54 UTC 2014 aarch64 Automatic build of clustalx_2.1+lgpl-3 on twombly by sbuild/arm64 1.170.5 Build started at 20141027-1948 ****************************************************************************** clustalx_2.1+lgpl-3.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), libqt4-dev Checking for already installed source dependencies... debhelper: missing libqt4-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper libqt4-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils dh-apparmor file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian libasprintf0c2 libaudio2 libcroco3 libexpat1 libfontconfig1 libfreetype6 libglib2.0-0 libice6 libjbig0 libjpeg-turbo8 libjpeg8 libmagic1 libpipeline1 libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev-bin libqt4-help libqt4-network libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtdbus4 libqtgui4 libsm6 libtiff5 libunistring0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxrender1 libxt6 man-db po-debconf qdbus qt4-linguist-tools qt4-qmake qtchooser qtcore4-l10n ucf x11-common Suggested packages: wamerican wordlist whois vacation dh-make apparmor-easyprof gettext-doc groff nas libqt4-declarative-folderlistmodel libqt4-declarative-gestures libqt4-declarative-particles libqt4-declarative-shaders qt4-qmlviewer firebird-dev libmysqlclient-dev libpq-dev libsqlite0-dev libsqlite3-dev qt4-dev-tools qt4-doc unixodbc-dev libicu52 libthai0 qt4-qtconfig less www-browser libmail-box-perl qt4-default qt5-default Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs libqt4-opengl-dev libqtwebkit-dev libqt4-sql-mysql libqt4-sql-odbc libqt4-sql-psql libqt4-sql-sqlite libcups2 xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper dh-apparmor file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian libasprintf0c2 libaudio2 libcroco3 libexpat1 libfontconfig1 libfreetype6 libglib2.0-0 libice6 libjbig0 libjpeg-turbo8 libjpeg8 libmagic1 libpipeline1 libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtdbus4 libqtgui4 libsm6 libtiff5 libunistring0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxrender1 libxt6 man-db po-debconf qdbus qt4-linguist-tools qt4-qmake qtchooser qtcore4-l10n ucf x11-common 0 upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 27.4 MB of archives. After this operation, 115 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ vivid/main libexpat1 arm64 2.1.0-6ubuntu1 [59.0 kB] Get:2 http://ftpmaster.internal/ubuntu/ vivid/main libmagic1 arm64 1:5.19-1ubuntu1.1 [195 kB] Get:3 http://ftpmaster.internal/ubuntu/ vivid/main libasprintf0c2 arm64 0.19.2-2ubuntu1 [6314 B] Get:4 http://ftpmaster.internal/ubuntu/ vivid/main libglib2.0-0 arm64 2.42.0-2 [900 kB] Get:5 http://ftpmaster.internal/ubuntu/ vivid/main libpipeline1 arm64 1.4.0-1 [22.3 kB] Get:6 http://ftpmaster.internal/ubuntu/ vivid/main libxau6 arm64 1:1.0.8-1 [7590 B] Get:7 http://ftpmaster.internal/ubuntu/ vivid/main libxdmcp6 arm64 1:1.1.1-1build1 [10.2 kB] Get:8 http://ftpmaster.internal/ubuntu/ vivid/main libxcb1 arm64 1.10-2ubuntu1 [30.7 kB] Get:9 http://ftpmaster.internal/ubuntu/ vivid/main libx11-data all 2:1.6.2-2ubuntu2 [112 kB] Get:10 http://ftpmaster.internal/ubuntu/ vivid/main libx11-6 arm64 2:1.6.2-2ubuntu2 [510 kB] Get:11 http://ftpmaster.internal/ubuntu/ vivid/main libxext6 arm64 2:1.3.3-1 [25.4 kB] Get:12 http://ftpmaster.internal/ubuntu/ vivid/main libxml2 arm64 2.9.1+dfsg1-4ubuntu1 [473 kB] Get:13 http://ftpmaster.internal/ubuntu/ vivid/main groff-base arm64 1.22.2-8 [1139 kB] Get:14 http://ftpmaster.internal/ubuntu/ vivid/main bsdmainutils arm64 9.0.5ubuntu1 [199 kB] Get:15 http://ftpmaster.internal/ubuntu/ vivid/main man-db arm64 2.7.0.2-2 [836 kB] Get:16 http://ftpmaster.internal/ubuntu/ vivid/main x11-common all 1:7.7+7ubuntu2 [62.5 kB] Get:17 http://ftpmaster.internal/ubuntu/ vivid/main libice6 arm64 2:1.0.9-1 [32.8 kB] Get:18 http://ftpmaster.internal/ubuntu/ vivid/main libsm6 arm64 2:1.2.2-1 [13.7 kB] Get:19 http://ftpmaster.internal/ubuntu/ vivid/main libxt6 arm64 1:1.1.4-1 [156 kB] Get:20 http://ftpmaster.internal/ubuntu/ vivid/main libaudio2 arm64 1.9.4-1 [51.2 kB] Get:21 http://ftpmaster.internal/ubuntu/ vivid/main libcroco3 arm64 0.6.8-3 [67.5 kB] Get:22 http://ftpmaster.internal/ubuntu/ vivid/main fonts-dejavu-core all 2.34-1ubuntu1 [1024 kB] Get:23 http://ftpmaster.internal/ubuntu/ vivid/main ucf all 3.0030 [55.5 kB] Get:24 http://ftpmaster.internal/ubuntu/ vivid/main fontconfig-config all 2.11.1-0ubuntu3 [48.7 kB] Get:25 http://ftpmaster.internal/ubuntu/ vivid/main libfreetype6 arm64 2.5.2-2ubuntu1 [270 kB] Get:26 http://ftpmaster.internal/ubuntu/ vivid/main libfontconfig1 arm64 2.11.1-0ubuntu3 [109 kB] Get:27 http://ftpmaster.internal/ubuntu/ vivid/main libjpeg-turbo8 arm64 1.3.0-0ubuntu2 [80.2 kB] Get:28 http://ftpmaster.internal/ubuntu/ vivid/main qtcore4-l10n all 4:4.8.6+git49-gbc62005+dfsg-1ubuntu1 [617 kB] Get:29 http://ftpmaster.internal/ubuntu/ vivid/main libqtcore4 arm64 4:4.8.6+git49-gbc62005+dfsg-1ubuntu1 [1436 kB] Get:30 http://ftpmaster.internal/ubuntu/ vivid/main libqt4-xml arm64 4:4.8.6+git49-gbc62005+dfsg-1ubuntu1 [88.0 kB] Get:31 http://ftpmaster.internal/ubuntu/ vivid/main libqtdbus4 arm64 4:4.8.6+git49-gbc62005+dfsg-1ubuntu1 [161 kB] Get:32 http://ftpmaster.internal/ubuntu/ vivid/main libqt4-network arm64 4:4.8.6+git49-gbc62005+dfsg-1ubuntu1 [495 kB] Get:33 http://ftpmaster.internal/ubuntu/ vivid/main libqt4-script arm64 4:4.8.6+git49-gbc62005+dfsg-1ubuntu1 [598 kB] Get:34 http://ftpmaster.internal/ubuntu/ vivid/main libqt4-sql arm64 4:4.8.6+git49-gbc62005+dfsg-1ubuntu1 [90.3 kB] Get:35 http://ftpmaster.internal/ubuntu/ vivid/main libqt4-xmlpatterns arm64 4:4.8.6+git49-gbc62005+dfsg-1ubuntu1 [908 kB] Get:36 http://ftpmaster.internal/ubuntu/ vivid/main fontconfig arm64 2.11.1-0ubuntu3 [176 kB] Get:37 http://ftpmaster.internal/ubuntu/ vivid/main libjpeg8 arm64 8c-2ubuntu8 [2198 B] Get:38 http://ftpmaster.internal/ubuntu/ vivid/main libjbig0 arm64 2.1-3ubuntu1 [24.0 kB] Get:39 http://ftpmaster.internal/ubuntu/ vivid/main libtiff5 arm64 4.0.3-10build1 [123 kB] Get:40 http://ftpmaster.internal/ubuntu/ vivid/main libxi6 arm64 2:1.7.4-1 [24.9 kB] Get:41 http://ftpmaster.internal/ubuntu/ vivid/main libxrender1 arm64 1:0.9.8-1 [18.2 kB] Get:42 http://ftpmaster.internal/ubuntu/ vivid/main libqtgui4 arm64 4:4.8.6+git49-gbc62005+dfsg-1ubuntu1 [3743 kB] Get:43 http://ftpmaster.internal/ubuntu/ vivid/main libqt4-declarative arm64 4:4.8.6+git49-gbc62005+dfsg-1ubuntu1 [963 kB] Get:44 http://ftpmaster.internal/ubuntu/ vivid/main libqt4-designer arm64 4:4.8.6+git49-gbc62005+dfsg-1ubuntu1 [3444 kB] Get:45 http://ftpmaster.internal/ubuntu/ vivid/main libqt4-help arm64 4:4.8.6+git49-gbc62005+dfsg-1ubuntu1 [184 kB] Get:46 http://ftpmaster.internal/ubuntu/ vivid/main libqt4-qt3support arm64 4:4.8.6+git49-gbc62005+dfsg-1ubuntu1 [951 kB] Get:47 http://ftpmaster.internal/ubuntu/ vivid/main libqt4-scripttools arm64 4:4.8.6+git49-gbc62005+dfsg-1ubuntu1 [198 kB] Get:48 http://ftpmaster.internal/ubuntu/ vivid/main libqt4-svg arm64 4:4.8.6+git49-gbc62005+dfsg-1ubuntu1 [122 kB] Get:49 http://ftpmaster.internal/ubuntu/ vivid/main libqt4-test arm64 4:4.8.6+git49-gbc62005+dfsg-1ubuntu1 [56.7 kB] Get:50 http://ftpmaster.internal/ubuntu/ vivid/main libunistring0 arm64 0.9.3-5ubuntu3 [255 kB] Get:51 http://ftpmaster.internal/ubuntu/ vivid/main file arm64 1:5.19-1ubuntu1.1 [20.1 kB] Get:52 http://ftpmaster.internal/ubuntu/ vivid/main gettext-base arm64 0.19.2-2ubuntu1 [45.8 kB] Get:53 http://ftpmaster.internal/ubuntu/ vivid/main gettext arm64 0.19.2-2ubuntu1 [792 kB] Get:54 http://ftpmaster.internal/ubuntu/ vivid/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:55 http://ftpmaster.internal/ubuntu/ vivid/main po-debconf all 1.0.16+nmu3 [207 kB] Get:56 http://ftpmaster.internal/ubuntu/ vivid/main dh-apparmor all 2.8.98-0ubuntu2 [11.0 kB] Get:57 http://ftpmaster.internal/ubuntu/ vivid/main debhelper all 9.20141003ubuntu1 [726 kB] Get:58 http://ftpmaster.internal/ubuntu/ vivid/main qtchooser arm64 39-g4717841-3ubuntu1 [20.4 kB] Get:59 http://ftpmaster.internal/ubuntu/ vivid/main qdbus arm64 4:4.8.6+git49-gbc62005+dfsg-1ubuntu1 [28.1 kB] Get:60 http://ftpmaster.internal/ubuntu/ vivid/main libqt4-dbus arm64 4:4.8.6+git49-gbc62005+dfsg-1ubuntu1 [6496 B] Get:61 http://ftpmaster.internal/ubuntu/ vivid/main libqt4-dev-bin arm64 4:4.8.6+git49-gbc62005+dfsg-1ubuntu1 [1488 kB] Get:62 http://ftpmaster.internal/ubuntu/ vivid/main qt4-linguist-tools arm64 4:4.8.6+git49-gbc62005+dfsg-1ubuntu1 [756 kB] Get:63 http://ftpmaster.internal/ubuntu/ vivid/main qt4-qmake arm64 4:4.8.6+git49-gbc62005+dfsg-1ubuntu1 [1151 kB] Get:64 http://ftpmaster.internal/ubuntu/ vivid/main libqt4-dev arm64 4:4.8.6+git49-gbc62005+dfsg-1ubuntu1 [916 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.4 MB in 12s (2120 kB/s) Selecting previously unselected package libexpat1:arm64. (Reading database ... 