https://launchpad.net/ubuntu/+source/clonalframe/1.2-10build1/+build/19100888 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lcy01-102 5.4.0-21-generic #25-Ubuntu SMP Tue Mar 31 01:57:06 UTC 2020 riscv64 Buildd toolchain package versions: launchpad-buildd_188 python-lpbuildd_188 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu1 dpkg-dev_1.19.7ubuntu2 python-debian_0.1.36build1. Syncing the system clock with the buildd NTP service... 3 Apr 23:03:02 ntpdate[231104]: adjust time server 10.211.37.1 offset -0.009857 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19100888 --image-type chroot /home/buildd/filecache-default/88ad86cb2b525f1abddded96eadf8014548f7845 Creating target for build PACKAGEBUILD-19100888 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19100888 Starting target for build PACKAGEBUILD-19100888 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19100888 'deb http://ftpmaster.internal/ubuntu focal main universe' Overriding sources.list in build-PACKAGEBUILD-19100888 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19100888 Updating target for build PACKAGEBUILD-19100888 Ign:1 http://archive-team.internal/bootstrap/riscv64 focal InRelease Get:2 http://ftpmaster.internal/ubuntu focal InRelease [265 kB] Get:3 http://archive-team.internal/bootstrap/riscv64 focal Release [757 B] Ign:4 http://archive-team.internal/bootstrap/riscv64 focal Release.gpg Get:5 http://ftpmaster.internal/ubuntu focal-proposed InRelease [265 kB] Get:6 http://archive-team.internal/bootstrap/riscv64 focal/main riscv64 Packages [1000 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main riscv64 Packages [694 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main Translation-en [501 kB] Get:9 http://ftpmaster.internal/ubuntu focal/universe riscv64 Packages [5395 kB] Get:10 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5127 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 Packages [20.7 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [22.9 kB] Get:13 http://ftpmaster.internal/ubuntu focal-proposed/universe riscv64 Packages [87.3 kB] Get:14 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [100 kB] Get:15 http://ftpmaster.internal/ubuntu focal-proposed/multiverse Translation-en [8856 B] Fetched 13.5 MB in 26s (511 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: coreutils liblocale-gettext-perl libperl5.30 libtext-charwidth-perl libtext-iconv-perl perl-base 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 6037 kB of archives. After this operation, 6144 B of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main riscv64 coreutils riscv64 8.30-3ubuntu2 [1158 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main riscv64 perl-base riscv64 5.30.0-9build1 [1419 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main riscv64 liblocale-gettext-perl riscv64 1.07-4 [16.5 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main riscv64 libtext-charwidth-perl riscv64 0.04-10 [9460 B] Get:5 http://ftpmaster.internal/ubuntu focal/main riscv64 libtext-iconv-perl riscv64 1.7-7 [13.2 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main riscv64 libperl5.30 riscv64 5.30.0-9build1 [3422 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6037 kB in 2s (2682 kB/s) (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../coreutils_8.30-3ubuntu2_riscv64.deb ... Unpacking coreutils (8.30-3ubuntu2) over (8.30-3ubuntu2) ... Setting up coreutils (8.30-3ubuntu2) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../perl-base_5.30.0-9build1_riscv64.deb ... Unpacking perl-base (5.30.0-9build1) over (5.30.0-9build1) ... Setting up perl-base (5.30.0-9build1) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-4_riscv64.deb ... Unpacking liblocale-gettext-perl (1.07-4) over (1.07-4) ... Preparing to unpack .../libtext-charwidth-perl_0.04-10_riscv64.deb ... Unpacking libtext-charwidth-perl (0.04-10) over (0.04-10) ... Preparing to unpack .../libtext-iconv-perl_1.7-7_riscv64.deb ... Unpacking libtext-iconv-perl (1.7-7) over (1.7-7) ... Preparing to unpack .../libperl5.30_5.30.0-9build1_riscv64.deb ... Unpacking libperl5.30:riscv64 (5.30.0-9build1) over (5.30.0-9build1) ... Setting up libtext-iconv-perl (1.7-7) ... Setting up libtext-charwidth-perl (0.04-10) ... Setting up libperl5.30:riscv64 (5.30.0-9build1) ... Setting up liblocale-gettext-perl (1.07-4) ... Processing triggers for libc-bin (2.31-0ubuntu6~riscv64.1) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19100888 riscv64 focal -c chroot:build-PACKAGEBUILD-19100888 --arch=riscv64 --dist=focal --nolog clonalframe_1.2-10build1.dsc Initiating build PACKAGEBUILD-19100888 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-21-generic #25-Ubuntu SMP Tue Mar 31 01:57:06 UTC 2020 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lcy01-102 +==============================================================================+ | clonalframe 1.2-10build1 (riscv64) Fri, 03 Apr 2020 23:06:43 +0000 | +==============================================================================+ Package: clonalframe Version: 1.2-10build1 Source Version: 1.2-10build1 Distribution: focal Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19100888/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/clonalframe-ECfTI1/resolver-hr1EXX' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clonalframe_1.2-10build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/clonalframe-ECfTI1/clonalframe-1.2' with '<>' I: NOTICE: Log filtering will replace 'build/clonalframe-ECfTI1' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), qt5-qmake, libgsl-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 12), qt5-qmake, libgsl-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [387 B] Get:5 copy:/<>/apt_archive ./ Packages [468 B] Fetched 1812 B in 1s (3043 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgpm2 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl23 libgslcblas0 libicu66 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf qt5-qmake qt5-qmake-bin qtchooser tzdata Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl23 libgslcblas0 libicu66 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf qt5-qmake qt5-qmake-bin qtchooser sbuild-build-depends-main-dummy tzdata 0 upgraded, 41 newly installed, 0 to remove and 0 not upgraded. Need to get 21.6 MB of archives. After this operation, 100 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [892 B] Get:2 http://ftpmaster.internal/ubuntu focal/main riscv64 libbsd0 riscv64 0.10.0-1 [42.0 kB] Get:3 http://archive-team.internal/bootstrap/riscv64 focal/main riscv64 libglib2.0-0 riscv64 2.64.1-1 [1125 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main riscv64 bsdmainutils riscv64 11.1.2ubuntu3 [176 kB] Get:5 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libuchardet0 riscv64 0.0.6-3build1 [64.9 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main riscv64 groff-base riscv64 1.22.4-4build1 [816 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main riscv64 libpipeline1 riscv64 1.5.2-2build1 [23.9 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main riscv64 man-db riscv64 2.9.1-1 [1075 kB] Get:9 http://archive-team.internal/bootstrap/riscv64 focal/main riscv64 qt5-qmake-bin riscv64 5.12.5+dfsg-9build1 [981 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main riscv64 libmagic-mgc riscv64 1:5.38-4 [218 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main riscv64 libmagic1 riscv64 1:5.38-4 [70.5 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main riscv64 file riscv64 1:5.38-4 [22.5 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main riscv64 libelf1 riscv64 0.176-1.1build1 [41.8 kB] Get:14 http://archive-team.internal/bootstrap/riscv64 focal/main riscv64 qtchooser riscv64 66-2build1 [23.3 kB] Get:15 http://archive-team.internal/bootstrap/riscv64 focal/main riscv64 qt5-qmake riscv64 5.12.5+dfsg-9build1 [189 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main riscv64 tzdata all 2019c-3ubuntu1 [294 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main riscv64 libicu66 riscv64 66.1-2ubuntu2 [8406 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main riscv64 libxml2 riscv64 2.9.10+dfsg-4build1 [558 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main riscv64 gettext-base riscv64 0.19.8.1-10build1 [47.4 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main riscv64 libsigsegv2 riscv64 2.12-2 [13.0 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main riscv64 m4 riscv64 1.4.18-4 [188 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main riscv64 autoconf all 2.69-11.1 [321 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main riscv64 autotools-dev all 20180224.1 [39.6 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main riscv64 automake all 1:1.16.1-4ubuntu6 [522 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main riscv64 autopoint all 0.19.8.1-10build1 [412 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main riscv64 libtool all 2.4.6-13 [161 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main riscv64 dh-autoreconf all 19 [16.1 kB] Get:28 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libdebhelper-perl all 12.10ubuntu1 [62.1 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main riscv64 libarchive-zip-perl all 1.67-2 [90.5 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main riscv64 libsub-override-perl all 0.09-2 [9532 B] Get:31 http://ftpmaster.internal/ubuntu focal/main riscv64 libfile-stripnondeterminism-perl all 1.6.3-2 [16.0 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main riscv64 dh-strip-nondeterminism all 1.6.3-2 [5228 B] Get:33 http://ftpmaster.internal/ubuntu focal/main riscv64 dwz riscv64 0.13-5 [147 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main riscv64 libcroco3 riscv64 0.6.13-1 [71.1 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main riscv64 gettext riscv64 0.19.8.1-10build1 [844 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main riscv64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main riscv64 po-debconf all 1.0.21 [233 kB] Get:38 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 debhelper all 12.10ubuntu1 [877 kB] Get:39 http://ftpmaster.internal/ubuntu focal-proposed/universe riscv64 libgslcblas0 riscv64 2.5+dfsg-6build1 [69.1 kB] Get:40 http://ftpmaster.internal/ubuntu focal-proposed/universe riscv64 libgsl23 riscv64 2.5+dfsg-6build1 [818 kB] Get:41 http://ftpmaster.internal/ubuntu focal-proposed/universe riscv64 libgsl-dev riscv64 2.5+dfsg-6build1 [2516 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 21.6 MB in 4s (5474 kB/s) Selecting previously unselected package libbsd0:riscv64. (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_riscv64.deb ... Unpacking libbsd0:riscv64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu3_riscv64.deb ... Unpacking bsdmainutils (11.1.2ubuntu3) ... Selecting previously unselected