11406 files and directories currently installed.) Preparing to unpack .../libexpat1_2.1.0-6ubuntu1_arm64.deb ... Unpacking libexpat1:arm64 (2.1.0-6ubuntu1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../libmagic1_1%3a5.19-1ubuntu1.1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.19-1ubuntu1.1) ... Selecting previously unselected package libasprintf0c2:arm64. Preparing to unpack .../libasprintf0c2_0.19.2-2ubuntu1_arm64.deb ... Unpacking libasprintf0c2:arm64 (0.19.2-2ubuntu1) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../libglib2.0-0_2.42.0-2_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.42.0-2) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../libpipeline1_1.4.0-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.4.0-1) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../libxau6_1%3a1.0.8-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../libxdmcp6_1%3a1.1.1-1build1_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.1-1build1) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../libxcb1_1.10-2ubuntu1_arm64.deb ... Unpacking libxcb1:arm64 (1.10-2ubuntu1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../libx11-data_2%3a1.6.2-2ubuntu2_all.deb ... Unpacking libx11-data (2:1.6.2-2ubuntu2) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../libx11-6_2%3a1.6.2-2ubuntu2_arm64.deb ... Unpacking libx11-6:arm64 (2:1.6.2-2ubuntu2) ... Selecting previously unselected package libxext6:arm64. Preparing to unpack .../libxext6_2%3a1.3.3-1_arm64.deb ... Unpacking libxext6:arm64 (2:1.3.3-1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../libxml2_2.9.1+dfsg1-4ubuntu1_arm64.deb ... Unpacking libxml2:arm64 (2.9.1+dfsg1-4ubuntu1) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.2-8_arm64.deb ... Unpacking groff-base (1.22.2-8) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.5ubuntu1_arm64.deb ... Unpacking bsdmainutils (9.0.5ubuntu1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.0.2-2_arm64.deb ... Unpacking man-db (2.7.0.2-2) ... Selecting previously unselected package x11-common. Preparing to unpack .../x11-common_1%3a7.7+7ubuntu2_all.deb ... Unpacking x11-common (1:7.7+7ubuntu2) ... Selecting previously unselected package libice6:arm64. Preparing to unpack .../libice6_2%3a1.0.9-1_arm64.deb ... Unpacking libice6:arm64 (2:1.0.9-1) ... Selecting previously unselected package libsm6:arm64. Preparing to unpack .../libsm6_2%3a1.2.2-1_arm64.deb ... Unpacking libsm6:arm64 (2:1.2.2-1) ... Selecting previously unselected package libxt6:arm64. Preparing to unpack .../libxt6_1%3a1.1.4-1_arm64.deb ... Unpacking libxt6:arm64 (1:1.1.4-1) ... Selecting previously unselected package libaudio2:arm64. Preparing to unpack .../libaudio2_1.9.4-1_arm64.deb ... Unpacking libaudio2:arm64 (1.9.4-1) ... Selecting previously unselected package libcroco3:arm64. Preparing to unpack .../libcroco3_0.6.8-3_arm64.deb ... Unpacking libcroco3:arm64 (0.6.8-3) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../fonts-dejavu-core_2.34-1ubuntu1_all.deb ... Unpacking fonts-dejavu-core (2.34-1ubuntu1) ... Selecting previously unselected package ucf. Preparing to unpack .../archives/ucf_3.0030_all.deb ... Moving old data out of the way Unpacking ucf (3.0030) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../fontconfig-config_2.11.1-0ubuntu3_all.deb ... Unpacking fontconfig-config (2.11.1-0ubuntu3) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../libfreetype6_2.5.2-2ubuntu1_arm64.deb ... Unpacking libfreetype6:arm64 (2.5.2-2ubuntu1) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../libfontconfig1_2.11.1-0ubuntu3_arm64.deb ... Unpacking libfontconfig1:arm64 (2.11.1-0ubuntu3) ... Selecting previously unselected package libjpeg-turbo8:arm64. Preparing to unpack .../libjpeg-turbo8_1.3.0-0ubuntu2_arm64.deb ... Unpacking libjpeg-turbo8:arm64 (1.3.0-0ubuntu2) ... Selecting previously unselected package qtcore4-l10n. Preparing to unpack .../qtcore4-l10n_4%3a4.8.6+git49-gbc62005+dfsg-1ubuntu1_all.deb ... Unpacking qtcore4-l10n (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Selecting previously unselected package libqtcore4:arm64. Preparing to unpack .../libqtcore4_4%3a4.8.6+git49-gbc62005+dfsg-1ubuntu1_arm64.deb ... Unpacking libqtcore4:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Selecting previously unselected package libqt4-xml:arm64. Preparing to unpack .../libqt4-xml_4%3a4.8.6+git49-gbc62005+dfsg-1ubuntu1_arm64.deb ... Unpacking libqt4-xml:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Selecting previously unselected package libqtdbus4:arm64. Preparing to unpack .../libqtdbus4_4%3a4.8.6+git49-gbc62005+dfsg-1ubuntu1_arm64.deb ... Unpacking libqtdbus4:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Selecting previously unselected package libqt4-network:arm64. Preparing to unpack .../libqt4-network_4%3a4.8.6+git49-gbc62005+dfsg-1ubuntu1_arm64.deb ... Unpacking libqt4-network:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Selecting previously unselected package libqt4-script:arm64. Preparing to unpack .../libqt4-script_4%3a4.8.6+git49-gbc62005+dfsg-1ubuntu1_arm64.deb ... Unpacking libqt4-script:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Selecting previously unselected package libqt4-sql:arm64. Preparing to unpack .../libqt4-sql_4%3a4.8.6+git49-gbc62005+dfsg-1ubuntu1_arm64.deb ... Unpacking libqt4-sql:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Selecting previously unselected package libqt4-xmlpatterns:arm64. Preparing to unpack .../libqt4-xmlpatterns_4%3a4.8.6+git49-gbc62005+dfsg-1ubuntu1_arm64.deb ... Unpacking libqt4-xmlpatterns:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../fontconfig_2.11.1-0ubuntu3_arm64.deb ... Unpacking fontconfig (2.11.1-0ubuntu3) ... Selecting previously unselected package libjpeg8:arm64. Preparing to unpack .../libjpeg8_8c-2ubuntu8_arm64.deb ... Unpacking libjpeg8:arm64 (8c-2ubuntu8) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../libjbig0_2.1-3ubuntu1_arm64.deb ... Unpacking libjbig0:arm64 (2.1-3ubuntu1) ... Selecting previously unselected package libtiff5:arm64. Preparing to unpack .../libtiff5_4.0.3-10build1_arm64.deb ... Unpacking libtiff5:arm64 (4.0.3-10build1) ... Selecting previously unselected package libxi6:arm64. Preparing to unpack .../libxi6_2%3a1.7.4-1_arm64.deb ... Unpacking libxi6:arm64 (2:1.7.4-1) ... Selecting previously unselected package libxrender1:arm64. Preparing to unpack .../libxrender1_1%3a0.9.8-1_arm64.deb ... Unpacking libxrender1:arm64 (1:0.9.8-1) ... Selecting previously unselected package libqtgui4:arm64. Preparing to unpack .../libqtgui4_4%3a4.8.6+git49-gbc62005+dfsg-1ubuntu1_arm64.deb ... Unpacking libqtgui4:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Selecting previously unselected package libqt4-declarative:arm64. Preparing to unpack .../libqt4-declarative_4%3a4.8.6+git49-gbc62005+dfsg-1ubuntu1_arm64.deb ... Unpacking libqt4-declarative:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Selecting previously unselected package libqt4-designer:arm64. Preparing to unpack .../libqt4-designer_4%3a4.8.6+git49-gbc62005+dfsg-1ubuntu1_arm64.deb ... Unpacking libqt4-designer:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Selecting previously unselected package libqt4-help:arm64. Preparing to unpack .../libqt4-help_4%3a4.8.6+git49-gbc62005+dfsg-1ubuntu1_arm64.deb ... Unpacking libqt4-help:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Selecting previously unselected package libqt4-qt3support:arm64. Preparing to unpack .../libqt4-qt3support_4%3a4.8.6+git49-gbc62005+dfsg-1ubuntu1_arm64.deb ... Unpacking libqt4-qt3support:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Selecting previously unselected package libqt4-scripttools:arm64. Preparing to unpack .../libqt4-scripttools_4%3a4.8.6+git49-gbc62005+dfsg-1ubuntu1_arm64.deb ... Unpacking libqt4-scripttools:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Selecting previously unselected package libqt4-svg:arm64. Preparing to unpack .../libqt4-svg_4%3a4.8.6+git49-gbc62005+dfsg-1ubuntu1_arm64.deb ... Unpacking libqt4-svg:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Selecting previously unselected package libqt4-test:arm64. Preparing to unpack .../libqt4-test_4%3a4.8.6+git49-gbc62005+dfsg-1ubuntu1_arm64.deb ... Unpacking libqt4-test:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Selecting previously unselected package libunistring0:arm64. Preparing to unpack .../libunistring0_0.9.3-5ubuntu3_arm64.deb ... Unpacking libunistring0:arm64 (0.9.3-5ubuntu3) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.19-1ubuntu1.1_arm64.deb ... Unpacking file (1:5.19-1ubuntu1.1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.2-2ubuntu1_arm64.deb ... Unpacking gettext-base (0.19.2-2ubuntu1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.19.2-2ubuntu1_arm64.deb ... Unpacking gettext (0.19.2-2ubuntu1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ... Unpacking intltool-debian (0.35.0+20060710.1) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.16+nmu3_all.deb ... Unpacking po-debconf (1.0.16+nmu3) ... Selecting previously unselected package dh-apparmor. Preparing to unpack .../dh-apparmor_2.8.98-0ubuntu2_all.deb ... Unpacking dh-apparmor (2.8.98-0ubuntu2) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20141003ubuntu1_all.deb ... Unpacking debhelper (9.20141003ubuntu1) ... Selecting previously unselected package qtchooser. Preparing to unpack .../qtchooser_39-g4717841-3ubuntu1_arm64.deb ... Unpacking qtchooser (39-g4717841-3ubuntu1) ... Selecting previously unselected package qdbus. Preparing to unpack .../qdbus_4%3a4.8.6+git49-gbc62005+dfsg-1ubuntu1_arm64.deb ... Unpacking qdbus (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Selecting previously unselected package libqt4-dbus:arm64. Preparing to unpack .../libqt4-dbus_4%3a4.8.6+git49-gbc62005+dfsg-1ubuntu1_arm64.deb ... Unpacking libqt4-dbus:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Selecting previously unselected package libqt4-dev-bin. Preparing to unpack .../libqt4-dev-bin_4%3a4.8.6+git49-gbc62005+dfsg-1ubuntu1_arm64.deb ... Unpacking libqt4-dev-bin (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Selecting previously unselected package qt4-linguist-tools. Preparing to unpack .../qt4-linguist-tools_4%3a4.8.6+git49-gbc62005+dfsg-1ubuntu1_arm64.deb ... Unpacking qt4-linguist-tools (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Selecting previously unselected package qt4-qmake. Preparing to unpack .../qt4-qmake_4%3a4.8.6+git49-gbc62005+dfsg-1ubuntu1_arm64.deb ... Unpacking qt4-qmake (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Selecting previously unselected package libqt4-dev. Preparing to unpack .../libqt4-dev_4%3a4.8.6+git49-gbc62005+dfsg-1ubuntu1_arm64.deb ... Unpacking libqt4-dev (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Setting up libexpat1:arm64 (2.1.0-6ubuntu1) ... Setting up libmagic1:arm64 (1:5.19-1ubuntu1.1) ... Setting up libasprintf0c2:arm64 (0.19.2-2ubuntu1) ... Setting up libglib2.0-0:arm64 (2.42.0-2) ... No schema files found: doing nothing. Setting up libpipeline1:arm64 (1.4.0-1) ... Setting up libxau6:arm64 (1:1.0.8-1) ... Setting up libxdmcp6:arm64 (1:1.1.1-1build1) ... Setting up libxcb1:arm64 (1.10-2ubuntu1) ... Setting up libx11-data (2:1.6.2-2ubuntu2) ... Setting up libx11-6:arm64 (2:1.6.2-2ubuntu2) ... Setting up libxext6:arm64 (2:1.3.3-1) ... Setting up libxml2:arm64 (2.9.1+dfsg1-4ubuntu1) ... Setting up groff-base (1.22.2-8) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.7.0.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up x11-common (1:7.7+7ubuntu2) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:arm64 (2:1.0.9-1) ... Setting up libsm6:arm64 (2:1.2.2-1) ... Setting up libxt6:arm64 (1:1.1.4-1) ... Setting up libaudio2:arm64 (1.9.4-1) ... Setting up libcroco3:arm64 (0.6.8-3) ... Setting up fonts-dejavu-core (2.34-1ubuntu1) ... Setting up ucf (3.0030) ... Setting up fontconfig-config (2.11.1-0ubuntu3) ... Setting up libfreetype6:arm64 (2.5.2-2ubuntu1) ... Setting up libfontconfig1:arm64 (2.11.1-0ubuntu3) ... Setting up libjpeg-turbo8:arm64 (1.3.0-0ubuntu2) ... Setting up qtcore4-l10n (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Setting up libqtcore4:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Setting up libqt4-xml:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Setting up libqtdbus4:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Setting up libqt4-network:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Setting up libqt4-script:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Setting up libqt4-sql:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Setting up libqt4-xmlpatterns:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Setting up fontconfig (2.11.1-0ubuntu3) ... Regenerating fonts cache... done. Setting up libjpeg8:arm64 (8c-2ubuntu8) ... Setting up libjbig0:arm64 (2.1-3ubuntu1) ... Setting up libtiff5:arm64 (4.0.3-10build1) ... Setting up libxi6:arm64 (2:1.7.4-1) ... Setting up libxrender1:arm64 (1:0.9.8-1) ... Setting up libqt4-test:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Setting up libunistring0:arm64 (0.9.3-5ubuntu3) ... Setting up file (1:5.19-1ubuntu1.1) ... Setting up gettext-base (0.19.2-2ubuntu1) ... Setting up gettext (0.19.2-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu3) ... Setting up dh-apparmor (2.8.98-0ubuntu2) ... Setting up debhelper (9.20141003ubuntu1) ... Setting up qtchooser (39-g4717841-3ubuntu1) ... Setting up qdbus (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Setting up libqt4-dbus:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Setting up qt4-linguist-tools (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Setting up qt4-qmake (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Setting up libqtgui4:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Setting up libqt4-declarative:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Setting up libqt4-designer:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Setting up libqt4-help:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Setting up libqt4-qt3support:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Setting up libqt4-scripttools:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Setting up libqt4-svg:arm64 (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Setting up libqt4-dev-bin (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Setting up libqt4-dev (4:4.8.6+git49-gbc62005+dfsg-1ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.19-10ubuntu2 make_4.0-8 dpkg-dev_1.17.13ubuntu1 gcc-4.9_4.9.1-19ubuntu1 g++-4.9_4.9.1-19ubuntu1 binutils_2.24.90.20141023-1ubuntu1 libstdc++-4.9-dev_4.9.1-19ubuntu1 libstdc++6_4.9.1-19ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Fri Aug 15 22:18:29 2014 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./clustalx_2.1+lgpl-3.dsc dpkg-source: info: extracting clustalx in clustalx-2.1+lgpl dpkg-source: info: unpacking clustalx_2.1+lgpl.orig.tar.gz dpkg-source: info: unpacking clustalx_2.1+lgpl-3.debian.tar.xz dpkg-source: info: applying hardcode-accessory-file-locations.patch dpkg-buildpackage: source package clustalx dpkg-buildpackage: source version 2.1+lgpl-3 dpkg-buildpackage: source distribution unstable dpkg-source --before-build clustalx-2.1+lgpl dpkg-buildpackage: host architecture arm64 /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/build/buildd/clustalx-2.1+lgpl' rm -f moc_* dh_clean make[1]: Leaving directory '/build/buildd/clustalx-2.1+lgpl' debian/rules build-arch dh build-arch dh_testdir -a debian/rules override_dh_auto_configure make[1]: Entering directory '/build/buildd/clustalx-2.1+lgpl' qmake-qt4 make[1]: Leaving directory '/build/buildd/clustalx-2.1+lgpl' dh_auto_build -a make[1]: Entering directory '/build/buildd/clustalx-2.1+lgpl' g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o AlignmentFormatOptions.o AlignmentFormatOptions.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o AlignmentParameters.o AlignmentParameters.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8:0, from AlignmentParameters.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ AlignmentParameters.cpp:48:49: warning: unused parameter 'event' [-Wunused-parameter] void AlignmentParameters::showEvent(QShowEvent* event) ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o AlignmentViewerWidget.o AlignmentViewerWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from AlignmentViewerWidget.cpp:66: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ AlignmentViewerWidget.cpp: In member function 'int AlignmentViewerWidget::makeGapPenaltyData()': AlignmentViewerWidget.cpp:588:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i = 0; i < len && i < gapMask->size(); i++) ^ AlignmentViewerWidget.cpp: In member function 'int AlignmentViewerWidget::makeSecStructData()': AlignmentViewerWidget.cpp:645:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i = 0; i < len && i < _secStructMask->size();i++) ^ AlignmentViewerWidget.cpp:652:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i = 0; i < len && i < ssMask.size(); i++) ^ AlignmentViewerWidget.cpp: At global scope: AlignmentViewerWidget.cpp:781:58: warning: unused parameter 'event' [-Wunused-parameter] void AlignmentViewerWidget::resizeEvent ( QResizeEvent * event ) ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o AlignmentWidget.o AlignmentWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from AlignmentWidget.cpp:49: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ In file included from AlignmentWidget.cpp:49:0: AlignmentWidget.h: In constructor 'AlignmentWidget::AlignmentWidget(int, int, QFont*, QWidget*)': AlignmentWidget.h:170:10: warning: 'AlignmentWidget::blackAndWhite' will be initialized after [-Wreorder] bool blackAndWhite; ^ AlignmentWidget.h:161:27: warning: 'std::vector >* AlignmentWidget::selectedColoredRes' [-Wreorder] std::vector* selectedColoredRes; ^ AlignmentWidget.cpp:65:1: warning: when initialized here [-Wreorder] AlignmentWidget::AlignmentWidget(int boxwidth, int boxsize, QFont* font, QWidget *parent) ^ AlignmentWidget.cpp: In member function 'void AlignmentWidget::calculatePixMaps()': AlignmentWidget.cpp:225:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(unsigned int j = 0; j < lengthLongestSeq; j++) ^ AlignmentWidget.cpp:235:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(code >= 0 && code < conservationPixmaps->size()) ^ AlignmentWidget.cpp:268:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(codeForAA >=0 && codeForAA < lowScoreColoredRes->size()) ^ AlignmentWidget.cpp:280:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(codeForAA >=0 && codeForAA < exceptionalColoredRes->size()) ^ AlignmentWidget.cpp:291:86: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(colMask.getRowSize() > (i - extraRow) && colMask.getColSize() > j) ^ AlignmentWidget.cpp:215:9: warning: unused variable 'codeForSpace' [-Wunused-variable] int codeForSpace = clustalw::userParameters->resIndex( ^ AlignmentWidget.cpp: In member function 'void AlignmentWidget::generateSecStructurePixmaps()': AlignmentWidget.cpp:333:14: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(i < secStructPixmaps->size() && i < secStructInfo.size()) ^ AlignmentWidget.cpp: In member function 'void AlignmentWidget::drawContents(QPainter*, int, int, int, int)': AlignmentWidget.cpp:569:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(selectedRes >= selectedColoredRes->size()) ^ AlignmentWidget.cpp: In member function 'void AlignmentWidget::calcConserveInfo()': AlignmentWidget.cpp:689:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int j = 1; j <= strongGroup.size(); j++) ^ AlignmentWidget.cpp:693:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int j = 1; j <= weakGroup.size(); j++) ^ AlignmentWidget.cpp:700:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if((i + _fRes - 1 < (*alignment)[j].size()) && ^ AlignmentWidget.cpp:701:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] (i + _fRes - 1 < (*alignment)[_fSeq].size())) ^ AlignmentWidget.cpp:725:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int k = 1; k <= strongGroup.size(); k++) ^ AlignmentWidget.cpp:737:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int k = 1; k <= weakGroup.size(); k++) ^ AlignmentWidget.cpp:760:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int k = 1; k <= strongGroup.size(); k++) ^ AlignmentWidget.cpp:771:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int k = 1; k <= weakGroup.size(); k++) ^ AlignmentWidget.cpp: In member function 'void AlignmentWidget::makeColorMask(clustalw::Array2D*, ColorParameters*)': AlignmentWidget.cpp:878:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) ^ AlignmentWidget.cpp: In member function 'QString AlignmentWidget::initConsensus()': AlignmentWidget.cpp:927:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) ^ AlignmentWidget.cpp: In member function 'void AlignmentWidget::generatePixMaps()': AlignmentWidget.cpp:1039:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int j = 0; j < aminoAcid.size(); j++) ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o AlignOutputFileNames.o AlignOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from AlignOutputFileNames.cpp:26: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o BootstrapTreeDialog.o BootstrapTreeDialog.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from BootstrapTreeDialog.cpp:18: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ColorFileXmlParser.o ColorFileXmlParser.cpp ColorFileXmlParser.cpp:74:13: warning: multi-line comment [-Wcomment] // tr("colorrules not found in the parameter file, using\ ^ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from ColorFileXmlParser.cpp:3: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ ColorFileXmlParser.cpp:85:46: warning: unused parameter 'parentItem' [-Wunused-parameter] QTreeWidgetItem *parentItem) ^ ColorFileXmlParser.cpp:138:86: warning: unused parameter 'parentItem' [-Wunused-parameter] void ColorFileXmlParser::parseConsensus(const QDomElement &element, QTreeWidgetItem *parentItem) ^ ColorFileXmlParser.cpp:175:85: warning: unused parameter 'parentItem' [-Wunused-parameter] int ColorFileXmlParser::parseColorRule(const QDomElement &element, QTreeWidgetItem *parentItem) ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ColorParameters.o ColorParameters.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorParameters.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ ColorParameters.cpp: In member function 'QColor ColorParameters::getResidueColor(QChar, QChar)': ColorParameters.cpp:160:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i = 0; i < colorPar.size(); i++) ^ ColorParameters.cpp:174:26: warning: unused variable 'temp' [-Wunused-variable] char temp = colorPar[i].consensusConditionList[j].toAscii(); ^ ColorParameters.cpp:157:10: warning: unused variable 'showRes' [-Wunused-variable] char showRes = res.toAscii(); ^ ColorParameters.cpp:158:10: warning: unused variable 'showCon' [-Wunused-variable] char showCon = consensus.toAscii(); ^ ColorParameters.cpp: In member function 'int ColorParameters::getResidueColorNum(QChar, QChar)': ColorParameters.cpp:197:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i = 0; i < colorPar.size(); i++) ^ ColorParameters.cpp:211:26: warning: unused variable 'temp' [-Wunused-variable] char temp = colorPar[i].consensusConditionList[j].toAscii(); ^ ColorParameters.cpp:194:10: warning: unused variable 'showRes' [-Wunused-variable] char showRes = res.toAscii(); ^ ColorParameters.cpp:195:10: warning: unused variable 'showCon' [-Wunused-variable] char showCon = consensus.toAscii(); ^ ColorParameters.cpp: In member function 'void ColorParameters::printColorInfo()': ColorParameters.cpp:229:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < colors.size(); i++) ^ ColorParameters.cpp: In member function 'int ColorParameters::getIndexOfColor(QColor)': ColorParameters.cpp:238:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i = 0; i < colors.size(); i++) ^ ColorParameters.cpp: In member function 'QColor ColorParameters::getColorFromNum(int)': ColorParameters.cpp:251:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(colorNum > 0 && colorNum - 1 < colorPar.size()) ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ColumnScoreParams.o ColumnScoreParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8:0, from ColumnScoreParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ ColumnScoreParams.cpp:51:47: warning: unused parameter 'event' [-Wunused-parameter] void ColumnScoreParams::showEvent(QShowEvent* event) ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o FileDialog.o FileDialog.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o HardCodedColorScheme.o HardCodedColorScheme.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from HardCodedColorScheme.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o HelpDisplayWidget.o HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from HelpDisplayWidget.cpp:15: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ HelpDisplayWidget.cpp: In member function 'std::string* HelpDisplayWidget::loadHelpInformation(char)': HelpDisplayWidget.cpp:61:13: warning: variable 'number' set but not used [-Wunused-but-set-variable] int i, number, nlines; ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o HistogramWidget.o HistogramWidget.cpp HistogramWidget.cpp: In member function 'void HistogramWidget::drawContents(QPainter*, int, int, int, int)': HistogramWidget.cpp:180:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(column >= 0 && column < arrayOfHeights->size()) ^ HistogramWidget.cpp:198:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(column >= 0 && column < arrayOfHeights->size()) ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o KeyController.o KeyController.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o LowScoringSegParams.o LowScoringSegParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8:0, from LowScoringSegParams.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ LowScoringSegParams.cpp:51:49: warning: unused parameter 'event' [-Wunused-parameter] void LowScoringSegParams::showEvent(QShowEvent* event) ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o main.o main.cpp In file included from main.cpp:21:0: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o mainwindow.o mainwindow.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ mainwindow.cpp:198:40: warning: unused parameter 'event' [-Wunused-parameter] void MainWindow::showEvent(QShowEvent* event) ^ mainwindow.cpp:1454:47: warning: unused parameter 'type' [-Wunused-parameter] void MainWindow::writeViewer1AsPostscript(int type) ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o PairwiseParams.o PairwiseParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8:0, from PairwiseParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ PairwiseParams.cpp:74:44: warning: unused parameter 'event' [-Wunused-parameter] void PairwiseParams::showEvent(QShowEvent* event) ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o PostscriptFileParams.o PostscriptFileParams.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from PostscriptFileParams.h:4, from PostscriptFileParams.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ProteinGapParameters.o ProteinGapParameters.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o PSPrinter.o PSPrinter.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from PSPrinter.cpp:20: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ PSPrinter.cpp: In member function 'void PSPrinter::writePSFile(PostscriptFileParams*)': PSPrinter.cpp:207:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(res.isLetter() && resNumber.size() > i - data->firstSeq) ^ PSPrinter.cpp:307:67: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(res.isLetter() && resNumber.size() > seq) ^ PSPrinter.cpp:421:67: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(res.isLetter() && resNumber.size() > i) ^ PSPrinter.cpp:55:9: warning: unused variable 'err' [-Wunused-variable] int err; ^ PSPrinter.cpp:73:9: warning: unused variable 'gapPos1' [-Wunused-variable] int gapPos1 = clustalw::userParameters->getGapPos1(); // Mark: 22-1-2007 new local ^ PSPrinter.cpp:74:9: warning: unused variable 'gapPos2' [-Wunused-variable] int gapPos2 = clustalw::userParameters->getGapPos2(); // Mark: 22-1-2007 new local ^ PSPrinter.cpp: In member function 'void PSPrinter::printHeaderLine(std::ofstream*, int, int, int)': PSPrinter.cpp:587:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(data->nameHeader.size() > ix) ^ PSPrinter.cpp: In member function 'void PSPrinter::printFooterLine(std::ofstream*, int, int)': PSPrinter.cpp:730:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i = fr; i <= lr && i < ruler.length(); i++) ^ PSPrinter.cpp: In member function 'void PSPrinter::printQualityCurve(std::ofstream*, int, int, int)': PSPrinter.cpp:789:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i = fr + 1; i <= lr && i < data->histogram->size(); i++) ^ PSPrinter.cpp:781:14: warning: unused variable 'psY' [-Wunused-variable] int psX, psY, curveBottom; ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o QTUtility.o QTUtility.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o Resources.o Resources.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o SaveSeqFile.o SaveSeqFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from SaveSeqFile.cpp:23: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o SearchForString.o SearchForString.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o SecStructOptions.o SecStructOptions.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o SeqNameWidget.o SeqNameWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from SeqNameWidget.cpp:59: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ SeqNameWidget.cpp: In member function 'virtual void SeqNameWidget::paintEvent(QPaintEvent*)': SeqNameWidget.cpp:375:11: warning: variable 'redrawRect' set but not used [-Wunused-but-set-variable] QRect redrawRect = event->rect(); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o TreeFormatOptions.o TreeFormatOptions.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o TreeOutputFileNames.o TreeOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from TreeOutputFileNames.cpp:17: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o WritePostscriptFile.o WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from WritePostscriptFile.cpp:24: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o Clustal.o clustalW/Clustal.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/Clustal.h:18, from clustalW/Clustal.cpp:27: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o Help.o clustalW/Help.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o Alignment.o clustalW/alignment/Alignment.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/Alignment.cpp:25: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o AlignmentOutput.o clustalW/alignment/AlignmentOutput.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/AlignmentOutput.h:24, from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ObjectiveScore.o clustalW/alignment/ObjectiveScore.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/ObjectiveScore.h:15, from clustalW/alignment/ObjectiveScore.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o Sequence.o clustalW/alignment/Sequence.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ClustalFileParser.o clustalW/fileInput/ClustalFileParser.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o EMBLFileParser.o clustalW/fileInput/EMBLFileParser.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o FileParser.o clustalW/fileInput/FileParser.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o FileReader.o clustalW/fileInput/FileReader.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/fileInput/FileReader.cpp:29: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o GDEFileParser.o clustalW/fileInput/GDEFileParser.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o InFileStream.o clustalW/fileInput/InFileStream.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o MSFFileParser.o clustalW/fileInput/MSFFileParser.cpp clustalW/fileInput/MSFFileParser.cpp:34:79: warning: unused parameter 'offendingSeq' [-Wunused-parameter] vector MSFFileParser::getSeqRange(int firstSeq, int no, string *offendingSeq) ^ clustalW/fileInput/MSFFileParser.cpp:246:51: warning: unused parameter 'gapPenaltyMask' [-Wunused-parameter] void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ^ clustalW/fileInput/MSFFileParser.cpp:246:81: warning: unused parameter 'secStructMask' [-Wunused-parameter] void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ^ clustalW/fileInput/MSFFileParser.cpp:247:45: warning: unused parameter 'secStructName' [-Wunused-parameter] string& secStructName, int &structPenalties, int length) ^ clustalW/fileInput/MSFFileParser.cpp:247:86: warning: unused parameter 'length' [-Wunused-parameter] string& secStructName, int &structPenalties, int length) ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o PearsonFileParser.o clustalW/fileInput/PearsonFileParser.cpp clustalW/fileInput/PearsonFileParser.cpp:199:60: warning: unused parameter 'offendingSeq' [-Wunused-parameter] Sequence PearsonFileParser::getSeq(int seqNum, string *offendingSeq) ^ clustalW/fileInput/PearsonFileParser.cpp:444:55: warning: unused parameter 'gapPenaltyMask' [-Wunused-parameter] void PearsonFileParser::getSecStructure(vector& gapPenaltyMask, ^ clustalW/fileInput/PearsonFileParser.cpp:445:40: warning: unused parameter 'secStructMask' [-Wunused-parameter] vector& secStructMask, string& secStructName, ^ clustalW/fileInput/PearsonFileParser.cpp:445:63: warning: unused parameter 'secStructName' [-Wunused-parameter] vector& secStructMask, string& secStructName, ^ clustalW/fileInput/PearsonFileParser.cpp:446:53: warning: unused parameter 'length' [-Wunused-parameter] int &structPenalties, int length) ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o PIRFileParser.o clustalW/fileInput/PIRFileParser.cpp clustalW/fileInput/PIRFileParser.cpp:292:51: warning: unused parameter 'gapPenaltyMask' [-Wunused-parameter] void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ^ clustalW/fileInput/PIRFileParser.cpp:292:81: warning: unused parameter 'secStructMask' [-Wunused-parameter] void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ^ clustalW/fileInput/PIRFileParser.cpp:293:45: warning: unused parameter 'secStructName' [-Wunused-parameter] string& secStructName, int &structPenalties, int length) ^ clustalW/fileInput/PIRFileParser.cpp:293:86: warning: unused parameter 'length' [-Wunused-parameter] string& secStructName, int &structPenalties, int length) ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o RSFFileParser.o clustalW/fileInput/RSFFileParser.cpp clustalW/fileInput/RSFFileParser.cpp:240:51: warning: unused parameter 'gapPenaltyMask' [-Wunused-parameter] void RSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ClustalWResources.o clustalW/general/ClustalWResources.cpp clustalW/general/ClustalWResources.cpp: In member function 'std::string clustalw::ClustalWResources::findFile(std::string, clustalw::ClustalWResourcePathType) const': clustalW/general/ClustalWResources.cpp:106:12: warning: array subscript is above array bounds [-Warray-bounds] delim[1] = 0; ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o DebugLog.o clustalW/general/DebugLog.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o OutputFile.o clustalW/general/OutputFile.