package libuchardet0:riscv64. Preparing to unpack .../02-libuchardet0_0.0.6-3build1_riscv64.deb ... Unpacking libuchardet0:riscv64 (0.0.6-3build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-4build1_riscv64.deb ... Unpacking groff-base (1.22.4-4build1) ... Selecting previously unselected package libpipeline1:riscv64. Preparing to unpack .../04-libpipeline1_1.5.2-2build1_riscv64.deb ... Unpacking libpipeline1:riscv64 (1.5.2-2build1) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.1-1_riscv64.deb ... Unpacking man-db (2.9.1-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.38-4_riscv64.deb ... Unpacking libmagic-mgc (1:5.38-4) ... Selecting previously unselected package libmagic1:riscv64. Preparing to unpack .../07-libmagic1_1%3a5.38-4_riscv64.deb ... Unpacking libmagic1:riscv64 (1:5.38-4) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.38-4_riscv64.deb ... Unpacking file (1:5.38-4) ... Selecting previously unselected package libelf1:riscv64. Preparing to unpack .../09-libelf1_0.176-1.1build1_riscv64.deb ... Unpacking libelf1:riscv64 (0.176-1.1build1) ... Selecting previously unselected package libglib2.0-0:riscv64. Preparing to unpack .../10-libglib2.0-0_2.64.1-1_riscv64.deb ... Unpacking libglib2.0-0:riscv64 (2.64.1-1) ... Selecting previously unselected package tzdata. Preparing to unpack .../11-tzdata_2019c-3ubuntu1_all.deb ... Unpacking tzdata (2019c-3ubuntu1) ... 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Unpacking libcroco3:riscv64 (0.6.13-1) ... Selecting previously unselected package gettext. Preparing to unpack .../30-gettext_0.19.8.1-10build1_riscv64.deb ... Unpacking gettext (0.19.8.1-10build1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../31-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../32-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../33-debhelper_12.10ubuntu1_all.deb ... Unpacking debhelper (12.10ubuntu1) ... Selecting previously unselected package libgslcblas0:riscv64. Preparing to unpack .../34-libgslcblas0_2.5+dfsg-6build1_riscv64.deb ... Unpacking libgslcblas0:riscv64 (2.5+dfsg-6build1) ... Selecting previously unselected package libgsl23:riscv64. Preparing to unpack .../35-libgsl23_2.5+dfsg-6build1_riscv64.deb ... Unpacking libgsl23:riscv64 (2.5+dfsg-6build1) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../36-libgsl-dev_2.5+dfsg-6build1_riscv64.deb ... Unpacking libgsl-dev (2.5+dfsg-6build1) ... Selecting previously unselected package qt5-qmake-bin. Preparing to unpack .../37-qt5-qmake-bin_5.12.5+dfsg-9build1_riscv64.deb ... Unpacking qt5-qmake-bin (5.12.5+dfsg-9build1) ... Selecting previously unselected package qtchooser. Preparing to unpack .../38-qtchooser_66-2build1_riscv64.deb ... Unpacking qtchooser (66-2build1) ... Selecting previously unselected package qt5-qmake:riscv64. Preparing to unpack .../39-qt5-qmake_5.12.5+dfsg-9build1_riscv64.deb ... Unpacking qt5-qmake:riscv64 (5.12.5+dfsg-9build1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../40-sbuild-build-depends-main-dummy_0.invalid.0_riscv64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:riscv64 (1.5.2-2build1) ... Setting up libgslcblas0:riscv64 (2.5+dfsg-6build1) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.67-2) ... Setting up libglib2.0-0:riscv64 (2.64.1-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.10ubuntu1) ... Setting up libmagic1:riscv64 (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up file (1:5.38-4) ... Setting up tzdata (2019c-3ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Apr 3 23:08:58 UTC 2020. Universal Time is now: Fri Apr 3 23:08:58 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20180224.1) ... Setting up qt5-qmake-bin (5.12.5+dfsg-9build1) ... Setting up libgsl23:riscv64 (2.5+dfsg-6build1) ... Setting up libsigsegv2:riscv64 (2.12-2) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libuchardet0:riscv64 (0.0.6-3build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:riscv64 (0.10.0-1) ... Setting up libelf1:riscv64 (0.176-1.1build1) ... Setting up qtchooser (66-2build1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libgsl-dev (2.5+dfsg-6build1) ... Setting up qt5-qmake:riscv64 (5.12.5+dfsg-9build1) ... Setting up libtool (2.4.6-13) ... Setting up libicu66:riscv64 (66.1-2ubuntu2) ... Setting up m4 (1.4.18-4) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4build1) ... Setting up libxml2:riscv64 (2.9.10+dfsg-4build1) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:riscv64 (0.6.13-1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.10ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu6~riscv64.1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-21-generic #25-Ubuntu SMP Tue Mar 31 01:57:06 UTC 2020 riscv64 (riscv64) Toolchain package versions: binutils_2.34-5ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-8ubuntu1 gcc-9_9.3.0-8ubuntu1 libc6-dev_2.31-0ubuntu6~riscv64.1 libstdc++-9-dev_9.3.0-8ubuntu1 libstdc++6_10-20200324-1ubuntu1 linux-libc-dev_5.4.0-21.25 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1build1 apt_2.0.1 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu4 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-5ubuntu1 binutils-common_2.34-5ubuntu1 binutils-riscv64-linux-gnu_2.34-5ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.34-0.1ubuntu8 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:9.3.0-1ubuntu2 cpp-9_9.3.0-8ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.10ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7ubuntu3 dpkg-dev_1.19.7ubuntu3 dwz_0.13-5 e2fsprogs_1.45.5-2ubuntu1 fakeroot_1.24-1 file_1:5.38-4 findutils_4.7.0-1ubuntu1 g++_4:9.3.0-1ubuntu2 g++-9_9.3.0-8ubuntu1 gcc_4:9.3.0-1ubuntu2 gcc-10-base_10-20200324-1ubuntu1 gcc-8-base_8.4.0-3ubuntu1 gcc-9_9.3.0-8ubuntu1 gcc-9-base_9.3.0-8ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.19-3ubuntu2 gpg-agent_2.2.19-3ubuntu2 gpgconf_2.2.19-3ubuntu2 gpgv_2.2.19-3ubuntu2 grep_3.4-1 groff-base_1.22.4-4build1 gzip_1.10-0ubuntu4 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-6 libapt-pkg6.0_2.0.1 libarchive-zip-perl_1.67-2 libassuan0_2.5.3-7ubuntu2 libatomic1_10-20200324-1ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbinutils_2.34-5ubuntu1 libblkid1_2.34-0.1ubuntu8 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.31-0ubuntu6~riscv64.1 libc-dev-bin_2.31-0ubuntu6~riscv64.1 libc6_2.31-0ubuntu6~riscv64.1 libc6-dev_2.31-0ubuntu6~riscv64.1 libcap-ng0_0.7.9-2.1build1 libcc1-0_10-20200324-1ubuntu1 libcom-err2_1.45.5-2ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10ubuntu4 libcrypt1_1:4.4.10-10ubuntu4 libctf-nobfd0_2.34-5ubuntu1 libctf0_2.34-5ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_12.10ubuntu1 libdpkg-perl_1.19.7ubuntu3 libelf1_0.176-1.1build1 libext2fs2_1.45.5-2ubuntu1 libfakeroot_1.24-1 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.6.3-2 libgcc-9-dev_9.3.0-8ubuntu1 libgcc-s1_10-20200324-1ubuntu1 libgcc1_1:10-20200324-1ubuntu1 libgcrypt20_1.8.5-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.1-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.11.1-2ubuntu2 libgomp1_10-20200324-1ubuntu1 libgpg-error0_1.37-1 libgpm2_1.20.7-5 libgsl-dev_2.5+dfsg-6build1 libgsl23_2.5+dfsg-6build1 libgslcblas0_2.5+dfsg-6build1 libhogweed5_3.5.1+really3.5.1-2 libicu66_66.1-2ubuntu2 libidn2-0_2.2.0-2 libisl22_0.22.1-1 liblocale-gettext-perl_1.07-4 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu8 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncursesw6_6.2-0ubuntu2 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12build1 libperl5.30_5.30.0-9build1 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libreadline8_8.0-4 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu8 libsqlite3-0_3.31.1-4 libss2_1.45.5-2ubuntu1 libssl1.1_1.1.1d-2ubuntu6 libstdc++-9-dev_9.3.0-8ubuntu1 libstdc++6_10-20200324-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_244.3-1ubuntu1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10 libtext-iconv-perl_1.7-7 libtinfo6_6.2-0ubuntu2 libtool_2.4.6-13 libuchardet0_0.0.6-3build1 libudev1_244.3-1ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu8 libxml2_2.9.10+dfsg-4build1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-21.25 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu3 logsave_1.45.5-2ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1ubuntu8 ncurses-base_6.2-0ubuntu2 ncurses-bin_6.2-0ubuntu2 openssl_1.1.1d-2ubuntu6 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu3 patch_2.7.6-6 perl_5.30.0-9build1 perl-base_5.30.0-9build1 perl-modules-5.30_5.30.0-9build1 pinentry-curses_1.1.0-3build1 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 qt5-qmake_5.12.5+dfsg-9build1 qt5-qmake-bin_5.12.5+dfsg-9build1 qtchooser_66-2build1 readline-common_8.0-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1ubuntu1 tar_1.30+dfsg-7 tzdata_2019c-3ubuntu1 ubuntu-keyring_2020.02.11.1 util-linux_2.34-0.1ubuntu8 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: clonalframe Binary: clonalframe Architecture: any Version: 1.2-10build1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://www.xavierdidelot.xtreemhost.com/clonalframe.htm Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/clonalframe Vcs-Git: https://salsa.debian.org/med-team/clonalframe.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12), qt5-qmake, libgsl-dev Package-List: clonalframe deb science optional arch=any Checksums-Sha1: 3e107ba13c13cc6bce1531b66a4e337dc4e30675 45475 clonalframe_1.2.orig.tar.gz d8d8c7e361453dea474e5b7cee90532422b35ecd 5832 clonalframe_1.2-10build1.debian.tar.xz Checksums-Sha256: eded106eb6193acd47eef20ae43d6cdcf64ca26aee89f7d81f49d894847f1b67 45475 clonalframe_1.2.orig.tar.gz 002ee5749fc5a73720574bf86091c0ea98e1442130f42dad6815620a231f3ede 5832 clonalframe_1.2-10build1.debian.tar.xz Files: ee75640b1ea5dcf9aca0d732f55817c9 45475 clonalframe_1.2.orig.tar.gz 5fdd48df696e415cfcc82cdbf7c3124c 5832 clonalframe_1.2-10build1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJEBAEBCAAuFiEE1WVxuIqLuvFAv2PWvX6qYHePpvUFAl53kUoQHGRva29AdWJ1 bnR1LmNvbQAKCRC9fqpgd4+m9VjlD/9ExOJd47tjdIp3/vHrtjub1+5SB6Q9blqh wbcA8QRpTlm/EYXGRAaBhfWUOEGzVYokkUo+5CinNzX+823FGBNvY6q9MTgS+B6y xb27fQMsRR9WFXk8ICNgSVlTrwr3Ncu3g3i9ScgzR0a0hzvKTt36XDpTmlimhRYG 5p3q7ul8KkPytEojZ2t63Ic46qL6FeChKeY1bY7teoot+YjHHqeYQ76z/S7u2Mzr vyKmrp+WfhvSc/KZ7XhFrAXSNDEuVZE2gBBswB86WhQ7s/+qFIil7yNQu2/YK8zH 1YVabb7WCeLgwTps9BizFoLtWztJP5Q0lyyldwNtQDVlv9sL2rAb9XnVB3xZ83wR d2yPA7Pq33h81/sI48nnsGz1XRXHZlp8mJAvDYI9iyHepPV5aiCVZ4i+MF117Usa 7CbqlvM4kuJZwCApM9e1Bz/nVTpraMC8DSizP/4VcEzc6CzjH9JyNtLEQByBChu3 4DV0g8c8vfZTsh1pt84FNk2rC6GHabLeEAObi5F4z3wO9Yh2FnXUiXj9irdSgjIW nhaNL/90+qI+knq0YzllNvLJGe43OJod3gEBuxL6K1GWh1l2zVk4ZDf71bFgYTrH 7X3mM4/NpdP1linCME7JnOz3NkLASuIERklIVvr7cYz4DTm7Bqx2lO7yTClynSQR GIT+uwAtpQ== =TSKS -----END PGP SIGNATURE----- gpgv: Signature made Sun Mar 22 16:24:42 2020 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clonalframe_1.2-10build1.dsc dpkg-source: info: extracting clonalframe in /<> dpkg-source: info: unpacking clonalframe_1.2.orig.tar.gz dpkg-source: info: unpacking clonalframe_1.2-10build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_gcc-4.6.patch dpkg-source: info: applying no_qtlibs.patch dpkg-source: info: applying glibc2.27.