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o Stats.o clustalW/general/Stats.cpp In file included from clustalW/general/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/general/../alignment/Alignment.h:42, from clustalW/general/Stats.cpp:15: clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o SymMatrix.o clustalW/general/SymMatrix.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o UserParameters.o clustalW/general/UserParameters.cpp clustalW/general/UserParameters.cpp:33:37: warning: unused parameter 'log' [-Wunused-parameter] UserParameters::UserParameters(bool log) ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o Utility.o clustalW/general/Utility.cpp clustalW/general/Utility.cpp: In member function 'bool clustalw::Utility::lineType(char*, const char*)': clustalW/general/Utility.cpp:251:8: warning: variable 'n' set but not used [-Wunused-but-set-variable] int n; ^ clustalW/general/Utility.cpp: At global scope: clustalW/general/Utility.cpp:519:39: warning: unused parameter 'ptrToLabelObj' [-Wunused-parameter] void Utility::setInfoLabelPtr(QLabel* ptrToLabelObj) ^ clustalW/general/Utility.cpp: In member function 'double clustalw::Utility::getReal(const char*, double, double, double)': clustalW/general/Utility.cpp:183:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, stdin); ^ clustalW/general/Utility.cpp: In member function 'int clustalw::Utility::getInt(const char*, int, int, int)': clustalW/general/Utility.cpp:221:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, stdin); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o VectorOutOfRange.o clustalW/general/VectorOutOfRange.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o CommandLineParser.o clustalW/interface/CommandLineParser.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o InteractiveMenu.o clustalW/interface/InteractiveMenu.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ clustalW/interface/InteractiveMenu.cpp: In member function 'void clustalw::InteractiveMenu::doSystem()': clustalW/interface/InteractiveMenu.cpp:1190:29: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system(lin1.c_str()); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o Iteration.o clustalW/multipleAlign/Iteration.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ clustalW/multipleAlign/Iteration.cpp: In member function 'bool clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)': clustalW/multipleAlign/Iteration.cpp:170:9: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count; ^ clustalW/multipleAlign/Iteration.cpp:231:32: warning: ignoring return value of 'char* tmpnam(char*)', declared with attribute warn_unused_result [-Wunused-result] tmpnam (buffer); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o LowScoreSegProfile.o clustalW/multipleAlign/LowScoreSegProfile.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/LowScoreSegProfile.h:13, from clustalW/multipleAlign/LowScoreSegProfile.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o MSA.o clustalW/multipleAlign/MSA.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/MSA.h:10, from clustalW/multipleAlign/MSA.cpp:16: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ clustalW/multipleAlign/MSA.cpp: In member function 'int clustalw::MSA::multiSeqAlign(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, clustalw::AlignmentSteps*, int)': clustalW/multipleAlign/MSA.cpp:340:11: warning: unused variable 'alignmentScore' [-Wunused-variable] int alignmentScore = alnPtr->alignScore(); // ?? check, FS, 2009-05-18 ^ clustalW/multipleAlign/MSA.cpp: At global scope: clustalW/multipleAlign/MSA.cpp:359:35: warning: unused parameter 'phylipName' [-Wunused-parameter] string phylipName) ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o MyersMillerProfileAlign.o clustalW/multipleAlign/MyersMillerProfileAlign.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileAlignAlgorithm.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.cpp:10: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ProfileBase.o clustalW/multipleAlign/ProfileBase.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/ProfileBase.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ clustalW/multipleAlign/ProfileBase.cpp: In member function 'void clustalw::ProfileBase::calcResidueSpecificPen(clustalw::SeqArray*, std::vector*)': clustalW/multipleAlign/ProfileBase.cpp:372:25: warning: comparison is always false due to limited range of data type [-Wtype-limits] if ((ix < 0) || (ix > _maxAA)) ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ProfileStandard.o clustalW/multipleAlign/ProfileStandard.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileStandard.h:9, from clustalW/multipleAlign/ProfileStandard.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ProfileWithSub.o clustalW/multipleAlign/ProfileWithSub.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileWithSub.h:9, from clustalW/multipleAlign/ProfileWithSub.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o FastPairwiseAlign.o clustalW/pairwise/FastPairwiseAlign.cpp In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FastPairwiseAlign.h:9, from clustalW/pairwise/FastPairwiseAlign.cpp:10: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o FullPairwiseAlign.o clustalW/pairwise/FullPairwiseAlign.cpp In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FullPairwiseAlign.h:9, from clustalW/pairwise/FullPairwiseAlign.cpp:9: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o SubMatrix.o clustalW/substitutionMatrix/SubMatrix.cpp In file included from clustalW/substitutionMatrix/SubMatrix.cpp:15:0: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ clustalW/substitutionMatrix/SubMatrix.cpp:1613:35: warning: unused parameter 'alignResidueType' [-Wunused-parameter] void SubMatrix::tempInterface(int alignResidueType, int alignType) ^ clustalW/substitutionMatrix/SubMatrix.cpp:1613:57: warning: unused parameter 'alignType' [-Wunused-parameter] void SubMatrix::tempInterface(int alignResidueType, int alignType) ^ clustalW/substitutionMatrix/SubMatrix.cpp: In member function 'void clustalw::SubMatrix::getQTMatrixForHistogram(int (*)[32])': clustalW/substitutionMatrix/SubMatrix.cpp:1657:9: warning: variable 'maxRes' set but not used [-Wunused-but-set-variable] int maxRes; ^ clustalW/substitutionMatrix/SubMatrix.cpp: In member function 'void clustalw::SubMatrix::getQTMatrixForLowScoreSeg(int (*)[32])': clustalW/substitutionMatrix/SubMatrix.cpp:1717:9: warning: variable 'maxRes' set but not used [-Wunused-but-set-variable] int maxRes; ^ clustalW/substitutionMatrix/SubMatrix.cpp: In member function 'int clustalw::SubMatrix::readMatrixSeries(const char*, clustalw::Matrix&, clustalw::Xref&)': clustalW/substitutionMatrix/SubMatrix.cpp:998:9: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized] int n, llimit, ulimit; ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o AlignmentSteps.o clustalW/tree/AlignmentSteps.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ClusterTree.o clustalW/tree/ClusterTree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ clustalW/tree/ClusterTree.cpp: In member function 'void clustalw::ClusterTree::calcPercIdentity(std::ofstream*, clustalw::Alignment*)': clustalW/tree/ClusterTree.cpp:580:9: warning: variable 'rs' set but not used [-Wunused-but-set-variable] int rs = 0, rl = 0; ^ clustalW/tree/ClusterTree.cpp:580:17: warning: variable 'rl' set but not used [-Wunused-but-set-variable] int rs = 0, rl = 0; ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ClusterTreeOutput.o clustalW/tree/ClusterTreeOutput.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTreeOutput.h:11, from clustalW/tree/ClusterTreeOutput.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ In file included from clustalW/tree/../alignment/../general/clustalw.h:44:0, from clustalW/tree/../alignment/../general/Utility.h:15, from clustalW/tree/../alignment/../general/utils.h:8, from clustalW/tree/../alignment/../general/UserParameters.h:22, from clustalW/tree/../alignment/../general/userparams.h:8, from clustalW/tree/../alignment/Sequence.h:20, from clustalW/tree/../alignment/Alignment.h:41, from clustalW/tree/ClusterTreeOutput.h:11, from clustalW/tree/ClusterTreeOutput.cpp:9: clustalW/tree/../alignment/../general/SymMatrix.h: In member function 'void clustalw::ClusterTreeOutput::printPhylipTree(clustalw::PhyloTree*, std::ofstream*, clustalw::Alignment*, clustalw::DistMatrix*, std::vector*)': clustalW/tree/../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] if (_i > _j) ^ clustalW/tree/../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] if (_i > _j) ^ clustalW/tree/../alignment/../general/SymMatrix.h: In member function 'void clustalw::ClusterTreeOutput::printNexusTree(clustalw::PhyloTree*, std::ofstream*, clustalw::Alignment*, clustalw::DistMatrix*, std::vector*)': clustalW/tree/../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] if (_i > _j) ^ clustalW/tree/../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] if (_i > _j) ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o NJTree.o clustalW/tree/NJTree.