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19100888 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19100888 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19100888 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package clonalframe dpkg-buildpackage: info: source version 1.2-10build1 dpkg-buildpackage: info: source distribution focal dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 fakeroot debian/rules clean dh clean dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -rf bin build Makefile make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' QT_SELECT=5 CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive" dh_auto_configure qmake -makefile "QMAKE_CFLAGS_RELEASE=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CFLAGS_DEBUG=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_RELEASE=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_DEBUG=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_LFLAGS_RELEASE=-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" "QMAKE_LFLAGS_DEBUG=-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" QMAKE_STRIP=: PREFIX=/usr Info: creating stash file /<>/.qmake.stash make[1]: Leaving directory '/<>' dh_auto_build -a make -j4 make[1]: Entering directory '/<>' g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/alignment_xmfa.o src/alignment_xmfa.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/alignment_structure.o src/alignment_structure.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/alignment.o src/alignment.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/boot.o src/boot.cpp src/alignment_structure.cpp: In constructor ‘wb::Alignment_structure::Alignment_structure(char*, int)’: src/alignment_structure.cpp:45:19: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses] 45 | if (ch>='0' & ch<='9') | ~~^~~~~ src/alignment.cpp: In member function ‘void wb::Alignment::writeToFile(char*)’: src/alignment.cpp:236:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 236 | char * lets="ATCG"; | ^~~~~~ src/alignment.cpp:241:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 241 | for (unsigned int i=0;i>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/burst.o src/burst.cpp src/alignment_xmfa.cpp: In constructor ‘wb::Alignment_xmfa::Alignment_xmfa(char*, bool, int)’: src/alignment_xmfa.cpp:61:68: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wformat=] 61 | printf("Warning: ignoring incomplete fragment %d (does not contain strain %s)\n",v.size(),names[missing]); | ~^ ~~~~~~~~ | | | | int std::vector::size_type {aka long unsigned int} | %ld src/alignment_xmfa.cpp:129:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 129 | for (j=0;j>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/consensus.o src/consensus.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/genes.o src/genes.cpp src/genes.cpp: In constructor ‘wb::Genes::Genes(wb::Alignment*, char*, char*)’: src/genes.cpp:34:19: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 34 | fscanf(mapf,"%d",&buf); | ~~~~~~^~~~~~~~~~~~~~~~ src/genes.cpp:53:19: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 53 | fscanf(genes,"%d %d",&f1,&f2); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/hashcell.o src/hashcell.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_ages.o src/move_ages.cpp src/burst.cpp: In member function ‘void wb::Burst::burst(wb::Param*)’: src/burst.cpp:170:28: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wformat=] 170 | printf("Nb groups=%d\n",groups->size()); | ~^ ~~~~~~~~~~~~~~ | | | | int std::vector >::size_type {aka long unsigned int} | %ld src/burst.cpp:188:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for (k=1;ksize();k++) | ~^~~~~~~~~~~~ src/burst.cpp:190:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 190 | if (k>=rid->size()) continue; | ~^~~~~~~~~~~~~ src/burst.cpp: In member function ‘void wb::Burst::optimiseFathers(gsl_vector_int*, std::vector >*, int)’: src/burst.cpp:259:42: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 259 | if (slvs->at(prop).size()>current && !descended(prop,i,fathers)) { | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ src/burst.cpp:252:89: warning: unused parameter ‘f’ [-Wunused-parameter] 252 | void Burst::optimiseFathers(gsl_vector_int * fathers,vector > *slvs,int f) { | ~~~~^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_delta.o src/move_delta.cpp src/hashcell.cpp: In member function ‘void wb::HashCell::addNode(wb::Tree*)’: src/hashcell.cpp:51:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 51 | if (l>=t->recMap->size) break; | ~^~~~~~~~~~~~~~~~~ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_gap.o src/move_gap.cpp src/move_ages.cpp: In member function ‘virtual void wb::Move_ages::move(wb::Param*)’: src/move_ages.cpp:60:21: warning: suggest braces around empty body in an ‘else’ statement [-Wempty-body] 60 | } else ;//printf("Age change rejected because out of range\n"); | ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_hidden.o src/move_hidden.