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o RandomGenerator.o clustalW/tree/RandomGenerator.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o Tree.o clustalW/tree/Tree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o TreeInterface.o clustalW/tree/TreeInterface.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/TreeInterface.h:19, from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o UnRootedClusterTree.o clustalW/tree/UnRootedClusterTree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ In file included from clustalW/tree/../alignment/../general/clustalw.h:44:0, from clustalW/tree/../alignment/../general/Utility.h:15, from clustalW/tree/../alignment/../general/utils.h:8, from clustalW/tree/../alignment/../general/UserParameters.h:22, from clustalW/tree/../alignment/../general/userparams.h:8, from clustalW/tree/../alignment/Sequence.h:20, from clustalW/tree/../alignment/Alignment.h:41, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../alignment/../general/SymMatrix.h: In member function 'void clustalw::UnRootedClusterTree::treeFromDistMatrix(clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string&)': clustalW/tree/../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] if (_i > _j) ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o Node.o clustalW/tree/UPGMA/Node.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o RootedClusterTree.o clustalW/tree/UPGMA/RootedClusterTree.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/../ClusterTree.h:20, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ In file included from clustalW/tree/UPGMA/../../alignment/../general/clustalw.h:44:0, from clustalW/tree/UPGMA/../../alignment/../general/Utility.h:15, from clustalW/tree/UPGMA/../../alignment/../general/utils.h:8, from clustalW/tree/UPGMA/../../alignment/../general/UserParameters.h:22, from clustalW/tree/UPGMA/../../alignment/../general/userparams.h:8, from clustalW/tree/UPGMA/../../alignment/Sequence.h:20, from clustalW/tree/UPGMA/../../alignment/Alignment.h:41, from clustalW/tree/UPGMA/../ClusterTree.h:20, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h: In member function 'std::auto_ptr clustalw::RootedClusterTree::treeFromDistMatrix(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string&)': clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] if (_i > _j) ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o RootedGuideTree.o clustalW/tree/UPGMA/RootedGuideTree.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedGuideTree.cpp:10: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o RootedTreeOutput.o clustalW/tree/UPGMA/RootedTreeOutput.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedTreeOutput.h:15, from clustalW/tree/UPGMA/RootedTreeOutput.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ In file included from clustalW/tree/UPGMA/../../alignment/../general/clustalw.h:44:0, from clustalW/tree/UPGMA/../../alignment/../general/Utility.h:15, from clustalW/tree/UPGMA/../../alignment/../general/utils.h:8, from clustalW/tree/UPGMA/../../alignment/../general/UserParameters.h:22, from clustalW/tree/UPGMA/../../alignment/../general/userparams.h:8, from clustalW/tree/UPGMA/../../alignment/Sequence.h:20, from clustalW/tree/UPGMA/../../alignment/Alignment.h:41, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedTreeOutput.h:15, from clustalW/tree/UPGMA/RootedTreeOutput.cpp:9: clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h: In member function 'void clustalw::RootedTreeOutput::printPhylipTree(clustalw::RootedGuideTree*, std::ofstream*, clustalw::Alignment*, clustalw::DistMatrix*)': clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] if (_i > _j) ^ clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] if (_i > _j) ^ clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h: In member function 'void clustalw::RootedTreeOutput::printNexusTree(clustalw::RootedGuideTree*, std::ofstream*, clustalw::Alignment*, clustalw::DistMatrix*)': clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] if (_i > _j) ^ clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] if (_i > _j) ^ g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o UPGMAAlgorithm.o clustalW/tree/UPGMA/UPGMAAlgorithm.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:8, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. AlignmentFormatOptions.h -o moc_AlignmentFormatOptions.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_AlignmentFormatOptions.o moc_AlignmentFormatOptions.cpp /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. AlignmentParameters.h -o moc_AlignmentParameters.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_AlignmentParameters.o moc_AlignmentParameters.cpp /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. AlignmentViewerWidget.h -o moc_AlignmentViewerWidget.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_AlignmentViewerWidget.o moc_AlignmentViewerWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from moc_AlignmentViewerWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. AlignmentWidget.h -o moc_AlignmentWidget.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_AlignmentWidget.o moc_AlignmentWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from moc_AlignmentWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. AlignOutputFileNames.h -o moc_AlignOutputFileNames.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_AlignOutputFileNames.o moc_AlignOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from moc_AlignOutputFileNames.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. BootstrapTreeDialog.h -o moc_BootstrapTreeDialog.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_BootstrapTreeDialog.o moc_BootstrapTreeDialog.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from moc_BootstrapTreeDialog.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. ColorFileXmlParser.h -o moc_ColorFileXmlParser.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_ColorFileXmlParser.o moc_ColorFileXmlParser.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from moc_ColorFileXmlParser.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. ColumnScoreParams.h -o moc_ColumnScoreParams.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_ColumnScoreParams.o moc_ColumnScoreParams.cpp /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. FileDialog.h -o moc_FileDialog.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_FileDialog.o moc_FileDialog.cpp /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. HelpDisplayWidget.h -o moc_HelpDisplayWidget.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_HelpDisplayWidget.o moc_HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from moc_HelpDisplayWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. HistogramWidget.h -o moc_HistogramWidget.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_HistogramWidget.o moc_HistogramWidget.cpp /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. LowScoringSegParams.h -o moc_LowScoringSegParams.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_LowScoringSegParams.o moc_LowScoringSegParams.cpp /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. mainwindow.h -o moc_mainwindow.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_mainwindow.o moc_mainwindow.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. PairwiseParams.h -o moc_PairwiseParams.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_PairwiseParams.o moc_PairwiseParams.cpp /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. ProteinGapParameters.h -o moc_ProteinGapParameters.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_ProteinGapParameters.o moc_ProteinGapParameters.cpp /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. PSPrinter.h -o moc_PSPrinter.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_PSPrinter.o moc_PSPrinter.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from moc_PSPrinter.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. SaveSeqFile.h -o moc_SaveSeqFile.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_SaveSeqFile.o moc_SaveSeqFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from moc_SaveSeqFile.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. SearchForString.h -o moc_SearchForString.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_SearchForString.o moc_SearchForString.cpp /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. SecStructOptions.h -o moc_SecStructOptions.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_SecStructOptions.o moc_SecStructOptions.cpp /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. SeqNameWidget.h -o moc_SeqNameWidget.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_SeqNameWidget.o moc_SeqNameWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from moc_SeqNameWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. TreeFormatOptions.h -o moc_TreeFormatOptions.