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_hidden2.o src/move_hidden2.cpp src/move_delta.cpp: In constructor ‘wb::Move_delta::Move_delta(gsl_rng*, wb::Param*)’: src/move_delta.cpp:24:50: warning: unused parameter ‘p’ [-Wunused-parameter] 24 | Move_delta::Move_delta(gsl_rng * rng,Param * p):Move(rng) { | ~~~~~~~~^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_mu.o src/move_mu.cpp src/move_gap.cpp: In constructor ‘wb::Move_gap::Move_gap(gsl_rng*, wb::Param*)’: src/move_gap.cpp:24:46: warning: unused parameter ‘p’ [-Wunused-parameter] 24 | Move_gap::Move_gap(gsl_rng * rng,Param * p) : Move(rng) {} | ~~~~~~~~^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_nu.o src/move_nu.cpp src/move_hidden.cpp: In constructor ‘wb::Move_hidden::Move_hidden(gsl_rng*, wb::Param*)’: src/move_hidden.cpp:25:52: warning: unused parameter ‘p’ [-Wunused-parameter] 25 | Move_hidden::Move_hidden(gsl_rng * rng,Param * p) : Move(rng) | ~~~~~~~~^ src/move_hidden.cpp: In member function ‘void wb::Move_hidden::forwardfast(wb::Param*, wb::Tree*)’: src/move_hidden.cpp:127:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 127 | for (unsigned int i=0;ia->polySites,old)- gsl_vector_int_get(p->a->polySites,old-1); | ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_rho.o src/move_rho.cpp src/move_mu.cpp: In constructor ‘wb::Move_mu::Move_mu(gsl_rng*, wb::Param*)’: src/move_mu.cpp:24:44: warning: unused parameter ‘p’ [-Wunused-parameter] 24 | Move_mu::Move_mu(gsl_rng * rng,Param * p):Move(rng) {} | ~~~~~~~~^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_wb.o src/move_wb.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/move.o src/move.cpp src/move_nu.cpp: In constructor ‘wb::Move_nu::Move_nu(gsl_rng*, wb::Param*)’: src/move_nu.cpp:24:44: warning: unused parameter ‘p’ [-Wunused-parameter] 24 | Move_nu::Move_nu(gsl_rng * rng,Param * p):Move(rng) {} | ~~~~~~~~^ src/move_nu.cpp: In member function ‘virtual void wb::Move_nu::move(wb::Param*)’: src/move_nu.cpp:56:16: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 56 | if (gsl_vector_char_get(t->recMap,j)==1) | ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/param.o src/param.cpp src/move_rho.cpp: In constructor ‘wb::Move_rho::Move_rho(gsl_rng*, wb::Param*)’: src/move_rho.cpp:24:46: warning: unused parameter ‘p’ [-Wunused-parameter] 24 | Move_rho::Move_rho(gsl_rng * rng,Param * p):Move(rng) | ~~~~~~~~^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/recorder.o src/recorder.cpp src/move_wb.cpp: In member function ‘virtual void wb::Move_wb::move(wb::Param*)’: src/move_wb.cpp:127:17: warning: unused variable ‘sizeys2’ [-Wunused-variable] 127 | int sizeys2=propLocs(ys,probys,x,p); | ^~~~~~~ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_coal.o src/tree_coal.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_simple.o src/tree_simple.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_upgma.o src/tree_upgma.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_newick.o src/tree_newick.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree.o src/tree.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/util.o src/util.cpp src/util.cpp: In static member function ‘static void wb::Util::normalize(double*, int)’: src/util.cpp:83:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 83 | for (unsigned int i=0;i>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -fPIC -I. -I/usr/lib/riscv64-linux-gnu/qt5/mkspecs/linux-g++ -o build/ClonalFrame.o src/ClonalFrame.cpp src/tree.cpp: In static member function ‘static wb::Tree* wb::Tree::move(wb::Tree*, wb::Tree*, double, gsl_vector_char*, gsl_vector_char*, wb::Param*)’: src/tree.cpp:99:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 99 | if (z!=NULL) | ^ src/tree.cpp: In member function ‘double wb::Tree::llhoodb(wb::Param*)’: src/tree.cpp:229:87: warning: ‘vals[9]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 229 | } else if (gsl_vector_char_get(recMap,i)==0) {ret+=vals[8];} else {ret+=vals[9];p->rec++;} | ~~~^~~~~~~~~ src/tree.cpp:223:29: warning: ‘vals[5]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 223 | {ret+=vals[5];p->rec++;} | ~~~^~~~~~~~~ src/ClonalFrame.cpp: In function ‘gsl_rng* makerng()’: src/ClonalFrame.cpp:83:14: warning: variable ‘rng_seed’ set but not used [-Wunused-but-set-variable] 83 | long int rng_seed; | ^~~~~~~~ src/ClonalFrame.cpp: In function ‘int main(int, char**)’: src/ClonalFrame.cpp:263:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 263 | if (cleanup==true) {a->cleanUp();a->writeToFile("/tmp/out.xmfa");} | ^~~~~~~~~~~~~~~ src/ClonalFrame.cpp:341:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 341 | printf("Time spent in MH in seconds:%d\n",t2-t); | ~^ ~~~~ | | | | int long unsigned int | %ld src/ClonalFrame.cpp: In function ‘gsl_rng* makerng()’: src/ClonalFrame.cpp:96:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 96 | fread(&seed,sizeof(seed),1,devrandom); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o bin/ClonalFrame build/alignment_xmfa.o build/alignment_structure.o build/alignment.o build/boot.o build/burst.o build/consensus.o build/genes.o build/hashcell.o build/move_ages.o build/move_delta.o build/move_gap.o build/move_hidden.o build/move_hidden2.o build/move_mu.o build/move_nu.o build/move_rho.o build/move_wb.o build/move.o build/param.o build/recorder.o build/tree_coal.o build/tree_simple.o build/tree_upgma.o build/tree_newick.o build/tree.o build/util.o build/ClonalFrame.o -lgsl -lgslcblas make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing clonalframe (in debian/clonalframe); do_strip: , oemstrip: pkgstriptranslations: processing clonalframe-dbgsym (in debian/.debhelper/clonalframe/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clonalframe/DEBIAN/control, package clonalframe, directory debian/clonalframe pkgstripfiles: Truncating usr/share/doc/clonalframe/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package clonalframe ... pkgstripfiles: No PNG files. dpkg-deb: building package 'clonalframe' in '../clonalframe_1.2-10build1_riscv64.deb'. pkgstripfiles: processing control file: debian/.debhelper/clonalframe/dbgsym-root/DEBIAN/control, package clonalframe-dbgsym, directory debian/.debhelper/clonalframe/dbgsym-root dpkg-deb: building package 'clonalframe-dbgsym' in 'debian/.debhelper/scratch-space/build-clonalframe/clonalframe-dbgsym_1.2-10build1_riscv64.deb'. Renaming clonalframe-dbgsym_1.2-10build1_riscv64.deb to clonalframe-dbgsym_1.2-10build1_riscv64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../clonalframe_1.2-10build1_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-04-03T23:13:35Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clonalframe_1.2-10build1_riscv64.changes: ----------------------------------------- Format: 1.8 Date: Sun, 22 Mar 2020 16:36:14 +0100 Source: clonalframe Binary: clonalframe Architecture: riscv64 Version: 1.2-10build1 Distribution: focal Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: clonalframe - inference of bacterial microevolution using multilocus sequence d Changes: clonalframe (1.2-10build1) focal; urgency=medium . * No-change rebuild for libgcc-s1 package name change. Checksums-Sha1: faf21bc7925ef9fdf0d509471103ebad5d38babc 216716 clonalframe-dbgsym_1.2-10build1_riscv64.ddeb 8879c0c33e2008eb992982926ecd3fbdb165a79b 5300 clonalframe_1.2-10build1_riscv64.buildinfo b46560dbba4f90094f674356e2432909f5985830 50124 clonalframe_1.2-10build1_riscv64.deb Checksums-Sha256: ca7333d185af5ace8b9452e4b3a7665322fc0576cdf175c407d1d2f569be2abf 216716 clonalframe-dbgsym_1.2-10build1_riscv64.ddeb 3040b6e0afd67cf183dab587d2d66dd53565b702fdb7b52a63a5b66ce742d757 5300 clonalframe_1.2-10build1_riscv64.buildinfo fac16012ba2e0264f514886fd9040a684b4b3a02ac87b19ed6a448af94dc565c 50124 clonalframe_1.2-10build1_riscv64.deb Files: 41352eb4e8c8a95a59a5ee0f360b42d7 216716 debug optional clonalframe-dbgsym_1.2-10build1_riscv64.ddeb 362441158e5c71279d0c119605260c95 5300 science optional clonalframe_1.2-10build1_riscv64.buildinfo 19addf4f58b87207060a6f0b14632fcc 50124 science optional clonalframe_1.2-10build1_riscv64.deb /<>/clonalframe_1.2-10build1_riscv64.changes.new could not be renamed to /<>/clonalframe_1.2-10build1_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: clonalframe Binary: clonalframe Architecture: riscv64 Version: 1.2-10build1 Checksums-Md5: 41352eb4e8c8a95a59a5ee0f360b42d7 216716 clonalframe-dbgsym_1.2-10build1_riscv64.ddeb 19addf4f58b87207060a6f0b14632fcc 50124 clonalframe_1.2-10build1_riscv64.deb Checksums-Sha1: faf21bc7925ef9fdf0d509471103ebad5d38babc 216716 clonalframe-dbgsym_1.2-10build1_riscv64.ddeb b46560dbba4f90094f674356e2432909f5985830 50124 clonalframe_1.2-10build1_riscv64.deb Checksums-Sha256: ca7333d185af5ace8b9452e4b3a7665322fc0576cdf175c407d1d2f569be2abf 216716 clonalframe-dbgsym_1.2-10build1_riscv64.ddeb fac16012ba2e0264f514886fd9040a684b4b3a02ac87b19ed6a448af94dc565c 50124 clonalframe_1.2-10build1_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Fri, 03 Apr 2020 23:13:27 +0000 Build-Path: /<> Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.1-4ubuntu6), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu4), base-passwd (= 3.5.47), bash (= 5.0-6ubuntu1), binutils (= 2.34-5ubuntu1), binutils-common (= 2.34-5ubuntu1), binutils-riscv64-linux-gnu (= 2.34-5ubuntu1), bsdmainutils (= 11.1.2ubuntu3), bsdutils (= 1:2.34-0.1ubuntu8), build-essential (= 12.8ubuntu1), bzip2 (= 1.0.8-2), coreutils (= 8.30-3ubuntu2), cpp (= 4:9.3.0-1ubuntu2), cpp-9 (= 9.3.0-8ubuntu1), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.10ubuntu1), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.6.3-2), diffutils (= 1:3.7-3), dpkg (= 1.19.7ubuntu3), dpkg-dev (= 1.19.7ubuntu3), dwz (= 0.13-5), file (= 1:5.38-4), findutils (= 4.7.0-1ubuntu1), g++ (= 4:9.3.0-1ubuntu2), g++-9 (= 9.3.0-8ubuntu1), gcc (= 4:9.3.0-1ubuntu2), gcc-10-base (= 10-20200324-1ubuntu1), gcc-9 (= 9.3.0-8ubuntu1), gcc-9-base (= 9.3.0-8ubuntu1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), grep (= 3.4-1), groff-base (= 1.22.4-4build1), gzip (= 1.10-0ubuntu4), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-6), libarchive-zip-perl (= 1.67-2), libatomic1 (= 10-20200324-1ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2ubuntu6), libaudit1 (= 1:2.8.5-2ubuntu6), libbinutils (= 2.34-5ubuntu1), libblkid1 (= 2.34-0.1ubuntu8), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.31-0ubuntu6~riscv64.1), libc-dev-bin (= 2.31-0ubuntu6~riscv64.1), libc6 (= 2.31-0ubuntu6~riscv64.1), libc6-dev (= 2.31-0ubuntu6~riscv64.1), libcap-ng0 (= 0.7.9-2.1build1), libcc1-0 (= 10-20200324-1ubuntu1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.10-10ubuntu4), libcrypt1 (= 1:4.4.10-10ubuntu4), libctf-nobfd0 (= 2.34-5ubuntu1), libctf0 (= 2.34-5ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu2), libdebconfclient0 (= 0.251ubuntu1), libdebhelper-perl (= 12.10ubuntu1), libdpkg-perl (= 1.19.7ubuntu3), libelf1 (= 0.176-1.1build1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.6.3-2), libgcc-9-dev (= 9.3.0-8ubuntu1), libgcc-s1 (= 10-20200324-1ubuntu1), libgcc1 (= 1:10-20200324-1ubuntu1), libgcrypt20 (= 1.8.5-5ubuntu1), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.64.1-1), libgmp10 (= 2:6.2.0+dfsg-4), libgomp1 (= 10-20200324-1ubuntu1), libgpg-error0 (= 1.37-1), libgsl-dev (= 2.5+dfsg-6build1), libgsl23 (= 2.5+dfsg-6build1), libgslcblas0 (= 2.5+dfsg-6build1), libicu66 (= 66.1-2ubuntu2), libisl22 (= 0.22.1-1), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.38-4), libmagic1 (= 1:5.38-4), libmount1 (= 2.34-0.1ubuntu8), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libpam-modules (= 1.3.1-5ubuntu4), libpam-modules-bin (= 1.3.1-5ubuntu4), libpam-runtime (= 1.3.1-5ubuntu4), libpam0g (= 1.3.1-5ubuntu4), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12build1), libperl5.30 (= 5.30.0-9build1), libpipeline1 (= 1.5.2-2build1), libselinux1 (= 3.0-1build2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1ubuntu8), libstdc++-9-dev (= 9.3.0-8ubuntu1), libstdc++6 (= 10-20200324-1ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 244.3-1ubuntu1), libtinfo6 (= 6.2-0ubuntu2), libtool (= 2.4.6-13), libuchardet0 (= 0.0.6-3build1), libudev1 (= 244.3-1ubuntu1), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1ubuntu8), libxml2 (= 2.9.10+dfsg-4build1), libzstd1 (= 1.4.4+dfsg-3), linux-libc-dev (= 5.4.0-21.25), login (= 1:4.8.1-1ubuntu3), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.1-1), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-0ubuntu2), ncurses-bin (= 6.2-0ubuntu2), patch (= 2.7.6-6), perl (= 5.30.0-9build1), perl-base (= 5.30.0-9build1), perl-modules-5.30 (= 5.30.0-9build1), po-debconf (= 1.0.21), qt5-qmake (= 5.12.5+dfsg-9build1), qt5-qmake-bin (= 5.12.5+dfsg-9build1), qtchooser (= 66-2build1), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-2.1ubuntu1), tar (= 1.30+dfsg-7), tzdata (= 2019c-3ubuntu1), util-linux (= 2.34-0.1ubuntu8), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-2ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1584891374" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clonalframe_1.2-10build1_riscv64.deb ------------------------------------ new Debian package, version 2.0. size 50124 bytes: control archive=1276 bytes. 1316 bytes, 24 lines control 577 bytes, 8 lines md5sums Package: clonalframe Version: 1.2-10build1 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 108 Depends: libc6 (>= 2.27), libgcc-s1 (>= 3.0), libgsl23 (>= 2.5), libstdc++6 (>= 5.2) Suggests: clonalframeml Section: science Priority: optional Homepage: http://www.xavierdidelot.xtreemhost.com/clonalframe.htm Description: inference of bacterial microevolution using multilocus sequence data ClonalFrame identifies the clonal relationships between the members of a sample, while also estimating the chromosomal position of homologous recombination events that have disrupted the clonal inheritance. . ClonalFrame can be applied to any kind of sequence data, from a single fragment of DNA to whole genomes. It is well suited for the analysis of MLST data, where 7 gene fragments have been sequenced, but becomes progressively more powerful as the sequenced regions increase in length and number up to whole genomes. However, it requires the sequences to be aligned. If you have genomic data that is not aligned, it is recommend to use Mauve which produces alignment of whole bacterial genomes in exactly the format required for analysis with ClonalFrame. drwxr-xr-x root/root 0 2020-03-22 15:36 ./ drwxr-xr-x root/root 0 2020-03-22 15:36 ./usr/ drwxr-xr-x root/root 0 2020-03-22 15:36 ./usr/bin/ -rwxr-xr-x root/root 89248 2020-03-22 15:36 ./usr/bin/ClonalFrame drwxr-xr-x root/root 0 2020-03-22 15:36 ./usr/share/ drwxr-xr-x root/root 0 2020-03-22 15:36 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-03-22 15:36 ./usr/share/doc/clonalframe/ -rw-r--r-- root/root 412 2019-10-06 07:00 ./usr/share/doc/clonalframe/README.Debian -rw-r--r-- root/root 278 2019-10-06 07:00 ./usr/share/doc/clonalframe/README.test -rw-r--r-- root/root 1285 2020-03-22 15:36 ./usr/share/doc/clonalframe/changelog.Debian.gz -rw-r--r-- root/root 1300 2019-10-06 07:00 ./usr/share/doc/clonalframe/copyright drwxr-xr-x root/root 0 2020-03-22 15:36 ./usr/share/doc/clonalframe/examples/ -rw-r--r-- root/root 409 2019-10-06 07:00 ./usr/share/doc/clonalframe/examples/example.fasta -rw-r--r-- root/root 344 2019-10-06 07:00 ./usr/share/doc/clonalframe/run-unit-test drwxr-xr-x root/root 0 2020-03-22 15:36 ./usr/share/man/ drwxr-xr-x root/root 0 2020-03-22 15:36 ./usr/share/man/man1/ -rw-r--r-- root/root 1055 2020-03-22 15:36 ./usr/share/man/man1/ClonalFrame.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 8532 Build-Time: 251 Distribution: focal Host Architecture: riscv64 Install-Time: 127 Job: clonalframe_1.2-10build1.dsc Machine Architecture: riscv64 Package: clonalframe Package-Time: 412 Source-Version: 1.2-10build1 Space: 8532 Status: successful Version: 1.2-10build1 -------------------------------------------------------------------------------- Finished at 2020-04-03T23:13:35Z Build needed 00:06:52, 8532k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19100888 Scanning for processes to kill in build PACKAGEBUILD-19100888 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19100888 Stopping target for build PACKAGEBUILD-19100888 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19100888 Removing build PACKAGEBUILD-19100888