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_TreeFormatOptions.o moc_TreeFormatOptions.cpp /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. TreeOutputFileNames.h -o moc_TreeOutputFileNames.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_TreeOutputFileNames.o moc_TreeOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from moc_TreeOutputFileNames.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ /usr/lib/aarch64-linux-gnu/qt4/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. WritePostscriptFile.h -o moc_WritePostscriptFile.cpp g++ -c -fpermissive -pipe -O2 -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++-aarch64 -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_WritePostscriptFile.o moc_WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8:0, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from moc_WritePostscriptFile.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -Wl,-O1 -o clustalx AlignmentFormatOptions.o AlignmentParameters.o AlignmentViewerWidget.o AlignmentWidget.o AlignOutputFileNames.o BootstrapTreeDialog.o ColorFileXmlParser.o ColorParameters.o ColumnScoreParams.o FileDialog.o HardCodedColorScheme.o HelpDisplayWidget.o HistogramWidget.o KeyController.o LowScoringSegParams.o main.o mainwindow.o PairwiseParams.o PostscriptFileParams.o ProteinGapParameters.o PSPrinter.o QTUtility.o Resources.o SaveSeqFile.o SearchForString.o SecStructOptions.o SeqNameWidget.o TreeFormatOptions.o TreeOutputFileNames.o WritePostscriptFile.o Clustal.o Help.o Alignment.o AlignmentOutput.o ObjectiveScore.o Sequence.o ClustalFileParser.o EMBLFileParser.o FileParser.o FileReader.o GDEFileParser.o InFileStream.o MSFFileParser.o PearsonFileParser.o PIRFileParser.o RSFFileParser.o ClustalWResources.o DebugLog.o OutputFile.o Stats.o SymMatrix.o UserParameters.o Utility.o VectorOutOfRange.o CommandLineParser.o InteractiveMenu.o Iteration.o LowScoreSegProfile.o MSA.o MyersMillerProfileAlign.o ProfileBase.o ProfileStandard.o ProfileWithSub.o FastPairwiseAlign.o FullPairwiseAlign.o SubMatrix.o AlignmentSteps.o ClusterTree.o ClusterTreeOutput.o NJTree.o RandomGenerator.o Tree.o TreeInterface.o UnRootedClusterTree.o Node.o RootedClusterTree.o RootedGuideTree.o RootedTreeOutput.o UPGMAAlgorithm.o moc_AlignmentFormatOptions.o moc_AlignmentParameters.o moc_AlignmentViewerWidget.o moc_AlignmentWidget.o moc_AlignOutputFileNames.o moc_BootstrapTreeDialog.o moc_ColorFileXmlParser.o moc_ColumnScoreParams.o moc_FileDialog.o moc_HelpDisplayWidget.o moc_HistogramWidget.o moc_LowScoringSegParams.o moc_mainwindow.o moc_PairwiseParams.o moc_ProteinGapParameters.o moc_PSPrinter.o moc_SaveSeqFile.o moc_SearchForString.o moc_SecStructOptions.o moc_SeqNameWidget.o moc_TreeFormatOptions.o moc_TreeOutputFileNames.o moc_WritePostscriptFile.o -L/usr/lib/aarch64-linux-gnu -lQtXml -lQtGui -lQtCore -lpthread Iteration.o: In function `clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)': Iteration.cpp:(.text+0x7a8): warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[1]: Leaving directory '/build/buildd/clustalx-2.1+lgpl' dh_auto_test -a /usr/bin/fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/buildd/clustalx-2.1+lgpl' dh_installchangelogs debian/CHANGELOG.upstream make[1]: Leaving directory '/build/buildd/clustalx-2.1+lgpl' dh_installman -a dh_installmenu -a dh_installmime -a dh_perl -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform arm64: clustalx dh_strip debug symbol extraction: packages to act on: clustalx dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 clustalx has no unstripped objects, ignoring find: `/build/buildd/clustalx-2.1+lgpl/debian/clustalx-dbgsym': No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /build/buildd/clustalx-2.1+lgpl/debian/clustalx-dbgsym and no dbgdepends, ignoring dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 121 pkgstriptranslations: processing clustalx (in debian/clustalx); do_strip: , oemstrip: debian/clustalx/usr/share/applications/clustalx.desktop: does not have gettext domain, not stripping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clustalx/DEBIAN/control, package clustalx, directory debian/clustalx .. removing usr/share/doc/clustalx/changelog.gz pkgstripfiles: Truncating usr/share/doc/clustalx/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package clustalx took 0 s dpkg-deb: warning: 'debian/clustalx/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `clustalx' in `../clustalx_2.1+lgpl-3_arm64.deb'. dpkg-genchanges -B -mUbuntu Build Daemon >../clustalx_2.1+lgpl-3_arm64.changes dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build clustalx-2.1+lgpl dpkg-buildpackage: binary-only upload (no source included) ****************************************************************************** Build finished at 20141027-1954 chroot-autobuild/build/buildd/clustalx_2.1+lgpl-3_arm64.deb: new debian package, version 2.0. size 410236 bytes: control archive=1692 bytes. 1574 bytes, 28 lines control 862 bytes, 13 lines md5sums 185 bytes, 7 lines * postinst #!/bin/sh 160 bytes, 5 lines * postrm #!/bin/sh Package: clustalx Version: 2.1+lgpl-3 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1360 Depends: libc6 (>= 2.17), libgcc1 (>= 1:4.7), libqt4-xml (>= 4:4.5.3), libqtcore4 (>= 4:4.6.1), libqtgui4 (>= 4:4.5.3), libstdc++6 (>= 4.9) Suggests: clustalw, texlive-latex-extra, boxshade Section: science Priority: optional Homepage: http://www.clustal.org/clustal2/ Description: Multiple alignment of nucleic acid and protein sequences (graphical interface) This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade. . The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment. . An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted. chroot-autobuild/build/buildd/clustalx_2.1+lgpl-3_arm64.deb: drwxr-xr-x root/root 0 2014-10-27 19:53 ./ drwxr-xr-x root/root 0 2014-10-27 19:53 ./usr/ drwxr-xr-x root/root 0 2014-10-27 19:53 ./usr/lib/ drwxr-xr-x root/root 0 2014-10-27 19:53 ./usr/lib/mime/ drwxr-xr-x root/root 0 2014-10-27 19:53 ./usr/lib/mime/packages/ -rw-r--r-- root/root 114 2014-08-15 22:14 ./usr/lib/mime/packages/clustalx drwxr-xr-x root/root 0 2014-10-27 19:53 ./usr/bin/ -rwxr-xr-x root/root 1233360 2014-10-27 19:53 ./usr/bin/clustalx drwxr-xr-x root/root 0 2014-10-27 19:53 ./usr/share/ drwxr-xr-x root/root 0 2014-10-27 19:53 ./usr/share/man/ drwxr-xr-x root/root 0 2014-10-27 19:53 ./usr/share/man/man1/ -rw-r--r-- root/root 797 2014-10-27 19:53 ./usr/share/man/man1/clustalx.1.gz drwxr-xr-x root/root 0 2014-10-27 19:53 ./usr/share/menu/ -rw-r--r-- root/root 163 2014-08-15 22:14 ./usr/share/menu/clustalx drwxr-xr-x root/root 0 2014-10-27 19:53 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-10-27 19:54 ./usr/share/doc/clustalx/ -rw-r--r-- root/root 1794 2014-08-15 22:14 ./usr/share/doc/clustalx/copyright -rw-r--r-- root/root 2600 2014-10-27 19:54 ./usr/share/doc/clustalx/changelog.Debian.gz -rw-r--r-- root/root 410 2014-08-15 22:14 ./usr/share/doc/clustalx/README.Debian drwxr-xr-x root/root 0 2014-10-27 19:53 ./usr/share/clustalx/ -rw-r--r-- root/root 847 2010-11-17 10:12 ./usr/share/clustalx/coldna.xml -rw-r--r-- root/root 1276 2010-11-17 10:12 ./usr/share/clustalx/colprint.xml -rw-r--r-- root/root 69428 2010-11-17 10:12 ./usr/share/clustalx/clustalx.hlp -rw-r--r-- root/root 5047 2010-11-17 10:12 ./usr/share/clustalx/colprot.xml drwxr-xr-x root/root 0 2014-10-27 19:53 ./usr/share/mime/ drwxr-xr-x root/root 0 2014-10-27 19:53 ./usr/share/mime/packages/ -rw-r--r-- root/root 513 2014-08-15 22:14 ./usr/share/mime/packages/clustalx.xml drwxr-xr-x root/root 0 2014-10-27 19:53 ./usr/share/applications/ -rw-r--r-- root/root 873 2014-08-15 22:14 ./usr/share/applications/clustalx.desktop clustalx_2.1+lgpl-3_arm64.changes: Format: 1.8 Date: Sat, 16 Aug 2014 00:11:01 +0200 Source: clustalx Binary: clustalx Architecture: arm64 Version: 2.1+lgpl-3 Distribution: vivid-proposed Urgency: medium Maintainer: Ubuntu Build Daemon Changed-By: Andreas Tille Description: clustalx - Multiple alignment of nucleic acid and protein sequences (graphic Changes: clustalx (2.1+lgpl-3) unstable; urgency=medium . * d/control: - cme fix dpkg-control - debhelper 9 Checksums-Sha1: 3dc63f5369521df237cc5fbb2ee0f8b02c04743c 410236 clustalx_2.1+lgpl-3_arm64.deb Checksums-Sha256: fefc03fd3accb4218002340fed32d71d08845a7e61e104515c46afae99157a81 410236 clustalx_2.1+lgpl-3_arm64.deb Files: ff94e199a90ae0d562199ecc67c81218 410236 science optional clustalx_2.1+lgpl-3_arm64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20141027-1954 Build needed 00:04:17, 9608k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-6487108'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-6487108/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-6487108'] Unmounting chroot for build PACKAGEBUILD-6487108... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-6487108'] Removing build PACKAGEBUILD-6487108